Citrus Sinensis ID: 007613
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.981 | 0.537 | 0.694 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.729 | 0.549 | 0.262 | 6e-36 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.669 | 0.436 | 0.279 | 2e-35 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.714 | 0.464 | 0.273 | 2e-35 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.758 | 0.750 | 0.258 | 7e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.701 | 0.659 | 0.248 | 1e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.701 | 0.747 | 0.248 | 1e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.666 | 0.630 | 0.259 | 2e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.716 | 0.571 | 0.261 | 3e-34 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.760 | 0.722 | 0.237 | 4e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/585 (69%), Positives = 490/585 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAE 965
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 211/449 (46%), Gaps = 14/449 (3%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
GV P+++ + I+ G+ +RR A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
P++V + + +G C + R E A + E ++ N RP E +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 207/443 (46%), Gaps = 16/443 (3%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCIIGMC---SRRYEKARTL 464
V + +I SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 218/472 (46%), Gaps = 19/472 (4%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
F++L+ C + + A + L++E G + ++T ++ +++ + + +M
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217
Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+ G ++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277
Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
A +++EM ++ PD T ++ N G RA EV + + + + Y I
Sbjct: 278 GARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNI 332
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
I CS GD E A + D+M K+G++P + LI K+EAA +++E + +G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I + ++Y+ L+ + +KA L++ M + ++PT T +LI LC ++ +
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
E+ + G+ P+ + + L+ +++ LL + + P+ V + C++ G+
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512
Query: 454 CSR-RYEKARTL----------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 501
C ++E+AR L +H+ S+N+ K T A MV E + G PT
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571
Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.989 | 0.522 | 0.767 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.524 | 0.762 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.981 | 0.377 | 0.762 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.906 | 0.812 | 0.781 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.924 | 0.504 | 0.736 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.528 | 0.703 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.981 | 0.537 | 0.694 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.981 | 0.537 | 0.694 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.981 | 0.537 | 0.694 | 0.0 | |
| 356544435 | 1071 | PREDICTED: pentatricopeptide repeat-cont | 0.924 | 0.514 | 0.731 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/590 (76%), Positives = 520/590 (88%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
+WTS AL VYRE I AG PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD K SNL
Sbjct: 895 EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954
Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+
Sbjct: 955 CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAE 1004
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/585 (76%), Positives = 515/585 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAE 990
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/585 (76%), Positives = 515/585 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKWTS
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE + AG IPT+E++S+VLGCLQ P + +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I A+
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAE 1425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/540 (78%), Positives = 483/540 (89%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
FNSGR QIENKWTS+ALMVYR + AG PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480
Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
+A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/551 (73%), Positives = 485/551 (88%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRPQ++NKWTSLALMVYRE I AG PT E++S++LGCLQLPY+
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGVS + + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947
Query: 580 DARKLEIHTAK 590
DA++L TA+
Sbjct: 948 DAKELNASTAE 958
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/586 (70%), Positives = 505/586 (86%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877
Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
AL VYRE I AG +P+++V+S+VLGCLQ+P++ ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937
Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
DGFGEYDPRAFSL EEAAS G+ P VS K P+VVDA++L+IHTA+
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAE 983
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/585 (69%), Positives = 490/585 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAE 965
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/585 (69%), Positives = 490/585 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAE 965
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/585 (69%), Positives = 490/585 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAE 965
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/551 (73%), Positives = 481/551 (87%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387 RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 447 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALI GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA GI +GI
Sbjct: 627 SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 687 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747 MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806
Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
KA + E VLSF+SGRP ++NKWTSLALMVYRE I AG PT E++ ++LGCLQLPY+
Sbjct: 807 KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866
Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
++ RLVENLGV A+ + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK P+V+
Sbjct: 867 VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926
Query: 580 DARKLEIHTAK 590
DA++L TA+
Sbjct: 927 DAKELHASTAE 937
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 596 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.981 | 0.537 | 0.694 | 1.2e-223 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.791 | 0.784 | 0.261 | 7.7e-37 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.672 | 0.438 | 0.294 | 4.6e-35 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.682 | 0.772 | 0.278 | 6e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.614 | 0.726 | 0.280 | 9.6e-35 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.699 | 0.657 | 0.252 | 5.5e-34 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.682 | 0.646 | 0.253 | 9.2e-34 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.716 | 0.571 | 0.264 | 4.4e-33 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.765 | 0.727 | 0.244 | 6.2e-33 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.681 | 0.637 | 0.251 | 8.9e-33 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2159 (765.1 bits), Expect = 1.2e-223, P = 1.2e-223
Identities = 406/585 (69%), Positives = 490/585 (83%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAE 965
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 7.7e-37, P = 7.7e-37
Identities = 130/498 (26%), Positives = 238/498 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----YR 491
P++V + ++ G C + R E A + E ++ N RP E +T L + YR
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVLIEGIGFAGYR 559
Query: 492 -EAI-VAGTIPTVEVVSK 507
EA+ +A + ++ +S+
Sbjct: 560 AEAMELANDLVRIDAISE 577
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 4.6e-35, P = 4.6e-35
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.0e-35, P = 6.0e-35
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 9.6e-35, P = 9.6e-35
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 5.5e-34, P = 5.5e-34
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 9.2e-34, P = 9.2e-34
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 4.4e-33, P = 4.4e-33
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 117/479 (24%), Positives = 224/479 (46%)
Query: 91 TLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
T ST F++L+ C + + A + L++E G + ++T ++ +++ +
Sbjct: 152 TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWV 211
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+ +M I+ NV+T+ +I+ K G++ KA G GIM +KP V +N L+
Sbjct: 212 FYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFS 271
Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
G ++ A +++EM ++ PD T ++ N G RA EV + + + +
Sbjct: 272 LRGRIEGARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPD 326
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
Y I I CS GD E A + D+M K+G++P + LI K+EAA +++
Sbjct: 327 SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIR 386
Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
E + +GI + ++Y+ L+ G C + + +KA L++ M + ++PT T +LI LC
Sbjct: 387 EIREKGIVLDSVTYNILINGYCQHG-DAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
++ + E+ + G+ P+ + + L+ +++ LL + + P+ V +
Sbjct: 446 NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTY 505
Query: 448 KCII-GMCSR-RYEKARTLN----------EHVLSFNSGRPQIENKW-TSLALMVYREAI 494
C++ G+C ++E+AR L +H+ S+N+ K T A MV E +
Sbjct: 506 NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
G PT+ + +L L ++ E L+ + S+ CS+I+ D +
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 8.9e-33, P = 8.9e-33
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 596 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 1111 bits (2874), Expect = 0.0
Identities = 442/566 (78%), Positives = 509/566 (89%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKWTS ALMVYRE I AGT+PT+E
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848
Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
V+S+VLGCLQLP++A +R RL+ENLG+SAD+ K+SNL +L+DGFGEYDPRAFSLLEEAAS
Sbjct: 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908
Query: 564 FGIVPCVSFKEIPVVVDARKLEIHTA 589
G+VP VSFK+ P+V+DA +L + A
Sbjct: 909 LGVVPSVSFKKSPIVIDAEELPVFAA 934
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 8e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 7e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.16 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.49 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.29 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.06 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.74 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.45 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.25 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.95 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.86 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.33 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.85 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.76 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.68 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.56 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.79 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.91 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.23 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.73 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.62 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.93 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.33 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 90.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.11 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.54 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.01 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.64 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.51 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.21 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.11 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.05 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.74 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.04 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.74 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.13 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-87 Score=721.41 Aligned_cols=572 Identities=77% Similarity=1.237 Sum_probs=554.0
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHH
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (596)
+.+...++..|+.|++.|++++|+++|++|.+.|.++++..++..++..|.+.|.+++|+++|+.|+.||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34688899999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987555889999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCc
Q 007613 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501 (596)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 501 (596)
.|++++|.++|++|.+.|+.||..+|++||++|.+++++|+.+.++...|+.+.+.+.+.|+++|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHhHHHhhCCCccccccccccccccccccchhHHHHHHHHHHhCCCCCccccCCCCeeecc
Q 007613 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581 (596)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~ 581 (596)
..|+..+++|+....+...+..|.+.+++.|...+|..+.++|+++|...++|+.+|++|.+.|++|+..+.....++|+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888888888899999999999998888889999999777799999999999999999998888899999
Q ss_pred cCCccccccccc
Q 007613 582 RKLEIHTAKGRN 593 (596)
Q Consensus 582 ~~~~~~~~~~~~ 593 (596)
|.|+++.|||+.
T Consensus 927 ~~~~~~aa~~~l 938 (1060)
T PLN03218 927 EELPVFAAEVYL 938 (1060)
T ss_pred ccCcchhHHHHH
Confidence 999999999873
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-70 Score=598.25 Aligned_cols=519 Identities=19% Similarity=0.293 Sum_probs=444.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhh
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQ 74 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~ 74 (596)
......+++.|++++|+.+|++|.+.|..|....+ ...++..+.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 34455667999999999999999998754332221 12334455677
Q ss_pred HHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-----------------------
Q 007613 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT----------------------- 131 (596)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----------------------- 131 (596)
|+++.|+++|+.|++||.++||++|.+|++.|++++|+++|++|...|+.||..||+
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999989888877764
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 132 ------------TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (596)
Q Consensus 132 ------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (596)
.|+.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 55566667777777777777776 56777788888888888888888888888888888888888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007613 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (596)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (596)
|+.++.+|++.|+.+.|.+++..|.+. |+.||..+|++++.+|++.|++++|.++|+.|.. ||..+||++|.+|
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 888888888888888888888888765 7788888888889999999999999999988863 5668899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (596)
++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+||+|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
++|++|. .+|..+||++|.+|+++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.|
T Consensus 445 ~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999997 58899999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHH------------HHHHHHHHHHcCCCCcHHHHHH
Q 007613 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSK 507 (596)
Q Consensus 440 ~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~~ 507 (596)
+.++..++|+||++|++ +|+++++...|+.+ ..+..+|+++ |+.+|++|.+.|+.||.+||..
T Consensus 520 ~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999654 67777777778777 6677888874 9999999999999999999998
Q ss_pred HH-hhcCCC---CchhHHHhHHHhhCCCccccccccccccccccccch--hHHHHHHHHHHhCCCCCccccCCCCeee
Q 007613 508 VL-GCLQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVV 579 (596)
Q Consensus 508 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~~~~~g~~p~~~~~~~~~~~ 579 (596)
++ +|++.+ ++.++++.|.+.+|+.|+..+|+ ++|+.+++.+ ++|.+++++| |+.||+.+|
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m---------~~~pd~~~~ 660 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM---------PITPDPAVW 660 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC---------CCCCCHHHH
Confidence 87 787755 34567888888899999999987 7999988754 5676666665 355566665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=561.74 Aligned_cols=507 Identities=20% Similarity=0.297 Sum_probs=403.7
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007613 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (596)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (596)
+++.+||.++ +.|++++|+++|++|.+.|..|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3556677666 899999999999999988875543322 23455
Q ss_pred HHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007613 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (596)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (596)
..+.+.|++++|.++|+.|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 007613 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (596)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (596)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+.+|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999888888888888886 467788888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------
Q 007613 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (596)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 298 (596)
++.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|++||++|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6777777777777777777777777777777777777777777777777776666666666666655432
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (596)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (596)
++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356677777777777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 007613 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (596)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (596)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 8888877 589999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcCCCCc
Q 007613 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (596)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (596)
.|+.|+..+|++++++|+| +|.+.+ |.+++++| +++||..+|..+++.+..+.+
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999765 444433 44555555 578888888888865555555
Q ss_pred hhHHHhHH-HhhCCCccccc-cccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007613 518 ADIRERLV-ENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (596)
Q Consensus 518 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (596)
.+..+... +...+.|+... |..+..+....|++ ++|.++.++|++.|+.++..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~-~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-DEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCCCCCC
Confidence 55544433 33456776432 32222222333553 56778888888888887643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-63 Score=529.89 Aligned_cols=418 Identities=23% Similarity=0.416 Sum_probs=394.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCChHhHHHHHHHHHhc
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASS 105 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 105 (596)
..++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+|+++|.+|++.
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344556689999999999999975 345566678888889999999999999874 68999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 186 GIMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 186 ~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 99986 678999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007613 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (596)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (596)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 421 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 421 (596)
.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 422 --K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 422 --~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
. +..+.|..+|++|++.|+.||..+|+.+|.++
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 1 12467999999999999999999999999654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=515.66 Aligned_cols=454 Identities=20% Similarity=0.311 Sum_probs=402.0
Q ss_pred hhHHHHHHHHHHhhCC-----CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007613 73 SQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (596)
+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 3344444444444331 47889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 007613 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (596)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (596)
++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 179 ~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~- 253 (697)
T PLN03081 179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT- 253 (697)
T ss_pred HHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-
Confidence 9999997 68999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (596)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 307 (596)
++.||..++++|+++|++.|++++|.++|+.|.. +|..+||++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 254 -g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 254 -GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred -CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999999999999999964 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (596)
++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|+++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999997 58999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhhHHHHHHhhh
Q 007613 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNE 466 (596)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~~~ 466 (596)
|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|.+++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~e 480 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDE 480 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHH
Confidence 99999999999999999999999999999999999999999999999985 6999999999999999765 444443
Q ss_pred hhhhccCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcCCCCchhHHHh-HHHhhCCCcc-ccccccccccc
Q 007613 467 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLGVSAD-ALKRSNLCSLI 544 (596)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i 544 (596)
|.++|++ .++.|+..+|..++..+....+.+..+. ..+..++.|+ ..+|. .++
T Consensus 481 -------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~---~L~ 535 (697)
T PLN03081 481 -------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV---VLL 535 (697)
T ss_pred -------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH---HHH
Confidence 3344444 4789999999998854433333333333 3344677776 45555 455
Q ss_pred cccccc--hhHHHHHHHHHHhCCCCCc
Q 007613 545 DGFGEY--DPRAFSLLEEAASFGIVPC 569 (596)
Q Consensus 545 ~~~g~~--~~~a~~~~~~~~~~g~~p~ 569 (596)
..+++. .++|.+++++|.+.|+...
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 555432 3689999999999998643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=502.67 Aligned_cols=453 Identities=18% Similarity=0.272 Sum_probs=407.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
+.+.++++.|.+++..|.+.|..| +...+..++..+.+.|++++|.++|+.|+.||.++||+++.+|++.|++++|+++
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 336778888888888888888654 5566667778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (596)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (596)
|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+||++|+++|++++|.++|++|. +
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
+|.++||++|.+|++.|++++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+.|+.++..+|++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 68999999999999999999999999999875 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007613 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (596)
||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999964 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 355 WQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (596)
Q Consensus 355 ~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (596)
+++|.++|+.|.+ .|+.|+..+|++|+.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999986 699999999999999999999999999999876 478999999999999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhcc--------------------CC---CccchhhhHHHHH
Q 007613 434 QAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFN--------------------SG---RPQIENKWTSLAL 487 (596)
Q Consensus 434 ~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~--------------------~~---~~~~~~~~~~~a~ 487 (596)
++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-. .+ .|... .-.....
T Consensus 519 ~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~-~i~~~l~ 595 (697)
T PLN03081 519 KLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR-EIYQKLD 595 (697)
T ss_pred HHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHH-HHHHHHH
Confidence 9975 5564 5689999999887 6777776655443211 00 11111 1122456
Q ss_pred HHHHHHHHcCCCCcHHH
Q 007613 488 MVYREAIVAGTIPTVEV 504 (596)
Q Consensus 488 ~~~~~m~~~g~~p~~~~ 504 (596)
.+..+|.+.|..||...
T Consensus 596 ~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 596 ELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHcCCCCCcch
Confidence 78889999999998654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-26 Score=259.74 Aligned_cols=515 Identities=16% Similarity=0.080 Sum_probs=359.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCC
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 107 (596)
....+.+.|++++|++.++++...+ |.+......+...+...|++++|.++|+++. +.+...+..+...+...|+
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3344446667777777776666554 4444445555566666677777777776543 3345566666666777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
+++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +.+..+|..+...|...|++++|.+.|++
T Consensus 413 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777777766553 2233455556677777777777877777776543 45677888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
+.+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++++.+.+ +.
T Consensus 491 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 491 ALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 87653 344566777788888888888888888888753 23456677788888888888888888888887765 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
+...+..++..|.+.|++++|..+++.+.+... .+...|..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 667788888889999999999999998887543 367788888889999999999999999888765 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
+|.+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999888754 4567888899999999999999999999988763 4567778888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhhH------------HHHHHHHHHH
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREA 493 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m 493 (596)
|...++++.+.+ |+..++..+..++.+ .+++|....+..... .|.+...+. ..|...|+++
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999988754 555566666666554 455554443322211 222222222 2488889988
Q ss_pred HHcCCCCcHHHHHHHHh--hcCCCCchhHHHhHHHhhCCCccccccc-cccccccccccchhHHHHHHHHHHhCCCCCc
Q 007613 494 IVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADALKRS-NLCSLIDGFGEYDPRAFSLLEEAASFGIVPC 569 (596)
Q Consensus 494 ~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~ 569 (596)
++.. |+.......++ +...+. .+....+.+...+.|+..... .++.+....|+ .++|...++++.+. .|+
T Consensus 797 ~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~~~ 869 (899)
T TIGR02917 797 VKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI--APE 869 (899)
T ss_pred HHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh--CCC
Confidence 8764 55543333222 233333 445555666666777654321 11122222243 46899999999884 454
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-26 Score=257.12 Aligned_cols=513 Identities=13% Similarity=0.064 Sum_probs=401.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhc
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 105 (596)
......+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+.+. +.+......++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 334445568999999999999999876 6666667777777888899999999998754 23445667778889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
|++++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998753 6678899999999999999999999999998764 556778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007613 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (596)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (596)
+++...+ +.+..++..+...+.+.|+.++|...+.++... .+.+...+..+...|.+.|++++|..+++.+.+..
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9998764 456788889999999999999999999998764 23456677888999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (596)
+.+..+|..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 667889999999999999999999999999876543 66788889999999999999999999998875 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (596)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (596)
...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 999999999999999999998765 467788888999999999999999999999874 56667888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhhHH-----------HHHHHHHH
Q 007613 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS-----------LALMVYRE 492 (596)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~a~~~~~~ 492 (596)
++|.+.++++.+.. ..+...+..+..+|.+ .+++|....+..... .|.+...+.. .|+..+++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999998753 3456667777777654 556665554433222 2333333322 37777777
Q ss_pred HHHcCCCCcHHHHHHHHh--hcCCCCchhHHHhHHHhhCCCcc-ccccccccccccccccchhHHHHHHHHHH
Q 007613 493 AIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (596)
Q Consensus 493 m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~~~ 562 (596)
.++. .|+...+...++ +...+.-.+....+.+.+...|. +..+.+++......|+ .++|..++++|+
T Consensus 829 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 7654 566554443333 23344445555556666666664 4444433333333354 467888888875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=193.56 Aligned_cols=301 Identities=13% Similarity=0.109 Sum_probs=172.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCC
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (596)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677888888888887764 34556777777777788888888888877776431111 2456677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChhHHH
Q 007613 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~ 254 (596)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888877777777642 3456677777777777777777777777776531 11111 112334445555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
..|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665543 333445555556666666666666666665544322112344455555555555555555555554442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.++.|++
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 23333445555555555555555555554443 3455555544444432 33455555555555544444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=187.12 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcc
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (596)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344568899999999999999874 45667899999999999999999999999987642222 24678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 007613 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (596)
|++++|..+|+++... .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999863 235677899999999999999999999999988653332 224567788889999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876533 4667888889999999999999999999987533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCC
Q 007613 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 466667788999999999999999999998874 7999999988887664 5689999999999998777666
Q ss_pred HH
Q 007613 444 LV 445 (596)
Q Consensus 444 ~~ 445 (596)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 64
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-17 Score=186.45 Aligned_cols=285 Identities=16% Similarity=0.135 Sum_probs=186.6
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (596)
.|++..........+.+.|+.++|.+.+++..+.. |.+..+. ....+.+...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 45555556666666678899999999998888877 4443332 12233455667888888888
Q ss_pred hhCCC---CChH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 007613 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (596)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 158 (596)
++..+ ++.. ............|+.++|+..++++.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87642 2221 11111122234588888888888888764 44667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHhhH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 007613 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (596)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHHcCChhHHHH
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~ 255 (596)
..+.. +.+...+..+..++.+.|++++|...|++....... .++...+ ......+.+.|++++|+.
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88763 336777888888888889999998888887754211 1111111 122345677888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (596)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+..
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 888888875 556677788888888888999998888888775432 3334433333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=196.33 Aligned_cols=387 Identities=12% Similarity=0.058 Sum_probs=297.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCh---HhHHH-----------
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL---STFNM----------- 97 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~---~~~~~----------- 97 (596)
.+...|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.. .|+. ..|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457899999999999999887 6777778888888888899999999998754 2221 12222
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998864 4567778888999999999999999999988764 445666777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHc
Q 007613 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANA 247 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 247 (596)
+.++|+..++.+...... .....+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc
Confidence 789998888766432100 01223455667788899999999999998864 34 455677788899999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAG 318 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g 318 (596)
|++++|...++++.+.. +.++..+..+...+.+.++.++|+..++.+......++.. .+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999988765 4566666666777788999999999998875443322221 1234456788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998872 35566777889999999999999999999998764 4568889999999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 399 DMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 399 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
...+. .|+ ..++..+..++...|++++|.++++++++.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88763 444 555677788888999999999999999874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-20 Score=175.05 Aligned_cols=392 Identities=14% Similarity=0.107 Sum_probs=234.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHHHHHh
Q 007613 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (596)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~ 104 (596)
.+.....+.+.|++.+|.+-....-.++ |.+.....++...+.+..+++.....-.. ..+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4445566778999999998877776665 22222222222223222223222111111 112234566667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 183 (596)
.|+++.|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 777777777777777653 334566777777777777777777777766654 344332 2334444445667777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 184 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
.|.+..+. .|. .+.|+.|...+-..|+...|++.|++... ++|+ ...|-.|...|...+.+++|...+.+..
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 66666654 232 45666666666667777777777766653 3443 3356666666666666677666666665
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
... +....++..+...|...|..+-|+..+++..+..+. =...|+.+..++-..|++.+|.+.+....... +--...
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 543 334555666666666667777777777666654322 13456666666666677777777766666553 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 419 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 419 (596)
.+.|...|...|.+++|..+|....+. .|. ....|.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 666666666677777777666666553 233 34566666666666777777766666665 5665 34566666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007613 420 ERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (596)
-..|++..|.+.+.+.+.
T Consensus 433 ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 666666666666666665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-18 Score=177.73 Aligned_cols=330 Identities=11% Similarity=0.041 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
-.++..+.+.|+++.|+.+++...... +-+...+..++.+....|++++|.+.|+++.... +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 334455566666666666666666543 2233344444455556666667776666666553 33455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHH
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 254 (596)
|++++|...|++..... +.+...+..+...+...|++++|...+..+... .|+ ...+..+ ..+...|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 77777776666666542 223455566666666667777666666655432 122 1222222 2355666667776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEA 330 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~ 330 (596)
..++.+.+....++...+..+...+.+.|++++|+..+++..+.... +...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 66666655432233334444455666667777777777666655432 45555666666666666664 56666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007613 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (596)
.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..|+++... .|+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 6654 3455566666666777777777777777666543 233445556666666777777777777666653 34433
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 411 T-YSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 411 t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
. +..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 223345566677777777777666653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-19 Score=171.09 Aligned_cols=387 Identities=15% Similarity=0.158 Sum_probs=318.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
+..+++...+--....+.. |.....+..+..++...|++++|+.+++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555554444444444 5666677778889999999999999998764 3466789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 114 VLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
.|....+. .|+... .+.+...+-..|++++|..-|.+.++. .|. ...|+.|.-.+-..|+...|++-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99988875 565543 344555566689999999999888875 343 567999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 007613 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (596)
Q Consensus 192 g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (596)
.|+ ...|-.|...|...+.+++|...+.+.... .|+ ..++..+...|-..|.++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 455 568889999999999999999999988753 555 5677778888999999999999999998875 4457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..|+.|..++-..|+..+|.+.+.+.+..... .....+.|...|...|.+++|..+|....+.. +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886543 45678889999999999999999999888764 33356788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (596)
-+.|++++|...+++..+. +|+ ..+|+.+...|-..|+.+.|++.+.+... +.|. ...++.|.+.+-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998874 576 46899999999999999999999999887 5666 4678899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH
Q 007613 428 GLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~ 444 (596)
|++-++..++ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999998 55654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-17 Score=176.10 Aligned_cols=322 Identities=11% Similarity=0.016 Sum_probs=172.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+.+.|++++|+.+++...... |.+......++......|++++|...|+++. +.+...+..+...+.+.|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 335666666666666666554 4444444444444445566666666665542 23444555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...++.+.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665542 3344555556666666666666666666554432 1222222222 2355566666666666665544
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCCCC
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKG 267 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~ 267 (596)
...++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...|++..+.. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 222223333344455556666666666666655421 2234445555566666666553 566666665543 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
+..++..+...+.+.|++++|+..+++..+.... +...+..+..++.+.|++++|...++.+...+ +.+...+..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 4555666666666666666666666665554332 34445555556666666666666666655543 112222333444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007613 348 ACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~ 367 (596)
++...|+.++|...|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-17 Score=171.66 Aligned_cols=394 Identities=12% Similarity=0.035 Sum_probs=274.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (596)
-+.+.+.|++++|+..|++.++.. |. ..++..+...+...|++++|+..+.+.. +.+...|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 345568999999999999998876 43 4566677778888899999999998754 44667888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------------------------C--CCCCC
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-------------------------A--GIEPN 161 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------~--g~~~~ 161 (596)
++|+.-|......+ ..+......++.-+........+...++.-.. . ...+.
T Consensus 211 ~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443 11211111111111111001111111110000 0 00000
Q ss_pred -HhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-H
Q 007613 162 -VHTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (596)
Q Consensus 162 -~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (596)
...+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|...+++.... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0001111100 012367889999999888764 223 3456777788888899999999999988753 444 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
..|..+...+...|++++|...|+.+.+.+ +.+..+|..+...+...|++++|+..|++..+.... +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 577778888889999999999999888775 566788889999999999999999999998887543 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCC
Q 007613 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGD 388 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g 388 (596)
.+.|++++|+..++...+.. +.+...++.+...+...|++++|...|++..+.....+. ..++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999888764 556778888999999999999999999988765321111 11222223344568
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 389 QLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
++++|.+++++.... .|+ ...+..+...+.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999988764 344 456888888999999999999999988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-17 Score=176.01 Aligned_cols=405 Identities=10% Similarity=0.004 Sum_probs=306.5
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHH
Q 007613 26 SEQLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSV 101 (596)
Q Consensus 26 ~~~~~~~~~l~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~ 101 (596)
+..+.-|..+. ..|+.++|++++.+..... |.....+..+...+...|++++|..+|++. .+.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455565554 8999999999999998744 556666777888888999999999999984 35567778888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
+...|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998873 55666 8889999999999999999999999874 44666777888889999999999
Q ss_pred HHHHHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHH
Q 007613 182 FGAYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMK 242 (596)
Q Consensus 182 ~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~----~~ll~ 242 (596)
+..++.... .|+. .....++.... ..+++ ++|++.++.+.... +..|+.. .+ ...+.
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHH
Confidence 999987664 2221 11222233222 22334 77888888887531 2233321 11 11133
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcC
Q 007613 243 ACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAG 318 (596)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g 318 (596)
.+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++....... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887632 22 233335778999999999999999987654321 1345666777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (596)
++++|...++.+..... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987631 122 2345667788999999999999999998764 55678899999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 385 CDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
...|++++|++.+++... ..|+ ...+......+...|++++|..+++++++ ..|+..
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 999999999999999987 4566 45566777788999999999999999998 445544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-16 Score=165.01 Aligned_cols=347 Identities=12% Similarity=0.005 Sum_probs=215.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566667777777777776653 4566666677777777777777777777766653 33455666677777777
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHH-----------------------
Q 007613 176 GQVAKAFGAYGIMRSKNV-----------------------------KPDRVVFNAL----------------------- 203 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~-----------------------------~p~~~~~~~l----------------------- 203 (596)
|++++|+..|......+- +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 777777655543322110 0000000000
Q ss_pred -------HHH------HhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 007613 204 -------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (596)
Q Consensus 204 -------i~~------~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (596)
+.. ....+++++|.+.|+...... ...| +...+..+...+...|++++|+..|++..+.. +...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 011245677777777776532 1223 34456666677777788888888888777664 4445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..|..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 67777777777888888888888877766433 56677777777778888888888888777764 44566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHHh
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACER 421 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~~ 421 (596)
.+.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++.... .|+. .+ +...+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHH
Confidence 78888888888888776542 334667777777788888888888888876653 2321 11 1111122333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 007613 422 KDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMC 454 (596)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~ 454 (596)
.|++++|.+++++..+. .|+.. .+..+..++
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 57788888888777763 34433 344444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-16 Score=142.89 Aligned_cols=421 Identities=16% Similarity=0.202 Sum_probs=299.4
Q ss_pred CCCCCCCCCCCCcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----------------
Q 007613 9 LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---------------- 72 (596)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~---------------- 72 (596)
+++|.-..+.-..|..+. +-...-.+|.+|.+.++.-+++.|...|. +-...+...++++..
T Consensus 100 P~l~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv 177 (625)
T KOG4422|consen 100 PQLPVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFV 177 (625)
T ss_pred ccccccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence 333333333223344444 44455567799999999999999999986 333333333333211
Q ss_pred -------------hhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 73 -------------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 73 -------------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
+.|++ |. ++-...+.+..++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-+-
T Consensus 178 ~~~~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 178 GMRNFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred hccccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 11222 22 444455667789999999999999999999999999887779999999999977543
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (596)
. ...++..+|.+..+.||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+
T Consensus 255 ~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 S----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred h----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 3 337899999999999999999999999999998765 46778899999999999999999999998887644
Q ss_pred -HHHHHHHHhhC--CCCCC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHh
Q 007613 216 -AFDVLAEMNAE--VHPVD---P-DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQ 281 (596)
Q Consensus 216 -a~~~~~~~~~~--~~~~~---~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~ 281 (596)
+..++.++... +..+. | |...|...+..|.+..+.+.|.++........ +.++ ..-|..+....|+
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 44444444321 11222 2 46677888999999999999999887665431 1222 2336677888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C------
Q 007613 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N------ 354 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~------ 354 (596)
....+.-...|+.|.-.-.-|+..+...++++..-.|.++-..+++..++..|...+.....-++..+++.. .
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHH
Confidence 999999999999999888889999999999999999999999999999888775555554444444455443 1
Q ss_pred --HH-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC----CCCHHHHHHHH
Q 007613 355 --WQ-----KALELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILL 416 (596)
Q Consensus 355 --~~-----~A~~~~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 416 (596)
+. -|..+++ ++.+. .......+...-.+.+.|+.++|.++|....+++- .|......-++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 00 1111111 12222 33455667777778888888899888888765542 23444444666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC
Q 007613 417 VACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
.+..+..+...|..+++.|...+.
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCc
Confidence 677777788888888887766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-15 Score=156.96 Aligned_cols=411 Identities=13% Similarity=0.090 Sum_probs=274.7
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhH-HHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF-NML 98 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l 98 (596)
.|..........-...++|++++|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+...+ ..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444444444444459999999999999999987 4442 223 455556667899999999999876644433 333
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 99 --i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
...+...|++++|+++++.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 457788899999999999999875 456777888899999999999999999999876 566556655544554566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----H
Q 007613 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----A 245 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~ll~~~-----~ 245 (596)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ...++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 7767999999999884 34567778888899999988888877655321 112211111 1111100 0
Q ss_pred HcCC---hhHHHHHHHHHHhcC--CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 246 NAGQ---VDRAREVYKMIHKYN--IKGTPEV----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 246 ~~g~---~~~a~~~~~~~~~~~--~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
...+ .+.|+.-++.+...- .++.... ..-.+-++...|++.++++.|+.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 344555555554421 1222111 223455667778888888888888877754345567778888888
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HHH
Q 007613 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-STM 377 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~~ 377 (596)
.+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ...
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 888888888888876543 12344445677778888888888888888877621 11222 233
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
..++..+...|+..+|.+.++++... -+-|......+...+...|.+.+|++.++.... +.|+.
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 44566677788888888888888664 344666777777788888888888888866655 34553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-15 Score=159.81 Aligned_cols=364 Identities=13% Similarity=0.077 Sum_probs=271.3
Q ss_pred HHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 007613 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (596)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (596)
..+....|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 444556788999999998754 3445568999999999999999999999988764 556777888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007613 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
+|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998873 44566 8889999999999999999999999873 3345666777888888999999999988665
Q ss_pred hCCCCCCCCH------HHHHHHHHHHH-----HcCCh---hHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcCC
Q 007613 225 AEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTGD 284 (596)
Q Consensus 225 ~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~ 284 (596)
. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+...|+
T Consensus 178 ~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 178 L-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred C-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 3 2331 01122222222 12233 6788888888754 112221 111 111344567799
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 007613 285 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALE 360 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 360 (596)
+++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987642 432 22335778999999999999999987654211 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007613 361 LYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (596)
Q Consensus 361 ~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (596)
+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHH
Confidence 9999986421 123 234566778889999999999999999875 3445677888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 007613 427 VGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 427 ~a~~~~~~~~~~g~~p~~ 444 (596)
+|++.+++.++ +.|+.
T Consensus 411 ~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 411 AAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHHHHHHHHh--hCCCC
Confidence 99999999998 45664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-14 Score=152.31 Aligned_cols=505 Identities=11% Similarity=0.012 Sum_probs=243.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
..|++++|+..|++..+.. |.+..++..+.+++...|+.++|+..+++.. .|+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4477777777777777776 6666666777777777777777777776653 23222222222222 666666666
Q ss_pred HHHHHHcCCCCCHHHHHHH----------------------------------------HHHHHhcCChhHHHHHHHHHH
Q 007613 115 LRLVQEAGLKADCKLYTTL----------------------------------------ITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~l----------------------------------------i~~~~~~g~~~~a~~~~~~m~ 154 (596)
++++.+.. +-+..++..+ ...|.+.|++++|++++.++.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 66666543 2223333333 344444444444444444444
Q ss_pred HCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC
Q 007613 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 233 (596)
+.+ +.+..-...|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|.+++.++.... .-.|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCc
Confidence 443 2223333334344443 133 344443322 112344555556666666666666666665553321 00111
Q ss_pred HHHH------------------------------HHHHHHHHHcCChhHHHHHHH-------------------------
Q 007613 234 HITI------------------------------GALMKACANAGQVDRAREVYK------------------------- 258 (596)
Q Consensus 234 ~~~~------------------------------~~ll~~~~~~g~~~~a~~~~~------------------------- 258 (596)
..++ ..++..+.+.++++.+.++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111 111333333343333333221
Q ss_pred ----HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---
Q 007613 259 ----MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G-VIPDEVFLSALIDFAGHAGK---VEAAFEI--- 326 (596)
Q Consensus 259 ----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~---~~~a~~~--- 326 (596)
.+.+. .+.+......+.-...+.|+.++|.++|+..... + ..++.....-++..|.+.+. ...+..+
T Consensus 363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 00000 0112222222233344567888888888877652 1 22233444466666665544 2222222
Q ss_pred -------------------HHHHHHC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 327 -------------------LQEAKNQ-G-ISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (596)
Q Consensus 327 -------------------~~~~~~~-~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (596)
....... + .++ +...|..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 1 123 55666666666665 6667777766665543 3553333333444
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--hhHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (596)
+.+.|++++|...|+++... +|+...+..+..++.+.|+.++|...+++.++.. |+.. .+..+...+. .++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 45677777777777776542 4444555556666677777777777777776643 3332 2222211110 13444
Q ss_pred HHHhhhhhhhccCCCccchhhhHH------------HHHHHHHHHHHcCCCCcHHHHHHHHhh--cCCCCchhHHHhHHH
Q 007613 461 ARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLGC--LQLPYNADIRERLVE 526 (596)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~ 526 (596)
|....+.....+ |. ...|.. .|+..|++.++. .|+...+...++. ...+...+....+.+
T Consensus 595 Al~~~~~AL~l~---P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIA---PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhC---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 443332222111 11 222222 255566655543 5666555444442 223444444445555
Q ss_pred hhCCCcccc-ccccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007613 527 NLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (596)
Q Consensus 527 ~~~~~~~~~-~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (596)
.+.+.|+.. ...++.......|+ .++|...++++.+ +.|+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a 711 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQA 711 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCc
Confidence 666666533 22222333333344 3567777777766 456544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-13 Score=145.10 Aligned_cols=144 Identities=8% Similarity=-0.033 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--------HhhhHHHHHHHHHHhhCC-CCChHhHHHH-HHHHHhcCCh
Q 007613 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNV--------CKSQKAIKEAFRFFKLVP-NPTLSTFNML-MSVCASSKDS 108 (596)
Q Consensus 39 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~ 108 (596)
+++++|..+++++.+.. |.+..+...+... +.+.++..++++ .+... .|+....... .+.|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 44444444444444443 3333333333333 334444444554 22222 2334444444 7889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
++|+.++..+.+.+ +.+..-...|..+|.. .++ +++..++.. .+..+...+..+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999987 5556667778888887 466 788888654 2246888999999999999999999999998
Q ss_pred HHhC
Q 007613 188 MRSK 191 (596)
Q Consensus 188 m~~~ 191 (596)
+...
T Consensus 273 ~~~~ 276 (987)
T PRK09782 273 NKPL 276 (987)
T ss_pred Cccc
Confidence 7643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-13 Score=140.00 Aligned_cols=427 Identities=12% Similarity=0.087 Sum_probs=259.9
Q ss_pred CcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCh--Hh
Q 007613 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--ST 94 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~ 94 (596)
.++++...-.+..|.+.-.|++..+..+...+....... .-..-+..+++.+-..|++++|..+|-+.. .++. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 355666777777888888888888888888877665211 112224456677777888888888886543 2333 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
+--+.+.+.+.|+++.+...|+.+.+.. +.+..|...|...|...+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4456677888888888888888877653 445566666666666554 4455666655555432 345555655555
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHH
Q 007613 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~------~~~~~ 239 (596)
.|-...-+.. +..|.... ..+-++.+...|.+...+...|++++|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 5544333322 44444332 333345556666666666666666666666665543200 011222 11111
Q ss_pred HHHHHHHc----------------------------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007613 240 LMKACANA----------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (596)
Q Consensus 240 ll~~~~~~----------------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (596)
+...+-.. +...+|...+......+ ..++.+++.+...+.+...+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 12222222 34455555555555544 44556666666677777777
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 286 EFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 286 ~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
..|.+-|....+. ...+|..+.-.|...|.+ .+..++|+++|.++.+.. +-|...-|.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 6666655555432 122466666566654442 234667788888777765 55677777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLML 431 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (596)
|++.+|..+|.++.+... .+..+|-.+.++|...|++..|+++|+... ...-.-+......|.+++...|.+.++.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888888888876542 344577778888888888888888887743 333344566677777888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 007613 432 LSQAKEDGVIPNLVMFKCIIG 452 (596)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~ 452 (596)
........+.-..+.+|..+-
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHH
Confidence 777776444444455555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-13 Score=137.82 Aligned_cols=424 Identities=13% Similarity=0.067 Sum_probs=290.0
Q ss_pred CcccChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC------
Q 007613 20 NYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------ 90 (596)
Q Consensus 20 ~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 90 (596)
..|.++...+...-... ....+..+++++.+.-..+ +.++.....+...+...|++..+..+...+...
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 45677777776664444 3467788999999888877 677888888888888888888888877654321
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
-..+|--+.++|-..|++++|...|....+.. +| +..+--|.+.|.+.|+++.+...|+.+.+.. +.+..+...|
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iL 382 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 23457788999999999999999998887653 34 3455678899999999999999999998763 4567778888
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh----hCCCCCCCCHHHHHHH
Q 007613 169 IDGCAKAG----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGAL 240 (596)
Q Consensus 169 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l 240 (596)
...|+..+ ..+.|..++.+....- +.|...|-.+...+-...- ..++..|.... .. +-.+.....|.+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~--~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESK--GKQIPPEVLNNV 458 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHc--CCCCCHHHHHhH
Confidence 88888775 5677777777777653 4567788777766655443 33355554432 23 223556788999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 007613 241 MKACANAGQVDRAREVYKMIHKY---NIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------- 300 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------- 300 (596)
...+...|+++.|...|...... ...++. .+--.+...+-..++++.|.+.|..+.+..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 99999999999999999887665 112222 1222334444445555555555555544321
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------
Q 007613 301 ----------------------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------ 351 (596)
Q Consensus 301 ----------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------ 351 (596)
..+...++.+...+.....+..|.+-|....+.- ..+|+.+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 1122223333333444444444444333333221 12455555555554432
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 352 ------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (596)
Q Consensus 352 ------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (596)
.+..++|.++|.++.+.. +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|..+...|...|++
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 345788999999888765 56778888899999999999999999999988643 3556788889999999999
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007613 426 EVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (596)
Q Consensus 426 ~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (596)
..|+++|+...+. +-..+..+.++|-.++
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9999999987754 4455666666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-12 Score=137.82 Aligned_cols=396 Identities=10% Similarity=0.057 Sum_probs=278.3
Q ss_pred HHhhhHHHHHHHHHHhhCCC--CCh-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 007613 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (596)
...+.|+++.|+..|++... |+. .....++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34567889999999998763 432 123378888889999999999999988221 23344444556788889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
+++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445777888889999999999999999999877 566666644444454466666799999999874
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSVY 292 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~a~~~~ 292 (596)
.+.+...+..++....+.|-...|.++...-+..- .+....+ ..++..- ...+++ +.|+.-+
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 13346667788888999999988888776544221 1111111 1111100 012233 3455555
Q ss_pred HHHHhC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 293 DDMTKK-GVIPDE-VF----LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 293 ~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..+++.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555441 222322 11 223344778899999999999999999877667788899999999999999999999997
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHhcCCHHH
Q 007613 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVEV 427 (596)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~ 427 (596)
... ..++......|..+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 542 12344446789999999999999999999998731 1133333 4455677889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCC
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (596)
|.+.++.+.... .-|..+...+-+.+.. ...+|..+.+.....++.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 999999998743 2355566666666653 677787777666555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-12 Score=115.86 Aligned_cols=323 Identities=21% Similarity=0.270 Sum_probs=239.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHHHCC-----------
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG----------- 157 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~m~~~g----------- 157 (596)
+++=|.|++. ..+|....+.-+++.|...|++.+...-..|+..-+ ...++.-| ++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4456666664 456889999999999999998877776666655433 22121111 12222222211
Q ss_pred --------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 007613 158 --------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (596)
Q Consensus 158 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (596)
.+.+..++.+||.+.|+.-..++|.+++++-.....+.+..+||.+|.+-.-... .+++.+|... .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq--k 268 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ--K 268 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh--h
Confidence 2567889999999999999999999999999888778999999999976554332 6788899876 7
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCC
Q 007613 230 VDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KGV 300 (596)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~ 300 (596)
+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 899999999999999999987754 5677889999999999999999999998888754 4555555443 223
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 301 IP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 301 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
+| |...|.+.+..|.+..+.+.|.++...+.... +.|+ ..-|..+....++....+.-...|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 32 55678888899999999999999988766431 2333 2235667778888889999999999998766
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
+-|+..+...++++..-.|.++-.-++|.++...|..-+...-.-++.-+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 6788888888899998899998888888888877754444444444444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=128.15 Aligned_cols=409 Identities=13% Similarity=0.193 Sum_probs=279.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC----CCCC----hHhHHHHHHHHHhcCCh
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPT----LSTFNMLMSVCASSKDS 108 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~ 108 (596)
-+.-..+|+..++-+.+...+|..-.+...+..++.+.+.+.+|+++|+.. |.-+ +...+.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 466788999999999998888877776667777788888999999998754 3222 23455555568889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------------CHhhHHHHH-----HH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------~~~~~~~li-----~~ 171 (596)
+.|...|+...+. .|+..+--.|+-++.--|+-++..+.|.+|+.....+ +....|--| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998875 6787766666666777899999999999998653332 222222222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---HH--H----------------HHHHHhccCCHHHHHHHHHHHhhCCC
Q 007613 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---FN--A----------------LITACGQSGAVDRAFDVLAEMNAEVH 228 (596)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~~--~----------------li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (596)
+-+.+ +.++++-.-.++..--+.|+-.. |. + -..-+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 22233322223332222333110 10 0 01236788999999888877654321
Q ss_pred CCCCCHHHHHHH--HH----------------------------------HHHHcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007613 229 PVDPDHITIGAL--MK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (596)
Q Consensus 229 ~~~~~~~~~~~l--l~----------------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (596)
... ...-+.| +. .....|++++|.+.+++....+..-....|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 111 0111111 00 011237788888888888776532222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
| +.-.+-..|++++|++.|-++...-. -+...+..+...|....+..+|++++.+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 33446678999999999877654311 26667777888888889999999998777655 577899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLML 431 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~ 431 (596)
|+-.+|.+.+-.--+. ++-|..+..-|..-|....-.++|+..|++..- ++|+..-|..++..|. +.|+++.|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554432 355777888788888899999999999998765 7899999998887765 58999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
++..... +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988753 67788888888888764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-11 Score=125.71 Aligned_cols=372 Identities=13% Similarity=0.142 Sum_probs=278.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHHH
Q 007613 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSV 101 (596)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~ 101 (596)
+..-..-.|.+.-.|++++|..++.++++.+ |.+...+..++.++.++|+.+++...+-. ..+.|...|-.+-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3344556677777899999999999999998 77778888899999999999999887654 345677899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCC
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQ 177 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~ 177 (596)
..+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.+..-+.|..-. -..+..+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999876 666666666778899999999999999999986422222222 234555667787
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC-------------------------CCCCC
Q 007613 178 VAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVD 231 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~ 231 (596)
-+.|.+.++.....+ -..+...++.++..+.+...++.|......+... +.+..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 899999998887631 2334567788888899999999888877766541 11122
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (596)
++..++ -++-++.+....+....+.......++ ..+...|.-+..+|...|++.+|+++|..+......-+...|-.
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 333331 222334445555555556666666663 33567889999999999999999999999998766557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHH
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALI 381 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li 381 (596)
+..+|...|.+++|.+.+....... +.+...-.+|...+-+.|+.++|.++++.+.. .+..|+...-....
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999999875 55666777888889999999999999998652 22333444444455
Q ss_pred HHHHcCCChhHHHHHHHHHH
Q 007613 382 TALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~ 401 (596)
..+.+.|+.++=+.+...|.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 66777888777655554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-11 Score=112.49 Aligned_cols=256 Identities=16% Similarity=0.063 Sum_probs=118.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHcCC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQ 249 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~ 249 (596)
+|-...+.+++++-.+.....|++-+...-+....+.-...+++.|..+|+++.+.. +.. .|..+|+.++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHH
Confidence 334444555555555555555544333333333334444455555555555555431 111 233444444321111111
Q ss_pred hh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 250 ~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
+. .|..++ .+. +--+.|+..+.+.|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 011111 111 111244455555555555555555555555554332 33445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
.+++-+ +-|-..|-.|..+|.-.+...-|.-.|++..+.. +.|...|.+|..+|.+.++.++|++-|.+....| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 4445555555555555555555555555555432 2345555555555555555555555555554433 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
...+..|...+-+.++.++|.+.+++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555555555555555444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-15 Score=139.58 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (596)
..+.+.|++++|++++....... .+.|...|..+...+...++.+.|.+.++++...+ +-++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccc
Confidence 33444455555555553322221 11222333333334444455555555555554433 1233344444444 345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 007613 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (596)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (596)
++|.+++.+..+. .++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555554444332 233344444444455555555555555544321 1223344444444455555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007613 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (596)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (596)
+..+.. |.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+.++|...++...+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555443 3334444455555555555555444444443332 1122334444444455555555555555544432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+.+...+.+++.+.|+.++|.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444445555555555555444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=124.18 Aligned_cols=290 Identities=11% Similarity=-0.034 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007613 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (596)
..|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34677777777766542 32 2233344455667788888888888776543222223344456677778888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHHHHHhh
Q 007613 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~ 225 (596)
++.+.+.. +.+..++..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887764 446667778888888888888888888888877643 222221 111111 222222333334444433
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
... ..+.+...+..+...+...|+.++|.+++++..+... .+... ...........++.+.+.+.++...+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 1113566777777888888888888888888877642 22211 112222233456777788888777665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 55667788888888888888888854444446777778888888888888888888888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-10 Score=108.84 Aligned_cols=451 Identities=11% Similarity=0.065 Sum_probs=292.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC--------CCCChHhHHHHHHH
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--------PNPTLSTFNMLMSV 101 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li~~ 101 (596)
..|-.|.+...++.|..+++...+.= |.+..+......+--.+|+.+...++.++. ..-+...|-.=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 34444555555555555555554432 333333333333333334444333333321 12344445555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (596)
|-..|..-.+..+.......|+... ..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......=-..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHH
Confidence 6666666666666666666665432 4588888888889999999999998887653 456677887777777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (596)
+...+|++.... ++-....|-....-+-..|++..|..++.+.... .+.+...|.+.+..-....+++.|..+|.+
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~---~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA---NPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 888888888876 2444566666667777789999999988887753 122456777788888888889999999988
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007613 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (596)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (596)
.... .++..+|.--+...--.++.++|++++++.++.- |+ ...|-.+...+.+.++.+.|...|..-.+. ++-.
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 7663 5667778777777778888999999998887762 34 346777777888888889888888766554 3555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
+..|-.|...--+.|.+-+|+.++++..-.+ +.+...|-..|..-.+.|..+.|..+..+..+. ++-+...|.--|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 6677788887888888889999998887655 567788888888888999999988888877664 45556667777766
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHHHHHcCC
Q 007613 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 498 (596)
..+.++--.... .+.+..-+|.+...-+-+--.-+.+++|..+.+..+.. .+..+..|.- +|+--+..|-
T Consensus 797 e~~~~rkTks~D---ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~----fykfel~hG~ 866 (913)
T KOG0495|consen 797 EPRPQRKTKSID---ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAW----FYKFELRHGT 866 (913)
T ss_pred ccCcccchHHHH---HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHH----HHHHHHHhCC
Confidence 666666333333 33343334444332222211123677777775533222 2344445521 2222344565
Q ss_pred CCcHHH
Q 007613 499 IPTVEV 504 (596)
Q Consensus 499 ~p~~~~ 504 (596)
.-|..-
T Consensus 867 eed~ke 872 (913)
T KOG0495|consen 867 EEDQKE 872 (913)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-10 Score=104.51 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=286.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
.++.+..|..+|++.+..+ .-+..+....+..-.+++.+..|+.+++... +.-...|--.+-.=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 5778888999999998877 3455555556666777888999999998753 2222345555555566799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007613 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (596)
+|++-.+. .|+...|++.|+.=.+-..++.|..+|+..+-. .|++.+|--....=.++|....|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988764 899999999999999999999999999998754 799999999999889999999999999887754 2
Q ss_pred C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChhHHHHH--------HHHHH
Q 007613 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (596)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~ 261 (596)
- .-+...+.+...-=.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 111223444444344567788888888777653 2222 33444444443445554333322 34444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHH
Q 007613 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAK 331 (596)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~a~~~~~~~~ 331 (596)
+.+ +.|-.+|--.+..-...|+.+...++|++.... +.|-. ..|...|- ++ ....+.+.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 567778888888888889999999999988765 33321 12222221 11 24678888899998888
Q ss_pred HCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+. ++-...||.-+--+|+ ++.++..|.+++...+. ..|-..++...|..-.+.++++....++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 74 4545566665554554 67888899998887764 46888888888888888899999999999988853 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 007613 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGM 453 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~ 453 (596)
|..+|......-...|+.+.|+.+|+..+.. .++.....|.+.|+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 6678888888778889999999999988864 344455667777764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-11 Score=119.27 Aligned_cols=360 Identities=14% Similarity=0.086 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007613 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (596)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (596)
...|++++|.+++..+. +.+...|.+|...|-+.|+.++++..+-..-... +-|...|..+.....+.|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 34589999999998764 4577899999999999999999998876665543 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHh
Q 007613 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF----NALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.|.+.++.. +++....---+..|-+.|+...|...|.++.....+.|..-+ ..+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 556666666678899999999999999999987422222222 234556777788899999998887
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHH
Q 007613 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAIN 277 (596)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li~ 277 (596)
... +-..+...++.++..+.+...++.|.........+.. .++..+ -.++-
T Consensus 308 s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 308 SKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred hhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 632 2234455678888889999999988887776655211 222222 12233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
++......+....+...+.+..+ .-+...|.-+..++...|++.+|+.+|..+.....--+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 34444444444445555555553 3355678889999999999999999999999886666788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
+.|.+.|+...... +-+...--.|-..+-+.|+.++|++.+..+. ..+..|+..........+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998753 3345566677788899999999999999854 23355666666666777888888887
Q ss_pred HHHHHHHHH
Q 007613 428 GLMLLSQAK 436 (596)
Q Consensus 428 a~~~~~~~~ 436 (596)
-..+-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=136.89 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=87.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (596)
.+.+.+.|++++|++++++.......+.+..++..+..++...++.+.|+..++++.. .+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555577777777777754433321245555655566666666777777777776542 233345555555 566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777665543 2445556666677777777777777777765432 234566677777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77652 223556666777777777777766666665543 12333455666677777777777777777766654 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
|+.+...+..++.+.|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666777777777777777777666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-11 Score=122.34 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=215.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (596)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 689999998887765542111 233444455557889999999999998875 45543332 3366788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHHcCChhHHHHH
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 256 (596)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998775 4457778888899999999999999999988752 233332 2344555555555666777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007613 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (596)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (596)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 77765543 567888999999999999999999999998875 3444221 2333445689999999999988775 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
-|...+..+...+.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778889999999999999999999999875 68999988999999999999999999998643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-10 Score=105.87 Aligned_cols=308 Identities=10% Similarity=0.046 Sum_probs=231.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccC
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSG 211 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g 211 (596)
..++-.....+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+... --|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 345555567777888788888888776666666666666778899999999999998731 1256677777643 332
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
+.. +..+.+-...-..+.|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.+.+-|....+...|+.-
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH--HHHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 222 22222221111245554 67778888999999999999999999987 66778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (596)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (596)
++...+-.+. |-..|-.+.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|......| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 9999987655 88999999999999999999999999998875 6789999999999999999999999999999866 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYS--ILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
.+...+..|...|-+.++.++|...|++-.+ .|..-+..... -|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 4668899999999999999999999887654 34333322222 2344567788888887776666542 45554
Q ss_pred HHHHHHHH
Q 007613 446 MFKCIIGM 453 (596)
Q Consensus 446 ~~~~li~~ 453 (596)
-.++|+.-
T Consensus 542 eak~LlRe 549 (559)
T KOG1155|consen 542 EAKALLRE 549 (559)
T ss_pred HHHHHHHH
Confidence 45555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-11 Score=121.64 Aligned_cols=283 Identities=9% Similarity=0.011 Sum_probs=216.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCCHHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 216 (596)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 233333333 44447899999999999999875 55554333 335678889999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 007613 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~ 289 (596)
.+.++++.+. -+.+......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998764 2334667888889999999999999999999987754322 23444455555556667777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
++++.+.+.- ..+......+...+...|+.++|..++....+. +++.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765542 337778888999999999999999999998884 4454322 3334445699999999999888764
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.|.....++...+.+.+++++|.+.|+...+ ..|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667788899999999999999999999987 579999999999999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-08 Score=98.89 Aligned_cols=416 Identities=13% Similarity=0.097 Sum_probs=331.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCChHhHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (596)
.++.++..|..-+.-...++|+-++.+..+.= |.+...... +.+..-++.|..++.+ ..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 34567778888888888888999998888753 444444333 3334456667666654 45678888988888
Q ss_pred HHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHh
Q 007613 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (596)
.=-.+|+.+....++.+ +...|+..+..-|..=...|-..|..-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 77888999998888765 4457888898999888889999999999999999988887653 35789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007613 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (596)
.+.++-|..+|...++. ++.+...|......--..|..+....+|++.... ++.....|....+.+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3456777877777777789999999999998864 3444566777778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
.++..+.+.. +.+..+|-+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 568899999999999999999999999998775 456677776666666789999999999998887
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (596)
++.-...|..+...+-+.++++.|...|..=.+. ++..+..|-.|...-.+.|+.-+|..+|++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3445678888889999999999999988765543 34456788888888888999999999999987653 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
.|..-.+.|+.+.|..+..+.++. +..+-..|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999888763 44555677777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-11 Score=119.54 Aligned_cols=288 Identities=11% Similarity=-0.010 Sum_probs=164.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (596)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-+....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34688888888887776643 33 334445567777788888888888887654 2443 23344567777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHH---HHHHcCChhHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMK---ACANAGQVDRARE 255 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-ll~---~~~~~g~~~~a~~ 255 (596)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -.. .....+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8888888888774 3356667777888888888888888888877642 2 12222211 111 1122222222223
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 007613 256 VYKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 256 ~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 330 (596)
.+..+.+... +.++..+..+...+...|+.++|.+++++..+.........+. ++. .....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 3333333221 2356677777777777777777777777777653321111101 111 112234555555555555
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007613 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (596)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (596)
.+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5442 3333 4445566666666666666666663222222455555556666666666666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-10 Score=101.35 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (596)
+++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|.+|.|+++++.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777888887777643 334556667777777778888888887777753 332 2334455566777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCChhHHH
Q 007613 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 254 (596)
+.|.++|..+.+.+ .--......|+..|-...+|++|+++-+++... +-.+.. ..|.-+...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777777644 223445666777777777777777776665542 111111 11222333333344555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
.++.+..+.+ +.++.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555544 22333333444555555555555555555555543323344455555555555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=121.88 Aligned_cols=283 Identities=13% Similarity=0.082 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (596)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456778888775543 23334556677788888888888888888887651 011345566555433221 11222
Q ss_pred H-HHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
+ +++... -+-...+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 122211 12234588888888888888888888888888765 445678888888888888888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (596)
... +-..|.-+.-.|.+.++++.|.-.|+.+.+-+ +-+.+....+...+-+.|+.++|++++++..... +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33455666677888888888888888888776 4566667777778888888888888888887654 34554444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|..+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556667778888888888888887 45554 45667777888888888888888777763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=107.10 Aligned_cols=418 Identities=17% Similarity=0.181 Sum_probs=264.1
Q ss_pred hcCCHHHHHHHHHHHHHc-----------CCC-----CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChH-hH
Q 007613 37 RQGRISECIDLLEDMERK-----------GLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TF 95 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~-----------~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~ 95 (596)
.+|++.+|++--++.-++ |.+ .....+...+..-+.......+|+..|+-+.. ||.- .-
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 588888888765443221 211 11122223334445555667788888876542 2221 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
-.+...+.+..++..|++.++.....-...+- ...+.+.-.+.+.|.++.|+..|+...+. .||..+--.|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 23445677888999999999877764222222 23444555677899999999999998876 6887776667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHHH-----HHhccCC--HHHHHHHHHHHhhCCCCCCC
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li~-----~~~~~g~--~~~a~~~~~~~~~~~~~~~~ 232 (596)
+.--|+-++..+.|.+|...... |+....+.-|. -.-+.+. -++++-.-..+.. .-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 77789999999999999764322 33333332221 1111111 1112111111111 11223
Q ss_pred CHHH---H------------------HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---------------
Q 007613 233 DHIT---I------------------GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI--------------- 276 (596)
Q Consensus 233 ~~~~---~------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--------------- 276 (596)
+-.. | -.-..-+.+.|+++.|.++++-+.+.+-+.-...-+.|-
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2110 0 001234679999999999998776654322111111111
Q ss_pred ---------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 277 ---------------------NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 277 ---------------------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
+.-..+|++++|.+.+++.+..... ....+-.+.-.+...|++++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 0111347889999999988876322 1122222333567789999999988776543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (596)
..+..+...+...|.-..+..+|.+++.+.... ++.|+....-|...|-+.|+-..|.+..-+--+. ++.|..|..-|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 345777778888898899999999998877653 3556778888999999999999998876654432 56677888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---hHHHHHHh
Q 007613 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTL 464 (596)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~ 464 (596)
..-|....-++.++.+|++..- +.|+..-|..+|..|.| .|.+|-++
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888889999999998776 78999999999988866 45555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=119.57 Aligned_cols=283 Identities=11% Similarity=0.036 Sum_probs=189.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
+.++|...|...... +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 456777777774433 33344666677778888888888888888777642 1125666777665443221 1222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 185 Y-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 185 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+ +.+.... +-.+.+|.++.++|.-.++.+.|++.|++..+ ++| ..++|+.+..-+.....+|.|...|+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 1222221 33467888888888888888888888887764 355 567777777777777778888888887765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (596)
.+ +.+--+|.-+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+++++++.... +-|+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 54 223345555677788888888888888887776654 66667777777778888888888888877765 3333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (596)
-.-+..+...++.++|...++++++.- +.+...+-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 344555666788888888888887642 233456667777888888888888888777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-10 Score=102.29 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=190.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.|++..|+++..+-.+.+- -....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5888888888888777663 335566667777778888888888888887763355666677777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHHcCChhHHHHHH
Q 007613 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (596)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 257 (596)
.+++.+.+ +-++.......++|.+.|++.....++..+.+.+ .-.| ..+|..++.-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88887765 4456777888888888888888888888887652 2222 234555555555545555544555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007613 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (596)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (596)
+..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.. .. .-.+.+-++...-.+..+...+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 2445566666777777777777777777777766655441 11 123345556555555555544442 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
++-.+.+|...|.+.+.+.+|...|+...+. .|+..+|+-+.++|.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466667777777777777777777765553 5677777777777777777777777766644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-09 Score=98.78 Aligned_cols=297 Identities=13% Similarity=0.071 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD--RVVFNALITA 206 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~ 206 (596)
|-.=++.+. ..+.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|..++|+++.+.+.++. .+-+ ......|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 433444432 357899999999998753 3455667788899999999999999999888652 1111 1234456667
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhc
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQT 282 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~ 282 (596)
|...|-+|.|.++|..+...+ .--......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 888899999999998887531 12234667788889999999999999888887764433 22355566666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
.+.+.|..++.+..+.+.+ ++..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888899998888876543 344444556677888999999999999888876666778888888999999999998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 007613 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAK 436 (596)
Q Consensus 363 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~ 436 (596)
..+.+.. +....-..+...-....-.+.|...+.+-.. -+|+...+..++..-.. .|...+-..++..|+
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8887754 3333444444444444455666666655544 37888888888876543 233344444444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-09 Score=98.61 Aligned_cols=387 Identities=11% Similarity=0.075 Sum_probs=245.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~ 109 (596)
|.+.++|++++|++.+.+.++.. |....++......+...|++++..+.--+..+ |+ +..+..-.+++-+.|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999999876 66577777777888888999988887766543 33 335666666777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHh------------
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (596)
+|+.=..-..-.+.--|..+-..+=+.+- ..|.+...+-.+ .+ +-|+....++....+-.
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77643322211111111111111111111 111111111111 11 22333322222222210
Q ss_pred -------------cC---CHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 175 -------------AG---QVAKAFGAYGIMRSK---NVKPD---------RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+ .+..|.+.+.+-... ....+ ..+.......+.-.|+...|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122232222221110 00011 111111112234467888888888888764
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (596)
. +.+...|--+..+|....+.++..+.|....+.+ +.++.+|..-...+.-.+++++|..=|++.....+. +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 1 1122236667778999999999999999998887 667788888888888899999999999998887543 5556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHH--
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------VSTM-- 377 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~-- 377 (596)
|.-+--+..+.++++++...|++.+++ ++-.+.+|+.....+...+++++|.+.|+...+. .|+ ...+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 666666667888999999999998887 4667889999999999999999999999988764 232 1111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
-.++ .+.-.+++..|+.++++..+ +.|- ...|.+|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 11234889999999999887 4454 56788888888999999999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-10 Score=107.24 Aligned_cols=372 Identities=10% Similarity=0.029 Sum_probs=262.7
Q ss_pred HhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHH
Q 007613 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a 146 (596)
+....+.++|...|++....|+..+..+...... ..-.+.+.++.+.... ...++.....+.....-...-++.
T Consensus 151 y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred hhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3445567888888887776777766665543322 1222222333332211 112223333333322111111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
...-.+-.-.+...+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112335566667777777888999999999999998874 667777777788899999988877777777653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (596)
.+....+|-++.--|...|+..+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+.-.. ....
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP 382 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLP 382 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-Ccch
Confidence 34456789999988999999999999999987765 333578999999999999999999998876553111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHHH
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL-K-PTVSTMNAL 380 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~-~~~~~~~~l 380 (596)
+--+.--|.+.++.+.|.+.|.+..... |.|+.+.+-+.-...+.+.+.+|...|+..... +- . .-..+++.|
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 2334446788899999999999998875 778889999988888899999999999987631 10 1 134568889
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.++|.+.+.+++|+..+++.... .+-|..|+.++.-.+...|+++.|...|.+.+- +.|+..+...++..+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999999999999999998875 355788999999999999999999999998876 789998888887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-08 Score=93.01 Aligned_cols=363 Identities=14% Similarity=0.097 Sum_probs=270.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 007613 65 ARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKS 140 (596)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 140 (596)
...+..-.+++++..|+++|+... ..+...|--.+..=.++..+..|..++++.+.. -|- ...|-..+.+=-..
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 333444556788999999999876 356677888888888999999999999998875 333 33555666666778
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007613 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
|++..|.++|+.-.+. .|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|--....=-+.|....+.++|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998876 899999999999999999999999999999865 799999998888888999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH-------
Q 007613 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV------- 291 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~------- 291 (596)
.........-.-+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 98876311111123345555555556778899999998887753 333 45566666655566665433332
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHH--------HHHhcCCHHHHHH
Q 007613 292 -YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLMG--------ACSNAKNWQKALE 360 (596)
Q Consensus 292 -~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li~--------~~~~~g~~~~A~~ 360 (596)
++.+.+.+.. |-.+|--.+..-...|+.+...++++.+...- +|-. . .|...|- .-....+++.+.+
T Consensus 310 qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444454433 66778778888888899999999999998764 4421 1 1222211 1135788999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH----HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 361 LYEHMKSIKLKPTVSTMNALI----TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
+|+...+. ++....|+.-+- .-..++.+...|.+++.... |..|-..+|...|..-.+.++++..+.++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988873 333445555443 33446788999999998877 578999999999999999999999999999999
Q ss_pred HcC
Q 007613 437 EDG 439 (596)
Q Consensus 437 ~~g 439 (596)
+.+
T Consensus 465 e~~ 467 (677)
T KOG1915|consen 465 EFS 467 (677)
T ss_pred hcC
Confidence 844
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-09 Score=99.01 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=225.7
Q ss_pred hHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007613 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (596)
.|++.+|.++..+.. +.....|..-..+.-+.|+.+.+-..+.+..+.--.++...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 477888888876543 22344555556667788999999999999987633566777888888899999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+++.+.+ +.+.........+|.+.|++.....+..+|.+.|.-.|. .+|+.+++-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9988876 667888999999999999999999999999998865543 36777887777777777766677766
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC
Q 007613 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP 302 (596)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p 302 (596)
..+ ...+...-.+++.-+.++|+.++|.++..+..+.+..++. ...-.+.+-++.+.-++..+.-.+ .+.
T Consensus 256 pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 256 PRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred cHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--
Confidence 543 3445556677888899999999999999999988766551 122335566777777777766554 443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (596)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (596)
++..+.++...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+..+|.+++++....-.+|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 4478899999999999999999999977775 58999999999999999999999999988764333333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-10 Score=114.22 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=146.2
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
.||.+||.++|.-||..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .|...||+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 345555555555555555555554 5555554444444555555555555555444433 3445555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC
Q 007613 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (596)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (596)
..+|...|++.. ++..++ -.-.+...+...|--..-..++..+.- ..++.||..+ .+......|
T Consensus 90 l~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHH
Confidence 555555555433 111111 011112222223322222222222111 1233444332 333344556
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
.++.+.+++..++...... +... +++-+... ..+++-....+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666665554332111 1111 13322222 223333332222222 478899999999989999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
.+|++.|++.+..-|..|+-+ .++..-+..+...|.+.|+.|+..|+...+..+.++|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999998888888887755 78888888888999999999999998888777777665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-08 Score=95.57 Aligned_cols=393 Identities=17% Similarity=0.164 Sum_probs=190.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
|+++|++..-...|+..++.=.+.....+....+.+..+.+-.+-+.+++++-..-++..-+-.|..+++.+++++|-+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 34788888888888877765433333334444455555555556666666654444444455566666666666666666
Q ss_pred HHHHHHc------CCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHH
Q 007613 115 LRLVQEA------GLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 115 ~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~ 183 (596)
+...... ..+.+...|..+-+..++.-+.-. ...++..+... -+| ...|++|.+-|.+.|++++|.+
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6554421 112333344444444333322111 11122222211 122 2345555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHh-------------------------------------------------------
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACG------------------------------------------------------- 208 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~------------------------------------------------------- 208 (596)
+|++....- .+..-|+.+.++|+
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 555443321 11222222222221
Q ss_pred -----------ccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---
Q 007613 209 -----------QSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--- 268 (596)
Q Consensus 209 -----------~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 268 (596)
..|+..+-...+.+.... +.|- ...|..+.+.|-..|+++.|+.+|++..+-..+.-
T Consensus 348 nV~eW~kRV~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 123333344444444332 1221 22455566666677777777777776665443221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------IP-------DEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
..+|..-...-.+..+++.|+++.++.....- .| +...|+..++.-...|-++....+++.+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23455555555566666666666655432111 11 12334444444445566666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p 407 (596)
+..+.. +...-.....+-....++++.+++++-+..-..|++ ..|+..+.-+.+ .-.++.|..+|++..+ |++|
T Consensus 505 dLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 554322 221111222233444556666666655443334443 356655554442 2356777777777776 5655
Q ss_pred CHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 007613 408 NTITYSILL--VACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 408 ~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~ 436 (596)
...-+.-|+ .---..|....|..+++++.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 533222222 22233566666777766654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=85.60 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (596)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (596)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-09 Score=113.05 Aligned_cols=248 Identities=13% Similarity=0.017 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHhhCC--CC-ChHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007613 74 QKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (596)
.+++++|+.+|++.. .| +...|..+..++. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988764 33 3445555544433 2345789999999998875 557788888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4557788889999999999999999999998774 43 233334455566789999999999
Q ss_pred HHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 221 AEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
++.... ..|+ ...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 430 ~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 888753 1243 3446667788889999999999998876553 334555666777777777 47777777765421
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 300 -VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 300 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
..|....+ .-..+.-.|+.+.+... +++.+.+
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344555666666655 7777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-08 Score=98.50 Aligned_cols=286 Identities=14% Similarity=0.052 Sum_probs=216.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (596)
Q Consensus 123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (596)
..-++.......+-+-..+++.+..++++.+.+.. +++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34556666666777778889999999999888765 667777777778888888888777777777765 2445778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+.--|...|+..+|.+.|.....-...+ ...|......|+-.|..+.|...+....+.= +....-+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 8888888899999999998876432222 3467888888888899999988887665531 11111222334457778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQ 356 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~ 356 (596)
++++-|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+++.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 8999999999888765433 6777777777777788899999998877622 1 0113446889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
+|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+... +.||..+-+.++..
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9999999988764 67889999999999999999999999999876 78998887777763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-09 Score=99.36 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666677777777666665543 344556666666677777777777777766655432 44555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (596)
+...|++++|...+....+... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6677777777777777665421 2234455566677777777777777777776543 2345566777777777777877
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777664 234455566666677777777777777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-09 Score=110.32 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------HcCChhHHHHHHHH
Q 007613 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (596)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 259 (596)
.+...|...+++... .+..++|.++|++..+. .|+ ...+..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555544444211 13456777778777653 444 334444444333 22346778888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007613 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (596)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (596)
..+.+ +.+..++..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++++.+.+.. +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 77776 556777777777777888888888888887776543 4556777777778888888888888887776522 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVA 418 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 418 (596)
..+..++..+...|++++|...+++..+...+.+...+..+...+...|+.++|...++++... .|+..+. ..+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344445567788888888877765431223445666777777888888888888776542 4454443 334445
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (596)
+...| +.+...++.+.+. .-.+.......++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 55555 3666666665542 2233333334444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-09 Score=98.98 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2223344444444444444444444444444332 122333334444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
..|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 001111223333333444444444444444443332 22233333444444444444444
Q ss_pred HHHHHHHH
Q 007613 289 CSVYDDMT 296 (596)
Q Consensus 289 ~~~~~~m~ 296 (596)
...+++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-12 Score=83.26 Aligned_cols=49 Identities=37% Similarity=0.661 Sum_probs=30.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-07 Score=86.33 Aligned_cols=400 Identities=12% Similarity=0.053 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHhhC
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (596)
---++.++.+.+...+..|.+-|........ .+.+..........+...++-+.|......+
T Consensus 44 qll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~ 123 (564)
T KOG1174|consen 44 QVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQV 123 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcC
Confidence 3345566777788888889998887765421 1122222333344455566777888877777
Q ss_pred CCCCh-HhHHHHHHHHHhcCC--hHHH-------------HHHHHHHHHcC---------------CCCCHHHHHHHHHH
Q 007613 88 PNPTL-STFNMLMSVCASSKD--SEGA-------------FQVLRLVQEAG---------------LKADCKLYTTLITT 136 (596)
Q Consensus 88 ~~~~~-~~~~~li~~~~~~g~--~~~A-------------~~~~~~m~~~g---------------~~~~~~~~~~li~~ 136 (596)
|+.-. .--|.++.-+-+.|- ..+. ++.+.-..+.+ .+|...+....+.+
T Consensus 124 p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 124 PPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKA 203 (564)
T ss_pred CccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHH
Confidence 64322 223334433333321 1111 11111111111 12222222333333
Q ss_pred HHhc--CChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCC
Q 007613 137 CAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGA 212 (596)
Q Consensus 137 ~~~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~ 212 (596)
++.+ ++...+...+-.+... -++-|+.....+.+.+...|+.++|+..|++.... .|+..+ .....-.+...|+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccC
Confidence 3332 3333333333333222 13445555666666666666666666666665543 222211 1111122334455
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
++....+...+.... +-....|..-........++..|+.+-++..+.+ +.+...+-.-...+...|++++|.-.|
T Consensus 282 ~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 555555554444321 1111122222222334445556666555555544 333444444445555666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCC
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~ 370 (596)
+..+...+. +..+|..++..|...|++.+|..+-+...+. ++.+..+.+.+. ..+. ...--++|.++++.-.+.
T Consensus 358 R~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 665544322 4556666666666666666665555444332 123333333331 1121 111235566666555443
Q ss_pred CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 371 KPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 371 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+ ....+.+...+...|..++++.++++... ..||....+.|...+.....++++...|...+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 343 23445555556666666666666666554 356666666666666666666666666666555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-10 Score=99.29 Aligned_cols=228 Identities=15% Similarity=0.003 Sum_probs=105.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (596)
.+.++|.+.|.+.+|.+.|+.-+.+ .|-..||..|-+.|.+..++..|+.++.+-.+.- +.++....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 4445555555555555555444432 2333344444455555555555555554444331 2232333334444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (596)
.++.++|.++++...+.... ++.....+...|.-.++++.|..+++++.+.|+ .++..|+.+.-+|.-.++++-+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 55555555555554443322 334444444444445555555555555555542 2344455554455555555555555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 362 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|++....--.|+ ...|-.+-......|++.-|.+-|+-...++ .-+...++.|.-.-.+.|++++|+.+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 554443222222 2334444444445555555555555444321 11234444444444555555555555555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=115.28 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
.++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677788899999999999999999999998888 8888887777788888999999888888877665
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCCHHH
Q 007613 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEV 271 (596)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 271 (596)
.|-..+|+.|..+|...||+.. |+...+ ....+...+...|.-.....++..+.- .+.-||.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6778899999999999998765 222221 122234445555655555555544321 1222332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
...+.-....|.++.+++++..+...... |..+ +++-+..... +++-..+-..... .|++.+|..+++.-
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 23344455667788888887776543221 2111 2443333222 3333333322222 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (596)
...|+.+.|..++..|.+.|++-+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+..|...|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999888888888777 78888888999999999999999999988888777544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-07 Score=93.69 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCCCH--HHHHHHHHHHHhc
Q 007613 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--------------GVIPDE--VFLSALIDFAGHA 317 (596)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------~~~p~~--~~~~~li~~~~~~ 317 (596)
...+..+...|+| .+++.+-..|....+.+-..+++...... .-.|+. .++..+...|...
T Consensus 131 ~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 3444445555543 45555555555444444444444443321 012333 2345556667778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 007613 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (596)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (596)
|++++|+++++..++.. |-.+..|..-...|-+.|++.+|.+.++...... .-|...-+-.+..+.++|+.++|.+++
T Consensus 208 g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877764 3336677777777888888888888888777654 345555556667777888888888888
Q ss_pred HHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 398 SDMKSLGLCPNTI------TY--SILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 398 ~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
....+.+..|-.. .| .-...+|.+.|++..|++-|..+.+
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7776655433221 12 2345678888888888877776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-06 Score=83.56 Aligned_cols=390 Identities=13% Similarity=0.119 Sum_probs=210.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (596)
..+++...+.+.+.+.+.. |......+..+-.+...|+.++|........ ..+.++|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4566777777777766643 3333333333333334456666666665443 2455677777666666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 007613 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (596)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (596)
.++.....+ +.|...+.-+--.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777654 4456666655555556666666666655555442 3344556666666667777777777776666543
Q ss_pred CCCCHHHHHHHH------HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 007613 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (596)
Q Consensus 193 ~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (596)
-.|+...+.-.. ....+.|..++|.+.+..-... +......-.+-...+.+.+++++|..++..+..++ +
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-P 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-P 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-c
Confidence 234444433222 2234556666666655443321 11111122233455666667777777776666653 2
Q ss_pred CCHHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 267 GTPEVYTIAINCCSQTGDW-----------------------------------EFACSVYDDMTKKGVIPDEVFLSALI 311 (596)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~-----------------------------------~~a~~~~~~m~~~~~~p~~~~~~~li 311 (596)
.+..-|-.+..++.+..+. +..-+++..+.+.|+.+ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 2222223333333222221 22223333444444432 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 007613 312 DFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYEHMKSIKLKPTV- 374 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~- 374 (596)
..|-.....+-..++...+.. .| -+|....| -.++..|-+.|+++.|....+...++ .|+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222111111111111111 10 13444333 35666777888888888888888765 4553
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007613 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
..|..=.+.+...|.+++|...+++..+.. .||...=+.-..-..++.+.++|.++.....+.|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 345555677788888888888888877643 34544433445555677888888888888777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-06 Score=80.38 Aligned_cols=419 Identities=16% Similarity=0.140 Sum_probs=237.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHH--HHHHHH
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVCA 103 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~~ 103 (596)
..-....|...++|.+++|.+...++...+ |.+......-.-...+.+.+++|+.+.+.-.... +++. +=++||
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHH
Confidence 344556677779999999999999999987 5554443333334556788999997766543211 1122 234444
Q ss_pred --hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHH
Q 007613 104 --SSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 104 --~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 179 (596)
+.+..++|+..++ |..+ |..+...-...+-+.|++++|.++|+.+.+.+.+- +...-..++..-.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------ 157 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------ 157 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------
Confidence 6789999999887 3333 34466666778889999999999999997664221 1111111111110
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH---HHHhccCCHHHHHHHHHHHhh--------CCCC---CCCCH-HHHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKAC 244 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~-~~~~~ll~~~ 244 (596)
+... +.+......| ..+|..+. -.+...|++.+|++++..... ...+ +..+. ..-..+.-.+
T Consensus 158 -~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 158 -ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred -hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111 0122222122 22333333 234556777777777766621 0000 00000 0112233445
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh---------------------------------------
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ--------------------------------------- 281 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~--------------------------------------- 281 (596)
-..|+.++|..++..+.+.+. +|.. .-|.++..-..
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766652 2211 11111111000
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007613 282 ------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (596)
Q Consensus 282 ------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (596)
.+..+.+.++-.... +..|. ..+..++..+.+ ......+..++...-+....-...+.-..+......|
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 011111111111111 12232 334444444332 2246677777777666543333556667777888999
Q ss_pred CHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHH----HHH
Q 007613 354 NWQKALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILL----VAC 419 (596)
Q Consensus 354 ~~~~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll----~a~ 419 (596)
+++.|.+++. .+.+.+..|- +...+...+.+.++.+-|..++.+.... .-.+......+++ .--
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 9999999999 6666555554 4455677777777777787777776432 1122223333333 334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhhh
Q 007613 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVL 469 (596)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~ 469 (596)
.+.|+-++|..+++++.+.. .+|..+...++.+|++ .-++|..+...+.
T Consensus 469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 56799999999999999842 4677889999999988 6677777766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-09 Score=95.69 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (596)
-+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+....-+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHH
Confidence 367888999999999999999888876 667778888889999999999999999887653 333333344456777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (596)
-..++.++|.++++...+.. +.++.+...+...|.-.++++.|+..++++++.|+. +...|..+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88889999999999988876 566677777788888899999999999999999987 7888888888888889999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 325 EILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 325 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.-|++....-..|+ ..+|-.|.......|++..|.+.|+-....+ ..+..++|.|.-.-.+.|+.++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98888876544343 3467778777888999999999999887654 34567888888888899999999999988776
Q ss_pred CCCCCC
Q 007613 403 LGLCPN 408 (596)
Q Consensus 403 ~g~~p~ 408 (596)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 4555
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-07 Score=85.70 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=104.2
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
-.|+.-.|..-|+...+....+ ...|--+...|....+.++..+.|.+..+.+.. |+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 3456666666666666654222 233555556666666666666666666665543 44455555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (596)
-|++.+... +-+...|-.+.-+.-+.+.++++...|++.++. ++..+..|+.....+...+++++|.+.|+...+ +
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 666666554 334445555555555666666666666666543 233455666666666666667777766666554 2
Q ss_pred CCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 406 CPN-------TITYS--ILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 406 ~p~-------~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+ ..++. .++ .+.-.+++..|.+++++.++
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc
Confidence 332 11111 111 11223666666666666665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-07 Score=95.43 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=156.2
Q ss_pred HhhhHHHHHHHHHHhhCCC--CC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CC
Q 007613 71 CKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (596)
+...|++++|+..++.... .| ..........+.+.|+.++|..++..+.+.+ +.|..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 3444555566555544221 22 3344555666777888888888888887775 34444455555554222 24
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007613 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (596)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (596)
.+...++|+++... -|.......+.-.+..-..+. .+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56667777776654 233333333322222222232 344455666667753 355566666665555544445554
Q ss_pred HHhhCC---C---------CCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 222 EMNAEV---H---------PVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 222 ~~~~~~---~---------~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
...... . .-+|... ++..+...|...|++++|+++.++..+.. +..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 443210 0 0123322 33444555666777777777777666654 3345666666677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHH
Q 007613 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (596)
|.+.++........ |...-+..+..+.+.|+.++|.+++....+.+..|-... ......+|.+.|++..|.
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777766666544 556666666666677777777777666655543221111 123344555666666655
Q ss_pred HHHHHHH
Q 007613 360 ELYEHMK 366 (596)
Q Consensus 360 ~~~~~m~ 366 (596)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 5555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-07 Score=94.45 Aligned_cols=169 Identities=13% Similarity=0.142 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-V 193 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 193 (596)
..+...|...|...|+++.|..++....+. |. .|.+. ..+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777788888888888777776543 20 12222 2333555667777777777777766532 2 1
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCC---CC-CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC---
Q 007613 194 KPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV---HP-VDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (596)
Q Consensus 194 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 264 (596)
.|. ..+++.|..+|.+.|++++|...+++..... .+ ..|.+ ..++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111 3345566666777777776666655543210 01 11111 123344445555566666665555443210
Q ss_pred CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 265 IK----GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 265 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (596)
.. .-..+++.|...|.+.|++++|.++|++.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 00 11234455555555555555555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-06 Score=76.20 Aligned_cols=411 Identities=13% Similarity=0.093 Sum_probs=233.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (596)
..-++.+.++..|+.+++--...+- .....+..-+...+-..|++++|+..|..+. .++...+-.|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5556778888888888876654442 1222333334444556788888888887653 34555565555555556778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
.+|..+.... +.++..-..|+....+.++-++-..+.+.+.. +..---+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765543 22333444455566667776666666666543 1223334555544555678888888887
Q ss_pred HhCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc--CCh---------------
Q 007613 189 RSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQV--------------- 250 (596)
Q Consensus 189 ~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~--------------- 250 (596)
... .|+-...|.- .-+|.+..-++-+.++++-..++ ++.+....|.......+. |+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 4455555543 34566666677777776666653 222233333332222221 111
Q ss_pred ------------------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (596)
Q Consensus 251 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (596)
+.|++++--+.+. -+.+.-.|+-.|.+.++..+|..+.+++.-. .|-......+..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 1222222221111 1244556677788999999999887765432 343333333332
Q ss_pred HH-Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 313 FA-GH----AGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 313 ~~-~~----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
+. .+ ...+.-|.+.|+..-..+..-| ..--.++...+.-..++++..-.++.+...-...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 11 1224556666665555543322 2233455566666778888888888887655455555555 6788999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhh
Q 007613 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~ 465 (596)
.|.+.+|.++|-+.....+ .|..+|.+++ +.|.+.+..+.|+.++ ++..-..+... |+...+..--+|+++-
T Consensus 406 tgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fs---LLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFS---LLQLIANDCYKANEFY 478 (557)
T ss_pred hcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999988765433 3667776554 5678889988887665 44433333333 3333333223455554
Q ss_pred hhhhhcc
Q 007613 466 EHVLSFN 472 (596)
Q Consensus 466 ~~~~~~~ 472 (596)
-+.+.|+
T Consensus 479 yaaKAFd 485 (557)
T KOG3785|consen 479 YAAKAFD 485 (557)
T ss_pred HHHHhhh
Confidence 4444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=94.97 Aligned_cols=240 Identities=17% Similarity=0.128 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhc-----C--
Q 007613 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (596)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 264 (596)
..+...+...|...|+++.|..++...... ..| ..|...+ .+.+...|...+++++|..+|+.+... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888899999999999888876542 112 1233333 333667888889999999998887542 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007613 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (596)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (596)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112245677778889999999888888776543 1222 122 24666777888899999999998876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--
Q 007613 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (596)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 401 (596)
+.+ -..+++.|...|-+.|++++|+++|+.+.+. +.. + ....++.|...|.+.+...+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999988742 111 1 23467788888999999999999988743
Q ss_pred --hCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 402 --SLGLC-PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 402 --~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
..|.. |+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33321 33 3568899999999999999999988776
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-06 Score=77.83 Aligned_cols=401 Identities=10% Similarity=0.080 Sum_probs=244.6
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHh
Q 007613 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (596)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (596)
.++..|-..+ +.|++++|+..+..+......|....+ .+.-..--.|.+.+|..+-.+.++ ++..-..++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v--nLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV--NLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch--hHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 3667776666 899999999999988876643322222 222222235788899888777653 44445556666667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHhcCCHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (596)
.++-++-..+++.+... ..--.+|....-..-.+.+|+++|.+.... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777777666532 122333444444445688999999998865 35555555443 35667777777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHHhhCC
Q 007613 184 AYGIMRSKNVKPD-RVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEV 227 (596)
Q Consensus 184 ~~~~m~~~g~~p~-~~~~~~li~~~~~~--g~~---------------------------------~~a~~~~~~~~~~~ 227 (596)
++.-..+. .|| +...|....-..+. |+. +.|++++--+..
T Consensus 207 vl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~-- 282 (557)
T KOG3785|consen 207 VLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK-- 282 (557)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--
Confidence 77766654 333 44444333322221 221 122222211111
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
.-|. .-..|+-.|.+.+++.+|..+.+.+... .|-..+ +.++..-........-|.+.|...-+++..-
T Consensus 283 --~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 --HIPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred --hChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 1121 2234555688999999999887765321 121122 2222222223334566777777665555433
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 007613 303 DEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-AL 380 (596)
Q Consensus 303 ~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l 380 (596)
|.. --.++.+.+.-..++++.+-++..+..--...|...+| +..+++..|++.+|+++|-++....+ .|..+|. .|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 322 12334445555677888888888887765555665555 78899999999999999998875443 3455665 45
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.++|.+++.++-|..++-++. -+.+..+.. .+..-|.+.+.+--|-+.|+.+.. ++|++.-|..=-.+|
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 678999999999987766554 233444544 344679999999999999998887 567777665443343
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-07 Score=87.46 Aligned_cols=219 Identities=11% Similarity=-0.016 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
+..+.++.-+.+++... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666431 22333 2446666677788888888888888887775 55678888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
...|++..+.... +..++..+..++...|++++|.+.++...+.. +.+. ........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888876543 45667777777888888888888888887764 2222 1222222334567788888888665532
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
. .|+. |. ........|+..++ +.+..+.+.. +.| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222 22 12222335555544 3455544320 111 23468888888999999999999999998744
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-05 Score=77.04 Aligned_cols=454 Identities=12% Similarity=0.148 Sum_probs=288.6
Q ss_pred hhHHHHHHHHH--hcCCHHH-HHHHHHHHHHcCCCCchHHHHHHHH-HH------Hh-------hhHHHHHHHHHHhhCC
Q 007613 26 SEQLHSYNRLI--RQGRISE-CIDLLEDMERKGLLDMDKVYHARFF-NV------CK-------SQKAIKEAFRFFKLVP 88 (596)
Q Consensus 26 ~~~~~~~~~l~--~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~~l~-~~------~~-------~~~~~~~A~~~~~~~~ 88 (596)
+-++.+|-.+| +.|.... -..+|++..+.-. .....++..+- +. |- -++.++.++.++.+||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 45778898888 5665544 4566788877642 12233333221 11 11 1233444555544554
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
..|-..+....+.|++..-...|+.....= +.-....|...+......+-++-+..++++.++ .++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHH
Confidence 468888888899999999999999887642 222355788899988899999999999999985 45555788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCCHH---HHHHHHHHHhhCCCCCCCC--HHH
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPD--HIT 236 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~--~~~ 236 (596)
-|..+++.+++++|-+.+....... .+.+-..|..+-...++.-+.- ....++..+. +.-+| ...
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi----~rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI----RRFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc----ccCcHHHHHH
Confidence 8889999999999999998876431 2445556776666666554332 2233444443 33455 457
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHH
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----------------G------DWEFACSVYDD 294 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~ 294 (596)
|++|.+.|.+.|.+++|..+|++....-.. ..-|+.+-++|.+- | +++-...-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999987765221 12222333333221 1 12233333444
Q ss_pred HHhCCC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 007613 295 MTKKGV----------IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (596)
Q Consensus 295 m~~~~~----------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 357 (596)
+...+. .| ++..|..-+. ...|+..+-...+.++.+. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333221 01 2223332222 2346777778888887764 122 23468889999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----------CCCC-------CHHHHHHHHH
Q 007613 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLCP-------NTITYSILLV 417 (596)
Q Consensus 358 A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p-------~~~t~~~ll~ 417 (596)
|+.+|++..+...+.- ..+|......-.++.+++.|+++.++.... |-.| +...|+.+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999987554222 345666667777889999999998887531 1111 2234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCC-----ccchhhhHH--------
Q 007613 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTS-------- 484 (596)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~-------- 484 (596)
.--..|-++..+.+++++++..+.....+-|. +--+++-.-++++.+.|+.+- |..-..|++
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~Ny-----AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINY-----AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 66778888999999999988765433333332 112455555666666776652 223346665
Q ss_pred -------HHHHHHHHHHHcCCCCcHH
Q 007613 485 -------LALMVYREAIVAGTIPTVE 503 (596)
Q Consensus 485 -------~a~~~~~~m~~~g~~p~~~ 503 (596)
.|-.+|++.++ |+.|...
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 28889999887 7778764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-07 Score=87.97 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAG-LKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (596)
..+.++.-+..+.... ..|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554322 1111 2345555556666666666666666666543 3345666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (596)
.|++..+.. +-+..+|..+..++...|++++|.+.|+..... .|+..........+...++.++|...|....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666542 123445555556666666666666666665542 2332211111222333455666666664433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-07 Score=78.21 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (596)
+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888876 666778888888888888888888888888776544 5566777777788
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 316 HAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
..|++++|.+.|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877653 22234577777777788888888888888888764 233456677788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.+++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888776654 7888777777777888888877776666665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-05 Score=77.85 Aligned_cols=351 Identities=13% Similarity=0.119 Sum_probs=237.5
Q ss_pred hhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007613 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (596)
..+++...+++.+.+. +....|.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3466666666665553 2234455555555777899999999988877754 45678899888888888999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 007613 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (596)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (596)
|......+ +.|...|.-|.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5678888888777788899998888887777652 33466788888899999999999999999887532
Q ss_pred CCCCHHHHHHHH------HHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (596)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (596)
-.|+...+.-.. ....+.|.++.|.+.+......- ......-..-...+.+.+++++|..++..++... ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 245555543332 34467788888888777654431 2222334456778899999999999999999874 56
Q ss_pred HHHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 007613 304 EVFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (596)
Q Consensus 304 ~~~~~~li~-~~~~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (596)
..-|.-.+. ++.+-.+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 665554444 333232322332 3444332 333222 2233333
Q ss_pred HHHhcCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 348 ACSNAKNWQKALELYEHMK--------SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
.|-.....+ +.+++. ..| -+|+...|+ .++..|-+.|+++.|...++.... ..|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCc
Confidence 232211111 222222 111 156666665 467778899999999999999886 467
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 408 NTI-TYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 408 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
+.+ -|..=.+.+.+.|++++|..++++..+..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 754 45566688899999999999999998753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-07 Score=78.19 Aligned_cols=198 Identities=16% Similarity=0.072 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666666553 3345566666666666666666666666666542 2234455566666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
.|++++|.+.|++..... ...--..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 666666666666665431 111123355555555566666666666666666654 333455555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
..++.....+. ++..++-..|..--..|+.+.+-+.=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666665554 5555555556655666666555555444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-05 Score=74.08 Aligned_cols=316 Identities=12% Similarity=0.087 Sum_probs=157.6
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHH--
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM-- 99 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-- 99 (596)
|-++...+..-+.|+..|++.+|+.-|...++.+ |.+......-...+...|....|+.-|..+.+..+..+.+-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 3445555556666666777777777777766655 444444333444444455555555555444321111122222
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh
Q 007613 100 -SVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (596)
Q Consensus 100 -~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (596)
..+.+.|.+++|..=|+.+.+.....+ ... ....+..+...|+...|+.....+++.. +.|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 245666777777777766665431110 001 1112223334456666666666655543 445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (596)
+..-..+|...|++..|+.-++...+.. .-++.++.-+-..+...|+.+.++...++.++ +.||...+-..-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~YK-- 264 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFYK-- 264 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHHH--
Confidence 6666666666666666655554444332 22344444455555556666666665555552 3455332211100
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAGKVE 321 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~ 321 (596)
+ +.+..+.++.| ......++|.++++-.+...+......... +..+-.++...|++.
T Consensus 265 -k---lkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 265 -K---LKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred -H---HHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 0 01111111111 112334556666666666555443312222 223333444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
+|++.-.++.+.. +.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 325 eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 325 EAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7776666666543 334666666666666666677777777766654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-05 Score=78.22 Aligned_cols=392 Identities=13% Similarity=0.103 Sum_probs=218.1
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH--HhhhHHHHHHHHHHhhCCCCChHhHHHHH
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV--CKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~li 99 (596)
|++...--.-.=+||+.+++++|+.+.+.-.... ..+... +-.+ ..+.+..++|+..++-..+.+..+...-.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRA 117 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHH
Confidence 3333333334445679999999996655433211 111111 1111 23567889999999855555666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH---HHHhc
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKA 175 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~---~~~~~ 175 (596)
..+-+.|++++|+.+|+.+.+.+... +...-..++.+-.. -.+. +.+... ..| ..+|..+.+ .+...
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVP---EVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhc
Confidence 88999999999999999998776321 11111111111110 1111 122222 122 223333332 34567
Q ss_pred CCHHHHHHHHHHHHhC-------C------CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH-HHH
Q 007613 176 GQVAKAFGAYGIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GAL 240 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l 240 (596)
|++.+|+++++..... + +.-+..+. ..|.-.+-..|+..+|.+++...++....-.|...++ |.+
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 8888888888777211 1 00011111 1233455667888888888877776422111111111 111
Q ss_pred HHHHHHcCCh----------------------------------------------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 241 MKACANAGQV----------------------------------------------DRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 241 l~~~~~~g~~----------------------------------------------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
+. .....++ +.+.++-.... +..| ...+.+
T Consensus 269 va-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ 344 (652)
T KOG2376|consen 269 VA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPI 344 (652)
T ss_pred hh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHH
Confidence 11 1111100 01111100000 1122 233444
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 007613 275 AINCCSQT--GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSS 344 (596)
Q Consensus 275 li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 344 (596)
++....+. ..+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHH
Confidence 44433322 2466777777776665433234556666777888999999999999 555555444 45566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 345 LMGACSNAKNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
++..|.+.++-+.|..++.+.... .-.+. ..+|.-+...-.+.|+-++|..+++++.+. -++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 778888888887788888776531 00112 233444444556789999999999999985 36788899999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQA 435 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~ 435 (596)
|++. +.+.|..+-..+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 9886 567777665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-06 Score=80.84 Aligned_cols=303 Identities=15% Similarity=0.027 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---l 203 (596)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444444445555555555544444433210 1111 111122223445666667766666665542 223333331 1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 122333 2333344556667777777777777777665 44556666777777777
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 007613 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~ 355 (596)
|++++|...+++...... .|+. ..|..+...+...|++++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777776665432 1222 2344566667777777777777777643321 1111111 1 222233333432
Q ss_pred HHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcC
Q 007613 356 QKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--N------TITYSILLVACERKD 423 (596)
Q Consensus 356 ~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~g 423 (596)
..+.+. ......... ............++...|+.++|..++..+......+ . .........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 111111100 0111222245667778888888888888876532110 1 111222233456789
Q ss_pred CHHHHHHHHHHHHH
Q 007613 424 DVEVGLMLLSQAKE 437 (596)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (596)
+.++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-05 Score=73.34 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=209.0
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 182 (596)
.++...|...+-.+... -++.|+.....+...+...|+.++|...|++.... .|+. .......-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444555554444332 35667889999999999999999999999998854 2322 22222223346788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
.+...+.... .-....|-.-.......+++..|+.+-+..+... +.+...+..-...+...+++++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8877776542 2234455555555667788999999988877531 22334444445677889999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAGH-AGKVEAAFEILQEAKNQGISVGII 340 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ 340 (596)
.. +.+..+|.-|+.+|...|++.+|.-.-++..+. +..+..+.+.+. ..|.- ..--++|..+++...+.. |.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 64 567889999999999999999998877765543 122555555552 23322 223478888888877664 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
..+.+...+...|..+++..+++..... .||...-+.|...+...+.+.+|++.|....+ +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 6677888899999999999999988764 68999999999999999999999999999887 45543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-05 Score=80.40 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=92.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC--HHHHHHHHHHH
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT--PEVYTIAINCC 279 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~ 279 (596)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++....... ++ ...|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344555555666666555555421 222334445555555566666666665555443211 11 12334455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHh
Q 007613 280 SQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGKVEAAFEI---LQEAKNQGI-SVGIISYSSLMGACSN 351 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~ 351 (596)
...|++++|..++++...... .+..... + .++.-+...|....+... ......... ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543222 1111111 1 222222223322222221 111111100 1111222245666778
Q ss_pred cCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 352 AKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~---~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.|+.+.|..+++.+...... - .+...-...-++...|+.++|.+++.....
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887653211 0 111112222345578899999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-05 Score=80.08 Aligned_cols=374 Identities=14% Similarity=0.034 Sum_probs=202.5
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007613 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (596)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (596)
.|+..++..+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45555555555556667888888888877542 344567777777777777777777777655432223 23333333
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHC--C--CCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH
Q 007613 134 ITTCA-KSGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDR 197 (596)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 197 (596)
-..|. +.+.++++++.-.+.... + -......|..+.-+|... ....++++.+++..+.+ +-|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 33333 234555555555444431 1 022333444444444321 22455666666665543 1122
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-----------
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK----------- 266 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------- 266 (596)
.+...+.--|+..++++.|++...+..+-+. ..+...|..+.-.+...+++.+|+.+.+.....--.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222233345555666677766666665321 234455555555566666666666666544332100
Q ss_pred --------CCHHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH-----------------HhC
Q 007613 267 --------GTPEVYTIAINCCSQ---------T--------------GDWEFACSVYDDM-----------------TKK 298 (596)
Q Consensus 267 --------~~~~~~~~li~~~~~---------~--------------g~~~~a~~~~~~m-----------------~~~ 298 (596)
....+...++..+-. . ++..++.+..+.+ ...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 001111111111110 0 0111111111110 000
Q ss_pred CC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007613 299 GV--IPD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 299 ~~--~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (596)
-+ .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 01 112 1234444556666777777777766666553 4455666666667777788888888887776543
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 371 KPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.++.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+...+-+.|+.+.|.+.|....+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2345677778888888887777777 788877743 33567788888888888888888888877665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-05 Score=85.35 Aligned_cols=337 Identities=9% Similarity=-0.048 Sum_probs=208.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HhhHHHHHHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--I----EPN--VHTYGALIDGCA 173 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~--~~~~~~li~~~~ 173 (596)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777766666554221111122233344555667889999999888765421 0 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (596)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987753111121 23455666677899999999998887642111111 12344556677888
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHH
Q 007613 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPD--EVFLSALIDFAG 315 (596)
Q Consensus 247 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~ 315 (596)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 22344556667778899999999988865421 1121 234444566777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHH---H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 007613 316 HAGKVEAAFEILQEAKNQG--ISVGIIS---Y-SSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~~---~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 386 (596)
..|+.+.|...+....... ....... . ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 1111110 0 1122445568899999999877654211111 1113456677888
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987542 33332 235666677888999999999999998864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-05 Score=77.93 Aligned_cols=400 Identities=14% Similarity=0.068 Sum_probs=242.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC-hHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 108 (596)
-|..+..|+++.|+..|-+.+... |.+.+.+..-...+.+.|++++|++--.+.. .|+ ...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 466779999999999999999887 6688877777777888899988877655433 233 45789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCC---CCCCHhhHHHHHHHHHh--------
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM---FEVFHEMVNAG---IEPNVHTYGALIDGCAK-------- 174 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g---~~~~~~~~~~li~~~~~-------- 174 (596)
++|+.-|..-++.. +.+...++-+.+++.......+. -.++..+.... .......|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 55677788888777221100000 01111111100 00011123333322211
Q ss_pred --cCCHHHHHHHHHH-----HHhC-------CCCC------------C----------HHHHHHHHHHHhccCCHHHHHH
Q 007613 175 --AGQVAKAFGAYGI-----MRSK-------NVKP------------D----------RVVFNALITACGQSGAVDRAFD 218 (596)
Q Consensus 175 --~g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~~~~~li~~~~~~g~~~~a~~ 218 (596)
-.++..+...+.. +... +..| | ..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111122111110 0000 0111 1 1124567788888889999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
-+...... ..+..-++....+|...|...+....-+...+.|...- ...+..+..+|.+.++++.++..|
T Consensus 246 ~y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99888753 44455556666788888887777766665555442110 122333455777888999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (596)
.+.+.....|+..+ +....+++........-.+...... ...-...+.+.|++..|.+.|.+++... +-
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 98776655544322 2233344444443333322111111 1122556778888888888888888765 55
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007613 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (596)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (596)
|...|..-.-+|.+.|.+..|++-.+...+. .|+. ..|..=..++....+++.|.+.|.+..+ .+|+. .-++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~---~e~~ 463 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSN---AEAI 463 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchh---HHHH
Confidence 6778888888888888888888877776663 4443 3455555566667788888888888887 34554 3344
Q ss_pred HHHHh
Q 007613 452 GMCSR 456 (596)
Q Consensus 452 ~~~~~ 456 (596)
+.|.+
T Consensus 464 ~~~~r 468 (539)
T KOG0548|consen 464 DGYRR 468 (539)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-07 Score=86.67 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. ...+.+|..+|+++.+. ..+++.+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI----DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 33444445555555555555555555421 2222 22222222221 12355555555554443 244555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQ 333 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 333 (596)
.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+.++...
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5555555555555555555555444332 344444455555555554 4444555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-05 Score=78.74 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHH
Q 007613 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
..+...|+..|-+..+.+ +.-...+..++.+++...+...|.+.|++.- ..+...+....+.|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344777888887777776 4444556677888887778888999988764 34566777777888888888877776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00018 Score=81.26 Aligned_cols=331 Identities=9% Similarity=0.008 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHhhCCC----CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhc
Q 007613 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAKS 140 (596)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~~~ 140 (596)
..|+++.+...++.++. .+..........+...|++++|...++...+.-- .+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566666777766641 1222233344456678999999999987754311 1111 1222333456678
Q ss_pred CChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccC
Q 007613 141 GKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSG 211 (596)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g 211 (596)
|++++|...+++....--..+ ....+.+...+...|++++|...+++.....- .+. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999999998776311112 13456666777889999999999988764210 111 234455667788899
Q ss_pred CHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 007613 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (596)
Q Consensus 212 ~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (596)
++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887765421 1111 1 22334455566777899999999988775431 111 233455566778899
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007613 283 GDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (596)
|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9999999999887542110 011111 1122444567899999988776544221111 112346677888999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007613 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (596)
+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999987642 22222 245666777888999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00028 Score=64.96 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=182.4
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007613 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (596)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (596)
|.+..-|.-+..-+...|++.+|+..|....+.|+..|.++.+ .|...|+...|+.=+.+..+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3444445555666666777888888887777666666665543 567777777777777777764 566332 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (596)
...+.+.|.+++|..-|+.+++. .|+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 34556778888888888877765 332211 111111111111111 112233344556777
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
..|+.....+++. .+-|...+..-..+|...|++..|+.=++...+.. ..+...+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777653 23355556666677777788877777777666654 3445566666677777788777777777
Q ss_pred HHHhCCCCCCHHH-H---HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHH
Q 007613 294 DMTKKGVIPDEVF-L---SAL---------IDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQK 357 (596)
Q Consensus 294 ~m~~~~~~p~~~~-~---~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 357 (596)
+.++.+ ||... | ..+ +......+++.++.+-.+...+........ .+..+-.+|...|++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 776653 34321 1 111 011223455555555555555554221222 23344455666677777
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 358 ALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 358 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
|++.-.++.+. .|+ +.++.--..+|.-...+++|+.-|+...+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77777776653 333 56666666677777777777777777665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00035 Score=68.30 Aligned_cols=352 Identities=13% Similarity=0.075 Sum_probs=211.6
Q ss_pred HhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007613 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (596)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 44568999999999753 3678889999999999999999999877766654 565 56899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH------HHHHhC---CCCCCHHHHHHHHHHHhcc-------
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY------GIMRSK---NVKPDRVVFNALITACGQS------- 210 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~---g~~p~~~~~~~li~~~~~~------- 210 (596)
+.-|.+-++.. +.|...++-|..++.... .+.+.| ..+... ........|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 456777777777772110 011111 111100 0000111233333322111
Q ss_pred CCHHHHHHHHHHHhh--------CC-----CCCCC------------CH----------HHHHHHHHHHHHcCChhHHHH
Q 007613 211 GAVDRAFDVLAEMNA--------EV-----HPVDP------------DH----------ITIGALMKACANAGQVDRARE 255 (596)
Q Consensus 211 g~~~~a~~~~~~~~~--------~~-----~~~~~------------~~----------~~~~~ll~~~~~~g~~~~a~~ 255 (596)
...+..++....+.. .+ .+..| |. .-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 011111111111100 00 00011 10 113345555566667777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHH
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~a~~~~~ 328 (596)
-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+ .+..+|.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777776654 34444566667777777777766666665555432 111222 23335555677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+.......|+ ...+....+++.+..+...-. .|... ---.=...+.+.|++..|+..+.+++... +-
T Consensus 323 kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7655543332 223344445555555444332 23221 11122556789999999999999999864 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
|...|+...-+|.+.|.+..|+.-.+..++ +.|+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~ 426 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFI 426 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHH
Confidence 677899999999999999999999888887 466654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-08 Score=59.38 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=15.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-05 Score=67.23 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHH-HHHHHHhcC
Q 007613 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~g 106 (596)
.+.-.||+..++.+|++++.--.++. |-+..-...+...+....++..|...++++. .|...-|.. -...+-+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 44567899999999999999888876 5566556666666667778999999998875 344443332 234556778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.+..|+++...|... |+...-..-+.+. -+.+++..+..+.++.... .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 899999998877642 3332222222222 2467888888888887643 2444555555556789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
|+...+-+---....||.-+ +..+.|+++.|++...++...+..-.|.... -.-.++ -...|+ -.. |..
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgN---t~~----lh~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGN---TLV----LHQ 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccc---hHH----HHH
Confidence 99887654333456776544 5557789999999988887653221221000 000000 000000 000 111
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
.++ ...+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-. -..+++.+...-++.+...+. ....|
T Consensus 238 Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 238 SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHH
Confidence 111 133444445555666666666666555422 112344444333221 122334444444444444432 33455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
|..++-.|||..-++-|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 66666666666666666655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00041 Score=67.82 Aligned_cols=393 Identities=12% Similarity=0.121 Sum_probs=219.9
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007613 50 DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126 (596)
Q Consensus 50 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 126 (596)
+-++.+ |.+...+..+++-+..+ ..++++..++++. +-....|..-|..-...++++....+|.+....- .+
T Consensus 11 ~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334445 77777777777777665 7899999998875 3356689999999999999999999999987653 35
Q ss_pred HHHHHHHHHHHHh-cCChhH----HHHHHHHH-HHCCCCC-CHhhHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 007613 127 CKLYTTLITTCAK-SGKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 127 ~~~~~~li~~~~~-~g~~~~----a~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 190 (596)
...|..-|+--.+ .++... ..+.|+-. .+.|+.+ +-..|+..+.. |..+.+++...++|.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6666666653332 233333 22334432 3345433 23346665553 3345567778888888875
Q ss_pred CCCCCCHHHHHH------HHHHH-------hccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHH
Q 007613 191 KNVKPDRVVFNA------LITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMK 242 (596)
Q Consensus 191 ~g~~p~~~~~~~------li~~~-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~ll~ 242 (596)
.-+.-=...|+- =|+-. -+...+..|.++++++..-..|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 422111112221 11111 12234556666666654322232221111 323332
Q ss_pred HHHHcCChh---------HHHHHHHHH-HhcCCCCCHHHHHHHHHHH-------HhcCC-------HHHHHHHHHHHHhC
Q 007613 243 ACANAGQVD---------RAREVYKMI-HKYNIKGTPEVYTIAINCC-------SQTGD-------WEFACSVYDDMTKK 298 (596)
Q Consensus 243 ~~~~~g~~~---------~a~~~~~~~-~~~~~~~~~~~~~~li~~~-------~~~g~-------~~~a~~~~~~m~~~ 298 (596)
. -+.+-+. ...-.+++. .-.+.. +.+|.-.-..+ ...|+ -+++..++++....
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1 1111111 111112221 111222 23332222222 22222 34555555554432
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 007613 299 GVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (596)
-..-+..+|..+...--.. ...+....+++++...-...-..+|..+++.-.+..-+..|+.+|.+..+.+..+ .+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2222333333333211111 1245555666666554322224567778888888888899999999998877666 77
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 007613 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIG 452 (596)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~ 452 (596)
...++++.-||. ++.+-|.++|+-=.+. ..-+..--...+.-+.+.++-..++.+|++.+..++.|+. .+|..+|+
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 788888888774 6678899999874432 2223333456777788888888999999999887666654 46777776
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-08 Score=59.54 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007613 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (596)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (596)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-06 Score=83.16 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007613 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGK 319 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 319 (596)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 223444455555555566666666555555432 12 223333333222 224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLS 398 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 398 (596)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +.+..+...+|......|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 56666666665443 34555666666666666666666666666655433 23444555555555555555 44555555
Q ss_pred HHHh
Q 007613 399 DMKS 402 (596)
Q Consensus 399 ~m~~ 402 (596)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0005 Score=71.95 Aligned_cols=321 Identities=14% Similarity=0.186 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (596)
+.++-..+...++-.+-..+-+++++++.-.+. ++.+.....+++-...+. +-....++.+++..-|. -.+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHHHH
Confidence 344555667777888999999999988875542 334444444333222221 11222223333221111 1122334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (596)
..++-+++|..+|... ..+....+.|+. .-+.++.|.+.-++.. .+..|+.+..+-.+.|.+.+|+
T Consensus 1059 i~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 4556667777777654 234444555554 2345566666555443 3445777777777777777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+-|-+.- |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .=+.|+-+|++.+++.+.+++..
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----
Confidence 6654332 5566777777777777777777766555443 22333 23456667777776665554432
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (596)
-|+..-...+.+-|...|.++.|.-+|... ..|..+...+...|++..|.+.-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 334444455555666666666665554432 23455555555555555554433321 134455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
-.+-.+|...+.+.-| +|...++--...-..-++.-|-..|-+++.+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555444433322 222222222233344455555555555555555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00028 Score=71.93 Aligned_cols=361 Identities=12% Similarity=0.026 Sum_probs=237.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--C--C-ChHhHHHHHHHHHh-cCCh
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKDS 108 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~g~~ 108 (596)
|.++|+++.+.+.|++...--. .....++. +...+...|.-..|..+++.-. . | |...+-..-+.|.+ .+..
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~-~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSF-GEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhh-hhHHHHHH-HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 4489999999999998876432 22333332 2223334455677888877532 2 3 34444444444544 3677
Q ss_pred HHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 109 ~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
++++....+.... +. ......|..+.-+|... ....++++.+++..+.+ +-|..+.-.+.--|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 7777777666651 11 22345566666565532 22356788888888765 223333333444577
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC------------------CCCHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------DPDHI 235 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------------~~~~~ 235 (596)
..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....+. |. .....
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHH
Confidence 888999999999998887556688889888888888899999888887765531 11 01123
Q ss_pred HHHHHHHHHH------H---c--------------CChhHHHHHHHHHH--------hcC---------CCC--C-----
Q 007613 236 TIGALMKACA------N---A--------------GQVDRAREVYKMIH--------KYN---------IKG--T----- 268 (596)
Q Consensus 236 ~~~~ll~~~~------~---~--------------g~~~~a~~~~~~~~--------~~~---------~~~--~----- 268 (596)
|+..++..+- . . ++..++......+. ..+ ..| +
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 4444443332 0 0 11222222221111 111 111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 269 -PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 269 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
...|......+.+.+..++|...+.+...... .....|......+...|...+|.+.|......+ +.++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 23466777888888999999877777765532 255667777777888999999999999888775 556778899999
Q ss_pred HHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 348 ACSNAKNWQKALE--LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 348 ~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|....+
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999887777 999999876 56789999999999999999999999988654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-05 Score=72.04 Aligned_cols=211 Identities=11% Similarity=0.011 Sum_probs=130.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3334455667778888888777653 334456666656666666 5677888887777654 445556766655555555
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc---CCh-
Q 007613 177 QV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV- 250 (596)
Q Consensus 177 ~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~- 250 (596)
+. ++++..++++.+.. +-|..+|+...-++.+.|+++++++.++++++.. ..|...|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccc
Confidence 53 56677777777654 3456677777777777777888888888777541 23344555544444433 222
Q ss_pred ---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 251 ---DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 251 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
++......++.... +.+..+|+-+...+... ++..+|.+.+.+....++. +...+..|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555665554 55667777777777663 3345577777776654433 55666777776664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-05 Score=83.09 Aligned_cols=227 Identities=12% Similarity=0.043 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHH
Q 007613 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (596)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (596)
+...|-..|.-....++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4567777888888888888888888888753 221 13467777777777777788888888887753 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (596)
+|..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+..+-+.|..++.++.+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788888889999999999999998887532 35677888888888888888888888887765211 1234455556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (596)
.+.|+.+.++.+|+.....- +.....|+..|+.-.++|+.+.+..+|++....++.|-. ..|.-.|..-...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78899999999998887643 445678999999999999999999999998887777653 345555555455555443
Q ss_pred HH
Q 007613 428 GL 429 (596)
Q Consensus 428 a~ 429 (596)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-05 Score=82.78 Aligned_cols=225 Identities=11% Similarity=0.155 Sum_probs=160.9
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (596)
....|-..+.-..+.++.+.|++++++.... +.+ -...|.++++.-..-|.-+...++|++..+.. -.-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3457888888888888899999988887753 222 13467777777777777778888888888752 234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
..|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+..+-+.|..++.+.+..- +-.-......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88888888999999999999888865 22456788888888888888888888888887631 11112334444555667
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 321 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 321 (596)
+.|+.++++.+|+...... +.-...|+.+|+.-.+.|+.+.+..+|++....++.|-. +.|...+..=-..|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 7888888888888887765 445678888898888889988999999988888776532 34444444333444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00018 Score=72.44 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=131.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
.+.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3445556677888888888777552 233456777788888888888888886542 35567778888888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
++.|.++-.+.. +.+.....|.+-..-.-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..++.+++.
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 888888876654 3344455566666666777888888877755432 22 3467788888888887776
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (596)
.+-.... -..|...+..-+...|++..|..-|-+.. -|.+-+++|-.++.+++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6532211 22455566677777888888877664432 35667778888888888877654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-06 Score=82.35 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445556666666666666666654 2555666666666666666666666553 5666666666666655
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.
T Consensus 470 ~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 55566666666553321 01111111223456666666666555544 444556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+.|.......+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 666665554322 34456666666666666666666666666655 3344455555555566666666666666555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=77.45 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=103.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (596)
.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45566666666666655543 3455666666666666666666666666666542 223455555555666666666666
Q ss_pred HHHHHHhhCCCCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 218 DVLAEMNAEVHPVD------PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (596)
Q Consensus 218 ~~~~~~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 290 (596)
..++.-+....... ++...-.. +.......+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 66655543210000 00000000 0000111112222233222 222223445555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
.|+..+...+. |..+|+.|...++...+..+|+..|.+.++.... =+.+...|.-.|...|.+++|.+.|-..
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 55555544332 4445555555555555555555555555543211 1222333444455555555555544433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-06 Score=82.19 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
..+...+...|....|..+|+++. .|..+|.+|...|+..+|..+..+..++ +||...|..+.+...
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence 444555556666666666665543 3555555666666666666655554432 455555555555544
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
...-+++|.++++....+ +-..+.......++++++.+.|+.-.+...- -..+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 444455555555544322 1111112222345666666666554443221 33455555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.|....... +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 665555442 3345556666666666666666666666666544 3334445555555556666666666665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0016 Score=66.95 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHHcCChhHHHHHHHH--------HH--hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------
Q 007613 241 MKACANAGQVDRAREVYKM--------IH--KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK------------- 297 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~--------~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------- 297 (596)
+..|-+.|.+.+|+++--. +. +.+...|+...+.-.+.++...++++|..++-...+
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777664211 11 223334566666666777777777766665532211
Q ss_pred -------------CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 298 -------------KGVIPDE----VFLSALIDFAGHAGKVEAAFEILQE 329 (596)
Q Consensus 298 -------------~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 329 (596)
++-.|+. ..+..+...|.+.|.+..|-+-|.+
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 1112333 3455666778888888877666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=69.54 Aligned_cols=204 Identities=10% Similarity=0.077 Sum_probs=93.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh--h
Q 007613 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV--D 251 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~ 251 (596)
.++.++|+.+.++++... +-+..+|+..-.++...| ++++++..++++.... +.+..+|+.-.-.+.+.|+. +
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhH
Confidence 344445555555544431 112233333333333333 3455555555544321 11222333322223333331 3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GK----VEAAF 324 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~a~ 324 (596)
++..+++++.+.+ +.+..+|+...-.+...|+++++++.++++.+.++. |...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 4455555555554 445555665555555666666666666666655544 444444444333332 11 13444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 325 EILQEAKNQGISVGIISYSSLMGACSNA----KNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
+....++... +-|...|+.+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5554555443 44555666665555552 23344555555554432 2344455555555553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0015 Score=64.09 Aligned_cols=406 Identities=11% Similarity=0.130 Sum_probs=244.3
Q ss_pred hhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHHH
Q 007613 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (596)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (596)
+.++.+|+.|+ +...++++...++++...- |....+....++.-...++++...++|.+.. .-+...|...|.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34667899998 4569999999999998765 6565555555666666788999999998643 346777887776
Q ss_pred HHHhc-CChHHH----HHHHHHH-HHcCCCCC-HHHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCCCHhh
Q 007613 101 VCASS-KDSEGA----FQVLRLV-QEAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (596)
Q Consensus 101 ~~~~~-g~~~~A----~~~~~~m-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (596)
---+. ++...+ .+.|+.. .+.|+.+- -..|+..+..+ ....+++...++|.++....+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 44332 333332 2233333 33454332 23455555433 344566778888888876432211222
Q ss_pred HHH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHhccC---
Q 007613 165 YGA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (596)
Q Consensus 165 ~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (596)
|+- =|+.. -+...+..|.++++++.. .|+..+..+ |-.+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 221 11111 123456777788777653 343222222 433443221111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHH-HHHH----HHHHHHcCCh-------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 212 ---AV--DRAFDVLAEMNAEVHPVDPDHIT-IGAL----MKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 212 ---~~--~~a~~~~~~~~~~~~~~~~~~~~-~~~l----l~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
.. ....-.+++...- .+..|+..- +... -+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 133444321 1111 1234444544 445555555444332333344444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007613 275 AINCCSQTG---DWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (596)
Q Consensus 275 li~~~~~~g---~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (596)
+.+.--..- ..+.....+.+++.. ...| ..+|...+..-.+..-++.|..+|.++.+.+..+ ++.+.++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 443322222 255666666666543 2333 3567778888888888999999999999988766 788899999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (596)
| .++.+-|.++|+-=.+. ...+..--+..++-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 7 67889999999965443 1234445567778888889999999999999988777764 679999999999999999
Q ss_pred HHHHHHHHHH
Q 007613 428 GLMLLSQAKE 437 (596)
Q Consensus 428 a~~~~~~~~~ 437 (596)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-05 Score=76.07 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=171.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (596)
-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+.. +-|....-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3678899999999999998875 5578899999999999999999999999999875 5567888888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 007613 181 AFGAYGIMRSKNVKPDRVVFNALI-----------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (596)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (596)
|+..++..+.... . |..+. ..+.....+....++|-++... .+..+|..+...|.-.|--.|+
T Consensus 372 Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~-~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ-LPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh-CCCCCChhHHhhhHHHHhcchH
Confidence 9999998865421 1 10010 1122223344556666666554 2434566677778888899999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
+++|...|+...... +.|..+||.|...+....+..+|+..|++.++.. |+ +.....|.-.|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999876 6788899999999999999999999999998863 43 2344556668899999999998887
Q ss_pred HHHH
Q 007613 329 EAKN 332 (596)
Q Consensus 329 ~~~~ 332 (596)
.++.
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 6543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0014 Score=68.73 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=154.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 218 (596)
..+-+++|..+|++. ..+....+.||. .-+..++|.+.-++.- .+..|+.+..+-.+.|.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 344445555555443 233444444443 2344455544433322 24567777777777788777777
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
-|-+. .|...|.-++....+.|.+++-.+.+....+....| .+=+.||-+|++.++..+..++..
T Consensus 1126 Syika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1126 SYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc-----
Confidence 66432 244567777888888888888888777766655444 344577778888877766544321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (596)
-||......+.+-|...|.++.|.-++.. +.-|..|...+...|+++.|...-++. .+..+|.
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 35666677777777778888777777653 445677777788888888887665544 3667888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
.+-.+|...+.+.-| +|....+.....-..-++.-|...|-+++...+++..
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 888888776655433 3333333344455666777777777777777666544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-05 Score=67.90 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
..+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.|++++|..-|.+..+.. .-+....|.|.-.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHH
Confidence 33334444444455555555444444332 4444444444444445555555444444444432 122333444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 180 L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4444555544444444432 113333334444444444444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00038 Score=70.31 Aligned_cols=311 Identities=18% Similarity=0.186 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
+.+++|...|-.- |. -...|..|....++++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++-.
T Consensus 545 kkfk~ae~ifleq---n~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~--- 613 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQ---NA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE--- 613 (1636)
T ss_pred hhhhHHHHHHHhc---cc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc---
Confidence 4566666665321 11 12345556666677777766432 2333223334445555555565555544311
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC--------
Q 007613 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------- 226 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------- 226 (596)
.+-. --+-|+.|.+.|.+..|.+.-..=.. +..|......+..++.+..-+++|-.+|+.+..-
T Consensus 614 -----sdgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 614 -----SDGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred -----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHH
Confidence 1111 12456667777777666554321111 1224444444444555444455555555443210
Q ss_pred ------------CCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 227 ------------VHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 227 ------------~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
...++..+++. .....-+...|+++.|...|-+.. ..-..|.+-.....|.+|+.+++
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 00000001000 001111222333333333332211 11122344455677788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (596)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (596)
.++..... ..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|++++|.++-.+.. |....
T Consensus 757 niqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEAT 823 (1636)
T ss_pred Hhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhH
Confidence 77766432 234667777888888888888888642 245567788888888888888766654 22334
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
...|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+..+++.++-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 5556666666778888888887775543 3443 255677788877777766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-05 Score=71.83 Aligned_cols=185 Identities=11% Similarity=0.015 Sum_probs=127.8
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-Hh-
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VH- 163 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~- 163 (596)
+.....+..+...+.+.|++++|...++.+.... +.+. .++..+..++.+.|++++|...++++.+.. |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677778888889999999999999987753 2222 466778888999999999999999988753 32 22
Q ss_pred --hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC
Q 007613 164 --TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (596)
Q Consensus 164 --~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (596)
++..+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .. ....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH--------
Confidence 455555556554 6788889998888866 3432 22322211100 00 0000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678899999999999999887632 234678889999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-05 Score=66.98 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
...|..+...|...|++++|...|++..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al 100 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQAL 100 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-05 Score=69.55 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...+..+...+.+.|++++|...|+++... .|+ . .++..+...+.+.|++++|...|+++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444555555555666666666666655543 222 1 24455555555566666666666665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=64.14 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=149.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH-HHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (596)
+++.+..+.+..++..|++++..-.++. +.+....+.|..+|-...++..|-.-++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455556666666665555543 234555555666666666666666666665543 333333321 122334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (596)
+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++... +.+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-----en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-----ENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-----CCccchhccchheeeccccHH
Confidence 555666666666555432 121111111111 1234555555555555432 122223333333344556666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-----LIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~ 326 (596)
.|.+-|+...+-+--.....||.-+. ..+.|+++.|++...++.++|++-.+. ++. .+++ ...|+ -..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccc---hHHH
Confidence 66666655554432223344444333 334455666666666666655541110 000 0000 00000 0000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007613 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (596)
+... -+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- ..+++.+..+-+.-+....
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 0000 0112333334456788888888888777521 1234556654433222 2344555555455555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 406 CPNTITYSILLVACERKDDVEVGLMLLSQ 434 (596)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (596)
+-...||..++-.||+..-++.|-.++.+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23457888888889988888888777643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-05 Score=65.82 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~ 325 (596)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444443 444445555555555555555555555554444322 33344444433 233343 245555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
++++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555544443 22344444444444455555555555554444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0045 Score=63.80 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=149.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-ChHhHHHHHHHHHhcCChHHHHHH
Q 007613 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (596)
Q Consensus 36 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 114 (596)
+..|-+++|..+|.+..+-+ ++-.++...|.+++|+++-+.--.- =..||.....-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 35566666666666665544 2223344556666666654321110 012333333334445555555555
Q ss_pred HHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 115 LRLV----------QEAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 115 ~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
|++. .... -..|...|.-...-+-..|+.+.|+.+|..... |-++++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 5421 1110 012333344444444455666666666655442 55566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH----------
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---------- 245 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---------- 245 (596)
|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+... +...|..|-
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-----------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCHHHHHHH
Confidence 77777766644432 455666677788888888888877776542 222222221
Q ss_pred ---Hc--CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHH
Q 007613 246 ---NA--GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--------MTKK--GVIPDEVFLSAL 310 (596)
Q Consensus 246 ---~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~--~~~p~~~~~~~l 310 (596)
.. .+.-.|-++|++.. .-....+..|-+.|.+.+|+++--+ +... ....|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 12223333443321 1122334557777888777765321 1222 233466777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007613 311 IDFAGHAGKVEAAFEILQEAKN----------QGI----------------SVGI----ISYSSLMGACSNAKNWQKALE 360 (596)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~li~~~~~~g~~~~A~~ 360 (596)
.+.++...++++|..++...++ +|+ .|+. .....+.+.|.+.|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 7777888888888777665432 111 1222 234556667777888777777
Q ss_pred HHHHH
Q 007613 361 LYEHM 365 (596)
Q Consensus 361 ~~~~m 365 (596)
-|.+.
T Consensus 1167 KfTQA 1171 (1416)
T KOG3617|consen 1167 KFTQA 1171 (1416)
T ss_pred HHhhh
Confidence 66554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00015 Score=64.61 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=76.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+-..+...|+-+....+...... ....|.......+....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555444444444321 112233333445555555555555555555555544 45555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555544322 33344444444555555555555555554443 224444444555555555555555544
Q ss_pred HH
Q 007613 363 EH 364 (596)
Q Consensus 363 ~~ 364 (596)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 33
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00038 Score=74.58 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhc
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (596)
..-....+.+.+.+++++|+++.+...+.. |....++...+.++.+.++.+++..+ .++......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 333334444448999999999999888776 55555554444455555554443322 444444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
.++.....+...|... .-+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5554444455555543 3345577788888888888888888888888876 66788888888888888 888888888
Q ss_pred HHHHhC
Q 007613 186 GIMRSK 191 (596)
Q Consensus 186 ~~m~~~ 191 (596)
.+....
T Consensus 173 ~KAV~~ 178 (906)
T PRK14720 173 KKAIYR 178 (906)
T ss_pred HHHHHH
Confidence 777643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-05 Score=64.86 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666667777777766666554 4456666666666666777777777776666553 4456666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007613 175 AGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (596)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 67777777776666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00068 Score=60.44 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=51.0
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+.+..+++-|.+.+++|... .+..|.+.|..++.+ .+.+.+|.-+|+++.+.- +|++.+.+-...++...
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHh
Confidence 34444555555555555431 223333434333332 233555555555554432 45555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (596)
|++++|..+++..+.+... +..+...++-.....|..
T Consensus 221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 5555555555555554433 444444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0027 Score=61.83 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=162.4
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHH---cCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCC------CCCh
Q 007613 24 DVSEQLHSYNRLIRQGR-ISECIDLLEDMER---KGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~-~~~A~~~~~~m~~---~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (596)
-.+.+-.-+..|.+.|. ..-..+.|+++.. .+.-++.. ..|- ....++.++...-++++ .|+.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 35677888888999984 4555778888874 22222221 1121 12234555555555555 3455
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..+...+.+......-..+..++....+. .-...-|..-+. +...|++++|+..++.++..- +.|+..+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55556665544333333333333222221 112233444443 447889999999999988763 55677777888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChh
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (596)
.+.++..+|.+.++++... .|+ ...+-.+..++.+.|+..+|.+++++.... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999977 566 556667889999999999999999988764 3556778999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
++..-.. .+|...|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 7765433 4566778999999888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0048 Score=60.10 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (596)
.+.-..-.+...|++++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+.... +......-.+..+|.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence 3333444456678888888888887765332 55666666777888888888888888887764 222556667777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (596)
+.|+..+|..+++...... +-|...|..|..+|...|+..+|.....+ ++...|+++.|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHH
Confidence 8888888888887776543 55677888888888888887777655443 3456788888888
Q ss_pred HHHHHHHcC--CCCCHHHHHHHHHH
Q 007613 431 LLSQAKEDG--VIPNLVMFKCIIGM 453 (596)
Q Consensus 431 ~~~~~~~~g--~~p~~~~~~~li~~ 453 (596)
.+....+.. ..|+..-+...|+.
T Consensus 447 ~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 447 FLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHH
Confidence 777776541 23444444455544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-05 Score=62.99 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
+...|++++|...|..+.... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444333332 2233333334444444444444444444443322 22333333333344444444444
Q ss_pred HHHHHHHH
Q 007613 394 MEVLSDMK 401 (596)
Q Consensus 394 ~~~~~~m~ 401 (596)
...|+...
T Consensus 112 i~~~~~Al 119 (144)
T PRK15359 112 REAFQTAI 119 (144)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00064 Score=72.08 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=138.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (596)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (596)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45567788888899999999999999999998875 556778888999999999999999999999887654 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
+..++.+.|++++|..+|+++...+ +.+..++.++...+-+.|+.++|...|+...+.. .+-...|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8888899999999999999999854 4557888899999999999999999999988653 345566665543 3
Q ss_pred hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 007613 390 LPKTMEVLSDMKSLG----LCPNTITYSILLVACERK 422 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~ 422 (596)
...-..+++++.-.+ ...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344456666664433 222333444555444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00091 Score=70.94 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (596)
+.....+=.+.+..|..++| .+++.+.. .++..........+++--....... ...+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 33344444455666766665 45555554 2333334434444444333333332 3556888989999
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
...+.|.+++|..+++...+ +.|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|+
T Consensus 95 i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999985 4666 4566777889999999999999999999987 7778889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+...-|+.++ +++..-...++.
T Consensus 170 ~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 170 SEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred hHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHH
Confidence 99999999999985443 57889999999999999999999999998764 34455555544 334444556666
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHcC
Q 007613 365 MKSI----KLKPTVSTMNALITALCDG 387 (596)
Q Consensus 365 m~~~----~~~~~~~~~~~li~~~~~~ 387 (596)
+.-. |....+.+...+|.-|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 242 LGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cCcccccCCCceeeeeHHHHHHHHhhc
Confidence 5432 2223344556666666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0021 Score=69.04 Aligned_cols=239 Identities=8% Similarity=0.034 Sum_probs=135.2
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456677888888888888899998888866654 3442 3333333456666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
++.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 2233333334433333333444332 234466677777778888888888888777541 33466677777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
++++|++++.+.... |...+++..+.++|.++....+. |...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 777777777766553 44555666677777766665322 221222221
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
+.+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 111123344445555666666666666666666543 234444555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=61.07 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (596)
.+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...+++..+.+ +.+...+..+...|...|++++
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3333344444444444433332 2233333334444444444444444444433322 2223333333334444444444
Q ss_pred HHHHHHHHH
Q 007613 393 TMEVLSDMK 401 (596)
Q Consensus 393 A~~~~~~m~ 401 (596)
|+..|++..
T Consensus 104 A~~~~~~al 112 (135)
T TIGR02552 104 ALKALDLAI 112 (135)
T ss_pred HHHHHHHHH
Confidence 444444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0051 Score=55.05 Aligned_cols=246 Identities=13% Similarity=0.057 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
.-.|.+..++..-...... +-+...-.-+-++|...|.+..... +... +-.|.......+......-++.+.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~---~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE---GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc---ccCChHHHHHHHHHHhhCcchhHH
Confidence 3346666665554443332 1233333345566666666543322 2211 112333332222222222333332
Q ss_pred H-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 253 A-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 253 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
- ..+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344444444434443444444566788888888888776521 22233333344566777888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 332 NQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+-. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.|.+..++...|++++|..++++..... .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 653 55666656655543 45678888888888764 36888888888888888888888888888887753 33
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 007613 408 NTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~ 437 (596)
++.|...++-.-...|.. +...+.+.+++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566666555555555554 334455566655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-06 Score=51.07 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.021 Score=59.88 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQ---KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 342 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
-+.|++.+.+.++.. +|.-+++.-.... +.|..+--.+|+.|+-.|-+..|.++|..|.-..+.-|...|.. ..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHH
Confidence 356667777777654 3333444333322 23444445567777777888888888777765555555544433 233
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~ 436 (596)
+...|++..+...++...
T Consensus 517 ~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHhcccchhHHHHHHHHH
Confidence 445556666655555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.5e-06 Score=50.33 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (596)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00021 Score=59.63 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...|++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444445555555555555554432 3344445555555555555555555555544432 2234444444455555
Q ss_pred cCCHHHHHHHHHHHh
Q 007613 210 SGAVDRAFDVLAEMN 224 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~ 224 (596)
.|++++|.+.|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0034 Score=63.39 Aligned_cols=373 Identities=12% Similarity=0.104 Sum_probs=200.7
Q ss_pred HHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------HHhcCChhHH
Q 007613 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT----------CAKSGKVDAM 146 (596)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----------~~~~g~~~~a 146 (596)
+++|.++.+. .|.+..|..+.......-.++-|...|-+... -+.......|-.. -+--|++++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4566665554 45566788777766666667777776654432 1111111111111 1224788888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
.++|-++-++. .-|..+.+.|++-.+.++++.--.. .-..-...|+.+...++....+++|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776542 4566777888888877776542111 0011245788888888888888888888865421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007613 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (596)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (596)
....+.++.+..++++-+.+-..+ +.+....-.+..++...|.-++|.+.|-+-- . |
T Consensus 825 -----------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p--- 881 (1189)
T KOG2041|consen 825 -----------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P--- 881 (1189)
T ss_pred -----------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c---
Confidence 123456666666666655554443 3344566777888888888888877664321 1 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKS---- 367 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~---- 367 (596)
...+..|...+++.+|.++-+...- |.+.+ ..--|..+.+.|+.-+|.+++.+|.+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2344566677777777666543211 11111 11234566777877777777777764
Q ss_pred CCCCCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCCCHHH--HHHHHHHHHhcC
Q 007613 368 IKLKPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCPNTIT--YSILLVACERKD 423 (596)
Q Consensus 368 ~~~~~~~~----~~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p~~~t--~~~ll~a~~~~g 423 (596)
.+.++-.. ...+ |+.-+ -++|..++|..+++.-... +.---... |..|..--...|
T Consensus 956 K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 956 KYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 22222111 1111 11111 1467777887766553211 01111223 334444455678
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHH-HHH-hhHHHHHHhhhhhhhccCCCccchhhhHHHHHHHHHH
Q 007613 424 DVEVGLMLLSQAKED-GVIPNLVMFKCIIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492 (596)
Q Consensus 424 ~~~~a~~~~~~~~~~-g~~p~~~~~~~li~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 492 (596)
.++.|.+.--.+.+. .+-|...+|+.|-- +|+ |.+.-|-.-.-.+..|+.........+..+|+++|.+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhcc
Confidence 888887765555543 45666667764432 222 2233332222222233332222233455678888864
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0062 Score=54.13 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 007613 176 GQVAKAFGAYGIMRS---KN-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (596)
Q Consensus 176 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (596)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++++... ++.+..+-..-...+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhch
Confidence 345556666555542 22 3344332 334445555666667777777666553 211111111111223345666
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (596)
++|.++++.+.+.+ +.|.+++-.-+...-..|+--+|++-+....+.-. .|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666666655 44555555555555555555566665555555422 25566666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 007613 331 KNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKS 367 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 367 (596)
.-.. |.++..+..+.+.+...| +.+.|++.|.+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5443 334444444444433332 23445555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=48.50 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (596)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.3e-06 Score=48.91 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.038 Score=58.63 Aligned_cols=183 Identities=9% Similarity=0.044 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007613 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (596)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (596)
...|...|-+..+.. .-=...|..|...|+...+...|.+.|++..+.. ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 455555555544432 1124567788888887778888888888877664 34566777778888888888888877433
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (596)
Q Consensus 223 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (596)
..+.. ....-...|....-.|.+.++...+..-|+...+.+ +.|...|..+..+|..+|++..|.++|.+..... |
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 22210 000111122233345666777788888888777765 5667788888888888888888888887776653 3
Q ss_pred CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007613 303 DEVFLSAL--IDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 303 ~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 332 (596)
+. +|... ...-+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22222 2234567788888877776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00069 Score=66.35 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3333334444444444444444432 22 22223444444444444444444444321 2233344444444445555
Q ss_pred hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQA 435 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (596)
++.|+.+.+++.. ..|+. .+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555544 23333 24555555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=65.12 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=48.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (596)
++..+...++++.|..+|+++.+.+ | .....++..+...++-.+|.+++++..+.... |...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3333334444444444444444432 1 12223334444444444444444444433221 33333333333444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444432 223334444444444444444444444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=55.79 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~ 363 (596)
...+.|.+.|+.++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0021 Score=54.21 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=48.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 179 (596)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 222 11222233444455555555555555554431111 112333444445555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (596)
+|+..++...... .....+......+.+.|+.++|...|+
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555554432221 122233344445555555555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00043 Score=68.05 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (596)
+.+......+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4444555555665555566666666665555431 11112334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666655544444444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.027 Score=50.18 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
|..++-+...+|+.+.|...++.+...- |.+. +-..-.-.+-..|++++|+++++.+.+.+ +.|.+++--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3334444445555555555555544331 2111 11111111223445555555555555443 233333333333333
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
..|+.-+|++-+..... .+..|...|.-+...|...|++++|.-.++++.-
T Consensus 132 a~GK~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HcCCcHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33333344444444333 1333444444444444444444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00063 Score=66.93 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34455555556666666666666666666554322221122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (596)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555444555555555554444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.1e-05 Score=45.39 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.2e-05 Score=44.83 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00061 Score=52.29 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHhhHHH
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (596)
..|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566788888888888888887 778888888887776542 12234555666666666666666666
Q ss_pred HHHHHH
Q 007613 168 LIDGCA 173 (596)
Q Consensus 168 li~~~~ 173 (596)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0025 Score=51.57 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=7.7
Q ss_pred HHHHhccCCHHHHHHHHHHH
Q 007613 204 ITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~ 223 (596)
..++.+.|+++.|.+.|+.+
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHhhccHHHHHHHHHHH
Confidence 33333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00084 Score=51.54 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVF 200 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~ 200 (596)
-...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455556667899999999999999998 889999999998877643 244677888888888888999999
Q ss_pred HHHHHHHhc
Q 007613 201 NALITACGQ 209 (596)
Q Consensus 201 ~~li~~~~~ 209 (596)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=50.19 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444445555555555555554432 2233444445555555555555555555554432 223344455555555555
Q ss_pred CHHHHHHHHHHHH
Q 007613 177 QVAKAFGAYGIMR 189 (596)
Q Consensus 177 ~~~~A~~~~~~m~ 189 (596)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=54.16 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHH
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
.|...|++++|..+|+-+...+ |++..++..+...+...|++.+|+..|... .+.|+..+-.+...+...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 3447777777777777777776 677777777777777777777777777653 24456666666777777777777
Q ss_pred HHHHHHHHHH
Q 007613 111 AFQVLRLVQE 120 (596)
Q Consensus 111 A~~~~~~m~~ 120 (596)
|++.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=49.63 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (596)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334445555566666666666555432 2223445555555555566666666666555431 22334455555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 007613 423 DDVEVGLMLLSQAKE 437 (596)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (596)
|+++.|...+.+..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.004 Score=50.33 Aligned_cols=97 Identities=13% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALID 170 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~ 170 (596)
+..+...+.+.|++++|...+..+.+.... .....+..+..++.+.|++++|.+.|+.+....- +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555556666666666665543210 0123444455555666666666666665554310 011334555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (596)
++.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.19 Score=53.04 Aligned_cols=225 Identities=10% Similarity=0.007 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHH
Q 007613 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
-++..+++..|++....+.+.. |.......+-.-...+.|..++|..+++.. ...|..|...+-..|...++.++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 3457788899999998888875 433333222222344667788888777653 23477788888888899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAK 180 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~ 180 (596)
|..++++.... -|+......+..+|.+.+++.+-.+.=-++-+ ..+.+...+-++++.+.+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999988765 56677778888888888877653333222222 124456666666666654321 345
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007613 181 AFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (596)
Q Consensus 181 A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (596)
|.+.++.+.+.+ -.-+..-...-...+...|++++|..++..-.... -...+...-+.-+..+...+++.+..++-.+
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 666677776554 11112222223344556788899988884333221 1223334445566777888888888888888
Q ss_pred HHhcC
Q 007613 260 IHKYN 264 (596)
Q Consensus 260 ~~~~~ 264 (596)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 87776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0044 Score=60.95 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007613 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
..|++++|+..|.++.+.. +.+...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444444444432 2233344444444444444444444444444332 1233344444444444444444444
Q ss_pred HHHHHHh
Q 007613 396 VLSDMKS 402 (596)
Q Consensus 396 ~~~~m~~ 402 (596)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.004 Score=58.97 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
|..++...-+.+..+.|..+|.+..+.+ ..+..+|.....+-.+ .++.+.|.++|+...+. +..+...|...+.-+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444322 1122223222222112 23333355555444432 2334444444444444
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+++....+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544432 21111 2455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0038 Score=59.15 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 278 (596)
+|..+++..-+.+..+.|.++|.+.... .....+.+...+++. |...++.+.|.++|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4444555555555555555555555422 112222222222221 11123444455555555444 24444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
+.+.++.+.|..+|++.... + |.. ..|...+..=.+.|+++...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555443 1 122 25555555555555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=56.80 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCChHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 007613 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (596)
..|-.+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 3455556666665553 35666666677777777777777777777776643 2221 11111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
..- .-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 112 -----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 123456677888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0028 Score=55.21 Aligned_cols=100 Identities=11% Similarity=0.207 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007613 338 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (596)
Q Consensus 338 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (596)
+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 45556666665543 35555566666677777777777777777766554 2211 01111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
..- .-.+.+-|++++++|...|+-||..++..|++.+|+
T Consensus 112 ---F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 112 ---FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred ---hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 101 112334566667777777777777777777766665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0062 Score=59.90 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=53.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (596)
+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666666666553 3345566666666666666666666666666543 33455566666666666666666
Q ss_pred HHHHHHHHhC
Q 007613 182 FGAYGIMRSK 191 (596)
Q Consensus 182 ~~~~~~m~~~ 191 (596)
+..|++....
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0076 Score=50.13 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
.-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|+..+-.+..++.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444555666666666666665543 3344455555555666666666666666665554 3455556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 007613 175 AGQVAKAFGAYGIMRS 190 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~ 190 (596)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.016 Score=50.56 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555444322211 2344444455555555555555555555432 2233444444445
Q ss_pred HHhcCCH
Q 007613 349 CSNAKNW 355 (596)
Q Consensus 349 ~~~~g~~ 355 (596)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.021 Score=58.80 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007613 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (596)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (596)
+...|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|...+++... +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 445666665555566777777777777776 346767777777777777777777777777766 3444333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.024 Score=58.37 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=101.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007613 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 329 (596)
...+.+...|...+.+..... ....|..+|++..+..+. ....+..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344677888988888865432 367899999999887543 4455555544443321 12333444443
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 330 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
.... ..+.+...+..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 234456777777777777899999999999998864 6888899999999999999999999999876 5666
Q ss_pred HHHHH
Q 007613 409 TITYS 413 (596)
Q Consensus 409 ~~t~~ 413 (596)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0046 Score=56.47 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (596)
+.+.+++++|+..|.+.++.. +.|.+.|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777766653 34555666666677777777777766666655 3444 3567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
|.+.|++.++ ++|+..+|..=+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 7777777666 66776666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00085 Score=50.39 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (596)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444443210 1222222344444444444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=50.61 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (596)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666666777777777777766543222 12356666666777777777777777666543 23344455555
Q ss_pred HHHH
Q 007613 347 GACS 350 (596)
Q Consensus 347 ~~~~ 350 (596)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.02 Score=49.84 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777778888999999999988876542222 3577788888888899999998888887753 3356666777
Q ss_pred HHHHHhcCCHHHHHH
Q 007613 169 IDGCAKAGQVAKAFG 183 (596)
Q Consensus 169 i~~~~~~g~~~~A~~ 183 (596)
...|...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777777554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.038 Score=52.58 Aligned_cols=150 Identities=12% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (596)
.+..|...|++..|-..+. .+...|... |++++|.+.|++..+ .+ .+. ..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3445566666666644443 455566666 888888888887764 22 111 234566778
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHH
Q 007613 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPNL--VMFKCIIG 452 (596)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~--~~~~~li~ 452 (596)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...||...|.+.+++.... ++..+. .....||.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 899999999999999998764322 2222 2333444667789999999999998753 333332 33455565
Q ss_pred HHHhhHHHHHHhhhhhhhccCCCcc
Q 007613 453 MCSRRYEKARTLNEHVLSFNSGRPQ 477 (596)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (596)
+|-. .....+.+++..|+.+.+.
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS--
T ss_pred HHHh--CCHHHHHHHHHHHcccCcc
Confidence 5432 1122344566667666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=46.69 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (596)
|++.|++++|++.|+++.... |.+..+...+..++...|++++|...++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888888888888888877 6677777777777777888888888887765 3443344333
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.27 Score=47.32 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=96.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007613 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (596)
.++...|+.++|..+--.+.+.+. .+ .+..+++ ++.-.++.+.|...|.+-+..+ |+...-. .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~ 241 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK----------S 241 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH----------h
Confidence 345566777777777666666542 22 2233332 3334566777777777766553 3322211 1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEV 396 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (596)
.-.-.+.+..+...| +-..+.|++..|.+.+.+.+.. +.+++...|........+.|+..+|+.-
T Consensus 242 ~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred HhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 111122222333333 2345788888888888887753 3445566666667777788888888887
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 397 LSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 397 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
-++... +.|.- ..|..-..++.-.+++++|.+-++...+.
T Consensus 310 c~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 310 CNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777654 22211 11222233455578888888888888764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=47.71 Aligned_cols=176 Identities=9% Similarity=-0.026 Sum_probs=96.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH- 316 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 316 (596)
...+.+.|++++|.+.|+.+.... +.+.... -.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456677777777777776654 2223332 34556677777777777777777665433222233333333221
Q ss_pred -cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 317 -AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (596)
Q Consensus 317 -~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (596)
.+ + ...|+..|+.+ +.-|=.+.-..+|...+..+... -...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 10 1 12233333333 33333334445555544444320 01111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
-.+..-|.+.|.+.-|..-|+.+.+. +.+........+..++...|..++|......+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 23455677888888888888887764 222334556677788888888888877766543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=49.49 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 007613 275 AINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~ 293 (596)
+..+|.+.|++++|+.+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333344444444444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=47.92 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.+...|.+.|.+..|..-|+.+.+. +.+......-.++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677777777777777777753 112233455567777777787777777666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=50.43 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
..|..+...+...|++++|+..|+........+ ...++..+..++...|++++|.+.++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666777777777777776543221 12466667777777777777777777766542 223444555555
Q ss_pred HHH
Q 007613 171 GCA 173 (596)
Q Consensus 171 ~~~ 173 (596)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.037 Score=44.35 Aligned_cols=90 Identities=20% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 007613 277 NCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNA 352 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 352 (596)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++........ .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555555554322 123333444555555555555555555443211 0111222222344455
Q ss_pred CCHHHHHHHHHHHH
Q 007613 353 KNWQKALELYEHMK 366 (596)
Q Consensus 353 g~~~~A~~~~~~m~ 366 (596)
|+.++|...+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.23 Score=44.67 Aligned_cols=133 Identities=11% Similarity=0.025 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH---
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI--- 169 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 169 (596)
..-+.++..+...|.+.-...++...++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556667777778888888888888877666677788888888888888888888888776543233444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 170 --DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 170 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
..|.-.+++..|.+.|.+....+ +.|++.-|.-.-+..-.|+..+|.+.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555677888888888777654 334555554444444567888888888888754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=54.27 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+... +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456688888888888888875 5567777777888888888888888877777542 22346788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 394 MEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 394 ~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
++.|++.++ +.|+..+|-.=|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888888876 67887776654443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.26 Score=44.39 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 346 (596)
.+.+.++..+.-.|.+.-....+++..+.....++...+.+.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44566677777777777777788887777656677777888888888888888888888776654334433333333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (596)
Q Consensus 347 --~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (596)
..|.-.+++..|...|.++.... ..|+...|.-.-++.-.|+..+|++.++.|.. ..|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 34455677778888887777543 34555555444444456788888888888876 356655544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.043 Score=50.61 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 338 GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
|...|-.|...|...|+.+.|..-|....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0033 Score=44.86 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555554444432 223444444444444555555555544444443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.41 Score=46.12 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007613 277 NCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (596)
+-..+.|++..|.+.+.+.+... ..|+...|-....+..+.|+.++|+.--+...+.. +.-...+..-..++.-.+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 34556777777777777766532 34455556556666667777777777766665543 000112222233444556
Q ss_pred CHHHHHHHHHHHHhC
Q 007613 354 NWQKALELYEHMKSI 368 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~ 368 (596)
++++|.+-|+...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 677777777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.058 Score=43.21 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555543332 22333444455555555555555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.061 Score=54.27 Aligned_cols=257 Identities=13% Similarity=0.162 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 007613 126 DCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVK 194 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 194 (596)
....+.+-+..|...|.+++|.++ ++.+... ..+..-++..=.+|.+..+ +-+.+.-+++++++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455555667777877777554 2222211 1233345555566766554 34455556778888877
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHH------------HHHHh
Q 007613 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHK 262 (596)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------~~~~~ 262 (596)
|+... +...++-.|++.+|-++|.+--. + +..+.+|.....++.|.++. ++-.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~-----e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGH-----E------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCc-----h------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 87654 34456667888888888876422 1 22334444444444444433 21111
Q ss_pred --cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 263 --YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD------MTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 263 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
++++.. .+....+...|+.++|..+.-+ +.+.+- ..+..+...+..-+-+...+..|.++|..|-
T Consensus 699 WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 699 WARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 011111 1223344455665555544311 111110 1133344444444445555666666666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+. .++++.....+++.+|..+-+...+. .||+ |..-..-++...+++||-
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAq----------------- 824 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQ----------------- 824 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHH-----------------
Confidence 32 24566667777777777776665542 2332 222233333444444333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|+.+.|+-.+|.++++++..
T Consensus 825 -----kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 -----KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----HHHHHhcchHHHHHHHHHhhh
Confidence 244556666677777766654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0065 Score=42.86 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444432 1233344444444444444444444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.41 Score=45.54 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-ChHhHHHHHHHHHhcCC
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKD 107 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~ 107 (596)
....+.+-..|++++|...|.+..+...-..+. ....+.+.+|...+++..+. -+..|...+..|...|+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence 334444445677777777776654321000000 00112233444444443111 12234455555666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHH----CCCCC--CHhhHHHHHHHHHhcCCHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAMFEVFHEMVN----AGIEP--NVHTYGALIDGCAKAGQVAK 180 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~~~g~~~~ 180 (596)
+..|-.++.. +...|-.. |++++|++.|++... .| .+ -..++..+...+.+.|++++
T Consensus 110 ~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 110 FSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHH
Confidence 6655554443 44455555 778888888777654 22 11 13455667778888899999
Q ss_pred HHHHHHHHHhCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCC---
Q 007613 181 AFGAYGIMRSKNVKP-----DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQ--- 249 (596)
Q Consensus 181 A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~--- 249 (596)
|.++|++....-... +.. .|-..+-++...|+...|.+.+++......++..+ ......|+.++- .|+
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~ 252 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEA 252 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCC
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHH
Confidence 999998876543221 111 12233345666788888888888877543344333 233444555543 333
Q ss_pred hhHHHHHHHHHH
Q 007613 250 VDRAREVYKMIH 261 (596)
Q Consensus 250 ~~~a~~~~~~~~ 261 (596)
+..+..-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.59 Score=44.94 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
+.-|.-+...|+...|.++-++. . .||...|-..+.+++..+++++-.++-.. +-++.-|-.++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344455566666655554433 1 24666666666666666666655554321 11235566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
|+..+|..+...+. +..-+..|.++|++.+|.+.-.+
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655421 13345556666666666555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.062 Score=49.58 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (596)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (596)
+-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466677777777777777777777776666543 34555555555544332 23456666777766553 3344455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 201 NALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
..|...+...|++.+|...++.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666777777777777776653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0077 Score=42.46 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=6.1
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 007613 169 IDGCAKAGQVAKAFGAYG 186 (596)
Q Consensus 169 i~~~~~~g~~~~A~~~~~ 186 (596)
..++.+.|++++|...|+
T Consensus 38 g~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 38 GRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333333333333333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1 Score=46.39 Aligned_cols=341 Identities=12% Similarity=0.063 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-CChHhHHHHHH----------HHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007613 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMS----------VCASSKDSEGAFQVLRLVQEAGLKADCK 128 (596)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~----------~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 128 (596)
...++.++.......-.++-|...|-+..+ +.+.....|-. .-+--|++++|.+++-+|.++.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL----- 765 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL----- 765 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-----
Confidence 444556666666666677777777755431 22211111111 11224788999998887765532
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR----------------- 189 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 189 (596)
.|..+.+.|++-...++++.-- .+. +.-...|+.+...++....|++|.+.|..-.
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 3444455555555554443210 000 0012344444444444444444444443221
Q ss_pred ----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007613 190 ----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (596)
Q Consensus 190 ----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (596)
...++-+....-.+..++.+.|.-++|.+.|-+.. .| ...+..|...+++.+|.++-+...-..
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s------~p-----kaAv~tCv~LnQW~~avelaq~~~l~q- 908 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS------LP-----KAAVHTCVELNQWGEAVELAQRFQLPQ- 908 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc------Cc-----HHHHHHHHHHHHHHHHHHHHHhccchh-
Confidence 11123334444555566666666666666654321 12 123445555666666665544322111
Q ss_pred CCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 266 KGTPEV--------------YTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 266 ~~~~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
..+ .---|..+.+.|++-+|-+++.+|.+ ++.+|-..----++.+. -..+..++.+-.
T Consensus 909 ---v~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~ 984 (1189)
T KOG2041|consen 909 ---VQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKEL 984 (1189)
T ss_pred ---HHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 111 01123344455555555555555543 22221111000011111 111222233333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCC
Q 007613 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLC 406 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 406 (596)
+.....|...+... +...|-+.++-++.+..-+ ......|..|..-....|..+.|++.--.+.+. .+-
T Consensus 985 ~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~l 1054 (1189)
T KOG2041|consen 985 RKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFL 1054 (1189)
T ss_pred hhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcC
Confidence 33333332211111 1122222333333222111 122344455555566788899988765544432 356
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
|....|+.+.-+.+....+...-+.|-++.
T Consensus 1055 pP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1055 PPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred CHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 777778776655555444444444443333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=41.51 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDD 294 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 294 (596)
..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 333333344444444444444443333 223333344444444444 34444444333
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=41.41 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (596)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444555555555555555555555555443 223444555555555555 4555555555444
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.44 Score=42.71 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=8.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 347 GACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~ 366 (596)
..|.+.|.+..|..-++.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.43 Score=42.78 Aligned_cols=178 Identities=10% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
...+...|++.+|.+.|+.+..... +-...+.-.++.++.+.|+++.|...+++..+.-+.-....+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777765421 11234455666777777777777777777665432211122222222222111
Q ss_pred CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007613 319 KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
...... ...... .--...+..++.-|=.+....+|...+..+.+. =...--.+..-|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 111100 000000 000223445555555566666666665555421 11112235677888999999999
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007613 396 VLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (596)
Q Consensus 396 ~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~ 429 (596)
-++.+.+. -|+. .....++.++.+.|..+.+.
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99888774 3443 34567778888888877443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.091 Score=50.23 Aligned_cols=265 Identities=15% Similarity=0.065 Sum_probs=146.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--HH--CCC-CCCHhhHHHHHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VN--AGI-EPNVHTYGALIDG 171 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m--~~--~g~-~~~~~~~~~li~~ 171 (596)
-+|+.|+......+|+..++.| .-|. .+|..|.++|.-.+++++|++.+..= .. .|- .-...+-..|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3778888888888888888877 3343 34666677777778888887765321 11 000 0011122233344
Q ss_pred HHhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHhhC
Q 007613 172 CAKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAE 226 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~~ 226 (596)
+--.|.+++|+-.-.+ ..+.|-+ .....+..+...|...|+ ++.|.++|.+-++-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433221 1111210 112334445555544432 23344444332210
Q ss_pred CC--C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 007613 227 VH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK- 297 (596)
Q Consensus 227 ~~--~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 297 (596)
.. + --.--..|..|.+.|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 00 0 000112345555556666788888776654322 111 11234577788888888999999888876432
Q ss_pred ---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 298 ---KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 298 ---~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.|-. .......+|...|.-..+++.|+.++.+-... ...-....+.+|..+|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2211 12345566777777778888888888764321 112245677888888988888888887776554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.57 Score=39.96 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCCCCHHHH
Q 007613 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (596)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 237 (596)
.|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....++...|...++++.+... +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 3455455555556666666666666666655433344455555555555556666666666655543210 11122 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
..+...+...|...+|+.-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 33445555555555555555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.076 Score=49.46 Aligned_cols=23 Identities=22% Similarity=-0.015 Sum_probs=10.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.+...|...|++++|...|..+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.2 Score=42.88 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
+.+..+.-+...|+...|.++-.+. . -|+...|..-+.+|+..++|++-.++... +..++-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3445556666778888777775544 2 46788888889999999998877765432 234578888889999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (596)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 999988888887762 2 1 23355666777777776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.13 Score=47.94 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (596)
..|...+..+.+.|++++|...|+.+++. .|+. .++-.+...|...|++++|...|+.+...- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555545567777777777777665 3332 356666677777777777777777776541 011133444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.064 Score=44.96 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCChHHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+...|++++|..+|.-+..-+ +++..+...+...+...+++++|+..|... ...|+...-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 346777777777777777666 566666666666666667777777776542 233444445555666666777777
Q ss_pred HHHHHHHHH
Q 007613 112 FQVLRLVQE 120 (596)
Q Consensus 112 ~~~~~~m~~ 120 (596)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.98 Score=46.09 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007613 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (596)
Q Consensus 41 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (596)
+-+-+.-++++.++|.+|... ++...+.-.|.+.+|.++|++
T Consensus 616 ~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 333344445555555544332 233345556667777776664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.78 Score=39.18 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CCHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVY 272 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 272 (596)
.|+...-..|..+..+.|+..+|...|.+.... .+..|......+.++....+++..|...++.+.+.... .++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344444445556666666666666666665542 33444455555555555555555555555555443210 012223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
-.+...|...|++.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 33444444555555555555554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.042 Score=46.34 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333344444444444444444332 233444444444444444444444444433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.048 Score=39.37 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=18.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.|+...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444443333332 2233333333333334444444444443333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.052 Score=45.79 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhhHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHTYG 166 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 166 (596)
....++..+...|++++|..+.+.+.... |.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777889999999999999999875 67899999999999999999999999998753 58888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.056 Score=39.04 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
..|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56788899999999999998875 5577788888889999999999999999988763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=2.8 Score=43.91 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007613 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (596)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (596)
-.+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 33334444566666655544432 3455555555566666666665554433332 2344555566666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (596)
+.+||.+.+.+... .. -...+|.+.|++.+|.++-
T Consensus 759 n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666654321 11 2344555666665555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.37 Score=40.50 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChHhHHHHHH---HHHhc
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS---VCASS 105 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~---~~~~~ 105 (596)
-.|.+.++.++|+..|.++.+.|.-............+..+.|+...|...|+.+.. |-+.-=..-++ .+...
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 345689999999999999999987666666666666777788888889988887642 21110011111 24456
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (596)
|.++......+-+-..+-+.-...-..|.-+..+.|++..|.++|..+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 67776666665554444333334445555555677777777777777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.19 Score=40.75 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
...|+..+..+++.+|+..+++..|+++++..... .+++-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 34566666666666666666666666666666554 345555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.58 Score=47.26 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHH
Q 007613 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (596)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (596)
.+.....-|...+-+|+++++.++.+.-.-...+| ......+++++.+.|-.+.|+.+-. |. ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 45667777888888899988777765211111112 3335566777777788888877632 22 33445566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (596)
+.|+++.|.++... ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 78888888776542 34677888888888888888888888877542 5677777888888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+-+.....| -++....++.-.|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766665 2556666666678887777777553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.084 Score=47.85 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=66.5
Q ss_pred HHHhhCC--CCChHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 82 RFFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 82 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
+.|..++ +.|-.+|-+.+..+.. .+.++--...+..|.+.|+..|..+|+.|++.+-+..-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------ 122 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------ 122 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc------------
Confidence 3444444 3455566666655543 24555555666677777777777777777766533211
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007613 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (596)
.|.. .+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 123 ----iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 ----IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ----ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1110 1111111121 22345788888888888888888888888888877653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.12 Score=49.53 Aligned_cols=266 Identities=18% Similarity=0.066 Sum_probs=151.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 007613 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (596)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~li~ 205 (596)
.-+|+.|+....+.+|+..++.|.+ | ..+|..|.++|.-.+++++|++....= ..+ |-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998733 3 345677777888888899998764321 110 100 01122223334
Q ss_pred HHhccCCHHHHHHHHHHHh----hCCCCCCCCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHH
Q 007613 206 ACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~ 261 (596)
.+--.|.+++|.-+..+-+ +-+..+ .....+-.+...|...|+ ++.|.++|..=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444566666654322211 100011 112233344555544432 122333332211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
+.|- -..-..|..|.+.|.-.|+++.|+...+.=+ +-|-. .-...++.+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0011345666666777788998887665422 22211 123456777788888899999988887643
Q ss_pred H----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
. .| -.....+.-+|...|.-..++++|+..+.+-.. . ...-...++.+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 123345666788888888889999888775432 1 112245677788888988899888888776644
Q ss_pred h
Q 007613 402 S 402 (596)
Q Consensus 402 ~ 402 (596)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.24 Score=40.16 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHh-------------hCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY- 263 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 263 (596)
.++..++.++++.|+++...++++..- ....+..|+..+..+++.+|+..|++..|.++.+.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555543321 111234455555555555555555555555555544332
Q ss_pred CCCCCHHHHHHHHH
Q 007613 264 NIKGTPEVYTIAIN 277 (596)
Q Consensus 264 ~~~~~~~~~~~li~ 277 (596)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.3 Score=40.95 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=82.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
..++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+.-... +-.+.+.... +.+..+-..+..+-...|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e 344 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccc
Confidence 45678888888888888888887644543 2 223355666632221 1111222211 3456677777788888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 007613 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+..|..--+...+ ..|....|..|.+.-. ..|+-.++++.+.+.++.--+|.
T Consensus 345 ~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 345 FSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 8888777776665 5788888887777654 45999999999998887644444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.5 Score=41.50 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHH---HHHHhhCCCCChHhHHHHHHH--HHhcCC
Q 007613 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEA---FRFFKLVPNPTLSTFNMLMSV--CASSKD 107 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~li~~--~~~~g~ 107 (596)
+++++.+|-.+|.++.+.-.-. ....+.+.+++++-. ++++.- +..+++-.+ ...|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8999999999999987654211 112333444444432 223322 222232222 2334455444 346788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHhhHHHHH
Q 007613 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (596)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (596)
++.|++.+..-... +-.| |-..-+..+..+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888766543 2221 2222345677788889999999888887653 3447888888876
Q ss_pred HHHHh
Q 007613 170 DGCAK 174 (596)
Q Consensus 170 ~~~~~ 174 (596)
-++++
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 66655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.4 Score=37.23 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
..-+...|++++|..+|+-+...+.. +..-|..|..++-..+++++|...|......+ .-|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456778888888888877765544 55556666666677788888888887766554 23444445566777888888
Q ss_pred HHHHHHHHHHHh
Q 007613 356 QKALELYEHMKS 367 (596)
Q Consensus 356 ~~A~~~~~~m~~ 367 (596)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887775
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.2 Score=35.78 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
....+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555554422 4445555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.39 Score=47.45 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCcccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (596)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~ 55 (596)
....|++.......-..|.+.|++++|+..|++.++.+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556666666666677778888888888888887776
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.77 Score=46.39 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (596)
.-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 345666666666666666666543211 2233345666666666553322 2455676777766
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
.+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 77777777766666542 144555556666666666666655555541 4444455555566666
Q ss_pred HHHHHHH
Q 007613 288 ACSVYDD 294 (596)
Q Consensus 288 a~~~~~~ 294 (596)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.19 Score=45.67 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAK 436 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~ 436 (596)
+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3456788999999999999999999999999887753 33344444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=36.19 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
+..+...+........++.+...+ ..+...+|.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333334444444444444333 2333344444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.6 Score=39.68 Aligned_cols=286 Identities=15% Similarity=0.120 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHhhC---CCCChHhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHH
Q 007613 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (596)
.|+-..|+++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 35556666655432 23455555555554 3346999999999999985 22222 233344444578899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhc---cCCHHHHHHHH
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~ 220 (596)
.+.-+..-..- +.-...+.+.+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88887766542 3346778899999999999999999998776542 344433 22234433221 13455555554
Q ss_pred HHHhhCCCCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-C
Q 007613 221 AEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (596)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 298 (596)
.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+... .+.++...+ +.+.|+. ++.-+++..+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 44443 4555332 22345788999999999999999988754 444444333 3455543 3333333221 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007613 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (596)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (596)
..+| +......+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.++...+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4566777778888899998888776666554 577778877777664 459999999999998874 44445
Q ss_pred HH
Q 007613 377 MN 378 (596)
Q Consensus 377 ~~ 378 (596)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.3 Score=40.95 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC-hHhHH---HHHHHHHhcCCh
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFN---MLMSVCASSKDS 108 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~ 108 (596)
..++..|++.+|..+|+...... +.+......+...+...|+++.|..++..+|... ...+. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456677777777776666655 4444444555555666666666666666665211 11111 122333333333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcC
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g 176 (596)
.+...+-+..-.. +-|...-..+...+...|+.++|.+.+-.+.+.. -..|...-..|+..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333221 2244455555555666666666655444444321 1223334444444444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.078 Score=38.88 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
++.+...|...|++++|...|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444433
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.91 E-value=4.1 Score=39.81 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
.|--.+.+++.++.-.|+++.|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667778888888888888888888874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.096 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357888999999999999999999987642 122 22 45678888899999999999999998765
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.4 Score=38.38 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=67.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (596)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 35556666666665555442 22334445555566666666666666665543321111112122233333333333333
Q ss_pred HHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHH
Q 007613 218 DVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 286 (596)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..++..+.--|.-+
T Consensus 224 ~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 224 DLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 33333322 23 344444555566666666666655554444321 223345555666655555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=5.7 Score=42.26 Aligned_cols=174 Identities=12% Similarity=0.100 Sum_probs=98.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCChHhHHHHHHHHHhcCChHHH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 111 (596)
+.|++..-+..|+.+-+.-.... .....++...+..+...|++++|...|-+.. .-++ ..+++-+....+..+-
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHH
Confidence 34455555666665544322211 2234456666777778899999988876533 1121 2345556666677777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
-..++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+-+.+-.++|..+-.+...
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 7788888888854 44555678999999988887766655443 2211 11133455555566666666555433321
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
+......++ -..+++++|++.+..+
T Consensus 492 ----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 ----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 222223322 2345566666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.69 E-value=4.7 Score=39.44 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 101 VCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
.|-...+++.-.++.+.+...- +.-...+--...-++.+ .|+.++|++++..+....-.+++.+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3555556666666666655421 01111112222333344 566666666666644433355555665555554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.9 Score=40.55 Aligned_cols=402 Identities=11% Similarity=0.103 Sum_probs=215.6
Q ss_pred hhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHH
Q 007613 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (596)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (596)
......|..|+..+ ..+.+..+++.+...- |.-..++..+...-.+.|..+.+..+|++.. +-.+..|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44556787777433 3344555566666554 6666666777777777888999999998753 4566677776
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-
Q 007613 99 MSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK- 174 (596)
Q Consensus 99 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 174 (596)
+.-+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+|+++++. ....++..-.-|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 66544 457788888888887753 211 23556777887778888999999999998863 22334443333332
Q ss_pred --c------CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 007613 175 --A------GQVAKAFGAYGIMRSK---N-VKPDRVVFNALITACG-QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (596)
Q Consensus 175 --~------g~~~~A~~~~~~m~~~---g-~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll 241 (596)
. ...+++.++-...... + ..+....+..-+.--. ..+..+++...+.+.. ..--
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-------------~~~~ 262 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-------------SIHE 262 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-------------HHHH
Confidence 1 1222222222111110 0 0000111111110000 0011111111111000 0001
Q ss_pred HHHHHcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 242 KACANAGQVDRAREVYKMIHKYN-------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
.++-......+.+..|+.-.++- .+++...|...+..-...|+++.+.-+|++..-.- .-=...|-..+.-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHH
Confidence 11222222333333333332221 12245678888888889999999988888875421 11122344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChh
Q 007613 315 GHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~ 391 (596)
...|+.+-|..++....+-..+ |....+.+.+ .-..|+...|..+++.+.+.- |+.. .-..-+....+.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 4458888888877776665433 3333333333 334679999999999988653 5432 2223344556677777
Q ss_pred HHH---HHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 392 KTM---EVLSDMKSLGLCPNTITYSILLV-----ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 392 ~A~---~~~~~m~~~g~~p~~~t~~~ll~-----a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.+. +++........ +..+...+.- .+.-.++.+.|..++.++.+. +.++...|..+++.+
T Consensus 418 ~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 777 33333332111 2222222221 233467888999999998874 455666777777754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.19 Score=49.48 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+.+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456778899999999999999999999998875 4553 358889999999999999999999988742 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 007613 412 YSILLV--ACERKDDVEVGLMLLSQAKEDGV 440 (596)
Q Consensus 412 ~~~ll~--a~~~~g~~~~a~~~~~~~~~~g~ 440 (596)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 11223344566677777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.2 Score=35.50 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 44555555566666666666666655 345556666666666543 2233333331 1 12233444556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
.++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666665554321 11122222222 5566666655541 24445655555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.49 E-value=5.4 Score=39.26 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILL 416 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 416 (596)
..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++..++++|.-++ .|+..-|..+|+--.. ..||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4456666666666666777777777777766 5566777777777665 3556677777766333 23444443 3455
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 417 VACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~ 436 (596)
.-+...++-..|+.+|+..+
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 55666677777777777444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.76 Score=44.39 Aligned_cols=135 Identities=17% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 32 YNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
-|.+.+.|++..|...|++..+.= ..+. ++...+ ...-..+++.+...+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------------ee~~~~----~~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------------EEQKKA----EALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCH------------------HHHHHH----HHHHHHHhhHHHHHHHhhhh
Confidence 356678899999998888865421 1111 000000 01123456666677788888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH-HHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYG 186 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 186 (596)
+..|++.-...++.+ ++|+-..-.-..+|...|+++.|+..|+++.+.. +-|..+-+-|+.+-.+..... ...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887765 6677777777888888888888888888888763 334444555555544444443 3467777
Q ss_pred HHHh
Q 007613 187 IMRS 190 (596)
Q Consensus 187 ~m~~ 190 (596)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.1 Score=42.78 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=117.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHhc----cCCHHH
Q 007613 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDR-----VVFNALITACGQ----SGAVDR 215 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~li~~~~~----~g~~~~ 215 (596)
..-+|.-+... +|| ....++....-.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 133 35677787888899999999888776542 22111 234444444443 456789
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 216 AFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
|.+++..+... -|+...|... .+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.
T Consensus 252 a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 252 AEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 99999999864 4665555443 467788999999999999755321 1 11234556677778889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007613 292 YDDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (596)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (596)
|..+.+..-. +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 328 f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999986433 44445444443 3456777 889999988754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.5 Score=42.46 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.+++.+.-+|.+.+++..|++.-...+..+.. |.-.+-.-..++...|+++.|+..|+.+.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34666677777777777777777777766543 56666666667777777777777777777764 33444444454444
Q ss_pred HhcCCHH-HHHHHHHHHHh
Q 007613 350 SNAKNWQ-KALELYEHMKS 367 (596)
Q Consensus 350 ~~~g~~~-~A~~~~~~m~~ 367 (596)
-+..... ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4443333 33556666653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=8.3 Score=38.53 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
.+|.++-++..+.+.. |......+..+....++++.|...|++....+ +....+|......+.-+|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555433 55555555555555555666666666555543 222333333333444456666666665554
Q ss_pred Hh
Q 007613 366 KS 367 (596)
Q Consensus 366 ~~ 367 (596)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.1 Score=40.24 Aligned_cols=115 Identities=10% Similarity=-0.014 Sum_probs=65.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCC
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQ 249 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 249 (596)
..|+..+|-..++++.+. .+.|..++.-.=++|...|+.+.-...++++... ..+|. ++-..+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666666766654 3556666666666777777776666666666532 23332 222223333445666
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.++..
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 666666666665554 3444444555555556666666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.47 E-value=14 Score=41.33 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=23.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
+.+|..+|++.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 444455555555555544432211 0000111344444455555555555544443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.41 E-value=12 Score=39.47 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=169.1
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 007613 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (596)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (596)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456666666554 45667777888888988877665221111 4566666666666532 223333333322222
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC------
Q 007613 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (596)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 264 (596)
. .+.++|..+.+-....|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-++...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888764222111110 122234555666777888877777766554421
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHH--H----hCCCCCCHHHHHHHHHHHHhcCCHH---H
Q 007613 265 -----IKGTPEVYTIAIN--------CCSQTGDWEFACSVYDDM--T----KKGVIPDEVFLSALIDFAGHAGKVE---A 322 (596)
Q Consensus 265 -----~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m--~----~~~~~p~~~~~~~li~~~~~~g~~~---~ 322 (596)
.+.....|.-++. .+.+.++-.++...|..- . ..+..|+ ......++.+..... +
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1112222322222 111112222222222110 0 1122333 233344444443311 1
Q ss_pred H-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 323 A-------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 323 a-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
| .++.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 1 112222221 1223333445555666778899999998888776 688888888899999999998876
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
++-+.++ .+.-|.-+..+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6655443 25667778889999999999999886653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.34 E-value=11 Score=38.80 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHH----cCChh
Q 007613 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACAN----AGQVD 251 (596)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~----~g~~~ 251 (596)
..-+|.-+.+. +|| .+..++...+=.|+-+.+++++.+..+. .++... ...|...+..++. ....+
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34455555544 233 4556777888889999999999887653 344332 2345666655544 45688
Q ss_pred HHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYT-IAINCCSQTGDWEFACSVYDDMTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
.|.++++.+.++- |+...|. .-.+.+...|++++|++.|++...... +.....+--+...+.-.+++++|...|
T Consensus 251 ~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999998873 4444443 345667788999999999997653211 123445556666788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 007613 328 QEAKNQGISVGIISYSSLMG-ACSNAKNW-------QKALELYEHMKS 367 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 367 (596)
..+.+.+ ..+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999875 344555544433 34567777 899999998764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.7 Score=33.07 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
...++...+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555555656555565555432 234555555566666666666666666666666553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.6 Score=40.08 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (596)
|+.-+..| +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.....+.-...+.-|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444432 44556666666655554410 0011223345555555666666665555555432111111234444445
Q ss_pred HHHHcCChhHHHHHHHHHHhc
Q 007613 243 ACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (596)
+..+.|+.++|...|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555555555555555555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.7 Score=39.80 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAI 276 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li 276 (596)
.|+.-+. +.+.|++..|.+.|........+-.-....+-.|..++...|++++|..+|..+.+.-. +.-+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544443 33455566666666666553211111122333456666666666666666666554321 11234555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 007613 277 NCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566666666666666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=4 Score=32.74 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=56.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCC
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (596)
+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3556677777777777766542 4456677777777777777777777777666542222222 22233334566677
Q ss_pred HHHHHHHHHHHHhCC
Q 007613 178 VAKAFGAYGIMRSKN 192 (596)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (596)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.3 Score=41.19 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNALI 204 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li 204 (596)
+..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445556666666666666666666553 44566666666666666666666666666543 35666655555444
Q ss_pred HH
Q 007613 205 TA 206 (596)
Q Consensus 205 ~~ 206 (596)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.3 Score=33.46 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.+++++|...+++.++..-..-..-|-..+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445567888888888888776521 12345566777888888888888888888777531111234555555554433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=8.1 Score=35.25 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007613 346 MGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (596)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3444555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.28 E-value=13 Score=36.83 Aligned_cols=146 Identities=10% Similarity=0.130 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 007613 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-MNALI 381 (596)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li 381 (596)
...|...+..-.+..-++.|..+|.++.+.+ ..+++.++++++..++ .|+..-|..+|+--... -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567778888788888999999999999988 5678888999998776 67778899998854433 345443 34566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007613 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (596)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (596)
.-+..-++-+.|..+|+..... +..+ ...|..+|.--+.-|++..+..+-++|.+ +-|...+-......|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6777788889999999965543 3334 56789999988999999999888888877 4455544444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=5.1 Score=32.17 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007613 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNW 355 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~ 355 (596)
....|+.+.|++.|.+....-+. ....|+.-..++.-.|+.++|++-+++..+..-.-... .|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 33445555555555544443222 34445555555555555555555554444331111111 122222234455556
Q ss_pred HHHHHHHHHHHhCC
Q 007613 356 QKALELYEHMKSIK 369 (596)
Q Consensus 356 ~~A~~~~~~m~~~~ 369 (596)
+.|+.=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.07 E-value=2 Score=40.03 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTITYSI 414 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 414 (596)
.++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666666543 34556666667777777766666666666543 344454444433
Q ss_pred H
Q 007613 415 L 415 (596)
Q Consensus 415 l 415 (596)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.66 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 007613 242 KACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~ 262 (596)
..|.+.|++++|+++|+++.+
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.2 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhc
Q 007613 240 LMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++.+|.+.+++++|...+++..+.
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.98 E-value=11 Score=35.62 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
++..++.+|...+..+ +|.++++.+..+ .+-+ ..++..-++.+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 444555555432 1222 233334455555566677777777766654
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.98 E-value=13 Score=37.41 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
..|..+..+.|+.++|.+.|++|.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666667776666666543211 1223444566666666667666666666543
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.6 Score=29.57 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
++..+...|...|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.93 E-value=5 Score=38.22 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 007613 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (596)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (596)
+...+++.|.+.|+..+..+|-+..-.... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666655555444442222222 1 1234566666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=15 Score=36.79 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhCC---CCC---hHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
...+.|+.+|.+.. +-| ...|..+...+. ......+|.++.++..+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35677888887755 323 333332222211 1234567777888888776 6678888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHH
Q 007613 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRA 216 (596)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a 216 (596)
.++++.|..+|++....+ +....+|........-+|+.++|.+.+++..+. .|... .....+..|+.. .++.|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 888999999999888764 333555666666667789999999998886655 33322 233334455554 45667
Q ss_pred HHHHHH
Q 007613 217 FDVLAE 222 (596)
Q Consensus 217 ~~~~~~ 222 (596)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.73 E-value=12 Score=35.57 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (596)
++.+.+++.|.+.|+.-+..++-+....... . .....+..+++.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455666677777776555555443322222 1 124567788888877642 2344455555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 355 --WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLV 417 (596)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (596)
.+.++.+|+.+.+.|+.++ ...+.+-|-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3556677777777666554 2234344444433222 3467778888888888877777665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=6 Score=37.38 Aligned_cols=151 Identities=13% Similarity=0.022 Sum_probs=88.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH--HHHHHHhccCCHH
Q 007613 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--VFN--ALITACGQSGAVD 214 (596)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~--~li~~~~~~g~~~ 214 (596)
-.|+..+|-..++++.+. .+.|..+++--=++|.-.|+.+.-...+++....- .+|.. +|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777764 35567777777778888888888888887776541 23332 222 2233455678888
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 007613 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
+|.+.-++..+.. +.|.-.-.++...+--.|+..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888777766431 23455555666667777788887776655432210000 01111222334445666666666
Q ss_pred HHH
Q 007613 292 YDD 294 (596)
Q Consensus 292 ~~~ 294 (596)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=9.8 Score=34.15 Aligned_cols=199 Identities=16% Similarity=0.074 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 312 (596)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44555555666666666666666655542 223344555566666666666777777777666544332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 389 (596)
.+...|+++.|...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777654221 1223334444444666777888888877777643 22 35667777777777778
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888877663 343 33444444444466677888877777776
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.55 E-value=4.6 Score=30.62 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 007613 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (596)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (596)
..+.+||..+-+.+...+. ....+...-+....++|++++|..+.+..+.||...|.+|-.. +.|-.+.+..-+.+
T Consensus 18 ~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 4577889888888887762 2333333333445677999999999999999999999877553 55666666666667
Q ss_pred HHHcCCCCCHHHH
Q 007613 118 VQEAGLKADCKLY 130 (596)
Q Consensus 118 m~~~g~~~~~~~~ 130 (596)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 77666 4444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.17 E-value=10 Score=33.55 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=104.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
|-+.-|+-=|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 44444555555554443 3446889999999999999999999999998876543322333222 233458888888777
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 328 QEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
...-+.. +.|+ ..|--++ ...-++.+|..-+ ++.. ..|..-|...|-.|.-..-.+ ..+++++...
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-
Confidence 7666654 2222 2222222 2233455665433 3433 345566665555544222222 2234444432
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 405 ~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
-..+ ..||--+..-+...|++++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2212 246667777888999999999999888764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.93 E-value=5.1 Score=34.84 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555566666666666655554332222 2334445555555556555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.81 E-value=16 Score=35.10 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=71.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH--
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFL-- 307 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~-- 307 (596)
++..++...+.++++++.|+...+... .....++..|.+.|.+..++++|.-...+..+ .++.--...|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555666667777777776654311 11234677777777777777777655544322 2222111112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 308 ---SALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 308 ---~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
..+.-++...|++..|.+.-++..+ .|-++ -......+.+.|...|+.+.|+.-|++.-
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233355666777666666665443 33221 22344567778888888888877776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.56 E-value=21 Score=36.04 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
..+..++-+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34455556677888888888777765322 23345666777777788888887777776543
|
The molecular function of this protein is uncertain. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.9 Score=31.20 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (596)
+..+-++.+....+.|++....+.+.||.+..++..|.++|+-++ +.|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 556667777777899999999999999999999999999999887 43433 33788887653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.45 E-value=4 Score=41.69 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHH
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (596)
-|..++-.|+++.|-.++..+++. .+..+..++.++|-.++|+.+- ++||. -.....+.|+++.
T Consensus 592 eyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 592 EYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHHH
Confidence 344555566666666655544422 1223334445555555555431 12211 1223345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
|.++..+.. +..-|..|.++..+.+++..|.+-|..... |..|+-.+...|+-+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 666654432 345566777777777777777666655442 44556666666665554444444444
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007613 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (596)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (596)
.|. .|.-.-+|...|+++++.+++..
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 432 22333345556666666666544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.33 E-value=14 Score=33.75 Aligned_cols=174 Identities=8% Similarity=-0.002 Sum_probs=93.2
Q ss_pred HHHcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 007613 244 CANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---- 317 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 317 (596)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++....-+.....-|..-|.+.+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3466777777777777765431 1234455566677777788888887777766543332223344444444321
Q ss_pred ---CCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007613 318 ---GKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (596)
Q Consensus 318 ---g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (596)
.+.. .|..-|+.+++. |=.+.-...|......+... -...=..+.+-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChH
Confidence 1111 222222222222 22222223333322222210 0001123456688889999
Q ss_pred HHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 392 KTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.|..-+++|.+. .+-... .+-.+..+|...|..++|.+.-.-+..
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999998875 332333 355566788888888888776655544
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=90.15 E-value=28 Score=36.93 Aligned_cols=162 Identities=10% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (596)
|..-+..+..+++.. ....+.+..+-+..+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 444444444333222 44444444443344666677788888888888888888776654421 12334555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHH
Q 007613 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVG 428 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a---~~~~g~~~~a 428 (596)
+|+......+-+.+.+.....+......++....... +-.+.-++-.-..- ..+.|+..+|
T Consensus 451 a~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~----------------~~~~~L~fla~yreF~~~~~~~~~~~A 514 (566)
T PF07575_consen 451 AGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM----------------LLSQRLSFLAKYREFYELYDEGDFREA 514 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh----------------hhhhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 6666555555444443221222122222222211111 01111111111111 1234777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
.+.+-.+.+.++.|...-..-|.++
T Consensus 515 a~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 515 ASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------
T ss_pred HHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 7777677777777776655555543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.11 E-value=11 Score=32.18 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+..+.+...+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555666777777777777777777776655544432 23344333332221111 122233333333332
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
+ + ..+..++..+...|++-+|++..+..... +......++++..+.++...-..+++...+.
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 1 24556667777777777777777664322 1222345566666666655555555555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.1 Score=30.69 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (596)
+.-++.+-++.+....+.|++....+.+.||.+..++..|.++|+-++ +.|. +...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 344666677777777899999999999999999999999999999887 4343 555788887643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.54 E-value=32 Score=36.69 Aligned_cols=103 Identities=8% Similarity=0.056 Sum_probs=64.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChH
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (596)
++-|++.+.+++|+++-+.....- +- .......++.-+...|++++|-...-+|...+..-|.--+..++..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 444889999999999877665432 21 12222333333455678888888888888778888888777777776654
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (596)
.... -+.......+...|..++..+..
T Consensus 441 ~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 3322 22222112355667777766665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.17 E-value=13 Score=31.46 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
+.++.+.+..+++.+.-. .|... .-..-...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555555555555443 22211 1111122334555666666666665543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.9 Score=34.04 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (596)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34666777777777777777777777665444332 2345566666666777666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.71 E-value=32 Score=35.54 Aligned_cols=366 Identities=10% Similarity=0.032 Sum_probs=194.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHhhCCC------CChHhHHHHHHHHHhcCChH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN------PTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~ 109 (596)
+-|..+.+..+|++-+..= |........... .+...|+.+.-++.|+.... -....|...|..-..++++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6789999999999887753 444433333333 33344556666777765431 23456888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c------CChhHHHHHHHHHHHC---C-CCCCHhhHHHHHHHHHh-c
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~~-~ 175 (596)
....++++.++. | ..-|+....-|.+ . ...+++.++-...... + ..+....+..-++--.. .
T Consensus 169 ~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999998863 2 2233333333222 1 1222222222111110 0 00011111111110000 0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCC----CCHHHHHHHHHHHHHcCCh
Q 007613 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVD----PDHITIGALMKACANAGQV 250 (596)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~~ll~~~~~~g~~ 250 (596)
+..+++.....+. ....-..+-......+....|+.-.... ..++ ++..+|...+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 0111111111000 0011112222223333333444333210 0112 3466788888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (596)
+.+.-+|+...-.- ..-...|--.+.-....|+.+-|..++..-.+--++-.+.+--.-....-..|+.+.|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999988875432 12234566666666666888888888776655433322222211122234568999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHHHh
Q 007613 331 KNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 402 (596)
...- +--...-..-+....+.|..+.+. .++....... -+....+.+.-- +.-.++.+.|..++.++.+
T Consensus 393 ~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 393 ESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 8874 222233333455566788888887 4444443322 222222222222 2336788999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 007613 403 LGLCPNTITYSILLVACERKDD 424 (596)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~ 424 (596)
. ++++...|..++.-+...+.
T Consensus 470 ~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 470 I-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred c-CCccHHHHHHHHHHHHhCCc
Confidence 5 66677778888877766553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=22 Score=33.64 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=118.4
Q ss_pred CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCH
Q 007613 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (596)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~ 162 (596)
+.++|.......+.++...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3456666666666666666643 33333333433 34556666666777777653 3566666655333 4566
Q ss_pred hhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007613 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (596)
.+-...+.++...+.. ..+...+...... ++..+-...+.++++.++ +++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 2233333333322 244444455666666665 345555555543 2343444
Q ss_pred HHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 238 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
...+.++.+.+ ....+...+..+.. .++..+....+.++.+.|+. .|+..+-...+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444444432 12344444444442 33456666666666666663 4444444444432 2 12345556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6663 4666666555532 2444444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.51 E-value=16 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=10.5
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 007613 351 NAKNWQKALELYEHMKSIKL 370 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~ 370 (596)
..+++.+|.++|+++....+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555554433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.2 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.95 E-value=16 Score=31.22 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~ 399 (596)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444455555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=17 Score=31.02 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHH-
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALI- 169 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li- 169 (596)
..|..-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-...-.|-.. -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 356677888888888888776543222 22233445567788888888888876543233222 111111
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 170 -DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 170 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
-.+..+|.++......+.+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12345677777777666665554333333344555666677888888887777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.4 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007613 342 YSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
++.|...|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.11 E-value=26 Score=32.76 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 284 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (596)
...+|+++|+.... ..+.-|..+...++..... .+ ....-.++...+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2233466666666665554 21 223333344444432 33566777888888999999999988
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH-----HHhCCCCCCHHHHHHH
Q 007613 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSIL 415 (596)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~t~~~l 415 (596)
++++..... +...|...|...|....+.|+..-..++..+ +.+.|+..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888877654 5566788899999998888887666555544 2344555554444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.05 E-value=35 Score=34.07 Aligned_cols=397 Identities=11% Similarity=0.091 Sum_probs=225.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-------C-----------CChHhHHHHHHH
Q 007613 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-----------PTLSTFNMLMSV 101 (596)
Q Consensus 40 ~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~li~~ 101 (596)
+++.....+....+.. +....++...+-.+.+.+.+++|...|..-. + +|...=+..+..
T Consensus 60 nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s 137 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS 137 (549)
T ss_pred hHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH
Confidence 3444444444444443 3333333333334556788888888775321 1 122223456667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcC--------ChhHHHHHHHH-------HHHC------
Q 007613 102 CASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVFHE-------MVNA------ 156 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g--------~~~~a~~~~~~-------m~~~------ 156 (596)
+...|++.+++.+++++...=.+ -+..+|+.++-.+++.= ..+-.-+.|+. |...
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~ 217 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYE 217 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHH
Confidence 88899999999999988765433 68889998776666541 11222222222 2111
Q ss_pred CCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--
Q 007613 157 GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (596)
Q Consensus 157 g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 231 (596)
.+.|-......++....-. .+..--.+++......-+.|+-. ....|...+.. +.+++..+.+.+... .+.
T Consensus 218 k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--~i~~L 293 (549)
T PF07079_consen 218 KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--KIEKL 293 (549)
T ss_pred hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--hHHHH
Confidence 2344444444444443321 23333445555554444566533 33344444444 455555554443321 111
Q ss_pred --CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCC
Q 007613 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKGV 300 (596)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~ 300 (596)
.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+.+..+ ...+..+=+.++......++
T Consensus 294 ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di 373 (549)
T PF07079_consen 294 KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI 373 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc
Confidence 12457888999999999999999988877655321110 01123333333 12234445666777766654
Q ss_pred CCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCC
Q 007613 301 IPDEVFLSALID---FAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIK 369 (596)
Q Consensus 301 ~p~~~~~~~li~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~ 369 (596)
. .......++. -+-+.|. -++|..+++.+.+-. +-|...-|.+. ..|.. ...+..-.++-+-+.+.|
T Consensus 374 D-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 D-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred c-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 2 1222223333 2334455 788999999888763 34444444333 23332 234556666666677788
Q ss_pred CCCCHH----HHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007613 370 LKPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (596)
Q Consensus 370 ~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (596)
+.|-.+ .-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. +.|+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n 524 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPN 524 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCc
Confidence 776433 34555544 4578999998877666666 889999999998888899999999999865 4567
Q ss_pred HHHHHHHH
Q 007613 444 LVMFKCII 451 (596)
Q Consensus 444 ~~~~~~li 451 (596)
..++++=+
T Consensus 525 ~~~~dskv 532 (549)
T PF07079_consen 525 ERMRDSKV 532 (549)
T ss_pred hhhHHHHH
Confidence 66666544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.00 E-value=22 Score=31.74 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 007613 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN- 277 (596)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 277 (596)
.+......+...+.+..+...+...... .........+......+...++...+...+.........+ .........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3334444444444444444444443320 0011222333333344444444555555555544432211 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (596)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (596)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 55666666666666666543211 0122233333333555667777777777766654221355666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 356 QKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77877777776542 32 33444444444466667777777777665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.74 E-value=13 Score=32.45 Aligned_cols=127 Identities=10% Similarity=0.072 Sum_probs=75.4
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCChHhHHH-----
Q 007613 28 QLHSYNRLI---RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM----- 97 (596)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~----- 97 (596)
....|..++ ..+.. +.....+.+...+. ..........+.......+++++|..-++... .+.-..+..
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 334444444 34444 66666666666552 12233333444556667788888888887644 333333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
|.+.....|.+++|+.+++.....+. .......-.+++...|+-++|+.-|......+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33456777888888888876654432 22233445577788888888888888877764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.3 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.22 E-value=2 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+|..+..++...|++++|...|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.15 E-value=20 Score=30.34 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=42.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
..-.+.++.+++..+++.+.-. .|.... -..-...+.+.|++.+|.++|+++... .|.......|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 3445667888888888887765 343322 222233457788888888888888765 3343334445444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.98 E-value=12 Score=35.16 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445666655555666666666666666666666666666666555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.8 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555566666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.12 E-value=35 Score=32.32 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=88.5
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCC-----
Q 007613 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPN----- 161 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~----- 161 (596)
.+.|+.+.|...+.+..... ..|+. ..|+.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777665432 22322 23444444443333777777766654332 12233
Q ss_pred HhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007613 162 VHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (596)
..+...++.+|...+..+ +|.++.+.+... .|+ ...+..-+..+.+.++.+++.+.+.+|.... .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 245677788888877654 556666666544 233 4455556677777899999999999998752 2122334
Q ss_pred HHHHHHH---HHcCChhHHHHHHHHHHhcCCCCC
Q 007613 238 GALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (596)
Q Consensus 238 ~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 268 (596)
...+..+ .... ...+...++.+....+.+.
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 4444443 3322 3344455544444333433
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.04 E-value=21 Score=29.68 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=31.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
..++++++..+++.|.-. .|+ ..++... .+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 367777777777777653 333 2333333 345777888888888887765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.39 E-value=12 Score=35.24 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (596)
+....+...++..-....+++.+...+-.++..... ..|+. +-.+.+..+. .-++++++.++..=...|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 333444444444444445566666655555432100 01111 1111222222 22455666666665666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.35 E-value=66 Score=34.85 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=74.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChH
Q 007613 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (596)
+.|.+.|++++|.+-+-+-+. .+.+...+.- +.......+-..+++.+. -.+..--..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~k-----fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVIKK-----FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHHHH-----hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 456699999999998866553 2233322221 223333444444444332 123334467888888888887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
.-.+..+... .|.. ..-....+..+.+.+-.++|.-+-.... .+......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7666655433 2211 1113345555556666666655544332 1333333333 35567777777766653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.97 E-value=90 Score=35.37 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
-.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.+++|.-.|...-+. .--+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 3333344445555554443 34554444443 4444566677776666543221 2345677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
-.+|++++|..+..++.. ..+... -..|+.-+...+++-+|-++..+.... |. . .+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-~----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-E----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-H----HHHHHhhHhHHHH
Confidence 788888888888877753 223222 256788888899999998888876542 21 1 2333445555666
Q ss_pred HHHHHHH
Q 007613 428 GLMLLSQ 434 (596)
Q Consensus 428 a~~~~~~ 434 (596)
|.++...
T Consensus 1045 Alrva~~ 1051 (1265)
T KOG1920|consen 1045 ALRVASK 1051 (1265)
T ss_pred HHHHHHh
Confidence 6655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.2 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHH
Q 007613 161 NVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A 181 (596)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.43 E-value=15 Score=32.24 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHHcCChhHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRA 253 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a 253 (596)
.|++.|-++...+.--++.....|..-|. ..+.+++.+++....+...+- .+|...+.+|.+.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555554443323333333333332 344555555554444322222 34444455555555555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.74 E-value=3.9 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.04 E-value=3.5 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
|..+...+.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.34 E-value=49 Score=34.33 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=53.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.... -|..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----------chhhhhhhhhhcCChhH
Confidence 35566666666554433 34556666666666666666666665543 13445555555565554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (596)
...+-....+.|. .|.-..+|...|+++++.+++.+
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444441 22223345556666666665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=92 Score=33.64 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (596)
..++...++...... .+......-+..-...++++.+...+..|....- -...-.-.+..++...|+.++|..+|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555554433222 1223333334444467777777777777654322 1334445556666667777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007613 330 AKNQGISVGIISYSSLMGACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (596)
+... .+ -|..|. -.+.|..-. .-..-..+ ..+ .--.-+..+...|...+|...+..+...
T Consensus 372 ~a~~---~~--fYG~LA--a~~Lg~~~~~~~~~~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~- 436 (644)
T PRK11619 372 LMQQ---RG--FYPMVA--AQRLGEEYPLKIDKAPKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS- 436 (644)
T ss_pred HhcC---CC--cHHHHH--HHHcCCCCCCCCCCCCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 6331 11 121111 111121100 00000000 000 0011234556667777777777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 405 LCPNTITYSILLVACERKDDVEVGLMLLS 433 (596)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (596)
.+......+.......|..+.+.....
T Consensus 437 --~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 437 --RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 234444445555556666666665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.13 E-value=16 Score=27.72 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (596)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555666677777777777777777777777776655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 2e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 7e-16
Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 4/240 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
V ++ + + H+ + LA V ++ T+P+ EV
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 5e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 5e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 2e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 3/201 (1%)
Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
A + + S + L+ + +L + A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 382 TALCDGDQLPKTMEVL---SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
DQLP +L + Y+ +++ R+ + + +L K+
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
G+ P+L+ + + R+ + A T+ + + +++ +T++ L A V
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 499 IPTVEVVSKVLGCLQLPYNAD 519
+ V+ + L P N
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 7e-13
Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 197/664 (29%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
+ ++ +DP+ + ++ Q R + K Y + +N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS-KPY-----ENCLLVLLNVQ 254
Query: 280 SQTGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAG 315
+ W +C V D D + PDEV S L+ +
Sbjct: 255 NAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLD 312
Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPT 373
++ +E + + S++ + W ++H+ KL
Sbjct: 313 C-----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTI 358
Query: 374 V-STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC- 406
+ S++N L I L M V++ + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 407 --PNTITYSI----LLVACERKDDVEVGLMLLSQ-------AKEDGVIPNLVM-FKCIIG 452
P T SI L + + +++ + ++ +D + P L F IG
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 453 ---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
E+ L F +E K + + T++ +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF----LEQK---IRHDSTAWNASGSILNTLQQLKF-- 529
Query: 510 GCLQLPY------NADIRERLVENLG----VSADALKRSNLCSLIDGFGEYDPRAFSLLE 559
Y N ERLV + + L S L+ + E
Sbjct: 530 ------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEA-IFE 581
Query: 560 EAAS 563
EA
Sbjct: 582 EAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-10
Identities = 82/541 (15%), Positives = 149/541 (27%), Gaps = 182/541 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVEVGLMLLS-----QAK---------EDGVIPNLVM 446
YS + L E + + + M+ + K G I N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 447 ----FKCIIGMCSRRYEKARTLNEHVLSF--NSGRPQIENKWTSL---ALM-----VYRE 492
+K I +YE R +N +L F I +K+T L ALM ++ E
Sbjct: 526 QLKFYKPYICDNDPKYE--RLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 493 A 493
A
Sbjct: 583 A 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.12 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.12 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.11 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.05 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.02 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.86 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.76 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.75 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.64 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.54 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.48 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.32 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.3 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.29 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.26 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.16 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.7 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.37 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.79 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.63 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.16 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.86 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.7 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.66 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.0 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.76 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.55 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.18 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.14 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 83.7 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.33 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=317.37 Aligned_cols=416 Identities=8% Similarity=-0.037 Sum_probs=357.7
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC--CCCChHhHHHHHH
Q 007613 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (596)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (596)
+++..|+.++ +.|++++|+.+|++|.... |.. .....++..+...|++++|+.+|+++ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3555666655 7999999999999999765 443 44566888888999999999999988 4789999999999
Q ss_pred HHHhcCChHHHHHHHHHHHH-c--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 007613 101 VCASSKDSEGAFQVLRLVQE-A--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~-~--------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (596)
+|.+.|++++|+++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 99999999999999985321 1 223458899999999999999999999999999864 2234443
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 166 GAL--------------------------------------IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (596)
Q Consensus 166 ~~l--------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (596)
..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 333 55667889999999999999876 57999999999999
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
.+.|++++|.++|+++.... +.+..++..++.+|.+.|++++|..+++.+.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3356788999999999999999999999998765 6778999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
|.++|+++.+.... +..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886443 68899999999999999999999999999875 56788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007613 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (596)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (596)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999775 66888 7899999999999999999999999999854 2
Q ss_pred CCHHHHHHHHHHHHh
Q 007613 442 PNLVMFKCIIGMCSR 456 (596)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (596)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 367788888887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=304.86 Aligned_cols=404 Identities=10% Similarity=0.010 Sum_probs=350.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-------------------C
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------T 91 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~ 91 (596)
....+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchh
Confidence 334455899999999999998654 455667778888899999999999999965433 4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------------------------------------- 133 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------------------------------------- 133 (596)
..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 8899999999999999999999999999875 3344443333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007613 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (596)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (596)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.++.+.|++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 55666889999999999998865 5899999999999999999999999999999765 44788899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
++|.++++++... .+.+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+
T Consensus 356 ~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 356 NKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999853 24568899999999999999999999999998865 5678899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 007613 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K 369 (596)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 369 (596)
++.+.+.. +..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 99987643 78899999999999999999999999999875 557899999999999999999999999999875 5
Q ss_pred CCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HH
Q 007613 370 LKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VM 446 (596)
Q Consensus 370 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~ 446 (596)
..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+. ..
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 586 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMA 586 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHH
Confidence 6777 7899999999999999999999999998753 447899999999999999999999999999984 4554 34
Q ss_pred HHHH
Q 007613 447 FKCI 450 (596)
Q Consensus 447 ~~~l 450 (596)
+..+
T Consensus 587 ~~~l 590 (597)
T 2xpi_A 587 SDLL 590 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=267.52 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=135.2
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 007613 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 322 (596)
+..+.+.+.+.+....+. .++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445555555444332 4666667777777777777777777777777777777777776665443 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007613 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (596)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (596)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.+++.+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-27 Score=236.36 Aligned_cols=378 Identities=12% Similarity=0.048 Sum_probs=279.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~ 108 (596)
...+.+.|++++|++.+.++.+.. |.+......+..++...|++++|...++.. .+.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345668899999999999888876 666666677777777778888888877654 245677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887754 4456678888888888888888888888887763 334556777777788888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 007613 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (596)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (596)
.... +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...|++..+.. +.+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 7653 3346778888888888888888888888877531 2335667777777888888888888888777765 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
..++..+...|.+.|++++|++.|+++.+.... +..++..+...+.+.|++++|...++++.+.. +.+..+++.+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 777788888888888888888888887776543 56677777777788888888888887777764 5567777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 423 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 423 (596)
+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ ..|+ ...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 888888888888887777643 34566777777777778888888888777776 3443 445555555544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=262.28 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCCCCHHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG---------DWEFACSVYDDMTKKGVIPDEVF 306 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~p~~~~ 306 (596)
.++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+ .+++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 455556666666666666666666666666666666666666665443 36778888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (596)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (596)
.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-26 Score=230.27 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=316.5
Q ss_pred HHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007613 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (596)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (596)
..+.+.|++++|.+.|..+. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..+|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34556788999999998753 4456677788888999999999999999988765 6688999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998864 4456789999999999999999999999998763 33456677888899999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007613 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (596)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (596)
. .+.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 164 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 4 13357789999999999999999999999999886 667889999999999999999999999999886543 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
++..+...+...|++++|...++++.+.+ +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4567889999999999999999999999998764 567899999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...++++.+ +.|+.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 999999999999999874 244578899999999999999999999999997 45653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-22 Score=202.50 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=250.9
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (596)
.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356677888888888888888888888887764 5567788888888888888888888888888764 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHHhccCCHHHHHHHHHHHhhCCCCCCCC
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-R---VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 233 (596)
..|.+.|++++|...|+++... .|+ . ..+..+ ...+...|++++|...|+++... .+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 8888888888888888888865 333 3 455544 33477888888888888888763 2345
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--- 310 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--- 310 (596)
..++..+..+|.+.|++++|...|+.+.+.+ +.+..+|..+...|...|++++|+..|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 6778888888888888888888888887765 566788888888888888888888888888765432 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (596)
Q Consensus 311 ---------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (596)
...+.+.|++++|...|+.+.+.. +.+ ..++..+..++.+.|++++|...++++.+.. +.+...|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 678888899999999998888754 222 3467888888888999999999988887643 3467888
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH------------HHHHhcC-----CHHHHHHHHHH
Q 007613 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (596)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (596)
..+..+|...|++++|...|+++.+ +.|+ ...+..+. ..|...| +.+++++.+.+
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888888899999999999988887 4555 44454444 2244444 66777888876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=199.80 Aligned_cols=318 Identities=13% Similarity=0.052 Sum_probs=249.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...+....... +.+...+..+...+.+.|++++|.++|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444332 5567788888999999999999999999988763 557888999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHH------------HHHHHHcCChhHHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRARE 255 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~g~~~~a~~ 255 (596)
+ +.+..++..+..+|.+.|++++|.+.|+++... .|+. ..+..+ ...+.+.|++++|..
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 445778888899999999999999999998753 4543 444444 344888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
.|+.+.+.. +.+..++..+...|.+.|++++|++.|+++.+.... +..++..+...|...|++++|...++.+.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999988875 567888999999999999999999999998876433 67888899999999999999999999988764
Q ss_pred CCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 336 SVGIISYSSL------------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 336 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
+.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344555444 78888999999999999998874 344 4478888889999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
++.+. .+.+..+|..+..+|...|++++|...++++.+ +.|+.
T Consensus 320 ~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 320 EVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 98764 233678888999999999999999999999987 44553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-22 Score=205.34 Aligned_cols=405 Identities=10% Similarity=0.014 Sum_probs=315.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHh
Q 007613 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (596)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (596)
....-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+..+|..+..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3445566779999999999999999987 4 46667778888888999999999998753 5567889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------------------------
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------- 156 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------- 156 (596)
.|++++|...|+.+.+.+ +++......++..+.+......+.+.+..+...
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 445445555555444433222222222111100
Q ss_pred -------CC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHH
Q 007613 157 -------GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALI 204 (596)
Q Consensus 157 -------g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li 204 (596)
.. +.+...+..+...+.. .|++++|+..|+++.. ..- +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 00 1114444444444444 8999999999999987 311 12345777888
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
..+...|++++|...++++... .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998864 3447788889999999999999999999998876 5567889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+++|...|++..+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999887654 56788889999999999999999999998874 45677889999999999999999999998
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 365 MKSIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 365 m~~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
+.+... .++ ..+|..+...+.. .|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875321 111 3488899999999 999999999999988752 3457788899999999999999999999999
Q ss_pred HcCCCCCHHH
Q 007613 437 EDGVIPNLVM 446 (596)
Q Consensus 437 ~~g~~p~~~~ 446 (596)
+ +.|+...
T Consensus 477 ~--~~~~~~~ 484 (514)
T 2gw1_A 477 D--LARTMEE 484 (514)
T ss_dssp H--HCSSHHH
T ss_pred H--hccccHH
Confidence 8 4466543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-21 Score=201.01 Aligned_cols=375 Identities=6% Similarity=-0.041 Sum_probs=290.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHH
Q 007613 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (596)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 101 (596)
..........+.+.|++++|++.|+++.+.+ |.+...+..++.++...|++++|...|+++. +++......++..
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3344444455668999999999999999987 7777788888899999999999999998753 3344444444444
Q ss_pred HHhcCChHHHHHHHHHHHHcC-------------------C-------------------------CCCHHHHHHHHHHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAG-------------------L-------------------------KADCKLYTTLITTC 137 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g-------------------~-------------------------~~~~~~~~~li~~~ 137 (596)
+........+.+.+..+...+ . +.+...+......+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 443322222222221111000 0 11134444444444
Q ss_pred Hh---cCChhHHHHHHHHHHH-----CCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 138 AK---SGKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (596)
Q Consensus 138 ~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (596)
.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.... |+...+.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 44 8999999999999987 311 2345678889999999999999999999998874 4478888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (596)
.+...+...|++++|...++++... .+.+...+..+...+...|++++|...|+.+.+.. +.+..++..+...|..
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999864 23456788889999999999999999999998876 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cC
Q 007613 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AK 353 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 353 (596)
.|++++|...|+++.+.... +...+..+...+...|++++|...++.+.+.... ++ ..++..+...|.+ .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876443 5678889999999999999999999998775311 11 3488899999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|++..+ ..|+...
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 9999999999998754 45678899999999999999999999999988 4566544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=197.46 Aligned_cols=392 Identities=12% Similarity=0.043 Sum_probs=295.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCC
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 107 (596)
.-+.+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+..++..+...+...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 3445568999999999999999987 7778888888889999999999999998763 5577889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHh------------------
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVH------------------ 163 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~------------------ 163 (596)
+++|...|+.+ .. .|+. ....+..+...+....|...++.+... ...|+..
T Consensus 109 ~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999633 22 2322 122234455555667788888877542 0112211
Q ss_pred ------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHhccCCHHH
Q 007613 164 ------------TYGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD--------RVVFNALITACGQSGAVDR 215 (596)
Q Consensus 164 ------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~ 215 (596)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 12222222211 247889999999988763 33 2246666677888899999
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (596)
|.+.+.+.... .|+...+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++.
T Consensus 262 A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 262 AQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999998864 5667788888888999999999999999998876 567888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----C
Q 007613 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----L 370 (596)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~ 370 (596)
.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. .
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 876543 56778888899999999999999999988875 5567788889999999999999999999887532 1
Q ss_pred CCCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 371 KPTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
......+..+...+.+. |++++|...|++..+.. +.+..++..+...+...|++++|.+.|+++.+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11223344455667777 99999999999988742 3457788889999999999999999999998843
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-18 Score=169.04 Aligned_cols=326 Identities=10% Similarity=0.031 Sum_probs=195.1
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
|+..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777888888888888888887764 4567788888888888888888888888887763 446677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (596)
.|...|++++|...|++..+. .| +...+..+..... ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 888888888888888888765 34 2333333311000 0011122334444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (596)
.|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +..++..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544443 334444555555555555555555555555444322 344455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 007613 327 LQEAKNQGISVGIISY------------SSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (596)
++...+.. +.+...+ ..+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 55554432 1122222 123555677777777777777776543 1122 2244566677777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 007613 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIG 452 (596)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li~ 452 (596)
++|+..+++..+. .+.+..++..+...+...|++++|...++++.+ +.|+. ..+..+..
T Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 289 VEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 7777777777663 123566777777777777777778777777776 34543 33333333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-18 Score=166.62 Aligned_cols=319 Identities=12% Similarity=0.040 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (596)
+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566777778888888888888888877754 4467778888888888888888888888877653 3356677777888
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDP---D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (596)
+...|++++|...|+++... .| + ...+..+...+. ...+..+...+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 88888888888888887643 44 2 222222211100 12344557788999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
|++++|.+.++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999887543 77889999999999999999999999999875 667889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHH------------HHHHHHcCCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCH
Q 007613 363 EHMKSIKLKPTVSTMNA------------LITALCDGDQLPKTMEVLSDMKSLGLCPNT-----ITYSILLVACERKDDV 425 (596)
Q Consensus 363 ~~m~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~ 425 (596)
++..+.. +.+...+.. +...+.+.|++++|...++++.+. .|+. ..+..+...+...|++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 9998754 334444432 366789999999999999998874 3443 2345577889999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhhHH
Q 007613 426 EVGLMLLSQAKEDGVIP-NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS 484 (596)
Q Consensus 426 ~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 484 (596)
++|...++++.+. .| +...+..+..++.+ .+++|....+..... .|.+...|..
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 345 (359)
T 3ieg_A 289 VEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH---NENDQQIREG 345 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChHHHHH
Confidence 9999999999985 34 55666666666554 566665554433322 3444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-19 Score=183.72 Aligned_cols=375 Identities=10% Similarity=0.009 Sum_probs=285.6
Q ss_pred cccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHH
Q 007613 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (596)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (596)
.|.+..........+.+.|++++|++.|+++.+.+ |.+...+..++.++...|++++|+..|+.+. .+....+..+.
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 131 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIE 131 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHH
Confidence 35556666666677779999999999999999987 7777888888889999999999999997542 22222233344
Q ss_pred HHHhcCChHHHHHHHHHHHHc------CCCCCHHH------------------------------HHHHHHHHH------
Q 007613 101 VCASSKDSEGAFQVLRLVQEA------GLKADCKL------------------------------YTTLITTCA------ 138 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~------------------------------~~~li~~~~------ 138 (596)
.+...+....|...++.+... ...|+... ...+...+.
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 555556667888888877542 11222221 122222221
Q ss_pred --hcCChhHHHHHHHHHHHCCCCCC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 139 --KSGKVDAMFEVFHEMVNAGIEPN-------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 139 --~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
..|++++|.++|+++.+.. +.+ ..++..+...+...|++++|...|++.... .|+...+..+...+..
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH
Confidence 1247889999999998763 222 335777778889999999999999999986 5668889999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
.|++++|.+.+.++... .+.+..++..+...+...|++++|...|+++.+.+ +.+..++..+...|...|++++|.
T Consensus 289 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDL---NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp SSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998864 23457788999999999999999999999999876 556788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CC
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNA----------KN 354 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~----------g~ 354 (596)
..|+++.+.... +...+..+...+...|++++|...++.+.+.. .......+..+...|.+. |+
T Consensus 365 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 999999887543 56788899999999999999999999987643 112223345556777777 99
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007613 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
+++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .|+.
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 495 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 999999999998764 456789999999999999999999999998874 4443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-18 Score=163.71 Aligned_cols=265 Identities=11% Similarity=0.010 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
+..+...+...|++++|.++|+++.+.. +.+..++..++..+.+.|++++|...++++.+.. +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2223333334444444444444444444444331 1223344444444444
Q ss_pred cC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 210 SG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (596)
Q Consensus 210 ~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (596)
.| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 103 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 44 4444444444443220 1123334444444444444444444444444433 22233344444444455555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKALE 360 (596)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (596)
...+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++|..
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555544443322 34444444444555555555555554444321 02223455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 555554432 22344555555555555555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-17 Score=162.01 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=245.3
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
+.+...+..+...+...|++++|+.+++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456677888888889999999999999998775 5566677778888999999999999999998864 4567889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 169 IDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 169 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
...+...| ++++|...|++..... +.+...|..+...+...|++++|.+.++++.... +.+...+..+...|...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 99999999 9999999999998764 4457788899999999999999999999988642 23456677788999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGK 319 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 319 (596)
|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998876 6678899999999999999999999999887632 12245788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (596)
+++|...++.+.+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999999998875 4567889999999999999999999999988764 34677888888877 455544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-15 Score=154.39 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=299.6
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCChHhHHHHHHHHHh----cCChHHHHHH
Q 007613 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (596)
Q Consensus 44 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~ 114 (596)
++..+....+.| +......+...+.. .+++++|+..|++.. ..+...+..+...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555554 22333344444444 577899999998754 3577788888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHH
Q 007613 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (596)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (596)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66778888888888 789999999999998865 67788888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHH
Q 007613 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (596)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 258 (596)
+..+.| +...+..+...|.. .++.++|.+.|.+.... .+...+..+...|.. .+++++|..+|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67888888888887 89999999999998764 356677788888886 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 007613 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (596)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (596)
+..+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998765 45778888888887 899999999999998775 556777788888877 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 007613 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (596)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 402 (596)
..+.+ +...+..+...|.+.| +.++|.+.|++..+. .+...+..|...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99886 4567788888888766 789999999999985 467888999999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 007613 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (596)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g~~ 441 (596)
.| +...+..+...+.+ .++.++|...|++..+.+..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 57778888888887 89999999999999987643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-16 Score=160.12 Aligned_cols=407 Identities=11% Similarity=0.073 Sum_probs=259.4
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHH
Q 007613 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (596)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li 99 (596)
|.+...-..... +.+.|++++|..+|+++.+.. |.+..++...+..+.+.|++++|..+|++.. .|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 444444333333 346899999999999999876 7777777777888888888999999998764 36777777777
Q ss_pred HHH-HhcCChHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHh
Q 007613 100 SVC-ASSKDSEGAFQ----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 100 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~ 163 (596)
... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34577766655 66665542 433 356777777776654 678889999999888731111123
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHhcc---
Q 007613 164 TYGALIDGC-------------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS--- 210 (596)
Q Consensus 164 ~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~--- 210 (596)
.|....... .+.+++..|..++.+. .+.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 1234566666666552 2211 2333 23454444332221
Q ss_pred -CCH----HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHhcCCCCCHHH
Q 007613 211 -GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEV 271 (596)
Q Consensus 211 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~ 271 (596)
++. ..+..+|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 3566677777653 12345566666666654 57776 77888887775323456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-C 349 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 349 (596)
|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|..+|++..+.. +.+...+...... +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 888888888888888888888887775322 2 2467777777777788888888888877653 2223333322222 3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVE 426 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~ 426 (596)
...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35788888888888776543 3356778888888888888888888888877642 2232 346767777777778888
Q ss_pred HHHHHHHHHHH
Q 007613 427 VGLMLLSQAKE 437 (596)
Q Consensus 427 ~a~~~~~~~~~ 437 (596)
.+..++.++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-15 Score=152.85 Aligned_cols=338 Identities=13% Similarity=0.042 Sum_probs=286.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHhhCC-CCChHhHHHHHHHHHh----cCCh
Q 007613 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (596)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~ 108 (596)
.+++++|+..|++..+.|. ......+...+.. .++.++|+..|++.. ..+...+..+...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7999999999999998762 3344456666666 678999999998764 4567788888888888 7899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (596)
++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 57788888888887 789999999999998864 78889999999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhH
Q 007613 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (596)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (596)
|...|++..+.| +...+..+...|.. .+++++|.++|++.... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999999876 56778888888876 78999999999998753 345677777788887 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (596)
|...|++..+.+ ++..+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 467888888888887 89999999999999875 5567777888887766 789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHH
Q 007613 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 396 (596)
+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67788899999998 899999999999999854 67788889999988 8999999999
Q ss_pred HHHHHhCCC
Q 007613 397 LSDMKSLGL 405 (596)
Q Consensus 397 ~~~m~~~g~ 405 (596)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=165.52 Aligned_cols=297 Identities=11% Similarity=-0.011 Sum_probs=170.5
Q ss_pred hHHHHHHHH-HHhhCC---C--C--ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007613 74 QKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (596)
Q Consensus 74 ~~~~~~A~~-~~~~~~---~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (596)
.|++++|+. .|++.. + | +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356677776 666432 1 1 23456666677777777777777777777654 4456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
|.+.|+++.+.. +.+..++..+...|...|++++|+..|+++.... +.+...+..+... ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~---------- 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG---------- 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh----------
Confidence 777777766654 4456667777777777777777777777766553 1112111111000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (596)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (596)
...+. ..+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|+..|+++.+.... +
T Consensus 178 ---~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 178 ---GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ---hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 00000 01111222 226677777777777776654 22 4666777777777777777777777776665322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 007613 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (596)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (596)
..++..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5666666667777777777777777666653 345566666777777777777777777666542110 01
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4566666666666666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-17 Score=162.06 Aligned_cols=303 Identities=12% Similarity=-0.045 Sum_probs=196.8
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHH
Q 007613 37 RQGRISECID-LLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 37 ~~g~~~~A~~-~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (596)
..|++++|++ .|++..+.....+ .......++..+...|++++|+..|+++. +.+..+|..+...+...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3578888888 8876655431111 12234456677788899999999998753 5577889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (596)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.... +.+...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------hh-
Confidence 999999999875 5678899999999999999999999999999864 2233333222110 00 00
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHH
Q 007613 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (596)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (596)
.+ ...+..+...+ ..|++++|...|+++.... +-.++..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 180 ---~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 180 ---GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 00 01111122222 5666777777776666531 111135666667777777777777777777766654 44566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------CCHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----------VGII 340 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~ 340 (596)
+|..+...+...|++++|+..|+++.+.... +...+..+...|.+.|++++|...++.+.+.... ....
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 7777777777777777777777777665332 5666777777777777777777777776654211 1257
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEH 364 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~ 364 (596)
+|..+..+|.+.|+.++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 788888888888888888877653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-14 Score=151.64 Aligned_cols=397 Identities=10% Similarity=0.068 Sum_probs=281.4
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007613 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (596)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 124 (596)
|++.++.+ |.+...+..++.. .+.|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 6666666666664 55688999999999864 456778999999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHH-CCCC-CCHhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007613 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIE-PNVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (596)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (596)
|+...|...+... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 45677777665 7777654 3544 356788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHH------hhCCC-CCCCC--------HHHHHHH
Q 007613 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEVH-PVDPD--------HITIGAL 240 (596)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~------~~~~~-~~~~~--------~~~~~~l 240 (596)
......+....|....... ...+++..|..++... ..... .++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123443322211 1345667777776652 21100 12443 2345555
Q ss_pred HHHHHHc----CCh----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 007613 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (596)
Q Consensus 241 l~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~ 298 (596)
+...... ++. .++..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433222 222 36778899888874 6678999999998886 69987 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (596)
-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 122267889999999999999999999999999864 2233 589999999999999999999999998753 2233333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHH
Q 007613 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (596)
Q Consensus 378 ~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g-~~p~--~~~~~~li~~ 453 (596)
...... +...|+.++|..+|++..+. .+-+...|..++..+.+.|+.++|+.+|++.+..+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 322222 34689999999999998774 23357889999999999999999999999999863 2332 3456555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-17 Score=159.44 Aligned_cols=267 Identities=11% Similarity=-0.061 Sum_probs=181.3
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (596)
.+...|..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|.+.|++..+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999998875 5678899999999999999999999999998764 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (596)
..|...|++++|+..|+++.+.. |+ ...+..+...+...|++++|.+.++++.... +-.++..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999988652 22 1122334566777777777777777776531 1112456666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|++..+.... +..++..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 67777777777777777777776654 445666777777777777777777777766665322 4556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (596)
++++|...|+++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666543210 023445555555555555555554433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=164.96 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (596)
..+..+...+.+.|++++|+..|+++.... +.+..+|..+...+...|++++|...|+++... .+.+..++..+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMALAV 141 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 335555555555566666666665555442 234555555555555566666666665555542 1223445555555
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 007613 243 ACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALID 312 (596)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~ 312 (596)
.|...|++++|...|+++.+.... .....+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 556666666666666555543200 01233444567777777788888888777765432 14667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (596)
.+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 7777788888888877777664 4456777777778888888888888887777643 3346777777778888888888
Q ss_pred HHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 393 TMEVLSDMKSLGLCP-------------NTITYSILLVACERKDDVEVGLMLLSQ 434 (596)
Q Consensus 393 A~~~~~~m~~~g~~p-------------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (596)
|...|+++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888776542 11 245677777777777877777666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=179.22 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (596)
..|||+||++|++.|++++|.++|.+|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44666666666666666666666655542 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007613 416 LVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (596)
Q Consensus 416 l~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (596)
|.++++.|+ .++|.++|++|.+.|+.||..+|+++++.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-16 Score=151.09 Aligned_cols=279 Identities=10% Similarity=-0.019 Sum_probs=169.0
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
+...+..+...+...|++++|..+|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456777778888899999999999888764 5577788888888999999999999999888764 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH--HHHHcC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANAG 248 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g 248 (596)
.|...|++++|.+.|+++.... +.+...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 8889999999999998888663 1122222222000 000000111101 134445
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555443 334555555555555566666666665555544322 44555555566666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhHHHHHH
Q 007613 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEVL 397 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~ 397 (596)
++.+.. +.+..++..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 655543 3345556666666666666666666666655432110 3456666666666666666666666
Q ss_pred HH
Q 007613 398 SD 399 (596)
Q Consensus 398 ~~ 399 (596)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 54
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=178.87 Aligned_cols=150 Identities=13% Similarity=0.206 Sum_probs=126.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (596)
..+||++|++||+.|++++|.++|+.|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHH
Q 007613 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (596)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~ll 241 (596)
|+++++.|+ .++|.++|++|.+.|+.||.++|+.++.+..+. .+++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 578999999999999999999999998766554 3333333332 234443 45555666
Q ss_pred HHHHHcC
Q 007613 242 KACANAG 248 (596)
Q Consensus 242 ~~~~~~g 248 (596)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-16 Score=147.14 Aligned_cols=254 Identities=12% Similarity=0.153 Sum_probs=146.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChH
Q 007613 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (596)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (596)
........|++.+|+..++...... |.+. .....+.+.+...|+++.|+..++...+|+..++..+...+...++.+
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 3455566777777777776654433 3332 233445556666666677766665554555556666666666666666
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 110 GAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 110 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
+|++.++.+...+..| +...+..+..++...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777666666554323 444555555666666666666666655 345566666666666666666666666666
Q ss_pred HhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 007613 189 RSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (596)
Q Consensus 189 ~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (596)
.+.. |+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|+++.+.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6542 332211 11222333345666666666666543 23345555666666666666666666666665554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 007613 266 KGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKK 298 (596)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 298 (596)
+.++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4455566666666666666544 34555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=155.35 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=127.0
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
+...+.|+ +.|++++|.+.++++... .++..++..+.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 34455566 678899999999988432 24456777888889999999999764 566688889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
+++|...++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766653 4557788889999999999999888774 36777999999999999999999999987
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
+ ..|..++.++.+.|++++|.+.+..+ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 7 36888999999999999999999876 2567899999999999999999554443 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (596)
.+.-...++..|.+.|++++|+.+++...... ......|+-+.-+|++- +++.+.++.|.. +.++++ +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44455578888999999999999999887655 33566777776666653 344455554442 222333 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALEL 361 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (596)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888888888999888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-16 Score=150.41 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=199.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (596)
.+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34555666667777777777777766653 3456666677777777777777777777766553 334566666666777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 007613 209 QSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (596)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (596)
..|++++|.+.++++... .|+. ..+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS----QPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT----STTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 777777777777766643 1211 111111000 0011111122 22 37788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (596)
++|.+.++++.+.... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887544 78889999999999999999999999998875 556888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------------TITYSILLVACERKDDVEVGLMLL 432 (596)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~ 432 (596)
.+.. +.+..+|..+...|.+.|++++|.+.|+++.+. .|+ ..++..+..++...|+.++|..++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8754 456889999999999999999999999998764 344 678889999999999999999998
Q ss_pred HHHH
Q 007613 433 SQAK 436 (596)
Q Consensus 433 ~~~~ 436 (596)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 7654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=160.24 Aligned_cols=311 Identities=13% Similarity=0.135 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007613 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (596)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (596)
...|++++|.++++++..|+ +|..++.++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35577999999999996654 899999999999999999999965 3577799999999999999999999887
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC
Q 007613 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (596)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (596)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 77664 5667889999999999999999888874 3677899999999999999999999998762
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (596)
.|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 150 ----n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 150 ----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 5889999999999999999999988 257899999999999999999966554422 2344455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (596)
..|.+.|++++|..+++...... +-....|+-|.-.|++- +++.+..+.|..- .+++| +...|..++-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999888665 55677788777777754 4556666665422 12222 34568888889
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (596)
|.+.++++.|.. .|.+. +|+...-..+.....+..+.+--.
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyY 332 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYY 332 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHH
Confidence 999999998876 34442 334333333334445555544333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-13 Score=147.21 Aligned_cols=369 Identities=14% Similarity=0.171 Sum_probs=267.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCC
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (596)
..+...++..|.+.+|+++++++...+. ++.+......++....+. +......+..+...-+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3445666799999999999999985542 224445544444333322 2233333333322222 4447778889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (596)
+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|++.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999852 22233344433 678899999998865 3577899999999999999999999976
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 007613 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (596)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (596)
. -|...|..++.++.+.|++++|.+.+...++. .++....+.++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 4 26788899999999999999999999887653 344334445889999999988644432 1 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
+...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5567778999999999999999999985 37999999999999999999999876 35689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH--hcCC
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACE--RKDD 424 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~ 424 (596)
+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... +.|. ...|+-+...++ +-++
T Consensus 1259 acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHH
Confidence 9999999999988776543 4667788999999999999999999988764 3333 334544444444 4556
Q ss_pred HHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHh
Q 007613 425 VEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR 456 (596)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p------~~~~~~~li~~~~~ 456 (596)
..++.++|..-.. +.| +..+|.-++-.|.+
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHh
Confidence 6666666653322 322 34567777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-14 Score=148.60 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHcCCChhHHHHH
Q 007613 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--TMNALIT-ALCDGDQLPKTMEV 396 (596)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~ 396 (596)
.+.|...+....+.. +.+..++..+...|...|++++|...|++..+....+... .+..+.. .+.+.|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455556665555543 3334455556666666666666666666665542211110 1111111 22345666666666
Q ss_pred HHHHHh
Q 007613 397 LSDMKS 402 (596)
Q Consensus 397 ~~~m~~ 402 (596)
|++..+
T Consensus 395 y~kal~ 400 (472)
T 4g1t_A 395 FIEGVK 400 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-15 Score=139.41 Aligned_cols=246 Identities=12% Similarity=0.069 Sum_probs=127.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (596)
..|+++.|+..+++.... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcHH
Confidence 445555555555544332 2221 2223344555555555555543322 11334444555555555555555
Q ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 252 RAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (596)
Q Consensus 252 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (596)
+|.+.++.+...+. +.+...+..+...+.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555554432 23444455555555556666666655554 124455555555566666666666666665
Q ss_pred HHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 331 KNQGISVGIIS---YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 331 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5543 22111 1122233334466666666666666542 3455666666666666666666666666655531 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 007613 408 NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (596)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 437 (596)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45556666666666666644 4566666665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=146.49 Aligned_cols=360 Identities=11% Similarity=-0.027 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhCC------------CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-
Q 007613 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G- 122 (596)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 122 (596)
..++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3444555666666677777777665431 223457777777888888888888777766542 1
Q ss_pred C-CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 123 L-KADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (596)
Q Consensus 123 ~-~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (596)
. .....++..+..++.+.| ++++|++.|++..+.. +.+...+..+... +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 123456665555555543 5778888888877653 3345555554444 334566677777777776653 334
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007613 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (596)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (596)
...+..+...+.. .+++++|.+.+++.... .+.+..++..+...|.+.|++++|...+++..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 5555555444443 35667788877776653 13345667777778888888888888888877765 5556666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 273 TIAINCCSQT-------------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 273 ~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
..+...|... +.++.|...|++..+.... +..++..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555432 3467888888888775433 4456777888899999999999999998887
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007613 334 GISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (596)
Q Consensus 334 ~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (596)
...+... .+..+.. .+...|+.++|...|++..+. .|+...+...+ ..+.+++++.... -+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~~~~~~~l~~-~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQKIAKMRLSK-NGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHHHHHHHHHHH-CC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHHHHHHHHHHh-CCCCHH
Confidence 5433221 2223322 235678899999999988875 35433332222 3344555555543 244567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007613 411 TYSILLVACERKDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (596)
+|..+...+...|++++|.+.|++.++.|
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888899999999999999999988753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-12 Score=139.19 Aligned_cols=312 Identities=13% Similarity=0.145 Sum_probs=239.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHH
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (596)
...++..|.++||..+|++.... .... .. +....+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-----~~A~-~V---Lie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-----TSAV-QV---LIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-----HHHH-HH---HHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 45566899999999999986311 1111 11 1235678999999998874 466788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.. -| ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele-~f---I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE-EF---IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH-HH---Hh-
Confidence 9999653 467788889999999999999999998877653 44444556999999999988533 33 22
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH
Q 007613 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (596)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (596)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 446677778899999999999999999874 26889999999999999999999876 34588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (596)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999888766542 2355667789999999999999999998877655 4455567666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHH
Q 007613 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 352 ~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 394 (596)
. +++.++.+.|..-.. ++| +...|.-++-.|.+.|+++.|.
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4 556667676664332 222 4667999999999999999998
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=129.10 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (596)
..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.. +.+..+|..+...+.+.
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333332 2223334444444444444444444444443321 12233344444444444
Q ss_pred CChhHHHHHHHHH
Q 007613 388 DQLPKTMEVLSDM 400 (596)
Q Consensus 388 g~~~~A~~~~~~m 400 (596)
|++++|...|++.
T Consensus 221 g~~~~A~~~~~~a 233 (258)
T 3uq3_A 221 KEYASALETLDAA 233 (258)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=139.98 Aligned_cols=344 Identities=11% Similarity=0.020 Sum_probs=198.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHH---HHHHHHHhhCCCCChHhHHHHHHHHHhc
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (596)
....+.+.+.|++++|++.|++..+.|.. ... ..+..++...|+. ++|+..|++..+.+...+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 44556677889999999999988887632 221 1223333445555 8888888877655666777777755555
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 007613 106 K-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (596)
Q Consensus 106 g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (596)
+ ++++|+..|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 67888888888887663 22 5666777776655433 3444555544433 45566677777777774
Q ss_pred HHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc---
Q 007613 178 VAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (596)
Q Consensus 178 ~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (596)
+++ +..+++..... +...+..|...|...| +.++|++.|......+ .++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGS
T ss_pred cccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCC
Confidence 443 33334333322 2336667777777777 7778888887776642 34444445555666444
Q ss_pred -CChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 007613 248 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----- 318 (596)
Q Consensus 248 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 318 (596)
+++++|...|++.. .+ ++..+..+... | ...+++++|++.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 57778888887776 33 34566666665 3 45677888888887777765 4556666666665 44
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (596)
++++|...|++.. .| +...+..|..+|.. ..+.++|...|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7777777777766 33 55666666666665 337777777777777654 22344445555543 3456
Q ss_pred hHHHHHHHHHHhCC
Q 007613 391 PKTMEVLSDMKSLG 404 (596)
Q Consensus 391 ~~A~~~~~~m~~~g 404 (596)
++|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-13 Score=127.03 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPD----RVVFNAL 203 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l 203 (596)
+..+...+...|++++|.+.|++..+.. .+..+|..+...|...|++++|+..|++..+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 3344444444444444444444444444433210 011 2344444
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (596)
...+...|++++|...|++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE----HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 45555555555555555544432 2221 22334455555555555555443 223445555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (596)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (596)
++++|...|++..+.... +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666665554332 45556666666666666666666666665553 3345566666666666666666666666
Q ss_pred HHHh
Q 007613 364 HMKS 367 (596)
Q Consensus 364 ~m~~ 367 (596)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=124.03 Aligned_cols=112 Identities=15% Similarity=-0.012 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (596)
|++++|+..|++..+..+. +...+..+...+...|++++|+..|++..+.. .+...+..+..+|...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444433221 23334444444444444444444444444433 33344444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 363 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
++..+.. +.+...+..+...+.+.|++++|+..|+
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4443322 1233344444444444444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=124.48 Aligned_cols=199 Identities=13% Similarity=-0.055 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (596)
++...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344455566666666677777777776666654 455666666666777777777777777766665433 455666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 312 DFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (596)
Q Consensus 312 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (596)
..+... |++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 99999999999998875 4567888889999999999999999999998876 778889999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999988742 3356778888889999999999998887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-12 Score=119.77 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
..+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445556666667777777777777666654 445666777777777777777777777776655432 556666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 315 GHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
...|++++|...++.+.+.+. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777666222 2245566667777777777777777777776543 33566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 394 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
...++++.+. .+.+...+..+...+...|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777653 2345556666777777777777777777777763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=127.24 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=156.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
...|+.+...+.+.|++++|+..++.+.+.. +-+..+|+.+..++...|+ +++|++.|++.++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3466777777777788888888888877764 4456777777777878885 888888888877764 446677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cCC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~ 249 (596)
.+.+.|++++|+..|++++... +-+...|..+..++.+.|++++|+..+++++... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 7888888888888887777653 3356677777777777777777777777777531 2345667777777777 455
Q ss_pred hhHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 007613 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (596)
Q Consensus 250 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 318 (596)
.++| +..|++....+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4666 36666666655 455667777777776666 466777766666 322 224556666666666553
Q ss_pred -----CHHHHHHHHHHH
Q 007613 319 -----KVEAAFEILQEA 330 (596)
Q Consensus 319 -----~~~~a~~~~~~~ 330 (596)
..++|.++++.+
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 236666666666
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=122.99 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
....+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..............+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444331 112224444444444444444444444444431100000112234444444444
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
|++++|...|++..+.. +.+..++..+...|...|++++|+..|++..+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 44444444444444433 223344444444444444444444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-12 Score=115.58 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
.|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233344444444444444444444444443332 223333444444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 007613 174 KA-GQVAKAFGAYGIMR 189 (596)
Q Consensus 174 ~~-g~~~~A~~~~~~m~ 189 (596)
.. |++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKAL 104 (225)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 44 44444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-12 Score=117.37 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=95.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555555555666666666665555543 3345555555555555555555555555555442 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (596)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 555555555555555554421222 23344444444555555555555554444320 12233444444444444444
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444332 23334444444444444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-12 Score=114.61 Aligned_cols=204 Identities=12% Similarity=-0.000 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (596)
+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|++..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678888889999999999999999988764 4567888899999999999999999999988763 446778888889
Q ss_pred HHhcc-CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007613 206 ACGQS-GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (596)
Q Consensus 206 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (596)
.+... |++++|...++++... +..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 99999 9999999999998861 22333 5677888889999999999999999988875 556788899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999998876542367777778888889999999999998887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-12 Score=121.36 Aligned_cols=231 Identities=10% Similarity=-0.061 Sum_probs=111.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhc
Q 007613 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQ 209 (596)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 209 (596)
.....+...|++++|.+.|++..+.. +.+..++..+...|...|++++|+..|++....+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444445555555555555554432 22333455555555555555555555555544221111 1224455555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
.|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554321 1223445555555555555555555555555442 334445555552222233666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQG-ISVG------IISYSSLMGACSNAKNWQKAL 359 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 359 (596)
+.|++..+.... +...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655554322 34444445555555555 555555555544321 0111 134555566666666666666
Q ss_pred HHHHHHHhC
Q 007613 360 ELYEHMKSI 368 (596)
Q Consensus 360 ~~~~~m~~~ 368 (596)
..|++..+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-12 Score=125.80 Aligned_cols=249 Identities=11% Similarity=0.028 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (596)
...|..+..++.+.|++++|++.|++.++.. +-+..+|+.+...+.+.|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888888999999999999988764 4567888999999999996 999999999998764 346778888888
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 007613 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (596)
++...|++++|+..|++++... +.+...|..+..++.+.|++++|+..|+++.+.+ +.+..+|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999888641 3356788888888899999999999999998887 6678888888888888 566
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007613 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (596)
Q Consensus 285 ~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (596)
.++| +..|++..+.... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5666 4777777776543 5667777777777777 577888887776 33 3456677777888887764
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 007613 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~ 385 (596)
..++|.++|+++ .+.. +.....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 257788888887 5432 223455665555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=127.05 Aligned_cols=220 Identities=11% Similarity=-0.014 Sum_probs=95.7
Q ss_pred CChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (596)
|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444444321 0123344444445555555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
..|++..... +.+..++..+...+...|++++|...|+++... .|+.......+..+...|++++|...++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555544432 223444445555555555555555555554432 22222222233333444555555555544443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
.. +++...+. ++..+...++.++|...+.+........ +...+..+...+...|++++|...++.+.+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32 22222222 3444444444555555555443321100 0233444444444444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-11 Score=113.27 Aligned_cols=221 Identities=11% Similarity=-0.007 Sum_probs=101.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007613 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (596)
..++..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++.... .+...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 3344444444444444444444444444421 23344444444444 44444444444444432 133344
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (596)
Q Consensus 238 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (596)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444444444 444455555544444432 33444444444444 455555555555544433 2333444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (596)
Q Consensus 310 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (596)
+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444 445555555555544443 23344444445555 555555555555554432 234444444
Q ss_pred HHHHc----CCChhHHHHHHHHHHh
Q 007613 382 TALCD----GDQLPKTMEVLSDMKS 402 (596)
Q Consensus 382 ~~~~~----~g~~~~A~~~~~~m~~ 402 (596)
..|.+ .+++++|.+.|++..+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHH
Confidence 44444 4555555555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=128.40 Aligned_cols=242 Identities=10% Similarity=-0.051 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHhhCCC-------CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 007613 74 QKAIKEAFRFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (596)
Q Consensus 74 ~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (596)
.+++++|+..|+++.. .+..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3555555555554321 134567777778888888888888888887764 45677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888887763 445777888888888888888888888888765 344444444455556668888888888776653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (596)
.+++...+ .++..+...++.++|...+......... .+..++..+...|.+.|++++|...|++....... +
T Consensus 174 ---~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 248 (275)
T 1xnf_A 174 ---SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N 248 (275)
T ss_dssp ---SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred ---CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h
Confidence 12333333 3566677777778888888776554311 11467888888899999999999999988876432 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 304 EVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
. .....++...|++++|++.+
T Consensus 249 ~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C---HHHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHHhhHHHH
Confidence 2 22344566677777776655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-13 Score=121.75 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=126.6
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666677777788888888887777653 4466777777777778888888888887777653 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCh
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (596)
.|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 7777778888877777776653 335666777777777777777777777776653 123455666666777777777
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
++|...|+.+.+.. +.+..++..+...|.+.|++++|...++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777776654 4456667777777777777777777777766653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-11 Score=113.49 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCHHH
Q 007613 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (596)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (596)
+..++..+...+...|++++|.+.|++.... .+...+..+...|.. .+++++|...|++..+.+ +..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5677888889999999999999999998862 345678888889999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007613 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (596)
Q Consensus 272 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (596)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999999 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (596)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (596)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888988 999999999999998853 57788889999999 999999999999998864 36677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 007613 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~~~~~g 439 (596)
...+.. .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999999865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=130.74 Aligned_cols=342 Identities=11% Similarity=-0.013 Sum_probs=234.5
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCC-CChHhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 007613 67 FFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (596)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (596)
+.....+.|++++|++.|++... .+...+..+...+...|+. ++|...|++..+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 44556678999999999987642 3455566677777778888 8999999988754 5566677777555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-
Q 007613 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV- 213 (596)
Q Consensus 142 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 213 (596)
+.++|.+.|++..+.| +...+..|...|...+.. .++.+.+......| +...+..|...|...+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999999876 333777888888776553 34556666665555 345666777778777754
Q ss_pred ---HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 007613 214 ---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (596)
Q Consensus 214 ---~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (596)
+.+..++..... -.|+ .+..+...|.+.| +.++|.+.|++..+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHc----CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 444555555432 2344 7778888899999 8999999999999988 66667667788888665 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CH
Q 007613 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (596)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (596)
++++|++.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 43 44556666665 3 46899999999999999887 6777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 007613 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (596)
++|...|++.. ..+...+..|...|.. ..++++|...|++..+.|. |+ ....|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHH
Confidence 99999999887 3467788888877776 4489999999999988764 33 34444444443 468999
Q ss_pred HHHHHHHHHHcCC
Q 007613 428 GLMLLSQAKEDGV 440 (596)
Q Consensus 428 a~~~~~~~~~~g~ 440 (596)
|...++...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998774
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-12 Score=120.71 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
.+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...++++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 33334444444444444444444433321 12233444444444444444444444444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-10 Score=116.96 Aligned_cols=404 Identities=8% Similarity=0.004 Sum_probs=266.9
Q ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH---HHHHHHHHhhCC-----CCChHhH
Q 007613 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (596)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (596)
++.+|..|+ +.+.++.+..+|+++...- |....++...+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666665 6789999999999999886 6666666666666777788 999999998753 2788889
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHH
Q 007613 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCAK---------SGKVDAMFEVFHEMVN 155 (596)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 155 (596)
...+.-..+.++. +...++|+.... .|. .+ +...|...+..... .++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766655543 334477776554 455 44 45678877766542 3456788899998885
Q ss_pred CCCCCCHhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 007613 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (596)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p-----~---~ 197 (596)
.....-..+|......-.. ...++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222222334322221111 1223445555554321 111 1 1 0 1
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCCCH
Q 007613 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (596)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~ 269 (596)
..|...+.---..+ ..+.+..+|+++... ++-+...|...+..+.+.|+.++|. .+|++..... +.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 23444444322222 123455678877763 3345667878888888889988896 9999888753 6677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
..|..++...-+.|+++.|.++|+++..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888888999999999999998875310 132 2357777777778888999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007613 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (596)
.+.+.........|...+..-.+. ++.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 988761122234444333333444 4589999999988765 34567778888888888899999999999988753212
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2356778888788899999999999999874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=128.34 Aligned_cols=303 Identities=14% Similarity=0.021 Sum_probs=154.6
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CC
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PN 161 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~ 161 (596)
....+......+...|++++|...|+...+.+ +.+ ..++..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455666677778888888888888877764 233 246777777788888888888887775432 111 12
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------HHHH
Q 007613 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a 216 (596)
..++..+...|...|++++|...|++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44667777777778888888877776654210 011 2355566666666666 5555
Q ss_pred HHHHHHHhhCCCCC--CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 217 FDVLAEMNAEVHPV--DP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (596)
Q Consensus 217 ~~~~~~~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (596)
...+.+........ .+ ...++..+...|...|++++|...+++..+...
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------------------- 218 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK---------------------------- 218 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----------------------------
Confidence 55555443210000 00 012334444444445555555544444432210
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 294 DMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISV-GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 294 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
..+..+ ...++..+...+...|++++|...+++..+.. ..+ ...++..+...|.+.|++++|...+++..+
T Consensus 219 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 219 ---EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 000000 01234444444555555555555554443221 000 133445555555566666666655555443
Q ss_pred CCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCH
Q 007613 368 IKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDV 425 (596)
Q Consensus 368 ~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 425 (596)
... .++ ..++..+...|...|++++|.+.+++..+ .+..+. ..++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 100 011 33455555666666666666666655432 111111 23444555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-11 Score=105.63 Aligned_cols=164 Identities=16% Similarity=0.051 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
.+|..+...|.+.|++++|++.|++..+.+ +.+..++..+...|.+.|++++|...+......... +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 344444445555555555555555544443 334444445555555555555555555444443322 333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
...++++.|...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444444432 2234444444444444445555544444444332 223444444444444444444444
Q ss_pred HHHHHHHh
Q 007613 395 EVLSDMKS 402 (596)
Q Consensus 395 ~~~~~m~~ 402 (596)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=105.37 Aligned_cols=173 Identities=16% Similarity=0.054 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007613 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (596)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (596)
++.+|..+...|.+.|++++|++.|++..+..+. +...+..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5688999999999999999999999999987654 78889999999999999999999999998875 456778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (596)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988754 4568889999999999999999999999988742 3457789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHH
Q 007613 428 GLMLLSQAKEDGVIPNLVM 446 (596)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~ 446 (596)
|.+.|++.++ +.|+...
T Consensus 160 A~~~~~~al~--~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAK 176 (184)
T ss_dssp HHHHHHHHHH--TTHHHHH
T ss_pred HHHHHHHHHh--CCccCHH
Confidence 9999999998 5565543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-12 Score=125.59 Aligned_cols=282 Identities=14% Similarity=0.028 Sum_probs=179.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 007613 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (596)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 195 (596)
......+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445556666777777788888888887777653 222 245667777777777777777777765432 1111
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 196 D-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 196 ~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
. ..++..+...+...|++++|...+.+....... .++.. ....++..
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~-------------------------------~~~~~~~~ 132 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKV-------------------------------GEARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHH-------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-ccccc-------------------------------chHHHHHH
Confidence 1 334555666666667777666666655431000 01100 00223444
Q ss_pred HHHHHHhcCC--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 275 AINCCSQTGD--------------------WEFACSVYDDMTK----KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (596)
Q Consensus 275 li~~~~~~g~--------------------~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (596)
+...|...|+ +++|...+.+... .+..| ...++..+...+...|++++|...+++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444555555 5555555554332 11111 134567777778888888888888877
Q ss_pred HHHCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 330 AKNQG----I-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 330 ~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
..+.. . .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 66431 0 11134788899999999999999999998764210 112 56788899999999999999999998
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 400 MKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 400 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
..+. +-.+. ..++..+...+...|++++|...+++..+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7642 11111 456788889999999999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-10 Score=108.28 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007613 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (596)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (596)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666666542 1233445555555544 34665 78888888877732245667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 007613 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (596)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (596)
.+.|++++|..+|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775332 232 67778888888888888888888888765 334455544443322 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (596)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (596)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887643 3467888889999999999999999999988753 455 356788888888889999999999999
Q ss_pred HHHc
Q 007613 435 AKED 438 (596)
Q Consensus 435 ~~~~ 438 (596)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-10 Score=108.30 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHH-CCCCCCHhhHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (596)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++.++ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56677777776653 4556677766666543 4665 677777777765 22 334556777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-HcCCh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (596)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +++...|........ ..|+.
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 777777777777777664 333 22 56666666666777777777777766431 122233332222211 24666
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (596)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (596)
++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665543 3455566666666666666666666666665542 222 2345555555555556666666665
Q ss_pred HHHHHC
Q 007613 328 QEAKNQ 333 (596)
Q Consensus 328 ~~~~~~ 333 (596)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=127.36 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=152.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHhh
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----G-IEPNVHT 164 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~ 164 (596)
.+..+...+...|++++|...|+.+.+.+ +.+. .++..+...|...|++++|.+.|++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667888899999999999888764 3333 46778888888899999999888887643 1 1223566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 222 (596)
+..+...|...|++++|...|++.... +- +....++..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 778888888888888888888876543 10 1123356666677777777 6666666555
Q ss_pred HhhCCC--CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 223 MNAEVH--PVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 223 ~~~~~~--~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
...... +-.+ ...++..+...|...|++++|...+++..+.... .+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 432100 0000 1123444444555555555555555444332100 0000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 007613 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K 369 (596)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 369 (596)
....++..+...+...|++++|...+++..+... .....++..+...|...|++++|...+++..+. +
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0011344444444455555555555444433210 011334555555556666666666655554431 0
Q ss_pred C-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 370 L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 370 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
. .....++..+...|.+.|++++|.+.|++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 00123455566666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-12 Score=125.70 Aligned_cols=276 Identities=14% Similarity=0.010 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHH
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN-----VKPDRVV 199 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~ 199 (596)
.+..+...+...|++++|.+.|++..+.. +.+. .+|..+...|...|++++|+..|++..... .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34444555566666666666666666542 1122 345556666666666666666666655420 0111223
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHH
Q 007613 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINC 278 (596)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 278 (596)
+..+...|...|++++|...+.+..... ...+ .+....++..+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA---------------------------------RQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------------HHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------------------------HHhhchHHHHHHHHHHHHH
Confidence 3344444444444444444444433210 0000 01113355566666
Q ss_pred HHhcCC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007613 279 CSQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (596)
Q Consensus 279 ~~~~g~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (596)
|...|+ +++|++.+++..+. +..+ ...++..+...+...|++++|...+++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666666 66666666654331 1111 2246667777888888888888888877653210
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---
Q 007613 337 -----VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL--- 403 (596)
Q Consensus 337 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 403 (596)
....++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|...+++....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1123778889999999999999999998764210 01 1467888899999999999999999987652
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 404 -GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 404 -g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
+..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346778888999999999999999998873
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-09 Score=108.19 Aligned_cols=394 Identities=12% Similarity=0.051 Sum_probs=268.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCC---hHHHHH
Q 007613 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQ 113 (596)
Q Consensus 40 ~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~ 113 (596)
...+-+..|++.+..+ |.+...+..++..+.+.+.++.+..+|+.+. +.....|...+..-.+.++ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455677778887877 7788888888888887788999999998764 5567789988888888888 999999
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CHhhHHHHHHHHH--------
Q 007613 114 VLRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA-------- 173 (596)
Q Consensus 114 ~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~-------- 173 (596)
+|++..... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998754 148888999888877666654 334578887554 465 45 3568888887543
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHh----------ccCCHHHHHHHHHHHhhCCCCC----C----
Q 007613 174 -KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPV----D---- 231 (596)
Q Consensus 174 -~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~----------~~g~~~~a~~~~~~~~~~~~~~----~---- 231 (596)
..++++.+..+|++.+......-..+|.. +-.... ...+++.|...+.++.....++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34467889999999985321111233322 222210 0112334455554432110111 0
Q ss_pred -------C-----C---HHHHHHHHHHHHHcC-------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 232 -------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 232 -------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
| + ...|...+..--..+ ..+.+..+|++..... +.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 134444444322222 1234567788887764 668899999999999999999997
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHH
Q 007613 290 -SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMG 347 (596)
Q Consensus 290 -~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~ 347 (596)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999988743 23566677788888899999999999999876410 12 1346888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 348 ACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (596)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (596)
...+.|..+.|+.+|.+..+. + ......|...+..-.+. ++.+.|.++|+...+. .+-+...+...+.-....|+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 888899999999999999875 2 12334444333333344 4589999999998875 444566677888888889999
Q ss_pred HHHHHHHHHHHHcC
Q 007613 426 EVGLMLLSQAKEDG 439 (596)
Q Consensus 426 ~~a~~~~~~~~~~g 439 (596)
+.|+.+|++.++..
T Consensus 521 ~~AR~lferal~~~ 534 (679)
T 4e6h_A 521 SQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=119.14 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHhhH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTY 165 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~ 165 (596)
+......+...|++++|...++.+.+.. +.+ ..++..+...+...|++++|.+.+++.... +- +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3334445555666666666666655543 222 234555555555566666666655554321 10 0113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
..+...|...|++++|...+++..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 444445555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-11 Score=119.40 Aligned_cols=308 Identities=9% Similarity=0.005 Sum_probs=139.9
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C--CchHHHHHHHH--HHHhhhHHHHHHH-----------HHHhh
Q 007613 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-L--DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFKL 86 (596)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~-~--~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~~ 86 (596)
..+..-+..|-..++.+++++|..+++++.+.-. . ..+...+..++ +.....+.++.+. ..++.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 4566777889999999999999999999876421 1 12222222121 1111222333333 33333
Q ss_pred CC--CCChHh------HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007613 87 VP--NPTLST------FNMLMSVCASSKDSEGAFQVLRLVQEAGL-KA----DCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (596)
Q Consensus 87 ~~--~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (596)
+. +.+... +......+...|++++|...++...+.-. .+ ...++..+...|...|++++|.+.+.+.
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 001111 11133344555666666666655543200 01 1234555555555556665555555554
Q ss_pred HHCC--C----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 007613 154 VNAG--I----EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (596)
Q Consensus 154 ~~~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (596)
.+.- . .....+++.+...|...|++++|+..|++..+... .++..
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 221 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ---------------------------- 221 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------------------------
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH----------------------------
Confidence 4310 0 00123444555555555555555555554432100 00000
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 007613 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-----YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-- 299 (596)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-- 299 (596)
....++..+...|...|++++|...|++..+ ...+....++..+...|.+.|++++|...+++..+..
T Consensus 222 -----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 222 -----LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0012344444444444555544444444433 1112223444555555555555555555555443210
Q ss_pred --CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 300 --VIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 300 --~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
-......+..+...+...|+ +++|..+++.. +.. .....+..+...|.+.|++++|...|++..
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00011123344445555555 44444444433 211 123345556666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-12 Score=120.78 Aligned_cols=271 Identities=15% Similarity=0.026 Sum_probs=153.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVF 200 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~ 200 (596)
+......+...|++++|...|++..+.. +.+ ..++..+...|...|++++|...+++.... +..| ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344555566666666666666666542 122 245566666666666666666666654321 1111 13445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCC--------------------hhHHHHH
Q 007613 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQ--------------------VDRAREV 256 (596)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 256 (596)
..+...+...|++++|...+.+....... .++ ..++..+...+...|+ +++|...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55666666666666666666655431100 111 2355556666666666 6666666
Q ss_pred HHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 007613 257 YKMIHKY----N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD----EVFLSALIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 257 ~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~ 326 (596)
+++.... + .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554332 1 011133566666667777777777777666543210 011 23566666677777777777777
Q ss_pred HHHHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChhHHHHH
Q 007613 327 LQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPTVSTMNALITALCDGDQLPKTMEV 396 (596)
Q Consensus 327 ~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (596)
+++..+.. .. ....++..+...|...|++++|...+++..+. +. .....++..+...|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 76655421 00 11445666777777778888777777766532 10 01134566777777888888888888
Q ss_pred HHHHHh
Q 007613 397 LSDMKS 402 (596)
Q Consensus 397 ~~~m~~ 402 (596)
+++..+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-11 Score=116.68 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=147.5
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCCHHHHHH
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYTI 274 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~ 274 (596)
...+...|++++|...+++.......... ...++..+...|...|++++|...+.+..+... +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666665542111111 123455666666667777777766666544310 111346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 007613 275 AINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSS 344 (596)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 344 (596)
+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777788888888888877776542110 11 236677777888888888888888877762 22 334667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007613 345 LMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll 416 (596)
+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ .++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888877642 111112335667777888888 77777777665 23333 34566778
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007613 417 VACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..+...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-11 Score=122.94 Aligned_cols=197 Identities=10% Similarity=-0.095 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007613 196 DRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (596)
Q Consensus 196 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (596)
+...+..+...+...|++ ++|.+.|++..... +.+...+..+...|.+.|++++|.+.|++..+.+ |+..++..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHH
Confidence 344444444555555555 55555555544321 1123444555555555555555555555554432 33445555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 007613 275 AINCCSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------GKVEAAFEILQEAKNQGIS- 336 (596)
Q Consensus 275 li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~- 336 (596)
+...|... |++++|+..|++..+.... +...|..+..+|... |++++|...|++..+.. +
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 253 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK 253 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence 55555555 5566666666655554332 455555555566555 66777777777666653 2
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007613 337 --VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (596)
Q Consensus 337 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (596)
.+...+..+..+|.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356677777777777777777777777776543 334566777777777777777777766554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-11 Score=121.52 Aligned_cols=225 Identities=12% Similarity=-0.008 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (596)
+++++..++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+..+|..+...|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444554443322 23455555555555556666 66666666555442 2335555555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 007613 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (596)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (596)
+..+. .|+...+..+...+...+.- + ...+.|++++|...|++..+.. +
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~-------------------~---------~~~~~g~~~~A~~~~~~al~~~-p 210 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTD-------------------S---------GDEHSRHVMDSVRQAKLAVQMD-V 210 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCS-------------------C---------HHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccC-------------------C---------hhhhhhhHHHHHHHHHHHHHhC-C
Confidence 55544 34444444455555444000 0 0000055555555555555543 3
Q ss_pred CCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007613 267 GTPEVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (596)
Q Consensus 267 ~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (596)
.+...|..+...|... |++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 3455555555555555 6666677766666654320 156667777777777777777777777776654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 337 VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.+...+..+..++...|++++|...+.++.
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455667777777777777777777666553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=120.51 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=53.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 158 (596)
..++..+...+...|++++|...++.+.+. ..+....++..+...|...|++++|.+.+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566666666666777776666666542 11223445555666666666666666666655532 11
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
+....++..+...|...|++++|...|++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1123445555555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=111.13 Aligned_cols=241 Identities=12% Similarity=0.033 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------C
Q 007613 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (596)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 264 (596)
+..++..+...+...|++++|..+++++..... ........+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788888999999999999999999876200 11223556778889999999999999999988764 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007613 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (596)
Q Consensus 265 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 333 (596)
.+....++..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567888999999999999999999988764 2222 3456788888999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHHcCCChhHHHH
Q 007613 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPT-------VSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 334 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 395 (596)
+ .+....++..+...|.+.|++++|...|+++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 1233557888999999999999999999998752 11111 1223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 396 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.++..... .+.+..++..+..++.+.|++++|.+++++.++
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776653 123456788899999999999999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-09 Score=105.32 Aligned_cols=229 Identities=11% Similarity=-0.069 Sum_probs=158.3
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC--C----CCHHHHH
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYT 273 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~ 273 (596)
...+...|++++|...|.+....... .++ ..++..+...|...|+++.|...+++..+... . ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678888888888777643211 122 34566677778888888888888777654311 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 343 (596)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8888888888888888888876542 1111 124667778888889999999999988876 43 33367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~l 415 (596)
.+...|.+.|++++|...+++..+.. -+.....++.+...+...++ +.+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999999887531 11223456666667777787 77777777762 22333 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007613 416 LVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~ 437 (596)
...+...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999988765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-09 Score=103.59 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=145.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHH
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKA 243 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ll~~ 243 (596)
+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+.+....... .++. .++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence 344555555555555544332111111 2333444455555555555555554321000 1111 123444555
Q ss_pred HHHcCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHHHHHHH
Q 007613 244 CANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALID 312 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~li~ 312 (596)
+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++....... + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666655432 111 1 2234555666677777777777777766543211 1 2345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITA 383 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~ 383 (596)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77777888888777777654311111 11111 23344667888888888887776532111 12345667778
Q ss_pred HHcCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+...|++++|...+++... .|..++. .++..+..++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887643 2222222 2555666778888999999888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=95.77 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 420 (596)
.+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+.
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 33333344444444444444444333321 2233334444444444444444444444433321 122333444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 007613 421 RKDDVEVGLMLLSQAK 436 (596)
Q Consensus 421 ~~g~~~~a~~~~~~~~ 436 (596)
..|++++|...++++.
T Consensus 156 ~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 156 QMGRHEEALPHFKKAN 171 (186)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=95.52 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 4456777888999999999999999988765 567889999999999999999999999999876433 67888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 5578889999999999999999999999988764 45678899999999999999999
Q ss_pred HHHHHHHHh
Q 007613 394 MEVLSDMKS 402 (596)
Q Consensus 394 ~~~~~~m~~ 402 (596)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-09 Score=102.78 Aligned_cols=268 Identities=12% Similarity=0.032 Sum_probs=144.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhhHHHHH
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li 169 (596)
...+...|++++|...++.........+.. +++.+...+...|++++|.+.+++.....- ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566788888888888777654222222 455666777778888888888877654210 111 22355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 240 (596)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7777788888888887776542 211 21 234555666777778888887777776543211111 12345556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li 311 (596)
...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666677777777777776665431111 101111 22233556666776666666655432211 012334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKNQ----GISVGI-ISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
..+...|++++|...++..... +..++. .++..+..++...|+.++|...+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555556666665555554332 111111 133344444555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-09 Score=104.85 Aligned_cols=232 Identities=10% Similarity=0.002 Sum_probs=166.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---C-CHHHH
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---P-DHITI 237 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~-~~~~~ 237 (596)
.....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+.+......... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556788999999999988875411 122 34677788888899999999888887764211111 1 14467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYN----I-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFL 307 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 307 (596)
+.+...|...|++++|...|++..+.. . .....++..+...|...|++++|+..|++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 778888999999999999988776531 1 11235678888999999999999999998876 4333 36678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHH
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGI----SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNA 379 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ 379 (596)
..+...+.+.|++++|...+++..+... +.....+..+...|...|+ +.+|...++... ..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 8888899999999999999998876421 2223456667777778888 777777777632 1222 345667
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007613 380 LITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+...|.+.|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=115.97 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...++.+...|.+.|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777777665 455677777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
+...|++++|++.|++..+.. +-+...++.+..+|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777664 4456677777777888888888888887777653 33466777777788888888877
Q ss_pred HHHHHHHHh
Q 007613 394 MEVLSDMKS 402 (596)
Q Consensus 394 ~~~~~~m~~ 402 (596)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-09 Score=96.88 Aligned_cols=200 Identities=17% Similarity=0.095 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (596)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (596)
.|...+......+.+.|++++|...|++..+...+++...+..+..++...|++++|++.|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3456777777788888888888888888887763366777777888888888888888888888776543 556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALI 381 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li 381 (596)
..+...|++++|...+++..+.. +.+. ..|..+...+.+.|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888887764 3334 44667777777888888888888888764 343 45666666
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
..|... +...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 666543 334445554432 22344444333 2344567788888888777 345543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=115.87 Aligned_cols=166 Identities=16% Similarity=0.101 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007613 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (596)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (596)
.+..+|+.|...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34678999999999999999999999999987544 67899999999999999999999999999876 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 007613 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDV 425 (596)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 425 (596)
.+|.+.|++++|.+.|++..+.. +.+...|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999998764 44688999999999999999999999999987 4565 67889999999999999
Q ss_pred HHHHHHHHHHHH
Q 007613 426 EVGLMLLSQAKE 437 (596)
Q Consensus 426 ~~a~~~~~~~~~ 437 (596)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-09 Score=95.05 Aligned_cols=203 Identities=13% Similarity=0.055 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
+.|+..+......+...|++++|...|++..... ..++...+..+..++...|++++|...|++..+.+ +.+..+|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHH
Confidence 3467888889999999999999999999998742 12677777778999999999999999999999876 55778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSS 344 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 344 (596)
.+...|...|++++|+..|++..+.... +. ..|..+...+...|++++|+..|+++.+.. +. +...+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 9999999999999999999999886543 44 457778888899999999999999998874 33 4567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
+..+|...| ...++.+...+ ..+...|..... ...+.+++|+..|++..+ +.|+...
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 888886554 44455555543 334455544432 335668999999999887 4566543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=101.94 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=83.3
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 007613 138 AKSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNAL 203 (596)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~l 203 (596)
...|++++|.+.|++..+. ..+....++..+...|...|++++|+..|++.... +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456677776666665541 11223556777777777778888887777776643 1112 23456666
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCC----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------C-CCCCHHH
Q 007613 204 ITACGQSGAVDRAFDVLAEMNAEVH----P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEV 271 (596)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 271 (596)
...+...|++++|.+.+.+...... + .+....++..+...|...|++++|...+++..+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6667777777777777766654200 0 0111334444445555555555555555554433 0 0111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
+..+...|...|++++|...|++..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444455555544444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=103.05 Aligned_cols=230 Identities=11% Similarity=0.008 Sum_probs=154.8
Q ss_pred hccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 007613 208 GQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIA 275 (596)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 275 (596)
...|++++|...+++..... ...+....++..+...|...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567776766666654410 011223567788889999999999999999988764 21 2235678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 007613 276 INCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIIS 341 (596)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 341 (596)
...|...|++++|...|.+.... ...| ...++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1112 3567788888999999999999999988765 1 1233567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH---hCC-CCC-C
Q 007613 342 YSSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK---SLG-LCP-N 408 (596)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g-~~p-~ 408 (596)
+..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+....+..+..... ..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988752 1111 22344444444444444333332211111 111 112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
..++..+...+...|++++|..++++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888999999999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=95.83 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQT-GDWEFACSVYDDMT 296 (596)
Q Consensus 271 ~~~~li~~~~~~-g~~~~a~~~~~~m~ 296 (596)
+++.+...|... |++++|+..|++..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 344444444443 55555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=81.68 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (596)
|..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 334444444444555555544444433221 33344444444444444444444444444332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444444322 1233444444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=80.68 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
.|..+...+...|++++|..+++.+.+.+ +.+..++..+...+...|++++|.+.|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35556666667777777777777766553 3456666666667777777777777777766553 344556666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
..|++++|.+.|+++.... +.+...+..+...+...|++++|...+.++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777776666542 23455566666666666677666666666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-07 Score=85.42 Aligned_cols=239 Identities=8% Similarity=0.065 Sum_probs=132.8
Q ss_pred CCcccChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH--HHHHHHHHHhhCC---CCCh
Q 007613 19 ANYAHDVSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTL 92 (596)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~ 92 (596)
..|+.....-...+..+.+.|.+ ++|+++++.++..+ |........-..+....+ .+++++.+++.+. +.+.
T Consensus 26 i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 26 ILYDEDYKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 34444444445555555555544 57888888888887 655555554445555555 6677777766543 3455
Q ss_pred HhHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHh
Q 007613 93 STFNMLMSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 93 ~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~ 163 (596)
.+|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-.-++.+.|+++ ++++.++++.+.. +.|-.
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~s 181 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNS 181 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHH
Confidence 5666555544 444 56667777776666654 446666666666666666666 6666666666654 44566
Q ss_pred hHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHhhCCCCCCCCHHH
Q 007613 164 TYGALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHIT 236 (596)
Q Consensus 164 ~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~ 236 (596)
.|+.-...+.+.+. ++++++.++++.... +-|...|+-+-..+.+.|+..+ +..+..++......-..+...
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 260 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA 260 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHH
Confidence 66655555555554 566666666655543 3355556555555555554332 223333332210000223444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
+..+...|.+.|+.++|.++++.+.+
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555555555555555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.2e-08 Score=89.86 Aligned_cols=184 Identities=10% Similarity=0.005 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 007613 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVFL 307 (596)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~ 307 (596)
+...+..+...+.+.|++++|...|+.+.+.. +.+ ..++..+..+|.+.|++++|+..|++..+..+ .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555566666777777777777777777654 333 56677777777777777777777777766432 112 3345
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 308 SALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (596)
Q Consensus 308 ~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (596)
..+..++.. .|++++|...|+++.+.. +.+......+.. +..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 555566666 677777777777766653 212222211111 000000 00112456
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 007613 380 LITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKED 438 (596)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~ 438 (596)
+...|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 778888999999999999998764 343 34566777777765 8899999999999874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-07 Score=88.38 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555565555443 44455555666666667777777777766654431 1345566666666777777777777777766
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007613 190 SKNVKP-----DRVVFNALITACG--QSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (596)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (596)
+. .| +..+...|..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 44 2344444444422 223 666677777766542 344223333444666666666666666655
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
.+.. -+.++.+...+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4321 03344555344444444454 5666666666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-08 Score=87.88 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007613 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (596)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (596)
+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6777788888888888888887765 4567788888888888888888888888887754 3456777777777765543
Q ss_pred --hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007613 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (596)
Q Consensus 390 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (596)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3344555554432 222223344445566678888999999988887 667766555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-08 Score=94.69 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 007613 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (596)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777665 33466788888888888776553 2111 1457788888888888888
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCH
Q 007613 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (596)
+|+..|++..+.... .+ ..++..+...|... |++++|+..|++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 888888776542110 01 24566777777775 88888888887776532100 1 34567777778888888
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--h
Q 007613 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (596)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~--~ 421 (596)
++|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 8888888877764322211 1456666777777888888888877665 334321 2334445553 3
Q ss_pred cCCHHHHHHHHHHHHH
Q 007613 422 KDDVEVGLMLLSQAKE 437 (596)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (596)
.+++++|...|+++.+
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 4556677666655543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.7e-08 Score=90.60 Aligned_cols=185 Identities=12% Similarity=0.029 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 007613 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (596)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++...... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45555566666666777777777777766542 122 45566666666677777777777776665421 111 3344
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHH
Q 007613 201 NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (596)
Q Consensus 201 ~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (596)
..+..++.. .|++++|...|+++... .|+. .....+.. +..+... ....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----YPNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH----CTTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----CcCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 555555655 66666666666666543 2221 11111100 0000000 0012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHA----------GKVEAAFEILQEAKNQ 333 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 333 (596)
+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++.+.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3445556666666666666666665543211 123444555555544 5556666666665554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-08 Score=86.96 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
+.+...|.+.|++++|+..|++..+..+. +...+..+...+...|++++|...|+++.+.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 33777888888888888888888776544 67778888888888888888888888888765 45677777777777655
Q ss_pred CC--HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 353 KN--WQKALELYEHMKSIKLKPTVS--TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (596)
Q Consensus 353 g~--~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (596)
|+ ...+...++... .|+.. .+..+..++...|++++|...|++..+ +.|+......
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 53 344555555554 34433 334445556667888888888888876 5677654433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-06 Score=89.79 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCChHhHHHHHHHHHhcCC-hHHHHHHHHH
Q 007613 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQVLRL 117 (596)
Q Consensus 41 ~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 117 (596)
++.|.++|+.+...- |. ++++.+..+|++.. .|++..|...+.-..+.+. .+....+|+.
T Consensus 11 i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666665542 21 44667777776643 3677777777766655553 3445566666
Q ss_pred HHHc-CC-CCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHC
Q 007613 118 VQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 118 m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~ 156 (596)
.... |. +.+...|...+..+. ..++++.+.++|++.+..
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 5543 32 335566666666543 235567777777777763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-07 Score=83.03 Aligned_cols=183 Identities=12% Similarity=0.002 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
|...|++....+ .++..++..+..++...|++++|++++.+....+..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 4455556677777777788888888777776655311 45566677777777888888888887776
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 332 NQGISV-----GIISYSSLMGA--CSN--AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 332 ~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+.. | +..+...|..+ ... .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 3 23444445544 222 23777888888887654 34433333444477777888888888876543
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 403 L-----GL---CP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 403 ~-----g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
. .- .| |..++..++......|+ ++.++++++.+ ..|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 2 00 13 44555455555555666 67778888777 44554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-08 Score=104.76 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=113.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHh
Q 007613 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (596)
Q Consensus 36 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (596)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|+++. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888777 443 5555556666666667777777777777653 3456677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (596)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777777777 77777777654 44566777777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCC
Q 007613 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (596)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 212 (596)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777655 343 4455556666555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-08 Score=85.90 Aligned_cols=160 Identities=11% Similarity=0.152 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CChHhHHHHHHH-H
Q 007613 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSV-C 102 (596)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 102 (596)
...+.....+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.. |+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 334444555666777777777777666555 55555555566666666666666666665532 222222211111 1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 181 (596)
...+...+|...++...+.. +.+...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11112223444454444432 2234445555555555555555555555554432111 123444555555555555555
Q ss_pred HHHHHHH
Q 007613 182 FGAYGIM 188 (596)
Q Consensus 182 ~~~~~~m 188 (596)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=89.95 Aligned_cols=155 Identities=10% Similarity=-0.019 Sum_probs=69.5
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcC
Q 007613 66 RFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLITTCAKSG 141 (596)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g 141 (596)
.+...+...|++++|...|++.. +.+...+..+...+.+.|++++|...++.+... .|+..... .....+.+.+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhc
Confidence 33334444445555555554432 223444444555555555555555555544433 22222111 1112233444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHH
Q 007613 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDRVVFNALITACGQSGAVDRAFDVL 220 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (596)
+.++|.+.+++..... +.+...+..+...|...|++++|+..|+++.+.... .+...+..++..+...|+.++|...+
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 4455555555544432 334445555555555555555555555555543210 01334455555555555555555554
Q ss_pred HHH
Q 007613 221 AEM 223 (596)
Q Consensus 221 ~~~ 223 (596)
++.
T Consensus 279 r~a 281 (287)
T 3qou_A 279 RRQ 281 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-08 Score=82.07 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=104.9
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007613 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (596)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (596)
++.++...|++++|+..|....+. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667788999999988876543 34456678888889999999999999888765 55788888888999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999998888764 44677888888888888888766655 46666542 3356666666565555553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-07 Score=79.62 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEIL 327 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 327 (596)
+|.+.|++..+.+ ++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 45666667777777777777777777776654 44555566666655 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHH
Q 007613 328 QEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLS 398 (596)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 398 (596)
++..+.+ +...+..|...|.. .+++++|...|++..+.+.. .+..++..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776655 45566666666765 67777777777777765411 015666777777766 667777877777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 007613 399 DMKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDG 439 (596)
Q Consensus 399 ~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~~g 439 (596)
+..+. ..+...+..|...|... | +.++|...+++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77664 23344555555555432 2 7778888887777765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.6e-08 Score=103.29 Aligned_cols=170 Identities=12% Similarity=0.025 Sum_probs=86.4
Q ss_pred HHcCChhHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|+..|++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 34455555555555544 222 333445555555555555555555555555544322 44455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007613 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 396 (596)
.|++++|...|+++.+.. +.+...+..+..+|.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555543 2334455555555555566555 55555555432 23445555555566666666666666
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHh
Q 007613 397 LSDMKSLGLCPN-TITYSILLVACER 421 (596)
Q Consensus 397 ~~~m~~~g~~p~-~~t~~~ll~a~~~ 421 (596)
|++..+ +.|+ ...+..+..++..
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHc
Confidence 655544 3344 2334444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-06 Score=78.63 Aligned_cols=169 Identities=8% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH----Hhc---CCHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQVA 179 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 179 (596)
++|+.+++.++..+ +-+..+|+.--.++...+ +++++++.++.+.... +.+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555543 333444555555555555 5555555555555442 23334444433333 223 4445
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC------hh
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ------VD 251 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~ 251 (596)
+++.+++++.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++.+.... ..|...|+.-...+.+.+. ++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 5555555554432 224444444444444444444 4444444444321 1233333333333333332 34
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
++++.++.+...+ +.|..+|+-+-..+.+.|+
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 4444444444443 3344444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-07 Score=79.69 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 186 (596)
|++.|+...+.| +...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555443 45555556666666666666666666665543 44555555555555 4 5666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHH----cCChhHHHH
Q 007613 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (596)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~a~~ 255 (596)
+..+.| +...+..|...|.. .+++++|.+.|.+.... .++ ...+..|...|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 665544 44555555555555 55666666666665532 221 3455555555555 555666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 007613 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (596)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 299 (596)
.|++..+. +.+...+..|...|... | ++++|...|++..+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665554 12233445555555432 2 5566666665555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-07 Score=87.81 Aligned_cols=167 Identities=10% Similarity=0.005 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (596)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (596)
+.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555666666667777777777777766553 335566666777777777777777777766554 3443322222
Q ss_pred -HHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHh
Q 007613 204 -ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQ 281 (596)
Q Consensus 204 -i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 281 (596)
...+...++.++|...+++.... -+.+...+..+...+...|++++|...|..+.+.+... +...+..++..|..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 22345556666666666666543 12345566666677777777777777777776654211 14567777777777
Q ss_pred cCCHHHHHHHHHHHH
Q 007613 282 TGDWEFACSVYDDMT 296 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~ 296 (596)
.|+.++|...|++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777777776666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.9e-08 Score=82.91 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~ 316 (596)
..+...+.+.|++++|...|++..+.+ +.+...+..+...+...|++++|+..|++...... +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344555666777777777777665554 44566677777777777777777777776655432 33222221111 112
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHH
Q 007613 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
.+....|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122233566666666553 3356666667777777777777777777776543221 24466666777777777777777
Q ss_pred HHHHHH
Q 007613 396 VLSDMK 401 (596)
Q Consensus 396 ~~~~m~ 401 (596)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-07 Score=80.37 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445556667777888888888888877652 32 346667777788888888888888887765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=83.38 Aligned_cols=54 Identities=17% Similarity=-0.027 Sum_probs=20.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
..|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 33333334444443333333332 2233333334444444444444444444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=79.70 Aligned_cols=204 Identities=10% Similarity=-0.020 Sum_probs=116.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCH-HHH
Q 007613 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITI 237 (596)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 237 (596)
+...+..+...+.+.|++++|+..|+++...... |. ...+..+..++.+.|++++|...|+++.... +-.+.. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445566667778888888888888888765211 11 3466677788888888888888888877642 111221 133
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007613 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (596)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (596)
..+..++.+.+.. .+ ..|..+...+...|++++|+..|+++.+..+. +...+......
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l---- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----
Confidence 3333444332210 00 11223334445567888888888888776432 22222111110
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHH
Q 007613 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT----VSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A 393 (596)
+ .+...+ ......+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|
T Consensus 140 ~------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 V------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp H------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred H------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0 000000 0112345667888888888888888887642 33 24577788888888888888
Q ss_pred HHHHHHHHhC
Q 007613 394 MEVLSDMKSL 403 (596)
Q Consensus 394 ~~~~~~m~~~ 403 (596)
.+.++.+...
T Consensus 204 ~~~~~~l~~~ 213 (225)
T 2yhc_A 204 EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 8888887764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-07 Score=96.09 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007613 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (596)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (596)
.|++++|.+.+++.... -+.+...+..+...+.+.|++++|.+.|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35667777777776543 12235566666777777777777777777777654 445667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007613 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (596)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (596)
+.|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 777776665433 45666667777777777777777777766654 34456666677777777 77777777777766
Q ss_pred hCC
Q 007613 367 SIK 369 (596)
Q Consensus 367 ~~~ 369 (596)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7e-07 Score=93.54 Aligned_cols=153 Identities=10% Similarity=-0.093 Sum_probs=93.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (596)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (596)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356777777777776654 445677777777777777777777777777765433 566677777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHhC
Q 007613 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSL 403 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 403 (596)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77776654 4456667777777777777777777777766543 23456666677777777 7777777777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-06 Score=76.79 Aligned_cols=125 Identities=15% Similarity=0.008 Sum_probs=103.4
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007613 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (596)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (596)
.++..+...|++++|+..|++..+++...|..+...+.+.|++++|...++...+.. +.+...+..+..+|...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 445556667888999999998888888889999999999999999999999988765 5577888889999999999999
Q ss_pred HHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 146 MFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
|.+.|++..+.. +.+ ...+..+...|.+.|++++|...|++..+..
T Consensus 90 A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 90 AIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999988753 222 2678888888999999999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-05 Score=76.61 Aligned_cols=189 Identities=8% Similarity=0.049 Sum_probs=125.2
Q ss_pred CCcccChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH-HHHHHHHHHhhCC---CCChH
Q 007613 19 ANYAHDVSEQLHSYNRLIR-QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP---NPTLS 93 (596)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~ 93 (596)
..|..+...-...+..+++ .+..++|++++++++..+ |.+..+...-..++...+ .+++++.+++.+. +.+..
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~ 124 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ 124 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH
Confidence 3444444444444455554 445578999999999888 666655554444555555 4778888877653 45667
Q ss_pred hHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHh
Q 007613 94 TFNMLMSVCASS-K-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 94 ~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~ 163 (596)
+|+.....+.+. + ++++++.+++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++++.. +.|..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHH
Confidence 788777776666 6 7788888888887664 556777776666666666665 7778888777764 55777
Q ss_pred hHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 164 TYGALIDGCAKAGQ-------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 164 ~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
+|+.....+.+.++ ++++++.+++..... +-|...|+-+-..+.+.|+
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 78777777776665 677777777777653 4466677665555555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-07 Score=85.77 Aligned_cols=229 Identities=12% Similarity=-0.013 Sum_probs=142.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
..|++++|.+++++..+... .. ++...+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 46788889998888776431 10 01112456666666543 3456677788888888877
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP--NVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
+..+... .+ -..+|+.+..+|.+.|++++|+..|++..+. | .+ -..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7654311 11 1346777888888888888888888776542 2 11 13567777778877 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHH
Q 007613 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (596)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~ 257 (596)
++.... +-.+ ...+++.+...+.+.|++++|...|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876643 1100 135677778888888888888888887764211 11122 235666667777778888888888
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 007613 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (596)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~ 291 (596)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8877 4211 11 12344555555 56776666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=8.4e-05 Score=75.67 Aligned_cols=354 Identities=8% Similarity=-0.025 Sum_probs=193.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH-HHHHHHHHHhhCC------CCChHhHHHHHHHHH----hc
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP------NPTLSTFNMLMSVCA----SS 105 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~------~~~~~~~~~li~~~~----~~ 105 (596)
-.|.++.+.++|++....- | +..++...+....+.+ ..+....+|+... ..+...|...+..+. ..
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 4 4434444444444333 2233445555421 346678888887654 24
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (596)
++.+.+..+|++.... ++. ...|......-. ......+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFEL-ELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHH-HhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 6788899999999873 322 122222222111 111222222222211 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007613 184 AYGIMRSKNVKPDRVVFNALITACGQSG--A-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (596)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (596)
+++++...--..+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222221000012234444333322110 0 23455666666642 233355666666666677777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007613 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (596)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (596)
|++.... +.+...|..... ....++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y~~----~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYGL----VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHHH----HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHHh----hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777666 334333332221 1111111 1221110 0001 1245666666666778899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007613 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (596)
.+|..+ +.. ..+..+|......-...+ +.+.|..+|+...+.. +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234445543333333334 6899999999887642 2345567777777788899999999999873
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
.....|...+.--...|+.+.+..++++..+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999998988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-05 Score=72.69 Aligned_cols=181 Identities=6% Similarity=-0.027 Sum_probs=107.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 33333444555567888888877764 445666777666666677 4778888887777664 45666777766666665
Q ss_pred -C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 176 -G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 176 -g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
+ ++++++..++++.+.. +-|-.+|+.-.-.+.+.|.++ ++++.++++... -..|...|+.....+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRV 212 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 5 6777777777777654 345666665444444444443 566666666543 1234555555555555
Q ss_pred HcCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 246 NAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 246 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
+.++ ++++++.+++..... +.|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5544 455566665555554 4455566555544444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=84.06 Aligned_cols=199 Identities=13% Similarity=0.038 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007613 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (596)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 466777777777665431 110 0 11135666666666543 34566777777777
Q ss_pred HHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007613 255 EVYKMIHKYNIK---G--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPD--EVFLSALIDFAGHAGKVEAAF 324 (596)
Q Consensus 255 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~a~ 324 (596)
..|.+..+.... + ...+|+.+...|.+.|++++|+..|++..+.- -.+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777766543110 0 13456677777777777777777777654321 0111 2345556666666 7777777
Q ss_pred HHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007613 325 EILQEAKNQGIS-----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 325 ~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (596)
..+++..+.... ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777666543110 01345666667777777777777777766542 11111 124555555666667777777
Q ss_pred HHHHHHH
Q 007613 395 EVLSDMK 401 (596)
Q Consensus 395 ~~~~~m~ 401 (596)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-06 Score=67.66 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=62.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3456666666666777777777776666543 3455666666666666677777777766666543 3455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007613 172 CAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (596)
|.+.|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-05 Score=72.35 Aligned_cols=125 Identities=12% Similarity=-0.018 Sum_probs=65.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (596)
.+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|...|++..+.+ +.+..+|..+...|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34444455555555555554432 2344455555555555555555555555555543 3345555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 282 TGDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
.|++++|+..|++..+.... | ....+..+..++...|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666655555543221 0 1134455555555556666666655555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-06 Score=70.62 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..|..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666667777788888888887777654 4456777777777777777888877777777653 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 223 (596)
.+.|++++|...|++..... +.+...+.. +...+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776552 223344432 233355667777776666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.9e-06 Score=67.38 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=66.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..+......+.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345566666777777777777777776654 4456677777777777777777777777766654 44566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007613 173 AKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (596)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-05 Score=75.09 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
+++.+...|...|++++|+..|++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555544444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=74.41 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC-H
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-T 409 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~ 409 (596)
+++.+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|+..+++..+ .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 345555555555555555555554442 1 11111 22455555555566666666555555432 111222 3
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 007613 410 ITYSILLVACERKDD-VEVGLMLLSQAK 436 (596)
Q Consensus 410 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~ 436 (596)
.+|..+..++.+.|+ +++|.+.+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 455555666666663 466666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.4e-06 Score=69.39 Aligned_cols=93 Identities=12% Similarity=-0.037 Sum_probs=42.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
.+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhc
Confidence 33444444455555555554444433 233444444444445555555555555444443221 3334444444444444
Q ss_pred CHHHHHHHHHHHHHC
Q 007613 319 KVEAAFEILQEAKNQ 333 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~ 333 (596)
++++|...++++.+.
T Consensus 96 ~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 96 KFRAALRDYETVVKV 110 (166)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-05 Score=71.05 Aligned_cols=184 Identities=8% Similarity=0.031 Sum_probs=123.3
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHhhCC---CCChHhHHHHHHHH
Q 007613 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (596)
Q Consensus 37 ~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (596)
+.|.++ +|+++++.+...+ |.+..+...-..+....+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566655 7899999999887 6555554433333333332 567777777653 55777888877777
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----
Q 007613 103 ASSKD--SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (596)
Q Consensus 103 ~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (596)
.+.++ +++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++.+++.. +.|..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 77774 788888888888775 5677788877777777777 478888888888765 55777787776666554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHhh
Q 007613 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (596)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~ 225 (596)
+.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.++++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677777777777653 44666676444444333 235566666666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-06 Score=66.69 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=5.9
Q ss_pred HHhcCCHHHHHHHHHH
Q 007613 279 CSQTGDWEFACSVYDD 294 (596)
Q Consensus 279 ~~~~g~~~~a~~~~~~ 294 (596)
|.+.|++++|++.|++
T Consensus 23 ~~~~g~~~~A~~~~~~ 38 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNE 38 (126)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3333333333333333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=64.82 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (596)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.... +..++..+...+...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhc
Confidence 33333444444444444444443332 223333444444444444444444444443332211 2333333333344444
Q ss_pred CHHHHHHHHHHHH
Q 007613 319 KVEAAFEILQEAK 331 (596)
Q Consensus 319 ~~~~a~~~~~~~~ 331 (596)
++++|...++.+.
T Consensus 92 ~~~~A~~~~~~~~ 104 (125)
T 1na0_A 92 DYDEAIEYYQKAL 104 (125)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=72.50 Aligned_cols=99 Identities=7% Similarity=-0.036 Sum_probs=73.3
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44466666777777888888888888777764 4567777777778888888888888888777664 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007613 171 GCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (596)
+|.+.|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.5e-07 Score=83.88 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=58.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666666543 3355566666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007613 172 CAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (596)
|...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-05 Score=72.08 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=117.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 007613 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (596)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------- 161 (596)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888887764 4456677766 3455555445555444444332 1221
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-
Q 007613 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (596)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 233 (596)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 1223445666777888888888887777653 44335555556777788888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2245666777778888888888888776443213 23456666777777788888888888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=7e-06 Score=66.47 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=69.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555666666666777776666666543 3355566666666666666666666666666542 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
|.+.|++++|...|++..... +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 2244455555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=82.37 Aligned_cols=95 Identities=14% Similarity=-0.070 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (596)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..+++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444455555555555555555555543 334555555555555555555555555555544322 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007613 316 HAGKVEAAFEILQEAKN 332 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~ 332 (596)
..|++++|...|....+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-05 Score=74.35 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--HH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS---VG--II 340 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 340 (596)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+....+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777788888888888777665332111 12333445566778888888888887754211 11 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-H
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 409 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 409 (596)
+++.+...|...|++++|...|++..+ . +..+ ...+++.+...|.+.|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888889999999988888762 1 1111 1257788888899999999999998886542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 007613 410 ITYSILLVACERKDDVEVG-LMLLSQAKE 437 (596)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a-~~~~~~~~~ 437 (596)
.+|..+...+...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888889999999999 777777653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.5e-06 Score=74.67 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=134.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHh------------CCCC----C
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTK------------KGVI----P 302 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~------------~~~~----p 302 (596)
..++...|.+.|.++...+ +.....|..+ ...+...++..+++..+..-.. .|.- .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888888777776 5566777766 4455555555555444444333 1110 0
Q ss_pred ---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 007613 303 ---D-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VST 376 (596)
Q Consensus 303 ---~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~ 376 (596)
+ ..........+...|++++|.++|..+...+ |+......+...+.+.|++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0 1223345567778899999999998777654 333355566668889999999999998665421 111 235
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007613 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (596)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (596)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.+|-+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhC
Confidence 67788889999999999999999875433254 335566677889999999999999999984 466555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-05 Score=71.54 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CCC--
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-- 233 (596)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+........ .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667778888888888888877665321 11 123334455667778888888887776431111 111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIP- 302 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p- 302 (596)
..+++.+...|...|++++|...|++..+. ..+.+ ..+++.+...|.+.|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 336666777777777777777777766521 01111 1456666666777777777777766654321 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007613 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (596)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (596)
-..++..+...|...|++++| ...++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134455555566666666666 4444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-06 Score=72.56 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 007613 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (596)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777888887777664 4567778888888888888888888888877653 3466777777777 7788888 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007613 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (596)
|...|++..+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999988887742 234667778888888899999999999988874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-06 Score=67.17 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
+...|..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666666777777777777777766543 3356666666666777777777777777666543 335566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (596)
.|.+.|++++|.+.|++..... +.+...+..+..++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 6777777777777776665542 1123344444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=65.59 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...|...|++++|++.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3444445555555555555555555555443 334455555555555555555555555555543322 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007613 314 AGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~ 333 (596)
+...|++++|...+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=65.48 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007613 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (596)
..+...+...|++++|...|++....... +...+..+...+...|++++|...+....+.. +.+...+..+...|.+.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 33333344444444444444443332211 23333333333334444444444443333322 22233333333344444
Q ss_pred CCHHHHHHHHHHHH
Q 007613 353 KNWQKALELYEHMK 366 (596)
Q Consensus 353 g~~~~A~~~~~~m~ 366 (596)
|++++|...|++..
T Consensus 94 ~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 94 NKHVEAVAYYKKAL 107 (131)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00021 Score=67.72 Aligned_cols=186 Identities=13% Similarity=0.032 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 007613 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEI 326 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~ 326 (596)
+++++.+++.+...+ +.+..+|+.-.-.+.+.+ .+++++.+++.+.+.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 455566666665554 445566665555555555 366666666666665544 55566655555556665 4666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----
Q 007613 327 LQEAKNQGISVGIISYSSLMGACSNA--------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----- 387 (596)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 387 (596)
+..+.+.. +-|...|+.....+.+. +.++++.+.+....... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66666654 44555555554444443 44677788887777654 45677787665555554
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHHHHHH--H---HHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 388 ------DQLPKTMEVLSDMKSLGLCPNTITYSI--L---LVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 388 ------g~~~~A~~~~~~m~~~g~~p~~~t~~~--l---l~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
+.++++++.++++.+ ..||. .|.. + ..+....|..++....+.++++ ++|..
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 456788888888887 45664 2332 1 1222245666777777777776 45544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-06 Score=73.45 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 413 SILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
..+...+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444555555555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.4e-06 Score=71.27 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=65.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKV--EA 322 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 322 (596)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655544 445556666666666666666666666665554322 44455555555 4555665 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (596)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (596)
|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666655543 334455555555666666666666666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-06 Score=69.32 Aligned_cols=26 Identities=4% Similarity=-0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|..+..++...|++++|...|++.++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333344444444444443333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=74.62 Aligned_cols=132 Identities=16% Similarity=0.017 Sum_probs=60.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE--P 160 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~ 160 (596)
..++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344455555555555555555555554431 111 12334555555555556666665555554432 101 1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
...++..+...+...|++++|...+++.... +... -..++..+...+...|++++|.+.+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1233445555555555555555555554321 1000 0112334444455555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=70.33 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=7.6
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 007613 276 INCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m 295 (596)
...+.+.|++++|+..|++.
T Consensus 28 g~~~~~~g~~~~A~~~~~~a 47 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQAL 47 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 33333333333333333333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-05 Score=60.42 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=63.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445566666667777777777777766553 3456666666667777777777777777666553 3345666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007613 172 CAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (596)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=71.58 Aligned_cols=97 Identities=9% Similarity=-0.066 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (596)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445555566666666666666666665543 3355666666666666666666666666665531 2234555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~ 437 (596)
+...|++++|...|++.++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-05 Score=74.93 Aligned_cols=94 Identities=13% Similarity=-0.027 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.+|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|...|+++.+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45556666666666666666666666554332 45555556666666666666666666665543 33455555566666
Q ss_pred HhcCCHHHH-HHHHHHH
Q 007613 350 SNAKNWQKA-LELYEHM 365 (596)
Q Consensus 350 ~~~g~~~~A-~~~~~~m 365 (596)
.+.|+.++| ...|+.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666555 3344443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=76.20 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
...+..+...|.+.|++++|+..|++..+....... -..+.+..+- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH--------HHHHHHHHHHHHH
Confidence 456667777777777777777777776654322110 0001110000 0013456666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (596)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766543 345666777777777777777777777776653 33 45566666667777777776
Q ss_pred H-HHHHHHHH
Q 007613 428 G-LMLLSQAK 436 (596)
Q Consensus 428 a-~~~~~~~~ 436 (596)
+ ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 44555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-05 Score=62.87 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566666777777777777777776654 4456677777777777777777777777766653 34566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007613 173 AKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (596)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-05 Score=62.65 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (596)
..+..+..+|.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 333333333333444444444333333321 12233333333333334444444433333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=64.43 Aligned_cols=104 Identities=11% Similarity=0.172 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 414 (596)
.+..+...+.+.|++++|...|++..+.. +.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666677777777776666543 3345666666666777777777777666655421 1111 134556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007613 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (596)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 447 (596)
+..++...|++++|++.|++.++ ..|+..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66667777777777777777766 34554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-05 Score=59.12 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...|++..
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333344444444443333332 1223333334444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=62.57 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HhhHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPN----VHTYG 166 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~ 166 (596)
..+..+...+.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777788888888887777654 4456777777777778888888887777766532 0111 23556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (596)
.+...+...|++++|++.|++.... .||....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6666677777777777777776654 3454433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=61.12 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=48.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALI 169 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li 169 (596)
...|..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344445555555555555555555555443 2344445555555555555555555555554432 22 344445555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 007613 170 DGCAKA-GQVAKAFGAYGIMRSK 191 (596)
Q Consensus 170 ~~~~~~-g~~~~A~~~~~~m~~~ 191 (596)
..+.+. |++++|.+.|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-06 Score=74.16 Aligned_cols=96 Identities=9% Similarity=-0.130 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD--------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (596)
..+..+...+...|++++|+..|++..+.... |+ ...+..+..++...|++++|+..+....+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44556666667777777777777776654221 10 1333444444444444444444444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
+.+...+..+..+|...|++++|...|++..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2233444444444444444444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=64.65 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344455556666777777777777766654 4456666667777777777777777777766653 34555666666777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007613 173 AKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (596)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=63.13 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HhhHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (596)
..|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777778888888777777654 44666777777777777778777777777665420 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (596)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (596)
.+...|.+.|++++|...|++.... .|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 7777777777777777777777664 34544444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.9e-05 Score=63.51 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (596)
+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334445555566666666665555544 344555555555566666666666666655554332 34445555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007613 317 AGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (596)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666655555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.2e-05 Score=61.18 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=59.2
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (596)
.+...|..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345556666666666666666666666665543 3345566666666666666666666666665543 33455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007613 170 DGCAKAGQVAKAFGAYGIMRS 190 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (596)
..|...|++++|+..|++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-05 Score=59.64 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007613 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILL 416 (596)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll 416 (596)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|+..|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555566666666666666666665543 2345566666666666666666666666665531 12 355566666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 007613 417 VACERK-DDVEVGLMLLSQAKED 438 (596)
Q Consensus 417 ~a~~~~-g~~~~a~~~~~~~~~~ 438 (596)
..+... |++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.5e-05 Score=63.13 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007613 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (596)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (596)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567778888888999999999998888754 3467888888899999999999999999988742 234777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 007613 418 ACERKDDVEVGLMLLSQAKED 438 (596)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~ 438 (596)
++...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998874
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-05 Score=76.45 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcC
Q 007613 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (596)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (596)
..+.-...+++.|++++|++.|.++.+......+.... ........+..++ ++..+...|...|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~--------------al~~l~~~y~~~~ 69 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG--ASVDDKRRNEQET--------------SILELGQLYVTMG 69 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS--SSBCSHHHHHHHH--------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH--HHHHHHHhhhHHH--------------HHHHHHHHHHHCC
Confidence 34556778899999999999999998875321111000 0000011111222 3466778888888
Q ss_pred ChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHhcC
Q 007613 107 DSEGAFQVLRLVQEAG-LKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKAG 176 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g 176 (596)
++++|.+.+..+.+.- ..++. .+.+.+-..+...|+.+.|.+++..... .+..+. ..++..|...|...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 8888888887765421 01111 1222233333345666677666665543 111111 334555556666666
Q ss_pred CHHHHHHHHHHHHhC--C--CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 177 QVAKAFGAYGIMRSK--N--VKP-DRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~--g--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
++++|..++++.... + -.+ ...++..++..|...|++++|..+++..
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 666666665554321 0 011 1223444444444444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.2e-05 Score=60.52 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (596)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (596)
...+..+...+...|++++|...|+.....+ +.+...|..+...+...|++++|...|++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3444444445555555555555555544443 334444555555555555555555555554443322 34444444555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007613 314 AGHAGKVEAAFEILQEAKN 332 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (596)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=62.21 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+..+..++...|++++|.+.++++.+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333344444444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-05 Score=65.75 Aligned_cols=94 Identities=17% Similarity=0.002 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
.+|..+..+|.+.|++++|+..+++..+.... +...+..+..++...|++++|...|+...+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 55666667777777777777777776665332 55666667777777777777777777776654 33455666666666
Q ss_pred HhcCCHHHHH-HHHHHH
Q 007613 350 SNAKNWQKAL-ELYEHM 365 (596)
Q Consensus 350 ~~~g~~~~A~-~~~~~m 365 (596)
...++.+++. ..|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6666555554 334433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00018 Score=59.48 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=73.9
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (596)
.+...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|.+.+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566777777888888888888888887765 344 5667777777888888888888888777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
..+..+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777888888888888888877765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5e-05 Score=60.82 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (596)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445556667777777777777776654 4456667777777777777777777777766653 3355666677777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007613 175 AGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (596)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.1e-05 Score=63.65 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=65.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 007613 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (596)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (596)
...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766654 3456666777777777777777777777766653 3346666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007613 172 CAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (596)
|.+.|++++|+..|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777766654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00023 Score=58.87 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007613 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (596)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (596)
..+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...++...+.. +.+...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 33444444444444444444444444421 233 2333444444444444444444444444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 274 IAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
.+...|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=58.81 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=33.5
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (596)
+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444332 233334444444444444444444444443333221 233333333334444444444
Q ss_pred HHHHHHH
Q 007613 324 FEILQEA 330 (596)
Q Consensus 324 ~~~~~~~ 330 (596)
...++..
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0005 Score=68.83 Aligned_cols=161 Identities=9% Similarity=-0.092 Sum_probs=75.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKAD----------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNV 162 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 162 (596)
+.+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345567788888888887776432111 1134556666666677776666666554310 01111
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCC-
Q 007613 163 ----HTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP- 232 (596)
Q Consensus 163 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 232 (596)
.+.+.+-..+...|+.+.|..++.+... .+..+. ..++..+...+...|++++|..++.+......+...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222233334556666555554432 111111 234444555555555555555555544322111111
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007613 233 --DHITIGALMKACANAGQVDRAREVYKMI 260 (596)
Q Consensus 233 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (596)
...++..++..|...|++++|..++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1223344444444444444444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00012 Score=74.29 Aligned_cols=115 Identities=12% Similarity=-0.021 Sum_probs=50.6
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445555544444443 333444555555555555555555555555444322 34444445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007613 326 ILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (596)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (596)
.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555544432 1122233333333 444455555555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=73.62 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 007613 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (596)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (596)
..+.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556778888888888877763 4457778888888888888888888888877764 445677778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 007613 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (596)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 221 (596)
+|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877652 2233444444444 667778888887776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00043 Score=55.66 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=54.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHH
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (596)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4445556667777777776666543 2222 355556666666667777766666666542 222 4455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007613 172 CAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (596)
|.+.|++++|...|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=60.80 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 410 (596)
++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 455556666666666666666665543100 011 335566666777777777777777765432 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888887764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00087 Score=53.80 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~ 296 (596)
+..+...+.+.|++++|...|++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333334444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=61.73 Aligned_cols=97 Identities=18% Similarity=0.031 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVS 375 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~ 375 (596)
++..+...+...|++++|...++...+.. .+ ....++..+...+...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444445555555555555555443321 00 01334555566666666666666666655431 1000 123
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666777777777777766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00026 Score=59.91 Aligned_cols=63 Identities=10% Similarity=-0.100 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3445555555555555555555555554421 22344555555555566666666666655555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00039 Score=70.16 Aligned_cols=121 Identities=7% Similarity=-0.038 Sum_probs=62.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
..|..+...+.+.|++++|...|++..+.. +.+ ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 355666666777777777777777766542 112 3445555555555555555555555555443
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007613 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (596)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 216 (596)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555555432 11233444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00034 Score=59.16 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=62.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (596)
..+......+.+.|++++|+..|....+. .- +.+...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34666677778888888888888877654 00 11234566666666666666666666666665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 344566666666666666666666666666654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00048 Score=69.52 Aligned_cols=87 Identities=9% Similarity=-0.066 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
.|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...+..+...+.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444433 2234444444444555555555555555444432 122334444444444
Q ss_pred cCCChhHHH
Q 007613 386 DGDQLPKTM 394 (596)
Q Consensus 386 ~~g~~~~A~ 394 (596)
+.++.++|.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00039 Score=67.90 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHKYN---------------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (596)
+..+...+.+.|++++|...|++..+.. -+.+..+|..+..+|.+.|++++|+..+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444455555566666666555554410 0112345555555566666666666666665554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (596)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (596)
+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666665555543 22344444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.1e-05 Score=59.09 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 248 GQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (596)
|++++|+..|++..+.+ -+.+..++..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444332 1122333444444444444444444444444443322 23344444444444444444444
Q ss_pred HHHHHHH
Q 007613 326 ILQEAKN 332 (596)
Q Consensus 326 ~~~~~~~ 332 (596)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00036 Score=68.12 Aligned_cols=88 Identities=9% Similarity=-0.050 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 007613 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll 241 (596)
..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3445555555555555555555555555442 2234455555555555555555555555554321 11333444444
Q ss_pred HHHHHcCChhHH
Q 007613 242 KACANAGQVDRA 253 (596)
Q Consensus 242 ~~~~~~g~~~~a 253 (596)
..+.+.++.+++
T Consensus 349 ~~~~~~~~~~~a 360 (370)
T 1ihg_A 349 KVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0047 Score=63.85 Aligned_cols=130 Identities=7% Similarity=-0.006 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHhhCC---CCChHhHHHHHHHHHhcC
Q 007613 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (596)
Q Consensus 40 ~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 106 (596)
.-++|++.++++.+.+ |....++..-..+....++ +++++..++.+. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 4456688888877776 5554444433333333333 444555444432 234444544444444444
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 107 --DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 107 --~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
+++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.++++++.. +.|..+|+.....+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHH
Confidence 3355555555554443 334444444444444444 4444444444444432 234444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=58.56 Aligned_cols=86 Identities=12% Similarity=-0.073 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007613 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (596)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (596)
.|++++|+..|++..+.+ -+.+...+..+..+|.+.|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666665542 12234455566666666666666666666666543 334555666666666666666666
Q ss_pred HHHHHHHhC
Q 007613 183 GAYGIMRSK 191 (596)
Q Consensus 183 ~~~~~m~~~ 191 (596)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00026 Score=68.27 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..+..+...+.+.|++++|+..|++..... |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345666677777778888887777766542 33221 112233333322221 13566677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCHHH
Q 007613 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEV 427 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~ 427 (596)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+ +.|+.. .+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776543 34566777777777777777777777777665 344433 23333322 223455666
Q ss_pred HHHHHHHHHH
Q 007613 428 GLMLLSQAKE 437 (596)
Q Consensus 428 a~~~~~~~~~ 437 (596)
+...|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00033 Score=67.57 Aligned_cols=146 Identities=17% Similarity=0.081 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (596)
.+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 4555666677778888888888877654 233221 11112222221111 0 124556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH-HHHcCChh
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQVD 251 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ll~~-~~~~g~~~ 251 (596)
+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665542 234556666666666666666666666665532 232 2233333333 22334455
Q ss_pred HHHHHHHHHHhc
Q 007613 252 RAREVYKMIHKY 263 (596)
Q Consensus 252 ~a~~~~~~~~~~ 263 (596)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 566666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0013 Score=54.51 Aligned_cols=94 Identities=11% Similarity=-0.047 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-------
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKA------DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA------- 156 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 156 (596)
+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4455556667777888888777776643210 12 25555566666666666666666555543
Q ss_pred CCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 157 GIEPNVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 157 g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
. +-+...| .....++...|++++|+..|++..
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1223344 445555555555555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0076 Score=62.27 Aligned_cols=171 Identities=6% Similarity=-0.054 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
..++|++.++.+.+.+ +-+..+|+.--.++.+.|+ ++++++.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456777777777664 3455666666666666555 777777777777654 456677777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc------
Q 007613 177 --QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA------ 247 (596)
Q Consensus 177 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------ 247 (596)
+++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+. -..|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcccccc
Confidence 6677777777777664 346667776666666666 677777777776643 133455665555555442
Q ss_pred --------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007613 248 --------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (596)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (596)
+.++++.+.++.....+ +.+..+|+-+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33566666666666655 4556666666666655555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0038 Score=50.96 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHh
Q 007613 352 AKNWQKALELYEHMKS 367 (596)
Q Consensus 352 ~g~~~~A~~~~~~m~~ 367 (596)
.++.++|.+.|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0046 Score=50.48 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 324 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 324 (596)
++++|.+.|++..+.+ .+... +...|...+.+++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22222 5555556666666777777666654 45556666666665 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007613 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 369 (596)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (596)
..|++..+.| ++..+..|..+|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777665 45566666666766 667777777777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0019 Score=53.53 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
+......+.+.|++++|+..|++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 444455556666666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00017 Score=56.28 Aligned_cols=63 Identities=8% Similarity=-0.051 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
..|..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|++.|++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555555556666666666666655543 334555555555666666666666666655544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00052 Score=56.74 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007613 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCPN-TITYSILLVAC 419 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 419 (596)
+.+.+++|.+.++...+.. +.+...|+.+..++.+.++ +++|+..|++..+ +.|+ ..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 3444555555555555443 3345555555555555544 3477777777766 3454 45677777777
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 420 ERK-----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 420 ~~~-----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
... |++++|.+.|++.++ +.|+...|...+.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 665 488999999999888 67887777666655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0023 Score=47.37 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
.|..+...+...|++++|...++...+.. +.+..++..+..++.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44444455555555555555555555432 2344445555555555555555555555554432 22333444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0017 Score=50.91 Aligned_cols=77 Identities=8% Similarity=-0.090 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (596)
+...|+...+.+ +.+...+..+...|...|++++|+..|++..+.... +...+..+..++...|++++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444443332 333444444444444444444444444444443221 33344444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=66.30 Aligned_cols=124 Identities=9% Similarity=-0.005 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 007613 314 AGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNA 379 (596)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 379 (596)
+...|++++|..++++..+. | .+....+++.|..+|...|++++|..++++..+ .|. -|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766542 1 111245677777788888888888877776653 221 122 346777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 380 LITALCDGDQLPKTMEVLSDMKS-----LGL-CPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|...|...|++++|+.++++..+ .|- .|+. .+...+-.++...+.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888877777542 121 1222 2334444555667777777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00043 Score=53.89 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 22334444444444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0021 Score=50.36 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
|+..|+...+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444332 2344455555555555555555555555554432 2234445555555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=65.24 Aligned_cols=62 Identities=5% Similarity=-0.110 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007613 341 SYSSLMGACSNAKNWQKALELYEHMKS-----IKLK-PT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (596)
+++.|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+++++++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444432 1210 11 12233344444455555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0014 Score=54.13 Aligned_cols=92 Identities=10% Similarity=-0.005 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--
Q 007613 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-- 175 (596)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 175 (596)
+++|...++...+.. +.+...|+.+..++...++ +++|+..|++.++.. +.+..+|..+..+|...
T Consensus 18 feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcc
Confidence 444444444444432 2334444444444444333 335666666555543 23445555566655554
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007613 176 ---------GQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (596)
Q Consensus 176 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (596)
|++++|++.|++..+. .|+...|...
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3566666666666654 4554444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0053 Score=45.36 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
.+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444332 22333444444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0075 Score=45.82 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
..+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444332 222333444444444444444444444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.065 Score=50.97 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007613 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (596)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (596)
+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677888888777777899999999999988874 78777878888888899999999999888876 56666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0079 Score=45.69 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=55.5
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (596)
.+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466778888889999999999999999998875 44677888899999999999999999988764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.037 Score=52.65 Aligned_cols=73 Identities=10% Similarity=-0.033 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007613 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 447 (596)
+.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 345666666655555567777777777776664 36666666666666677777777777777666 44555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.045 Score=44.63 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 007613 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (596)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (596)
.+..+++-|.+..+.+ .++..+...+..++++++ +.++++.+|++..+.+ .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4456777777776665 478888888888999988 6669999999988753 35 244555666788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
++.++.+++ ++|+..-...|...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999998 67876655555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.2 Score=54.40 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 007613 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (596)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (596)
..++..+.+.|..++|.++.+.-. .-.......|+++.|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 556666666676666665542111 1123345567777777664433 2456777777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007613 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (596)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 290 (596)
++++.|.++|..+.. +..+...|...|+.+...++-+.....|. ++....+|.+.|++++|++
T Consensus 695 ~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp TCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 777777777776531 33444455556666555555444444331 2333344555555555555
Q ss_pred HHHH
Q 007613 291 VYDD 294 (596)
Q Consensus 291 ~~~~ 294 (596)
++.+
T Consensus 758 ~~~~ 761 (814)
T 3mkq_A 758 LLIK 761 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.093 Score=57.05 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
..++..+.+.|..+.|+++.+. .. .-...+...|++++|.++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555556666666666655421 10 1123345667777777665332 3566777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 007613 176 GQVAKAFGAYGIMR 189 (596)
Q Consensus 176 g~~~~A~~~~~~m~ 189 (596)
++++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777777664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=42.78 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
.+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555442 23344 5555555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.024 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 340 ISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.+++.|..+|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 345555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.028 Score=55.64 Aligned_cols=62 Identities=8% Similarity=-0.103 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 007613 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITACGQSGAVDRAFDVLAEMN 224 (596)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (596)
.+++.|...|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555544321 1 1122 2345555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.048 Score=53.98 Aligned_cols=61 Identities=8% Similarity=-0.065 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 376 TMNALITALCDGDQLPKTMEVLSDMKS-----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
+++.+...|...|++++|+.++++... .| -.|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444455555555555555555544332 11 1122 2345555566666666666666665554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.1 Score=38.75 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 126 DCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 126 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
|...+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 455555555555443 334444555555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.075 Score=52.60 Aligned_cols=90 Identities=9% Similarity=-0.075 Sum_probs=40.9
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCC-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----C--CCCCHHHHH
Q 007613 206 ACGQSGAVDRAFDVLAEMNAEVHP-VDPD----HITIGALMKACANAGQVDRAREVYKMIHKY-----N--IKGTPEVYT 273 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 273 (596)
.+.+.|++++|..++++....... +.|+ ..+++.+...|...|++++|+.+++++... | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344455666666666655432111 1122 234455555555555555555555544321 1 011122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007613 274 IAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m 295 (596)
.|...|...|++++|+.++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4445555555555555544443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.13 Score=38.11 Aligned_cols=68 Identities=4% Similarity=-0.006 Sum_probs=53.4
Q ss_pred CCChHhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007613 89 NPTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (596)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (596)
+.|...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466667777777654444 689999999988875 5577888888889999999999999999998763
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.99 Score=37.73 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
.+.|+++.|.++.+++. +...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHH
Confidence 45566666666555441 455666666666666666666666655431 3334444555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007613 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (596)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (596)
-.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444444331 34444445555666666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.14 Score=38.23 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 242 KACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
..+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555566666666666665554 33445 56666666666666666666666665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=1.6 Score=39.73 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 007613 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (596)
...|...+++..+ +.|+ -..|..+...|.+. |+.++|.+.|++..+.+...+..++......++.. |
T Consensus 179 l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3455666666654 3555 44666677777773 77777777777777765323466666777777664 7
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHH
Q 007613 284 DWEFACSVYDDMTKKGVI--PDEVF 306 (596)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~--p~~~~ 306 (596)
+.+++.+.+++.+..... |+...
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhH
Confidence 777777777777776555 55433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.13 Score=41.95 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 007613 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (596)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 395 (596)
..+.+-|.+..+.+ +++..+...+..++++++ +.+++..+|+...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555555544 355666666666666666 4556777777666543 13 23444455666677777777777
Q ss_pred HHHHHHhCCCCCC
Q 007613 396 VLSDMKSLGLCPN 408 (596)
Q Consensus 396 ~~~~m~~~g~~p~ 408 (596)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777766 4554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=2.4 Score=38.72 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 007613 250 VDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEA 322 (596)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 322 (596)
...|...+++..+.+..- +...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456777777777764210 356788888888884 88889999988888765432356666777777774 88888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHH
Q 007613 323 AFEILQEAKNQGIS--VGIISYS 343 (596)
Q Consensus 323 a~~~~~~~~~~~~~--~~~~~~~ 343 (596)
+.+.+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888887655 5544333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=1.6 Score=36.53 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 007613 129 LYTTLITTCAKSGKVDAMFEVFH 151 (596)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~ 151 (596)
.|..|.....+.|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 34444444444444444444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=1.3 Score=34.91 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (596)
...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33334444444444444444443221 23444444444444444444444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.59 Score=36.56 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=62.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 007613 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP--NTITYSILLVACERKDDV 425 (596)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~ 425 (596)
....+..+.+-|......| .++..+-..+..++.++....+ ++.+++++.+.+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455666666555544 3667776677778887776665 788888877653 23 223344556678888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007613 426 EVGLMLLSQAKEDGVIPNLVMFKCII 451 (596)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li 451 (596)
++|++.++.+++ ++|+..-...|-
T Consensus 91 ~~A~~~~~~lL~--~eP~n~QA~~Lk 114 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 999998888888 567654444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.28 Score=37.25 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
...+..+..++.+.|+++.|...++++.+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555555555555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.74 Score=34.78 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=25.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 239 ALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
.+...+.+.|++..|...|+...+.. -.+...++..+..+|.+.|+++.|+..+++..+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444444433320 012234444445555555555555555554444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=2 Score=33.81 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=74.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 253 (596)
-.|.+++..++..+..... +..-+|.+|--....-+-+-..++++..-.. +.. ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi------------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL------------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG------------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc------------HhhhcHHHH
Confidence 3566666677766665432 4455555555555555666666666655431 111 122333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
..-+-.+-. +.......++.+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.++-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 332222211 113444555666666666666666666543 23456666666667777777777777777776666
Q ss_pred CC
Q 007613 334 GI 335 (596)
Q Consensus 334 ~~ 335 (596)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 64
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.9 Score=36.56 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=70.7
Q ss_pred CCCChHhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHH
Q 007613 88 PNPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMV 154 (596)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~ 154 (596)
.+.|..+|-..+...-+.|+. +..+++|++.... ++|+.. .|--|-- .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356778888888888888888 8888888887764 466421 1111110 1123478888888888887
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007613 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (596)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (596)
+.. +.=...|......=.+.|++..|.+++.+....+..|
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 652 2226666666666777888888888888888776443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.73 Score=37.08 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=47.0
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (596)
..++.++|.++|+.+++.+-+- ...|.....--.+.|++..|++++.+.+..+..|....-.++-
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 3478889999999886642222 5566666666678999999999999999887776654444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.69 Score=36.18 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHH
Q 007613 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 393 (596)
.+..+.+-+......| .++..+-..+..++.++.+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3566666667777777766554 777777776543 12 223344566677788888888
Q ss_pred HHHHHHHHhCCCCCC
Q 007613 394 MEVLSDMKSLGLCPN 408 (596)
Q Consensus 394 ~~~~~~m~~~g~~p~ 408 (596)
.+.++.+.+ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888776 4564
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.86 E-value=14 Score=39.91 Aligned_cols=346 Identities=11% Similarity=0.010 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCHHHH-HH-HHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC----CChHh--HHHHHHH
Q 007613 30 HSYNRLIRQGRISEC-ID-LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST--FNMLMSV 101 (596)
Q Consensus 30 ~~~~~l~~~g~~~~A-~~-~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~--~~~li~~ 101 (596)
...|.++..|--.+. +. -.+++.+.. +|.......-+.+ ...|+.++++..++.... .+..+ =..+.-+
T Consensus 344 ~f~Naf~naG~~~D~~l~~~~~Wl~k~~--~~~k~sA~aSLGl-Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 344 SVANGFMHAGTTDNSFIKANLPWLGKAQ--NWAKFTATASLGV-IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHTTTTCCCHHHHHCHHHHHHCC--THHHHHHHHHHHH-HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhcchhhhhccc--hHHHHHHHHHhhh-hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 345888877754333 22 234566653 4544332222222 233566778888877543 22222 2223334
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhh--HH--HHH
Q 007613 102 CASSKDSEGAFQVLRLVQEAGL-------KADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHT--YG--ALI 169 (596)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~--~~--~li 169 (596)
....|..+++..++.......- .+....-..+.-+++-.|. -+++.+.+..+.... +..+ .. +|.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALG 497 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMG 497 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHh
Confidence 5566666678887766554321 0112223334334433443 246667776666532 2221 22 333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHH---HHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI--TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKAC 244 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~ll~~~ 244 (596)
..+.-.|+-+....++..+.+.. +......+. -++...|+.+.+..+++.+... ..|. .-|. ++.-+|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~-vRygaa~alglAy 570 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESL-LRYGGAFTIALAY 570 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHH-HHHHHHHHHHHHT
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHH-HHHHHHHHHHHHh
Confidence 34556778777777777766542 333333333 4455778888888888887753 1222 2233 334567
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 007613 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAA 323 (596)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a 323 (596)
+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 78888887777888887642 2222222233334445677777778887666654 34443333333344444443 678
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHH
Q 007613 324 FEILQEAKNQGISVGIISYSSLMGACSNAK---------NWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKT 393 (596)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A 393 (596)
.+++..+... +|..+-..-+.++...| ++..-++.+...... ...++...-..+..|....|.-.-.
T Consensus 649 id~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t 725 (963)
T 4ady_A 649 IDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 725 (963)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence 8888888653 34444444444444322 455555554444432 2123445555666777777655433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.70 E-value=3 Score=30.65 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
-..+.+||..+-+.+...+. ...+...-+....++|++++|..+.+..+.||...|.+|-.. +.|-.+.+..-+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 35688999999999988873 333333333445567999999999999999999999887653 5677777777776
Q ss_pred HHHHcCCCCCHHHH
Q 007613 117 LVQEAGLKADCKLY 130 (596)
Q Consensus 117 ~m~~~g~~~~~~~~ 130 (596)
++...| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776665 4433333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.66 E-value=2.8 Score=30.73 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
-..+.+||..+-+.+...+. ...+...-+....++|++++|..+.+..+.||...|.++-. .+.|-.+.+..-+.
T Consensus 18 G~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 35688999999999988873 33333333344556799999999999999999999988754 46777777777777
Q ss_pred HHHHcCCCCCHHHH
Q 007613 117 LVQEAGLKADCKLY 130 (596)
Q Consensus 117 ~m~~~g~~~~~~~~ 130 (596)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 777666 4444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.51 E-value=4.1 Score=30.10 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
+.-+..+-++.+....+.|++....+.+.||.+..++..|.++++-++.. ..+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45567777888888889999999999999999999999999999988743 223355788887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.00 E-value=15 Score=41.48 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (596)
..-|..++..+.+.+.++.+.++-...++..-+.+ ...|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34577788888888888888877666554321112 12577888888888999988888887776533 4566777
Q ss_pred HHHHHhccCCHHH
Q 007613 203 LITACGQSGAVDR 215 (596)
Q Consensus 203 li~~~~~~g~~~~ 215 (596)
|+..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7777777776554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.67 E-value=7.6 Score=30.43 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.-+..+-++.+....+.|++......+.+|.+..++..|.++|+-++.. ..+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3356666777777889999999999999999999999999999988743 334456788887654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=2.5 Score=40.94 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 007613 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVF 200 (596)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 200 (596)
...++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445666667777777777776666543 44666777777777777777777777766543 3777776554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.78 E-value=7.4 Score=41.05 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.|...|+++.|+.+-++..... +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556677888888777777663 5556778888888888888888877777663
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=2.7 Score=40.79 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=85.0
Q ss_pred ChHhHHHHHHHH---HhcCChHHHHHHHHHHHHc--CCC-CCHHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHh
Q 007613 91 TLSTFNMLMSVC---ASSKDSEGAFQVLRLVQEA--GLK-ADCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVH 163 (596)
Q Consensus 91 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~ 163 (596)
|...|..++... ...|+.+.|...++..... |.. ++.. ...+-.. ..-+++.. ..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------VL 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------HH
Confidence 444555555432 2357888888888887753 211 1110 0112111 12222222 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh---CCCCCCCCHHHHH
Q 007613 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA---EVHPVDPDHITIG 238 (596)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 238 (596)
+...++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. ...|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 35567788889999999999999887663 56888999999999999999999999887643 2347889877643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.55 E-value=2.6 Score=44.42 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-CH----
Q 007613 273 TIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQ------GISV-GI---- 339 (596)
Q Consensus 273 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~------~~~~-~~---- 339 (596)
..++..+...++ .+.|..+|+++......-+......++......+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444554545555 4678888888776643212222222333332222 223445544443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007613 340 ------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (596)
Q Consensus 340 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (596)
.....=.+.+...|+++.|.++-++....- +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222344567899999999999988753 3457899999999999999999999998863
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.18 E-value=27 Score=34.32 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCC----HHHH
Q 007613 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVY 272 (596)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~ 272 (596)
.|...+...|++.+|..++..+..+..+..+. ...+...+..|...+++..|..++.++... ...++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 45556666666766666666655432222211 223444455666666666666666654321 11111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 007613 273 TIAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m 295 (596)
..++..+...+++.+|.+.|.+.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555556666555555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.14 E-value=12 Score=29.35 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007613 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (596)
.|+..+--.+..++.++... .+++.+++++.+.+ | ....+-.+.-++.+.|++++|++..+.+++ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 56776666677777776654 46888888887654 4 234455666788999999999999999988 678776
Q ss_pred HHHHHHHH
Q 007613 446 MFKCIIGM 453 (596)
Q Consensus 446 ~~~~li~~ 453 (596)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.08 E-value=7.6 Score=28.55 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356777777777766542 22222233344567788888877766554 677777777655 4667777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 007613 186 GIMRSKNVKPDRVVF 200 (596)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (596)
.++..+| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777666 3444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=83.70 E-value=0.0015 Score=63.38 Aligned_cols=233 Identities=11% Similarity=0.140 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007613 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (596)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (596)
+.+|..|..+....+++.+|++-|-+ ..|+..|..+|....+.|.+++-++.+...++..- +...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 34677788887777777777765522 23666777888888888888887777765554422 33444577888
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007613 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (596)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (596)
|++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 126 yAk~~rL~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 126 LAKTNRLAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHTSCSSSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHhhCcHHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 88888766433221 135555566677778888888877777765433 333445556666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
.|.+.-++ .-+..||.-+-.+|...+.+..|--.--.+.-.. .-...++..|-..|.+++-..+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 65543221 1255678888888888888776644333333221 122345667888888888888888776
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007613 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (596)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (596)
... ......|+-|.-.|++- ++++-.+.++
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 432 45677788888777765 3555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.62 E-value=7.2 Score=28.63 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (596)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 356777777777766542 22222223344567788888877765554 677777777654 4677777777777
Q ss_pred HHHHhCCCCCCHHHH
Q 007613 186 GIMRSKNVKPDRVVF 200 (596)
Q Consensus 186 ~~m~~~g~~p~~~~~ 200 (596)
.++..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777666 3444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.96 E-value=12 Score=29.48 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007613 336 SVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (596)
.|+..+--.+..++.++.+. .+++.+++.+.+.+.......+-.|.-|+.+.|++++|.+..+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34444444455555555442 34555666555433111234444555566666666666666666665 3454
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.33 E-value=15 Score=27.10 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
-+..+-++.+....+.|++....+.+.+|.+.+++..|..+|+-++.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 596 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.15 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.56 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.15 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.09 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.85 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.55 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.23 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-20 Score=185.46 Aligned_cols=379 Identities=13% Similarity=0.050 Sum_probs=249.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCCh
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (596)
.+...+.|++++|++.|+++.+.. |.+...+..++.++...|++++|...|+++. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 345668889999999998888876 6666666667777777777778877777643 34556777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (596)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (596)
++|+..+....+.. +.+..............+....+........... .................+....+...+.+.
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 77777777777654 4444555555555555566666555555544433 334444455555566667777777776666
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 007613 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (596)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (596)
.... +-+...+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...++.....+ +.+
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 5542 2345566666677777777777777777766431 2234566666777777777777777777776655 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
...+..+...+.+.|++++|+..|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 666667777777777777777777777665433 45666667777777777777777777666653 4556666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 424 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 424 (596)
+.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+ +.|+ ..+|..+..++.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 777777777777777766543 23455666677777777777777777777665 3454 4556666666666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1e-19 Score=179.15 Aligned_cols=372 Identities=13% Similarity=0.082 Sum_probs=303.2
Q ss_pred HHHhhhHHHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007613 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (596)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (596)
....+.|++++|++.|+++. +.+...+..+...+.+.|++++|...++...+.. +-+..++..+..+|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34456788999999998763 4467889999999999999999999999998875 5567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
|.+.+....+.. +.+...+..........+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999988765 4455556666666666666666666665555443 33445555666677778888888888887765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007613 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (596)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (596)
. .+.+...+..+...+...|++++|...++...+.+ +.+..+|..+...+...|++++|...+++....+.. +..
T Consensus 164 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred c---CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 3 23346677788889999999999999999998876 567889999999999999999999999998886544 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (596)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (596)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 88888999999999999999999998875 5567889999999999999999999999887654 567888999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 007613 386 DGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 454 (596)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~ 454 (596)
+.|++++|++.|++..+. .|+ ..++..+..++...|++++|...|+++++ +.|+ ...|..|..+|
T Consensus 317 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 999999999999998874 554 66788899999999999999999999988 5665 44555555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.3e-13 Score=126.68 Aligned_cols=271 Identities=12% Similarity=-0.010 Sum_probs=156.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (596)
.....+.+.|++++|...|+.+.+.. |-+..+|..+..+|...|++++|...|.+..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 44556788899999999999998865 4567889999999999999999999999988764 446788888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007613 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (596)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (596)
++++|.+.+++.... .|+............. ..+.......+..+...+...++...
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG---------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh---------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 999999999988765 2322111000000000 00000000111122233334445555
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007613 257 YKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (596)
Q Consensus 257 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (596)
|.+..+.+. ..+..++..+...+...|++++|+..|++....... +...|..+...+...|++++|.+.+++..+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 554443321 123445555555555556666666666555544322 34455555555566666666666665555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007613 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKS----------IKLKPTVSTMNALITALCDGDQLPKTM 394 (596)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (596)
+-+..++..+..+|.+.|++++|...|++..+ .........|..+-.++...|+.+.+.
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 23445555566666666666666666655543 011223345555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.1e-12 Score=119.18 Aligned_cols=272 Identities=11% Similarity=0.028 Sum_probs=200.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007613 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (596)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (596)
....+.+.|++++|.+.|+++++.. +.+..+|..+..+|...|++++|...|.+..+.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4556778999999999999998874 4468889999999999999999999999988763 3357788888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007613 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (596)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (596)
+++|.+.+...... .|+.............. .+.......+..+...+.+.+|...|
T Consensus 103 ~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 103 QRQACEILRDWLRY----TPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHHHHHHHHHHHT----STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHh----ccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence 99999999988753 33321110000000000 00011112223344556678888888
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007613 293 DDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (596)
Q Consensus 293 ~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (596)
.+..+... .++...+..+...+...|++++|...++...... +.+..+|..+...|.+.|++++|.+.|++..+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 88776433 3467788888899999999999999999998875 4568889999999999999999999999998753 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007613 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----------LGLCPNTITYSILLVACERKDDVEVGLML 431 (596)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 431 (596)
.+..+|..+..+|.+.|++++|++.|++..+ .........|..+-.++...|+.+.....
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4678899999999999999999999998764 12233455677777777777877655433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.9e-09 Score=99.03 Aligned_cols=204 Identities=9% Similarity=0.046 Sum_probs=145.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH-HHHHHHHHHhhCC---CCChHhHHHHHHHHHhcCChHH
Q 007613 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (596)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 110 (596)
+.+.+++++|+++++++++.+ |.+...+...+.++...+ ++++|+..++++. +.+..+|+.+...+.+.|++++
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence 447899999999999999988 777777777666666554 4788888887653 4567788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------HHHHHHH
Q 007613 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ------VAKAFGA 184 (596)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~ 184 (596)
|+..++.+.+.. +.+...|..+...+.+.|++++|++.|+++++.. +.+...|+.+...+.+.+. +++|+..
T Consensus 131 Al~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 131 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 888888888765 5568888888888888888888888888888764 4567778777766666554 5678887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 007613 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (596)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 245 (596)
+.+..+.. +.+...|+.+...+... ..+++.+.+....... .-..+...+..+...|.
T Consensus 209 ~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~-~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 209 TLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQ-PSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHT-TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhC-CCcCCHHHHHHHHHHHH
Confidence 77777653 34566776665555443 3456666666554321 11233445555555553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4e-08 Score=91.90 Aligned_cols=194 Identities=7% Similarity=0.022 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
.++.+...+.+.+.+++|+.+++.+++.. |-+...|+....++...| ++++|++.++...+.. +-+..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44555555556666666666666666653 334555666665655554 3566666666655543 34455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC---
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--- 249 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--- 249 (596)
.+.|++++|+..|+++.+.. +-+...|..+...+.+.|++++|.+.++.++... +.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccch
Confidence 66666666666666665542 3345566666666666666666666666655421 1234445444444444433
Q ss_pred ---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007613 250 ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (596)
Q Consensus 250 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (596)
+++|...+....+.. +.+..+|+.+...+... ..+++.+.++..
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~ 245 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 234444454444443 33444444443333222 233444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=2.8e-08 Score=92.94 Aligned_cols=187 Identities=15% Similarity=0.112 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007613 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (596)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (596)
..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887655667788888899999999999999999998876554445678888888889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CC
Q 007613 329 EAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LC 406 (596)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 406 (596)
.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.++|..+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 988875 3344455444433 344688999999999988753 4567889999999999999999999999987642 34
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 407 PN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 407 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 45788888877888999999999988876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.3e-07 Score=89.79 Aligned_cols=268 Identities=11% Similarity=-0.006 Sum_probs=163.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHhhHHHHH
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EP----NVHTYGALI 169 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~----~~~~~~~li 169 (596)
...+...|++++|+++++...+.....+ ..++..+..+|...|++++|.+.|++..+... .+ ...++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3456677888888888887776532111 23566677778888888888888877654210 11 123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMRS----KNVKPD---RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGAL 240 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~l 240 (596)
..+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+......... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677778888888877776543 111111 123445566777788888888877776543211 11223444555
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYN--IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li 311 (596)
...+...++...+...+....... ... ....+..+...+...|++++|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 566677777777777766554321 111 12345556667777788888888777765443221 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 312 DFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (596)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (596)
..+...|++++|...++.+.. .+..| ...++..+..+|.+.|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777888888777776653 22222 23456667777777888888877777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=7.4e-08 Score=89.96 Aligned_cols=150 Identities=10% Similarity=0.090 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007613 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (596)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (596)
++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++...........|...+..+.+.|+.+.|.++|..+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555555433333444555555555555555555555555554321112234555555555555555555555555
Q ss_pred hhCCCCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 224 NAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (596)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (596)
.... +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++...
T Consensus 161 l~~~---~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HTST---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhC---CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4321 1111222222111 122344455555555444432 33344444444444444455444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.4e-07 Score=89.58 Aligned_cols=265 Identities=11% Similarity=-0.024 Sum_probs=147.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHH
Q 007613 172 CAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKA 243 (596)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ll~~ 243 (596)
+...|++++|++++++........+ ...++.+...+...|++++|...+.+....... .++ ...+..+...
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHH
Confidence 4445555555555555443310000 123334444455555555555555544321000 011 1223334445
Q ss_pred HHHcCChhHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 007613 244 CANAGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPDEVFLSALID 312 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~ 312 (596)
+...|++..+...+...... .... ....+..+...+...|+++.+...+....... .......+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 55566666666555544321 1111 12244455666677777777777776655422 1122344455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 007613 313 FAGHAGKVEAAFEILQEAKNQ----GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITA 383 (596)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~ 383 (596)
.+...+....+...+...... +..+ ....+..+...+...|+.++|...++...+..... ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 666677777777766655432 1111 12345556667778888888888888766532222 23456667788
Q ss_pred HHcCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (596)
+...|++++|...+++... .+..|+ ..++..+..++.+.|++++|.+.+++.++
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999888887653 244444 34567777888999999999999988765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=7.3e-09 Score=98.36 Aligned_cols=146 Identities=6% Similarity=-0.053 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 007613 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTC----------AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (596)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (596)
+..++|+++++...+.. |-+...|+..-..+ ...|++++|+..++...+.. +.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 34467777777776653 22333443322222 12233556666666665543 34555566665555554
Q ss_pred CC--HHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhH
Q 007613 176 GQ--VAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (596)
Q Consensus 176 g~--~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (596)
++ +++|+..+.+..+.. +++...+.. ....+...+..++|.+.++.+.... +-+...|..+...+.+.|++++
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHH
Confidence 43 566666666666542 233444432 3345555666666666666655431 2234555666666666666655
Q ss_pred HHHHH
Q 007613 253 AREVY 257 (596)
Q Consensus 253 a~~~~ 257 (596)
|...+
T Consensus 197 A~~~~ 201 (334)
T d1dcea1 197 SGPQG 201 (334)
T ss_dssp SSSCC
T ss_pred HHHHH
Confidence 54433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.3e-08 Score=92.54 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=117.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007613 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (596)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (596)
.+|..+...|.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 356666777888888888888888888764 4567788888888888888888888888888764 34566788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC---
Q 007613 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--- 249 (596)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--- 249 (596)
...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHHH
Confidence 88888888888888887653 233444444444445555555544444444432 11111111 1222211111
Q ss_pred -hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 250 -VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (596)
Q Consensus 250 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (596)
.+.+...+....... +....+|..+...|...|++++|.+.|++.....
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 111111111111100 1112355566677777777777777777766553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.5e-07 Score=85.20 Aligned_cols=199 Identities=14% Similarity=-0.010 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (596)
++..+...|.+.|++++|...|++..+.+ +.++.+|+.+..+|.+.|++++|++.|++..+.... +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 45556667777777777777777777765 556777777777777888888888887777765443 4556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh----h
Q 007613 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL----P 391 (596)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~ 391 (596)
..|++++|...++...+.. +.+......+...+.+.+..+.+..+........ ++...++ ++..+...... +
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7788888888777777654 3344444444444555555555555555444422 2222222 22222211111 1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007613 392 KTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (596)
Q Consensus 392 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (596)
.+...+..... ..|+ ..+|..+...+...|++++|...|++.++. .|+.
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 11111111111 1122 235666777888889999999999888873 4543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=8.1e-09 Score=98.04 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHH----------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 007613 142 KVDAMFEVFHEMVNAGIEPN-VHTYGALIDGC----------AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (596)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (596)
..++|++++++.++. .|+ ...|+..-..+ ...|++++|+..++...+.. +-+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 346777777776654 333 33343322222 12233455555555555432 22344444444444443
Q ss_pred C--CHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 211 G--AVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 211 g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
+ ++++|...+..+... -+++...+.. ....+...+..++|...++.+.+.+ +.+..+|+.+...+.+.|++++
T Consensus 121 ~~~~~~~a~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhh---CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 3 345555555555432 0122333222 2233444455555555555555444 3444555555555555555544
Q ss_pred HH
Q 007613 288 AC 289 (596)
Q Consensus 288 a~ 289 (596)
|.
T Consensus 197 A~ 198 (334)
T d1dcea1 197 SG 198 (334)
T ss_dssp SS
T ss_pred HH
Confidence 43
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.2e-06 Score=73.13 Aligned_cols=121 Identities=15% Similarity=0.009 Sum_probs=97.7
Q ss_pred HhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007613 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150 (596)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (596)
+...|+++.|++.|.++.+++..+|..+..++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|
T Consensus 15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 4456789999999999888888889999999999999999999999998876 557888999999999999999999999
Q ss_pred HHHHHCCC------------C--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007613 151 HEMVNAGI------------E--PN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (596)
Q Consensus 151 ~~m~~~g~------------~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (596)
++.....- . ++ ..++..+..++.+.|++++|.+.|.......
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88775310 0 01 2445667778888899999988888887653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=4.5e-06 Score=76.64 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 007613 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA- 121 (596)
Q Consensus 43 ~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 121 (596)
++-+++++..+.+. ....+...+. .....++++|..+|.+ ....|...+++++|.+.|.+..+.
T Consensus 3 ~~~~~l~~aek~~~--~~~~~~~~~~--~~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 3 DPVELLKRAEKKGV--PSSGFMKLFS--GSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CHHHHHHHHHHHSS--CCCTHHHHHS--CCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--cchhHHHHhc--CCccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45566666665552 1111211111 1334567888776554 466788889999999999887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHh-
Q 007613 122 ---GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRS- 190 (596)
Q Consensus 122 ---g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~- 190 (596)
+-++ -..+|..+..+|.+.|++++|.+.+++.... |. .....++..+...|-. .|++++|+..|++..+
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 2112 1357888888999999999999988876542 10 1113445566666644 5888888888887653
Q ss_pred ---CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007613 191 ---KNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDH-ITIGALMKACANAGQVDRAREVYKMIHK 262 (596)
Q Consensus 191 ---~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (596)
.+.++. ..++..+...+...|++++|.+.|++......... ... ..+...+..+...|+++.|...++...+
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 121111 23466677788888888888888888765321111 010 1223334455667777777777777665
Q ss_pred cCCCC----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 007613 263 YNIKG----TPEVYTIAINCCSQ--TGDWEFACSVYDDMT 296 (596)
Q Consensus 263 ~~~~~----~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 296 (596)
..... .......++.++.. .+.+++|+.-|+++.
T Consensus 228 ~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 43111 11233445555444 234666666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2e-05 Score=66.91 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=50.5
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007613 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (596)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (596)
.+...|+++.|++.|.++. +|+..++..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 3455566666666665431 3445555566666666666666666666666655 44556666666666666666
Q ss_pred HHHHHHHHHHHh
Q 007613 286 EFACSVYDDMTK 297 (596)
Q Consensus 286 ~~a~~~~~~m~~ 297 (596)
++|++.|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.7e-05 Score=61.20 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=60.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 007613 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (596)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (596)
...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..+....+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445566677777777777666654 4456666666677777777777777777666654 45666666666677777777
Q ss_pred HHHHHHHHHHHhC
Q 007613 179 AKAFGAYGIMRSK 191 (596)
Q Consensus 179 ~~A~~~~~~m~~~ 191 (596)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.4e-05 Score=61.69 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=34.6
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (596)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (596)
+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|+..+....+.+.. +...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHH
Confidence 333444444444444444333 333334444444444444444444444444333222 333333444444444444444
Q ss_pred HHHHHHHH
Q 007613 324 FEILQEAK 331 (596)
Q Consensus 324 ~~~~~~~~ 331 (596)
+..|+...
T Consensus 91 ~~~~~~a~ 98 (117)
T d1elwa_ 91 KRTYEEGL 98 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=2.5e-05 Score=71.51 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=108.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYN----I-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSAL 310 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~l 310 (596)
...|...+++++|.+.|.+..+.. - .....+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 445777778888888877765431 0 111346777778888888888888887765432 11 0012344455
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 007613 311 IDFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-----V-STMN 378 (596)
Q Consensus 311 i~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~-~~~~ 378 (596)
...|.. .|++++|++.+.+..+. +.++ ...++..+...|.+.|++++|...|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555533 57777777777766432 1111 133466677777777777777777777665321111 1 1233
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 007613 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN------TITYSILLVACER--KDDVEVGLMLLSQAK 436 (596)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~--~g~~~~a~~~~~~~~ 436 (596)
.++..+...|+++.|...+++..+. .|+ ......++.++.. .+.++++...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3444555667777777777776553 221 1233445555443 234566666554433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.7e-05 Score=63.93 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=59.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007613 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (596)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (596)
...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|+..|++..+.... +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 345566666666666666666665 455666666666666666666666666666665433 455666666666666666
Q ss_pred HHHHHHHHHHHHCC
Q 007613 321 EAAFEILQEAKNQG 334 (596)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (596)
++|...+++..+..
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=6.7e-06 Score=63.84 Aligned_cols=108 Identities=14% Similarity=0.046 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007613 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNT-ITYSILLVA 418 (596)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 418 (596)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456667777788888888888877654 45667777777777765544 4588888887764322332 356677778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007613 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (596)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (596)
|.+.|++++|++.|+++++ +.|+..-...+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHHH
Confidence 8888888888888888887 55776555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.0018 Score=57.64 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 007613 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQ 356 (596)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 356 (596)
...+...+......+ +...+..+...+.. ..+...+...++...+.| +......|...|.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 344444444443332 33344444444443 234455555555555544 33444444444443 34666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 007613 357 KALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (596)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (596)
+|...|++..+.| +...+..|...|.+ ..+.++|.+.|++..+.|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6777776666643 34455555555543 235666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.1e-05 Score=63.53 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=71.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (596)
....|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.++.. +.+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3456677888888888888887765 5567778888888888888888888888877764 4456778888888888888
Q ss_pred HHHHHHHHHHHHhC
Q 007613 178 VAKAFGAYGIMRSK 191 (596)
Q Consensus 178 ~~~A~~~~~~m~~~ 191 (596)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888887765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.18 E-value=0.0019 Score=57.43 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 007613 270 EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIIS 341 (596)
Q Consensus 270 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (596)
..+..|...|.. ..+...+...++...+.| +......+...|.. ..+++.|+..|....+.| ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 344444444443 234445555555544443 33333334333333 346677777777766665 3445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007613 342 YSSLMGACSN----AKNWQKALELYEHMKSIK 369 (596)
Q Consensus 342 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (596)
+..|..+|.+ ..+.++|.+.|++..+.|
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5556666654 235666777777666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=1.6e-05 Score=68.10 Aligned_cols=98 Identities=8% Similarity=-0.063 Sum_probs=57.6
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 007613 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (596)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (596)
|+...+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 344444555556666666666666666665553 4455566666666666666666666666665442 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007613 170 DGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (596)
.+|.+.|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=2.2e-05 Score=67.20 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (596)
..+......|.+.|++++|+..|.+.....+. +...|..+..+|.+.|++++|+..|..+.+.. +-+..+|..+..+|
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 33344444455555555555555554444322 44445555555555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007613 350 SNAKNWQKALELYEHMK 366 (596)
Q Consensus 350 ~~~g~~~~A~~~~~~m~ 366 (596)
.+.|++++|...|++..
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.03 E-value=3e-05 Score=59.16 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=59.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 007613 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (596)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (596)
+...+.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4445666777777777777776654 3356677777777777777777777777766653 4456667777777777777
Q ss_pred HHHHHHHHHHH
Q 007613 178 VAKAFGAYGIM 188 (596)
Q Consensus 178 ~~~A~~~~~~m 188 (596)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.8e-05 Score=61.34 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007613 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (596)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~ 383 (596)
..++..+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|..+|+++.+....|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667778888888888877765 5567777777777776544 4467888887775432222 2356677778
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007613 384 LCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (596)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (596)
|.+.|++++|++.|+++.+ +.|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 8888888888888888777 4566443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=3.9e-05 Score=58.51 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007613 341 SYSSLMGACSNAKNWQKALELY 362 (596)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~ 362 (596)
.+..+...|...|++++|.+.+
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l 107 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASL 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHH
Confidence 3333333333333333333333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.009 Score=54.38 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (596)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (596)
||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444444455556666666666666654431 5556666666666666666655432 345666666
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007613 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (596)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (596)
.++.+......+. +.. .....+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 6666555443321 111 1222333444556666666666666666666654432 445556666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.0091 Score=54.38 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=54.3
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007613 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (596)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (596)
|..--..+.+.|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 333334444445555555555555543321 344445555555555555544332 13445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 007613 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (596)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 247 (596)
.+.+......+ .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHh
Confidence 55554444332 1112222233334445555555555555555555544321 123444455555555553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=1.1e-05 Score=80.11 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +.+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555556666666655554443321 12345555666666666777776666666654 4455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007613 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (596)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (596)
|...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666777777776666666544 4556666666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00074 Score=55.55 Aligned_cols=76 Identities=12% Similarity=-0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
+|+.+..+|.+.|++++|+..++..++..+. +...+..+..+|...|++++|...|+...+.. |-+..+...+-..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555666666667777777666666665433 55666666666666666666666666666654 2244444444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.73 E-value=0.00066 Score=54.71 Aligned_cols=77 Identities=21% Similarity=0.132 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
.+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|+..|++.++ +.|+.......+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 467778888999999999999999988742 34678899999999999999999999999998 456654444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.0002 Score=55.94 Aligned_cols=93 Identities=11% Similarity=0.188 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHHHHH
Q 007613 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSILLV 417 (596)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ll~ 417 (596)
.+...|.+.|++++|...|.+..+.. +.+..+|..+..+|.+.|++++|+..++++.+.. .... ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666543 3445666666666666666666666666654311 0000 134555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007613 418 ACERKDDVEVGLMLLSQAKE 437 (596)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~ 437 (596)
.+...+++++|...|++.+.
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66677777777777776665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00039 Score=54.14 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HhhHHH
Q 007613 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VHTYGA 167 (596)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ 167 (596)
+..+...+.+.|++++|+..|++.++.+ +.+..++..+..+|.+.|++++|++.++++++.. +.+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4456667778888888888888887765 4567788888888888888888888888876532 111 235556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 168 LIDGCAKAGQVAKAFGAYGIMRSK 191 (596)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~ 191 (596)
+...+...+++++|+..|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666677777788888887776644
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00067 Score=55.80 Aligned_cols=60 Identities=8% Similarity=-0.135 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
|+.+..+|.+.|++++|+..+++.+... +.+..+|..+..+|...|++++|...|+....
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555555555555555442 22444555555555555555555555555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.61 E-value=0.00084 Score=54.05 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007613 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (596)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (596)
..+..-...+.+.|++.+|+..|.+....-.. ++..... .... ....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN-------IEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh-------HHHHHHhhH
Confidence 34556667778888888888888877653211 1111100 0000 113467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007613 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (596)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 412 (596)
..+|.+.|++++|...++...+.. +.+..+|..+..+|...|++++|+..|++..+ +.|+....
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 888999999999999999888765 45788899999999999999999999999887 45664443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=3.1e-05 Score=76.75 Aligned_cols=112 Identities=10% Similarity=-0.084 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007613 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (596)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (596)
..+..+...+.+.|+.+.|...+........ ..++..+...+...|++++|+..|++..+..+. +...|+.+...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 3444555556666666666655554443221 245556667777777777777777777665433 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007613 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (596)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (596)
...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 77777777777777776654 4556666666666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.0012 Score=54.18 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
.|..+..+|.+.|++++|+..+.+.++.... +...|..+..++...|++++|+..|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554332 4455555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.00055 Score=56.75 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcC
Q 007613 29 LHSYNRLIRQGRISECIDLLEDMERK--GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (596)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (596)
....+.+...|++++|.+.|.+.... |.+..+......+ ...+.++ .+.....+..+...+.+.|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~---------~~~r~~l----~~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV---------EPFATAL----VEDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH---------HHHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHH---------HHHHHHH----HHHHHHHHHHHHHHHHHCC
Confidence 33445566899999999999998874 2110000000000 0000000 0112334566666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhh
Q 007613 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHT 164 (596)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 164 (596)
++++|+..++.+.+.. +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 7777777777776654 45666777777777777777777777776533 466665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.0003 Score=56.22 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007613 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA----------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (596)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (596)
+.+++|+..++...+.. |.+..++..+..+|... +.+++|...|++..+.. +.+..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 33444444444444443 33344444444444322 23345555555555433 23445555555555433
Q ss_pred C-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007613 388 D-----------QLPKTMEVLSDMKSLGLCPNTITYSILL 416 (596)
Q Consensus 388 g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll 416 (596)
| .+++|.+.|++..+ +.|+..+|..-+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L 126 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 126 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHH
Confidence 2 23455555555554 345544444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.0019 Score=53.29 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHH
Q 007613 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEV 305 (596)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~ 305 (596)
.+..+...+.+.|++++|...++.+.+.+ +.+...|..++.+|.+.|+.++|++.|+++. +.|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 34445555666666666666666666554 4555666666666666666666666665542 235555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.41 E-value=0.0011 Score=54.45 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
...|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..++.+.|++++|.+.|.....
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555666666666666666666666543 33455666666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.36 E-value=0.005 Score=50.17 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=28.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007613 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (596)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (596)
+..+|.+.|++++|+..++...+.+ +.+..+|..+..+|...|++++|+..|.+....
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555544443 344444444445555555555555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.30 E-value=0.00074 Score=53.77 Aligned_cols=80 Identities=8% Similarity=-0.078 Sum_probs=44.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 007613 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (596)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (596)
+.+.+++|++.|+...+.+ |.+...+..++.++...+++..+.+ ..+.+++|+..|+
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD---------------------AKQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHHHHHHHH
Confidence 4556778888888887777 6666666666655554333322211 1123455556665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc
Q 007613 117 LVQEAGLKADCKLYTTLITTCAKS 140 (596)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~ 140 (596)
+..+.. |.+..+|..+..+|...
T Consensus 66 kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 66 EALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhc-chhhHHHhhHHHHHHHc
Confidence 555543 33455555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.30 E-value=0.0032 Score=51.43 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007613 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (596)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (596)
+|+.+..+|.+.|++++|+..++......+. +...|..+..++...|++++|...|..+.+.. |.+..+...+-..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555566666677777777777666665432 55666666666666667777766666666654 3344444444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.25 E-value=9.4e-05 Score=65.88 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC
Q 007613 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (596)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (596)
|...++.|++++|++.+++.++.. |.+...+..++.++...|++++|...|+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556678888888888888888877 666666666666666666666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00039 Score=61.74 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=66.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHH
Q 007613 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKA 181 (596)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 181 (596)
.+.|++++|+..++..++.. +.|...+..+...|+..|++++|.+.|+...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 45677777777777777764 556777777777777777777777777777765 333 33444444433333333222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 007613 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (596)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (596)
..-...-...+-+++...+......+...|+.++|.+++.++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 22111111111111222333344556666777777777766654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.49 E-value=0.026 Score=45.00 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=44.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC---
Q 007613 101 VCASSKDSEGAFQVLRLVQEAGL-KAD----------CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIEPN--- 161 (596)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~-~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~--- 161 (596)
.+.+.|++++|+..|++..+... .|+ ..+|+.+..+|.+.|++++|.+.+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34555777777777766654211 011 234555666666666666666665554431 01111
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 162 --VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (596)
Q Consensus 162 --~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (596)
..+++.+..+|.+.|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134444555555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.44 E-value=0.032 Score=44.40 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007613 412 YSILLVACERKDDVEVGLMLLSQAK 436 (596)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (596)
+..+..++...|++++|...|++.+
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666665554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.036 Score=39.69 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007613 97 MLMSVCASSKDSEGAFQVLRLVQEAG-----LKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (596)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (596)
.+...+.+.|++++|...|++..+.. ..++ ..+++.|..++.+.|++++|++.+++.++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444555555555555555443321 0111 234444555555555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.047 Score=38.98 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007613 237 IGALMKACANAGQVDRAREVYKMIHKY 263 (596)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (596)
+..+..++.+.|++++|+..++++.+.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 333444444444444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.28 E-value=0.23 Score=37.82 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHhCC
Q 007613 389 QLPKTMEVLSDMKSLG 404 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g 404 (596)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.15 E-value=0.32 Score=36.93 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDG 439 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~g 439 (596)
+.++|+++|++..+.| +......|...|.+ ..+.++|.+++++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 3455555555555443 22222233333322 335556666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.34 E-value=0.64 Score=34.09 Aligned_cols=138 Identities=15% Similarity=0.123 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 007613 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (596)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 253 (596)
-.|.+++..++..+..... +..-||.+|--....-+-+...++++..-.. ..+. .++++...
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLD--------------KCQNLKSV 75 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGG--------------GCSCTHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-cCch--------------hhhcHHHH
Confidence 3456666666666655431 3444555555555555555555555554331 1111 11222222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007613 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (596)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (596)
..-+-.+-. +.......++...+.|+-+.-.++++.+.+. -+|++...-.+..+|.+.|...++-+++.++-+.
T Consensus 76 v~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 221111111 1123334445555555555555555554442 2345555555555566666666666666555555
Q ss_pred CC
Q 007613 334 GI 335 (596)
Q Consensus 334 ~~ 335 (596)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 53
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.54 E-value=0.94 Score=33.20 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=79.0
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007613 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (596)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (596)
.-.|.+++..+++.+.... .+..-||.++--....-+-+...++++.+-+. .| ...+++...
T Consensus 13 ildG~ve~Gveii~k~~~s-----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~ 74 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS-----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS 74 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred HHhhhHHhHHHHHHHHccc-----CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHH
Confidence 3456667777777666542 23344454544444444444444444444321 11 112233333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
....+-.+- -+...+...++.....|+-++-.+++..+.+.+ ++++...-.+..+|.+.|...++-+++.+..+
T Consensus 75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333222221 133445666677777788888888887766644 66777777788888888888888888888777
Q ss_pred CCC
Q 007613 368 IKL 370 (596)
Q Consensus 368 ~~~ 370 (596)
.|.
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=1.2 Score=32.74 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007613 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (596)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (596)
.+...|--....++.++.. .++++.+|++..+.+ +.+. ..+-.|.-+|.+.|++++|++.++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 3555565556666766543 467888888877642 2233 4555667788889999999999998888 6677665
Q ss_pred HHHHHHH
Q 007613 447 FKCIIGM 453 (596)
Q Consensus 447 ~~~li~~ 453 (596)
...|..+
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.85 E-value=1.7 Score=30.08 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007613 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (596)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (596)
+.-++.+-++.+....+.|++....+.+.||.+..++..|.++++-++.. ..++...|..++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 44567777777877889999999999999999999999999999988743 233455788877653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=2.1 Score=31.40 Aligned_cols=68 Identities=6% Similarity=-0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007613 339 IISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (596)
Q Consensus 339 ~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (596)
..+--....++.++. +.++++.+|+.+.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+ +.|+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 334344444444443 2345666666655432 112 23444555566666666666666666655 34543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.23 E-value=9.9 Score=35.17 Aligned_cols=116 Identities=8% Similarity=-0.079 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007613 248 GQVDRAREVYKMIHKYNIKGTPEVYTI----AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (596)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (596)
.+.+.+..++........ .+..-+.. +.......+..+.+...+......+. +.......+......++...+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 467777777777665442 22222222 22233345667777777777666543 444444555556677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007613 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (596)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (596)
...+..+.... .......--+..++...|+.+.|...|.....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 88877664321 22233334566778888888888888888764
|