Citrus Sinensis ID: 007620
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.968 | 0.6 | 0.696 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.969 | 0.615 | 0.689 | 0.0 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/579 (69%), Positives = 481/579 (83%), Gaps = 3/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDRY+
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYV 749
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Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/579 (68%), Positives = 480/579 (82%), Gaps = 2/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+ D +LGPEK VHGYP+GA+INFV+WS DG+ ++FSVRVDEEDN S
Sbjct: 155 MSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHLSFSVRVDEEDNTSG- 213
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+WIAD E+GEA+PLF+SP+I LNA+F SFVWVNNSTLL+ TIP SR PP+K VP
Sbjct: 214 KLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPS 273
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNE N++ R +LLKDEYD LFDYY T+QLVL S DGT K G PAVYT++
Sbjct: 274 GPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSI 333
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD KY++I+S+HRPYSY VPC RF +KV++WT DG+ +RELCDLP AEDIP+ +SV
Sbjct: 334 DPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSV 393
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G RSI WR DKP+ LYWVE QD GDA VEVSPRDI+Y + AEP GE+PEILHKLDLR
Sbjct: 394 RKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLR 453
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ SWCD+SLALV E+WYKT +TRTW++ P KDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 454 YAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRR 513
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAK+KK+ DE YILLNG G TPEGN+PFLDLFDINTGSKERIW+S++EKY+E
Sbjct: 514 TAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYE 572
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ + + ++ L +LKILTSKESKTE TQY++ WP KK QIT+FPHPYP LASL
Sbjct: 573 TVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASL 632
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
KEMI+YQRKDGV LTATLYLPPGYD S+DGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 633 YKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
G+ TS L++LAR FA+L+GP+IPIIGEGD+ NDRY+
Sbjct: 693 PGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYV 731
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Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.971 | 0.633 | 0.734 | 0.0 | |
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.969 | 0.600 | 0.732 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.971 | 0.597 | 0.724 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.964 | 0.634 | 0.723 | 0.0 | |
| 449436423 | 970 | PREDICTED: probable glutamyl endopeptida | 0.971 | 0.595 | 0.718 | 0.0 | |
| 449436421 | 971 | PREDICTED: probable glutamyl endopeptida | 0.971 | 0.595 | 0.718 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.971 | 0.600 | 0.702 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.969 | 0.600 | 0.697 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.969 | 0.599 | 0.697 | 0.0 | |
| 2275219 | 955 | unknown protein [Arabidopsis thaliana] | 0.964 | 0.601 | 0.697 | 0.0 |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/579 (73%), Positives = 503/579 (86%), Gaps = 1/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+N SS
Sbjct: 109 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEEN-SSS 167
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 168 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 227
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 228 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 287
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 288 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 347
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 348 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 407
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 408 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 467
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 468 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 527
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 528 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 587
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 588 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 647
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDRY+
Sbjct: 648 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYV 686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/579 (73%), Positives = 502/579 (86%), Gaps = 2/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+ SS
Sbjct: 167 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEN--SSS 224
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 225 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 284
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 285 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 344
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 345 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 404
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 405 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 464
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 465 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 524
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 525 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 584
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 585 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 644
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 645 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 704
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDRY+
Sbjct: 705 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYV 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/589 (72%), Positives = 498/589 (84%), Gaps = 11/589 (1%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD LGPE+E+HGYPDGAKINFV+WS DG+ +AFS+R DEEDN SS
Sbjct: 162 MSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEEDN-SSS 220
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SP++ LNAVF +FVWV+NSTLL+ IPSSR D PKK +VP
Sbjct: 221 KLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKKPLVPS 280
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN+I R +LLKDEYDE LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 281 GPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPAVYTSM 340
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+L++S+HRPYS+ VPC RF +KV+VWTTDGK VRE+CDLP AEDIP+ +SV
Sbjct: 341 DPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPIAISSV 400
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMR+I+WRADKPSTLYW E QD GDA VEVSPRDIIYTQPAEP EGE+PEILHKLDLR
Sbjct: 401 RKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILHKLDLR 460
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ P SKDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 461 YGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGSPMLRR 520
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE YILLNG G T EGNIPFLDLFDIN GSKERIWES +EKY+E
Sbjct: 521 TPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEKEKYYE 580
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T V+L+ E D+ L++LK+LTSKESKTE TQY I WP KK QITNFPHPYP LASL
Sbjct: 581 TVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYPQLASL 640
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMIKYQR DGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 641 QKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 700
Query: 541 SGMTPTSSLIFLARR----------FAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ PTS+L++LARR FA+L+GP+IPIIGEGDK NDRY+
Sbjct: 701 AGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYV 749
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/579 (72%), Positives = 495/579 (85%), Gaps = 5/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD +LGPEKEVHGYPDGAKINFV+WS DG+ +AFS+RV EEDN SS
Sbjct: 107 MSFYTGIGIHQLMPDGTLGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDN-SSS 165
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SPD+ LNAVF +FVWV+NS+LL+ TIPSSR DPPKK VP
Sbjct: 166 KLRVWVANMETGQARPLFQSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPS 225
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN++ R +LLKDEYDE LFDYYTT+Q+VL SLDGTAK+ G PAVYT++
Sbjct: 226 GPKIQSNEQKNVVQVRTFQDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSM 285
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQ Y+LI+S+HRPYS+ VP RF +KV+VWTTDGK VRELCDLP AEDIP+ +SV
Sbjct: 286 DPSPDQNYLLISSIHRPYSFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSV 345
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G R+I+WRADKPSTLYW E QD GDA VEVSPRDI+YTQPAEP EGE+PEILHKLDLR
Sbjct: 346 RKGKRAINWRADKPSTLYWAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLR 405
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ + WCDDSLALV E+WYKT +TRTW++ PGSKD +PR+LFDR E+VYSDPGSPM+ R
Sbjct: 406 YGGIYWCDDSLALVYESWYKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRR 465
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LL G G TPEGNIPFLDLFDINTGSKERIWES++E+Y+E
Sbjct: 466 TPAGTYVIAKIKKENDEGTYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYE 525
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ E D+ L++L+ILTSKESKTE QY I WP KK+ QITNFPHPYP LASL
Sbjct: 526 TVVALMLDYEEGDLLLDRLQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASL 585
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPN+F
Sbjct: 586 QKEMIRYQRKDGVQLTATLYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKF 645
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ TS+L++ FA+L+GP+IPIIGEGD+ NDRY+
Sbjct: 646 AGIGSTSALLW----FAILSGPTIPIIGEGDEEANDRYV 680
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436423|ref|XP_004135992.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] gi|449507837|ref|XP_004163143.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/582 (71%), Positives = 500/582 (85%), Gaps = 4/582 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDRY+
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYV 753
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436421|ref|XP_004135991.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] gi|449507834|ref|XP_004163142.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/582 (71%), Positives = 500/582 (85%), Gaps = 4/582 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDRY+
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYV 753
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/579 (70%), Positives = 492/579 (84%), Gaps = 1/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH +LPD +LGPE E+HG+P+GAKINFV+WSPD + ++FS+RV+EED+ +S
Sbjct: 165 MSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEEDSNTS- 223
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KL VW+AD ETG+A+PLF+SPD+ LNAVF ++VWV+NSTLL+ TIPS+R PPKK +VP
Sbjct: 224 KLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKPLVPG 283
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKNII R +LLKDEYDE LFDYY T+QLVL SLDGT KDFG PA+YT++
Sbjct: 284 GPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAIYTSL 343
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD+KY++I SMHRPYS+ VPC RF +KV++W+ DGK VRE+CDLP AEDIP+ NSV
Sbjct: 344 DPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPITSNSV 403
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDIIY+QPAE EGE+P ILHKLDLR
Sbjct: 404 RKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHKLDLR 463
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLA V E+WYKT + +TW+V PGS+DV PR+LFDR E+VYSDPGSPM+ R
Sbjct: 464 YGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSPMLRR 523
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT +IAKIKK DE YI+LNG G TPEGN+PFLDLFDINTGSKERIWES++EKYFE
Sbjct: 524 TQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKEKYFE 583
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ L++LKIL SKESKTE TQY+ +SWP KK Q+TNFPHPYP LASL
Sbjct: 584 TVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQLASL 643
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGY+ S DGPLPCL W+YP ++KSKDAA QVRGSPNEF
Sbjct: 644 QKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGSPNEF 703
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ TS+L++LA+RFA+L+GP+IPIIGEG+ ND Y+
Sbjct: 704 AGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYV 742
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/579 (69%), Positives = 482/579 (83%), Gaps = 2/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDRY+
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYV 750
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/579 (69%), Positives = 483/579 (83%), Gaps = 2/579 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF+S DI LNA+F SFVW++NSTLL+ TIPSSR DPPKK +VP
Sbjct: 232 KPVVWVADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC R +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPST+YW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TAAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDRY+
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYV 750
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2275219|gb|AAB63841.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/576 (69%), Positives = 479/576 (83%), Gaps = 2/576 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND 576
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ ND
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEAND 747
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.798 | 0.593 | 0.282 | 1e-48 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.798 | 0.593 | 0.282 | 1e-48 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.0e-48, P = 1.0e-48
Identities = 140/496 (28%), Positives = 232/496 (46%)
Query: 85 LNAVFG-SFVWVNNSTLLI-FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
LN + W NN TLL F I ++ + V + PK + KN R +LL
Sbjct: 160 LNGTISLDYQWANNKTLLARFVI--AQDISASQPHVSISPKTKETSGKNSP-QRTYQDLL 216
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
K D+ LF TT+QL L L+G G P + SPD +Y+L + P+S +V
Sbjct: 217 KTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQITTPFSTQV 276
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
F +++ +G+L+ L E P +SV G R W + +TL + +A
Sbjct: 277 KYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAATLAFTKA 336
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322
D+GD+ + RD ++ +P ++ + + R + W ++ LAL+ E K
Sbjct: 337 LDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALITERNSKAQ 394
Query: 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382
Q R + + + L +R + Y D G G + ++ + + ++
Sbjct: 395 QIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QGAKTTGLI 452
Query: 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442
G+G TP+G+ PFL + T +W+S + +V V +NL+ L+++
Sbjct: 453 HYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LNLDPLQLI 503
Query: 443 TSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502
++ES TE +L+ K S + P +QK++I ++R DGVPL+ TLYLP
Sbjct: 504 INRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPLSGTLYLP 561
Query: 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562
Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A FAV
Sbjct: 562 ANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEGFAVFDKV 620
Query: 563 SIPIIGEGDKLPNDRY 578
S+PII +GDK ND +
Sbjct: 621 SMPIIAQGDKESNDTF 636
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.0e-48, P = 1.0e-48
Identities = 140/496 (28%), Positives = 232/496 (46%)
Query: 85 LNAVFG-SFVWVNNSTLLI-FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
LN + W NN TLL F I ++ + V + PK + KN R +LL
Sbjct: 160 LNGTISLDYQWANNKTLLARFVI--AQDISASQPHVSISPKTKETSGKNSP-QRTYQDLL 216
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
K D+ LF TT+QL L L+G G P + SPD +Y+L + P+S +V
Sbjct: 217 KTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQITTPFSTQV 276
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
F +++ +G+L+ L E P +SV G R W + +TL + +A
Sbjct: 277 KYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAATLAFTKA 336
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322
D+GD+ + RD ++ +P ++ + + R + W ++ LAL+ E K
Sbjct: 337 LDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALITERNSKAQ 394
Query: 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382
Q R + + + L +R + Y D G G + ++ + + ++
Sbjct: 395 QIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QGAKTTGLI 452
Query: 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442
G+G TP+G+ PFL + T +W+S + +V V +NL+ L+++
Sbjct: 453 HYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LNLDPLQLI 503
Query: 443 TSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502
++ES TE +L+ K S + P +QK++I ++R DGVPL+ TLYLP
Sbjct: 504 INRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPLSGTLYLP 561
Query: 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562
Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A FAV
Sbjct: 562 ANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEGFAVFDKV 620
Query: 563 SIPIIGEGDKLPNDRY 578
S+PII +GDK ND +
Sbjct: 621 SMPIIAQGDKESNDTF 636
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 595 595 0.00084 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 621 (66 KB)
Total size of DFA: 362 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 54.70u 0.11s 54.81t Elapsed: 00:00:24
Total cpu time: 54.70u 0.11s 54.81t Elapsed: 00:00:33
Start: Mon May 20 14:54:18 2013 End: Mon May 20 14:54:51 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.6891 | 0.9697 | 0.6151 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.89 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 99.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK10115 | 686 | protease 2; Provisional | 99.87 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.81 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.79 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.75 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.75 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.72 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.65 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.63 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.59 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.54 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 99.47 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.14 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.11 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.08 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.95 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.88 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.85 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.82 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.77 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.73 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.69 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.51 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.49 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.49 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.45 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.43 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.4 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.4 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.38 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.36 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.32 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.3 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.3 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.27 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.21 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.18 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.15 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.13 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.12 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.11 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.11 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.07 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 98.07 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.03 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.02 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.89 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.88 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.87 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.81 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.8 | |
| PTZ00421 | 493 | coronin; Provisional | 97.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.76 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.74 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.71 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.69 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.66 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.6 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 97.57 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.55 | |
| PTZ00420 | 568 | coronin; Provisional | 97.52 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.46 | |
| PTZ00421 | 493 | coronin; Provisional | 97.44 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.38 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.37 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.36 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.35 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.34 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.21 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.16 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.16 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.14 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.14 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.14 | |
| PRK10115 | 686 | protease 2; Provisional | 97.13 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.11 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 97.1 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.08 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.08 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.04 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.0 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 96.96 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 96.88 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.87 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 96.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 96.83 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.82 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 96.8 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.79 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.57 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.55 | |
| PTZ00420 | 568 | coronin; Provisional | 96.53 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.44 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.35 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.25 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.2 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.19 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 96.19 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.11 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 96.11 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.84 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 95.69 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 95.64 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 95.63 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 95.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.46 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 95.36 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.26 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.25 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 95.12 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.11 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 95.1 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.08 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 94.88 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 94.88 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 94.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 94.83 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.58 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 94.22 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 94.11 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.9 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 93.82 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 93.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 93.7 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 93.65 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.62 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 93.61 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.41 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 93.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.19 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 93.16 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 92.82 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 92.81 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 92.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 92.75 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 92.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 92.61 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 92.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 92.37 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 92.35 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 92.34 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 92.31 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 92.25 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 92.19 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 92.06 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 92.06 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 91.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 91.73 | |
| PRK10566 | 249 | esterase; Provisional | 91.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 91.55 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 91.42 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 91.41 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 91.3 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 91.16 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 91.01 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 90.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.15 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 90.03 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 89.95 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 89.67 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 89.55 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 89.4 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 89.31 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 88.96 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 88.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 88.65 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.39 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 88.39 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 87.44 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 87.43 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 87.25 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 87.12 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 86.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 86.6 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 86.54 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 86.44 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 86.05 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 85.99 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 84.66 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 84.64 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 84.31 | |
| PLN00021 | 313 | chlorophyllase | 84.19 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 84.04 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 84.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 83.86 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 83.78 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 83.59 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 83.42 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 83.25 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 82.22 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 82.01 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 81.91 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 81.29 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 81.26 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 80.12 |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=202.15 Aligned_cols=238 Identities=15% Similarity=0.113 Sum_probs=167.0
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCE--EEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
+.+.||+.|.. ++..++||. .......|+|||||++ ++|++.+ .+..+||++++++|+.++|+..
T Consensus 163 ~~~~l~~~d~d----G~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~ 229 (428)
T PRK01029 163 KQGELWSVDYD----GQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILAL 229 (428)
T ss_pred ccceEEEEcCC----CCCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecC
Confidence 35789999997 889999995 3335789999999998 5557765 4568999999999999999876
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
+. ....+.|||||+.|+|+... .| ..++|
T Consensus 230 ~g-----~~~~p~wSPDG~~Laf~s~~---------------------~g-------------------------~~di~ 258 (428)
T PRK01029 230 QG-----NQLMPTFSPRKKLLAFISDR---------------------YG-------------------------NPDLF 258 (428)
T ss_pred CC-----CccceEECCCCCEEEEEECC---------------------CC-------------------------Cccee
Confidence 65 34579999999999997421 01 01233
Q ss_pred E--EcC-C---CCeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC--CceEEEeccCCCC
Q 007620 161 L--GSL-D---GTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPA 230 (595)
Q Consensus 161 ~--~d~-~---g~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~l~~~~~~ 230 (595)
+ +++ . |++++|+... ....++|||||++|+|++.... ..+||++++. ++..+.++...
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-- 326 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-- 326 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC--
Confidence 3 233 2 3667777543 3357899999999999975322 2378888875 45566665431
Q ss_pred ccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCC
Q 007620 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (595)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg 310 (595)
.....+.|+|||+. |++... +.+ ...++++|+ .+++.+.|+........+.|+|||
T Consensus 327 -----------~~~~~p~wSPDG~~-Laf~~~-~~g--------~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 327 -----------RNSSCPAWSPDGKK-IAFCSV-IKG--------VRQICVYDL---ATGRDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred -----------CCccceeECCCCCE-EEEEEc-CCC--------CcEEEEEEC---CCCCeEEccCCCCCccceEECCCC
Confidence 11236899999985 666522 111 236788886 667888888665566789999999
Q ss_pred cEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 311 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 311 ~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
+.|++... ..+...||++|+++ ++.+.|+.
T Consensus 383 ~~L~f~~~-~~g~~~L~~vdl~~--g~~~~Lt~ 412 (428)
T PRK01029 383 LHLVYSAG-NSNESELYLISLIT--KKTRKIVI 412 (428)
T ss_pred CEEEEEEC-CCCCceEEEEECCC--CCEEEeec
Confidence 98887643 23456899999998 45566653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=200.79 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=171.8
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
|.+.||++|.. ++..+++|. .......|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 177 ~~~~l~~~d~d----g~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYD----GYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCC----CCCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 56789999997 778889984 33358899999999999998754 346899999999999999986654
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
....+.|||||+.|+|.... . ...+||++
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~---------------------~-------------------------g~~~I~~~ 272 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSK---------------------T-------------------------GSLNLYVM 272 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcC---------------------C-------------------------CCcEEEEE
Confidence 34679999999999996321 0 12468999
Q ss_pred cC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
|+ +++.++|+... ....+.|||||++|+|++.... ..+||++|++++..++++....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~----------- 331 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGS----------- 331 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCC-----------
Confidence 99 56888888654 4468999999999999985422 2389999999887777753211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
....+.|+|||+. |++... +. ....++++++ .+++.+.|+.. .....+.|||||+.+++... +
T Consensus 332 --~~~~~~~SpDG~~-Ia~~~~-~~--------g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~-~ 394 (429)
T PRK03629 332 --QNQDADVSSDGKF-MVMVSS-NG--------GQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSS-Q 394 (429)
T ss_pred --CccCEEECCCCCE-EEEEEc-cC--------CCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEc-C
Confidence 1235889999985 555421 11 1235777786 55677777743 33457999999999888764 2
Q ss_pred ccceEEEEEeCCCCCCCcEEEe
Q 007620 321 TSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 321 ~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.+...|+++++++ ..++.|.
T Consensus 395 ~~~~~l~~~~~~G--~~~~~l~ 414 (429)
T PRK03629 395 GMGSVLNLVSTDG--RFKARLP 414 (429)
T ss_pred CCceEEEEEECCC--CCeEECc
Confidence 3456799999987 3445553
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=202.88 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=100.9
Q ss_pred cccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCC
Q 007620 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (595)
Q Consensus 433 ~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y 511 (595)
.|+.+++.+++.++++..|+++|+++. ++..+++..+........+ ++|.|+|++.||.+|+|||++|++++++|+|
T Consensus 317 ~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y 394 (620)
T COG1506 317 GFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKY 394 (620)
T ss_pred EEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCC
Confidence 456688999999999999999999996 6667777776666655556 9999999999999999999999999998876
Q ss_pred CCcEEEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhh
Q 007620 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILS 582 (595)
Q Consensus 512 ~lP~vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~ 582 (595)
|+||++| |||++ +.....+++|.||++||+|++ |.+| |+..++..|++.+
T Consensus 395 --P~i~~~h--------------GGP~~~~~~~~~~~~q~~~~~G~~V~~----~n~R-GS~GyG~~F~~~~ 445 (620)
T COG1506 395 --PLIVYIH--------------GGPSAQVGYSFNPEIQVLASAGYAVLA----PNYR-GSTGYGREFADAI 445 (620)
T ss_pred --CEEEEeC--------------CCCccccccccchhhHHHhcCCeEEEE----eCCC-CCCccHHHHHHhh
Confidence 9999966 55552 222345678999999999999 5555 5555666665533
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=196.85 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=168.7
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCE-EEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
+..+||+.|.. +...++++. .+ ....|+|||||++ ++|++.. .+..+||++|+.+|+.++|+...
T Consensus 167 ~~~~l~~~d~d----g~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 167 KKSNIVLADYT----LTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred CcceEEEECCC----CCceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCC
Confidence 35789999986 667777873 33 5778999999997 6665543 23579999999999999998654
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ....+.|||||+.|+|+... . ...+||+
T Consensus 233 g-----~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~ 261 (419)
T PRK04043 233 G-----MLVVSDVSKDGSKLLLTMAP---------------------K-------------------------GQPDIYL 261 (419)
T ss_pred C-----cEEeeEECCCCCEEEEEEcc---------------------C-------------------------CCcEEEE
Confidence 3 34568899999999997321 0 1358999
Q ss_pred EcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 162 GSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 162 ~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
+++ .|+.++||... ....+.|||||++|+|++.... ..+||++|+++++.++++...
T Consensus 262 ~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g----------- 320 (419)
T PRK04043 262 YDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG----------- 320 (419)
T ss_pred EECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC-----------
Confidence 999 55889998654 3457899999999999986532 348999999999887775421
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEee
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....|+|||+. |++......... ......++++++ ++++.+.|+... ....|.|||||+.++|....
T Consensus 321 ----~~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 ----KNNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ----CcCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc
Confidence 123589999996 555532111000 011246888886 667888888753 44579999999988887533
Q ss_pred cccceEEEEEeCCCC
Q 007620 320 KTSQTRTWLVCPGSK 334 (595)
Q Consensus 320 ~~~~~~L~~~d~~~~ 334 (595)
.+...|+.+++++.
T Consensus 389 -~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 -GNQSALGIIRLNYN 402 (419)
T ss_pred -CCcEEEEEEecCCC
Confidence 45568999999983
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=200.37 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=170.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..+||++|.. ++..+++|.. ...+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 181 ~~~l~~~d~d----g~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g- 246 (435)
T PRK05137 181 IKRLAIMDQD----GANVRYLTDG--SSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPG- 246 (435)
T ss_pred ceEEEEECCC----CCCcEEEecC--CCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCC-
Confidence 5789999986 8888999843 3358899999999999999864 345899999999999999986654
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||++|
T Consensus 247 ----~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d 276 (435)
T PRK05137 247 ----MTFAPRFSPDGRKVVMSLSQ---------------------G-------------------------GNTDIYTMD 276 (435)
T ss_pred ----cccCcEECCCCCEEEEEEec---------------------C-------------------------CCceEEEEE
Confidence 35689999999999986321 0 135799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ .++.++|+... ....+.|||||++|+|++.... ..+||++|++++..+.++....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~------------ 334 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGG------------ 334 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCC------------
Confidence 9 55888888654 4457899999999999975432 2479999999988888764321
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++.. .+.+ ...+++++. +++..+.++.. .....+.|||||+.+++......
T Consensus 335 -~~~~~~~SpdG~~-ia~~~-~~~~--------~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 335 -RYSTPVWSPRGDL-IAFTK-QGGG--------QFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred -cccCeEECCCCCE-EEEEE-cCCC--------ceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 1235789999985 55542 1111 235777775 55555556543 35678999999998877653221
Q ss_pred c--ceEEEEEeCCCCCCCcEEE
Q 007620 322 S--QTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 322 ~--~~~L~~~d~~~~~~~~~~l 341 (595)
. ...||++|++++ ..+.|
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l 419 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREV 419 (435)
T ss_pred CCCcceEEEEECCCC--ceEEc
Confidence 1 258999999883 44555
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=189.72 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=95.7
Q ss_pred ccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 436 ~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
.+++.++++.++...|+++|.+|+.+++.+.|+..+.+..+...+.+|.+++++.||.+|+++|++|++....++. |+
T Consensus 370 ~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~--P~ 447 (686)
T PRK10115 370 PETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHN--PL 447 (686)
T ss_pred CCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCC--CE
Confidence 4567899999999999999999998888888998754444444459999999999999999988876654333333 99
Q ss_pred EEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHh
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLIL 581 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~ 581 (595)
||++|+ ||.. ....+....|+|+++||+|+. |++| |+.+++..|.+.
T Consensus 448 ll~~hG--------------g~~~~~~p~f~~~~~~l~~rG~~v~~----~n~R-Gs~g~G~~w~~~ 495 (686)
T PRK10115 448 LVYGYG--------------SYGASIDADFSFSRLSLLDRGFVYAI----VHVR-GGGELGQQWYED 495 (686)
T ss_pred EEEEEC--------------CCCCCCCCCccHHHHHHHHCCcEEEE----EEcC-CCCccCHHHHHh
Confidence 999874 3331 111122346899999999999 8887 788899988764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=190.67 Aligned_cols=234 Identities=15% Similarity=0.083 Sum_probs=167.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...||+.|.. +...++|+... ..+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 197 ~~~l~i~d~d----G~~~~~l~~~~--~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g- 262 (448)
T PRK04792 197 PYQLMIADYD----GYNEQMLLRSP--EPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPG- 262 (448)
T ss_pred ceEEEEEeCC----CCCceEeecCC--CcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCC-
Confidence 4678999886 67778888533 357899999999999999864 346899999999999988976553
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||++|
T Consensus 263 ----~~~~~~wSPDG~~La~~~~~---------------------~-------------------------g~~~Iy~~d 292 (448)
T PRK04792 263 ----INGAPRFSPDGKKLALVLSK---------------------D-------------------------GQPEIYVVD 292 (448)
T ss_pred ----CcCCeeECCCCCEEEEEEeC---------------------C-------------------------CCeEEEEEE
Confidence 34579999999999986321 0 135799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ +++.++|+... ....++|||||++|+|++.... ..+||++|+++++.+.++....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~------------ 350 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE------------ 350 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC------------
Confidence 9 56888887653 4457899999999999975432 2489999999888777752210
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++... .. ....++++++ ++++.+.++... ....+.|+|||+.+++... ..
T Consensus 351 -~~~~~~~SpDG~~-l~~~~~-~~--------g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~-~~ 414 (448)
T PRK04792 351 -QNLGGSITPDGRS-MIMVNR-TN--------GKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTT-YQ 414 (448)
T ss_pred -CCcCeeECCCCCE-EEEEEe-cC--------CceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEe-cC
Confidence 0124689999984 656521 11 1235777786 556777676432 3346899999998887653 23
Q ss_pred cceEEEEEeCCCCCCCcEEE
Q 007620 322 SQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l 341 (595)
+...||++++++ ...+.+
T Consensus 415 g~~~l~~~~~~G--~~~~~l 432 (448)
T PRK04792 415 GKQVLAAVSIDG--RFKARL 432 (448)
T ss_pred CceEEEEEECCC--CceEEC
Confidence 556799999977 344444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=188.23 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=165.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..||+.|.. +...++++... ..+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 176 ~~L~~~D~d----G~~~~~l~~~~--~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g-- 240 (427)
T PRK02889 176 YQLQISDAD----GQNAQSALSSP--EPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKG-- 240 (427)
T ss_pred cEEEEECCC----CCCceEeccCC--CCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 579999885 66778887433 358899999999999998854 345789999999999988876553
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|||||+.|+|.... + ...+||++|+
T Consensus 241 ---~~~~~~~SPDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 241 ---SNSAPAWSPDGRTLAVALSR---------------------D-------------------------GNSQIYTVNA 271 (427)
T ss_pred ---CccceEECCCCCEEEEEEcc---------------------C-------------------------CCceEEEEEC
Confidence 34689999999999986321 0 1357999999
Q ss_pred C-CCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 D-GTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 ~-g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+ ++.++|+... ....+.|||||++|+|++.... ..+||++++.++..+.++... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~ 328 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------S 328 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------C
Confidence 4 4778887643 3457899999999999875322 237899998887777665221 0
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+|||+. |++... +++ ...+++++. .+++.+.++... ....+.|+|||+.|+|.... .+
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~-~~g--------~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~-~g 393 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISR-VGG--------AFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQ-GG 393 (427)
T ss_pred CcCceEECCCCCE-EEEEEc-cCC--------cEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEec-CC
Confidence 1235789999985 555421 111 235788886 556777776542 34679999999998887543 35
Q ss_pred ceEEEEEeCCCCCCCcEEE
Q 007620 323 QTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l 341 (595)
...|+.+++++ ...+.+
T Consensus 394 ~~~l~~~~~~g--~~~~~l 410 (427)
T PRK02889 394 RSVLAAVSSDG--RIKQRL 410 (427)
T ss_pred CEEEEEEECCC--CceEEe
Confidence 56899999976 334444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=187.38 Aligned_cols=235 Identities=14% Similarity=0.082 Sum_probs=168.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|||+|.. ++..++|+.. ...+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 183 ~~~l~i~D~~----g~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g- 248 (433)
T PRK04922 183 RYALQVADSD----GYNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRG- 248 (433)
T ss_pred eEEEEEECCC----CCCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCC-
Confidence 4579999986 7788899853 3358899999999999998754 346799999999999988876543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|.... + ...+||+++
T Consensus 249 ----~~~~~~~SpDG~~l~~~~s~---------------------~-------------------------g~~~Iy~~d 278 (433)
T PRK04922 249 ----INGAPSFSPDGRRLALTLSR---------------------D-------------------------GNPEIYVMD 278 (433)
T ss_pred ----CccCceECCCCCEEEEEEeC---------------------C-------------------------CCceEEEEE
Confidence 34578999999999986321 0 125799999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ +|+.++|+... ....++|||||++|+|++.... ..+||++|+.+++.+.++....
T Consensus 279 ~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~------------ 336 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN------------ 336 (433)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC------------
Confidence 9 56888887643 3357899999999999975422 2379999998887777653210
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+|||+. |++... +. ....++++++ .+++.+.|+... ....+.|||||+.+++.... .
T Consensus 337 -~~~~~~~SpDG~~-Ia~~~~-~~--------~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~ 400 (433)
T PRK04922 337 -YNARASVSPDGKK-IAMVHG-SG--------GQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATRE-G 400 (433)
T ss_pred -CccCEEECCCCCE-EEEEEC-CC--------CceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEec-C
Confidence 1235799999985 655421 11 1235777786 556777776543 34578999999988776533 3
Q ss_pred cceEEEEEeCCCCCCCcEEEe
Q 007620 322 SQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~ 342 (595)
+...||.+++++ ...+.|.
T Consensus 401 g~~~L~~~~~~g--~~~~~l~ 419 (433)
T PRK04922 401 GRGVLAAVSTDG--RVRQRLV 419 (433)
T ss_pred CceEEEEEECCC--CceEEcc
Confidence 556899999987 3445553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-19 Score=186.30 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=163.7
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|++.|.. ++..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 180 ~l~~~d~~----g~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g--- 243 (430)
T PRK00178 180 TLQRSDYD----GARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEG--- 243 (430)
T ss_pred EEEEECCC----CCCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCC---
Confidence 48888886 777888874 33357899999999999999754 345799999999999999976553
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
....+.|||||+.|+|.... + ...+||++|+
T Consensus 244 --~~~~~~~SpDG~~la~~~~~---------------------~-------------------------g~~~Iy~~d~~ 275 (430)
T PRK00178 244 --LNGAPAWSPDGSKLAFVLSK---------------------D-------------------------GNPEIYVMDLA 275 (430)
T ss_pred --CcCCeEECCCCCEEEEEEcc---------------------C-------------------------CCceEEEEECC
Confidence 34579999999999986321 0 1257999999
Q ss_pred CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 165 DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 165 ~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
+++.++|+... ....+.|||||++|+|++.... ..+||++++.+++.++++... ..
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NY 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 55788887643 4457899999999999975432 247999999888777765321 01
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
...+.|+|||+. |++.... .+ ...++++|+ .+++.+.|+... ....+.|||||+.+++... +.+.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~-~~--------~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~-~~g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQ-DG--------NFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATR-QQGR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEcc-CC--------ceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEe-cCCc
Confidence 124789999985 6665221 11 235777786 556777777543 3346899999999888753 3355
Q ss_pred eEEEEEeCCC
Q 007620 324 TRTWLVCPGS 333 (595)
Q Consensus 324 ~~L~~~d~~~ 333 (595)
..|+.+++++
T Consensus 398 ~~l~~~~~~g 407 (430)
T PRK00178 398 GVLMLVSING 407 (430)
T ss_pred eEEEEEECCC
Confidence 6899999987
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=181.26 Aligned_cols=264 Identities=16% Similarity=0.162 Sum_probs=170.2
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE--EecCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF--TIPSSRRDP 112 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~--~~~~~~~~~ 112 (595)
.+.++ +++|||+......+. .....+||++|.+++.+++||.... ...+++|||||+.++| ++..
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~-~~~~~~l~~~d~dG~~~~~lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~----- 207 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDT-ELKQGELWSVDYDGQNLRPLTQEHS-----LSITPTWMHIGSGFPYLYVSYK----- 207 (428)
T ss_pred CCccc--cCEEEEEEeeCCccc-ccccceEEEEcCCCCCceEcccCCC-----CcccceEccCCCceEEEEEEcc-----
Confidence 45555 899999987632110 0235799999999999999987654 3468999999987444 4210
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~ 190 (595)
. ...+||+.++ .|+.++|+.- .....+.|||||++|+
T Consensus 208 ----------------~-------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~La 246 (428)
T PRK01029 208 ----------------L-------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLA 246 (428)
T ss_pred ----------------C-------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEE
Confidence 0 1368999999 5578888753 3344789999999999
Q ss_pred EEEcccCccccccCcccceeEEE--EcCCC---ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~--~d~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+..... ..++++ +++.+ +..++++.... .....+.|+|||+. |++....+
T Consensus 247 f~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~-Laf~s~~~- 302 (428)
T PRK01029 247 FISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTR-LVFVSNKD- 302 (428)
T ss_pred EEECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCE-EEEEECCC-
Confidence 9975322 124555 45543 45555653211 01235899999985 66652211
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~ 345 (595)
....+|++++ .-.+++.+.++........+.|||||+.|++.... .+..+|+++|+++ ++.+.|+...
T Consensus 303 --------g~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~--g~~~~Lt~~~ 370 (428)
T PRK01029 303 --------GRPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLAT--GRDYQLTTSP 370 (428)
T ss_pred --------CCceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCC--CCeEEccCCC
Confidence 1235777664 11234566676655566789999999988876532 3456899999998 4566665332
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeec
Q 007620 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (595)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (595)
... ..+.|+|||+.|+|.....+ ...+ +.+|+.+++.++|+..
T Consensus 371 ~~~-------~~p~wSpDG~~L~f~~~~~g--~~~L----------------~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 371 ENK-------ESPSWAIDSLHLVYSAGNSN--ESEL----------------YLISLITKKTRKIVIG 413 (428)
T ss_pred CCc-------cceEECCCCCEEEEEECCCC--CceE----------------EEEECCCCCEEEeecC
Confidence 110 12899999999988764321 2233 3568877877777643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=181.87 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=163.8
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
.++|||++.....+ ....+||++|.+++..+++|.... .+..+.|||||+.|+|....
T Consensus 165 ~~~iafv~~~~~~~---~~~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~-------------- 222 (435)
T PRK05137 165 DTRIVYVAESGPKN---KRIKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYA-------------- 222 (435)
T ss_pred CCeEEEEEeeCCCC---CcceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCCEEEEEEec--------------
Confidence 56899998753110 125799999999989999986654 46789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++++ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 223 --------~------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 223 --------N------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred --------C------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 0 1357899999 5677777643 34457899999999999865322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|++++..++|+..+.. ...+.|+|||+. |++... .. ....+|
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~-i~f~s~-~~--------g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQ-IVFESD-RS--------GSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCE-EEEEEC-CC--------CCCeEE
Confidence 34899999999988888765321 235899999985 655421 11 124688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec-ccccccCCCCCCCe
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMM 358 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~ 358 (595)
++++ ++++.+.++...+.+..+.|||||+.+++... ..+..+|+++|++++ ..+.+... ... .+
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~-~~~~~~i~~~d~~~~--~~~~lt~~~~~~---------~p 382 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ-GGGQFSIGVMKPDGS--GERILTSGFLVE---------GP 382 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEc-CCCceEEEEEECCCC--ceEeccCCCCCC---------CC
Confidence 8886 66678888766666778999999998887653 234468999999873 44555432 112 28
Q ss_pred eeCCCCCEEEEEeee
Q 007620 359 TRTSTGTNVIAKIKK 373 (595)
Q Consensus 359 ~~~~dg~~l~~~~~~ 373 (595)
.|+|||+.|++....
T Consensus 383 ~~spDG~~i~~~~~~ 397 (435)
T PRK05137 383 TWAPNGRVIMFFRQT 397 (435)
T ss_pred eECCCCCEEEEEEcc
Confidence 999999999887653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=174.90 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=161.5
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
++|||+...... ....+||++|.+++..+++|.... .+..+.|||||+.|+|+...
T Consensus 164 ~riayv~~~~~~----~~~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~--------------- 219 (429)
T PRK03629 164 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFE--------------- 219 (429)
T ss_pred CeEEEEEeeCCC----CcceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEec---------------
Confidence 789999875321 346799999999988899987554 46789999999999997321
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccc
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~ 200 (595)
+ ...+||++++ .|+.++|+.. .....+.|||||++|+|+.....
T Consensus 220 -------~------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 220 -------S------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred -------C------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 0 1246888888 5678887643 33457899999999999864321
Q ss_pred cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 201 ~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
..+||++|+++++.++++.... ....+.|+|||+. |++... .. ....+|.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~-I~f~s~-~~--------g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQN-LAYTSD-QA--------GRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCE-EEEEeC-CC--------CCceEEE
Confidence 2379999999988888765431 1246899999985 655521 11 1236888
Q ss_pred ccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeee
Q 007620 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (595)
+++ ++++.+.++........+.|||||+.+++... ..+..+|+++|+++ ++.+.|+... .+ ..+.|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~--g~~~~Lt~~~-~~-------~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLAT--GGVQVLTDTF-LD-------ETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCC--CCeEEeCCCC-CC-------CCceE
Confidence 786 66677777654445567999999998877643 23445899999988 4566665321 11 12789
Q ss_pred CCCCCEEEEEeee
Q 007620 361 TSTGTNVIAKIKK 373 (595)
Q Consensus 361 ~~dg~~l~~~~~~ 373 (595)
+|||+.|++...+
T Consensus 382 SpDG~~i~~~s~~ 394 (429)
T PRK03629 382 APNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEcC
Confidence 9999999988754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=175.47 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=157.7
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|||.|.. ++..++|+.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++....
T Consensus 183 ~~~i~i~d~d----g~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g- 248 (429)
T PRK01742 183 PYEVRVADYD----GFNQFIVNRS--SQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRG- 248 (429)
T ss_pred eEEEEEECCC----CCCceEeccC--CCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCC-
Confidence 4689999986 6667778742 3358899999999999998753 345789999999998888865543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|++.... +| ..+||++|
T Consensus 249 ----~~~~~~wSPDG~~La~~~~~---------------------~g-------------------------~~~Iy~~d 278 (429)
T PRK01742 249 ----HNGAPAFSPDGSRLAFASSK---------------------DG-------------------------VLNIYVMG 278 (429)
T ss_pred ----ccCceeECCCCCEEEEEEec---------------------CC-------------------------cEEEEEEE
Confidence 23579999999999996311 01 24689999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ .++.++|+... ....+.|||||++|+|++.... ..+||.++..++..+.+...
T Consensus 279 ~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~~-------------- 334 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGGR-------------- 334 (429)
T ss_pred CCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecCC--------------
Confidence 8 45788887654 4458999999999999975432 23788888887766655211
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+ ..+.|+|||+. |++.. .+.++++|+ .+++.+.++.. .....+.|+|||+.+++... +.
T Consensus 335 -~-~~~~~SpDG~~-ia~~~-------------~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g 393 (429)
T PRK01742 335 -G-YSAQISADGKT-LVMIN-------------GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSST-QG 393 (429)
T ss_pred -C-CCccCCCCCCE-EEEEc-------------CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEc-CC
Confidence 1 23679999984 55541 123555675 44566555532 23467899999999888753 23
Q ss_pred cceEEEEEeCCCCCCCcEEEe
Q 007620 322 SQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~ 342 (595)
....|+++++++ ...+.|.
T Consensus 394 ~~~~l~~~~~~G--~~~~~l~ 412 (429)
T PRK01742 394 LGKVLQLVSADG--RFKARLP 412 (429)
T ss_pred CceEEEEEECCC--CceEEcc
Confidence 334566777776 3445553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=175.26 Aligned_cols=207 Identities=11% Similarity=0.146 Sum_probs=148.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.++||++|+. +|+.++|+.... ....|.|||||++|+|+... .+..+||++++++++.++||....
T Consensus 212 ~~~Iyv~dl~----tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~-------~g~~~Iy~~dl~~g~~~~LT~~~~- 277 (419)
T PRK04043 212 KPTLYKYNLY----TGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAP-------KGQPDIYLYDTNTKTLTQITNYPG- 277 (419)
T ss_pred CCEEEEEECC----CCcEEEEecCCC--cEEeeEECCCCCEEEEEEcc-------CCCcEEEEEECCCCcEEEcccCCC-
Confidence 3689999997 899999995333 36679999999999999865 356899999999999999987653
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|+|++.. + ...+||+++
T Consensus 278 ----~d~~p~~SPDG~~I~F~Sdr----------------------~------------------------g~~~Iy~~d 307 (419)
T PRK04043 278 ----IDVNGNFVEDDKRIVFVSDR----------------------L------------------------GYPNIFMKK 307 (419)
T ss_pred ----ccCccEECCCCCEEEEEECC----------------------C------------------------CCceEEEEE
Confidence 23478999999999997421 0 135899999
Q ss_pred C-CCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 164 ~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+ .|+.++|+..+.. ...|||||++|+|+....... ......+|+++|++++..+.|+....
T Consensus 308 l~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~----~~~~~~~I~v~d~~~g~~~~LT~~~~------------- 369 (419)
T PRK04043 308 LNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNE----FGKNTFNLYLISTNSDYIRRLTANGV------------- 369 (419)
T ss_pred CCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcc----cCCCCcEEEEEECCCCCeEECCCCCC-------------
Confidence 9 5588888764322 358999999999997543110 00012589999999998888876421
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceee
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW 306 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~w 306 (595)
...+.|+|||+. |++... .+ ....++.+++ +|.....|....+.+..|.|
T Consensus 370 -~~~p~~SPDG~~-I~f~~~-~~--------~~~~L~~~~l---~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 370 -NQFPRFSSDGGS-IMFIKY-LG--------NQSALGIIRL---NYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred -cCCeEECCCCCE-EEEEEc-cC--------CcEEEEEEec---CCCeeEEeecCCCccCCCCC
Confidence 125899999985 666532 11 2335777776 66455556555566667766
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-17 Score=169.00 Aligned_cols=230 Identities=17% Similarity=0.149 Sum_probs=160.1
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
..+|||++..... ....+||++|.++...+++|.... .+..+.|||||+.|+|+...
T Consensus 182 ~~riayv~~~~~~----~~~~~l~i~d~dG~~~~~l~~~~~-----~~~~p~wSPDG~~La~~s~~-------------- 238 (448)
T PRK04792 182 LTRIAYVVVNDKD----KYPYQLMIADYDGYNEQMLLRSPE-----PLMSPAWSPDGRKLAYVSFE-------------- 238 (448)
T ss_pred cCEEEEEEeeCCC----CCceEEEEEeCCCCCceEeecCCC-----cccCceECCCCCEEEEEEec--------------
Confidence 3688998765311 224689999999888888987665 56789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++|+ .|+.++|+... ....+.|||||++|+|+.....
T Consensus 239 -------~-------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-- 284 (448)
T PRK04792 239 -------N-------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-- 284 (448)
T ss_pred -------C-------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC--
Confidence 0 1357999999 56777776533 3347899999999999864322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|+++++.+.++.... ....+.|+|||+. |++.... .....+|
T Consensus 285 --------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~-I~f~s~~---------~g~~~Iy 333 (448)
T PRK04792 285 --------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKS-LIFTSER---------GGKPQIY 333 (448)
T ss_pred --------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCE-EEEEECC---------CCCceEE
Confidence 3589999999988888765421 1235889999985 5554211 1124688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
++++ .+++.+.++........+.|||||+.+++... ..+..+||++|+++ ++.+.|+...... .+.
T Consensus 334 ~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~--g~~~~lt~~~~d~--------~ps 399 (448)
T PRK04792 334 RVNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQDLET--GAMQVLTSTRLDE--------SPS 399 (448)
T ss_pred EEEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEe-cCCceEEEEEECCC--CCeEEccCCCCCC--------Cce
Confidence 8886 55677777643333456899999998877643 23456899999988 4556665322111 168
Q ss_pred eCCCCCEEEEEeee
Q 007620 360 RTSTGTNVIAKIKK 373 (595)
Q Consensus 360 ~~~dg~~l~~~~~~ 373 (595)
|+|||+.|++....
T Consensus 400 ~spdG~~I~~~~~~ 413 (448)
T PRK04792 400 VAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-17 Score=168.58 Aligned_cols=226 Identities=17% Similarity=0.210 Sum_probs=157.4
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
.+|||++.. .+..+||++|.++...++++.... .+..+.|||||+.|+|....
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~--------------- 216 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFE--------------- 216 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCC-----CcccceEcCCCCEEEEEEcc---------------
Confidence 679998753 346799999998878888876554 46789999999999997321
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccc
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~ 200 (595)
. ...+||++|+ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 217 -------~------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 217 -------S------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred -------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 0 1357999999 5677777643 34457899999999999865432
Q ss_pred cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 201 ~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
..+||++|+.++..++++..... ...+.|+|||+. |++.. +. .....+|.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-l~f~s--~~-------~g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRS-IYFTS--DR-------GGAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCE-EEEEe--cC-------CCCcEEEE
Confidence 35899999998887777653211 235789999985 55542 11 11236777
Q ss_pred ccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeee
Q 007620 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (595)
+++ .+++.+.++........+.|||||+.+++.... .+..+|+++|+.++ +.+.++..... ..+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g--~~~~lt~~~~~--------~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATG--QVTALTDTTRD--------ESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCC--CeEEccCCCCc--------cCceE
Confidence 775 555666665433334578999999988876532 34458999999884 45666532111 12799
Q ss_pred CCCCCEEEEEeee
Q 007620 361 TSTGTNVIAKIKK 373 (595)
Q Consensus 361 ~~dg~~l~~~~~~ 373 (595)
+|||+.|++....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-17 Score=169.14 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=161.3
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCC
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~ 120 (595)
-.++|||++.....+ +...+||++|.+++..++++.... .+..+.|||||+.|+|+....
T Consensus 161 f~~~ia~v~~~~~~~---~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERFSV---NTRYTLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCCCC---CcceEEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCC------------
Confidence 456899987643110 235689999999888888876554 456899999999999973210
Q ss_pred CCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCc
Q 007620 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPY 198 (595)
Q Consensus 121 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~ 198 (595)
...+||++++ +|+.++|+... ....+.|||||++|+|+.....
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1357999999 56888887533 4447899999999999865332
Q ss_pred cccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceE
Q 007620 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (595)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~ 278 (595)
..+||++|+.++..++++..... ...+.|+|||+. |++.... .....+
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~---------~g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDR---------GGKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECC---------CCCceE
Confidence 34899999999888887654311 235789999985 6554211 112367
Q ss_pred EeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCe
Q 007620 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (595)
Q Consensus 279 ~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (595)
|.+++ .+++.+.++........+.|||||+.+++.... .+..+|+++|+++ ++.+.|+...... .+
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t--g~~~~lt~~~~~~--------~p 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR--GSVRILTDTSLDE--------SP 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCC--CCEEEccCCCCCC--------Cc
Confidence 88786 556777766433345678999999988876532 2456899999998 4556665432111 17
Q ss_pred eeCCCCCEEEEEeee
Q 007620 359 TRTSTGTNVIAKIKK 373 (595)
Q Consensus 359 ~~~~dg~~l~~~~~~ 373 (595)
.|+|||+.+++....
T Consensus 380 ~~spdg~~i~~~~~~ 394 (430)
T PRK00178 380 SVAPNGTMLIYATRQ 394 (430)
T ss_pred eECCCCCEEEEEEec
Confidence 899999999988754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-17 Score=169.55 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
+++|||++..... + ....+||++|.+++.+++||.... .+..+.|||||+.|+|+...
T Consensus 167 ~~~ia~v~~~~~~-~--~~~~~l~i~D~~g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~-------------- 224 (433)
T PRK04922 167 WTRIAYVTVSGAG-G--AMRYALQVADSDGYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFE-------------- 224 (433)
T ss_pred cceEEEEEEeCCC-C--CceEEEEEECCCCCCceEeecCCC-----ccccccCCCCCCEEEEEecC--------------
Confidence 5689998865321 0 235689999998888999986654 46789999999999997321
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
+ ...+||++++ .|+.++|+.. .....+.|||||++|+|+.....
T Consensus 225 --------~------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 225 --------R------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred --------C------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 0 1357899999 5677777643 33447899999999998864322
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|+.+++.++++..... ...+.|+|||+. |++.. +. .....+|
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~-l~f~s--d~-------~g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKS-IYFTS--DR-------GGRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEE--CC-------CCCceEE
Confidence 34899999998888887654211 235799999985 55542 11 1123688
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
++++ .+++.+.++........+.|||||+.+++... +.+..+|+++|+++ ++.+.|+..... ..+.
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~--g~~~~Lt~~~~~--------~~p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLST--GSVRTLTPGSLD--------ESPS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCC--CCeEECCCCCCC--------CCce
Confidence 8786 55677766644444557999999998877643 23445899999988 455666532211 1178
Q ss_pred eCCCCCEEEEEeee
Q 007620 360 RTSTGTNVIAKIKK 373 (595)
Q Consensus 360 ~~~dg~~l~~~~~~ 373 (595)
|++||+.+++....
T Consensus 386 ~spdG~~i~~~s~~ 399 (433)
T PRK04922 386 FAPNGSMVLYATRE 399 (433)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888754
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=159.55 Aligned_cols=307 Identities=15% Similarity=0.163 Sum_probs=183.6
Q ss_pred CceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
.+..++||+|+. +++.++|+.. ......+.|||||++|||+.. ++||+.++.+++.++||...
T Consensus 20 s~~~~y~i~d~~----~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 20 SFKGDYYIYDIE----TGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEEETT----TTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--
T ss_pred ccceeEEEEecC----CCceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEecccc
Confidence 356789999998 8999999842 346899999999999999973 68999999999999999865
Q ss_pred Ccc-ccc------------cccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc--ccCcC
Q 007620 82 DIC-LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL--LKDEY 146 (595)
Q Consensus 82 ~~~-~~~------------~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~ 146 (595)
... .++ ....+.|||||+.|+|...+++.... -........+. .+... ++++.
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~-----~yp~~~~~~YPk 150 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDS-----QYPEVESIRYPK 150 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTE-----SS-EEEEEE--B
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccc-----cCCcccccccCC
Confidence 221 111 12378899999999997654433210 00000000000 00000 12221
Q ss_pred CccceEEeecceEEEEcC-CCCeeecCC------CC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 147 DESLFDYYTTAQLVLGSL-DGTAKDFGT------PA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 147 ~~~~~~~~~~~~l~~~d~-~g~~~~lt~------~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
.+... ....|+++++ +++...+.. .. +...+.|++|++.|++...+|... ...+.++|..+
T Consensus 151 --~G~~n-p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~t 219 (353)
T PF00930_consen 151 --AGDPN-PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDAST 219 (353)
T ss_dssp --TTS----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECT
T ss_pred --CCCcC-CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCC
Confidence 11111 3578999999 555444321 22 556899999999888888776531 23555666554
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~ 298 (595)
++.+.+.... ...|. +
T Consensus 220 g~~~~~~~e~-----------------~~~Wv-------------------------------~---------------- 235 (353)
T PF00930_consen 220 GETRVVLEET-----------------SDGWV-------------------------------D---------------- 235 (353)
T ss_dssp TTCEEEEEEE-----------------SSSSS-------------------------------S----------------
T ss_pred CceeEEEEec-----------------CCcce-------------------------------e----------------
Confidence 4332221000 00000 0
Q ss_pred ccccceeec-CCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc--cccccCCCCCCCeeeCCCCCEEEEEeeecC
Q 007620 299 LRFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (595)
Q Consensus 299 ~~~~~~~ws-pDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 375 (595)
....+.|. +++..++.... +++..|||+++.++ +.++.|+..+ +.+ .+.|+++++.|||.+....
T Consensus 236 -~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V~~--------i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 236 -VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEVTS--------ILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp -SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-EEE--------EEEEECTSSEEEEEESSGG
T ss_pred -eecccccccCCCCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceeecc--------cceEcCCCCEEEEEecCCC
Confidence 01223333 66665554433 56788999999998 4567776443 322 1788899999999886532
Q ss_pred CcccEEEEecCCCCCCCCcceeEeeecC-CCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcc
Q 007620 376 DEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (595)
Q Consensus 376 ~~~~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~ 452 (595)
..... |++++++ +++.++|++..... . ...||+++++++.+.++++.|+
T Consensus 304 p~~r~----------------lY~v~~~~~~~~~~LT~~~~~~-----~-------~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 304 PGERH----------------LYRVSLDSGGEPKCLTCEDGDH-----Y-------SASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp TTSBE----------------EEEEETTETTEEEESSTTSSTT-----E-------EEEE-TTSSEEEEEEESSSSCE
T ss_pred CCceE----------------EEEEEeCCCCCeEeccCCCCCc-----e-------EEEECCCCCEEEEEEcCCCCCC
Confidence 22223 4577888 88888998765431 0 1468999999999999999885
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=145.68 Aligned_cols=379 Identities=16% Similarity=0.198 Sum_probs=206.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEec-ccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.+||.++|+ +|+.++||. .-.-+.+|++||||++|||++-. +. +....+||+++.++|++++||....
T Consensus 59 DdlWe~slk----~g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~~s----s~~taDly~v~~e~Ge~kRiTyfGr- 127 (668)
T COG4946 59 DDLWEYSLK----DGKPLRITS--GLGVVNNPKFSPDGRKVAFSRVMLGS----SLQTADLYVVPSEDGEAKRITYFGR- 127 (668)
T ss_pred hHHHHhhhc----cCCeeEEec--ccceeccccCCCCCcEEEEEEEEecC----CCccccEEEEeCCCCcEEEEEEecc-
Confidence 579999998 899999995 33368999999999999995433 21 1346789999999999999998743
Q ss_pred ccccccc-ceEEecCCcEEEEEec-CC---CCCC-------CCccccCCCCeeeecC-cccccccccccccccCcCC---
Q 007620 84 CLNAVFG-SFVWVNNSTLLIFTIP-SS---RRDP-------PKKTMVPLGPKIQSNE-QKNIIISRMTDNLLKDEYD--- 147 (595)
Q Consensus 84 ~~~~~~~-~~~Wspdg~~l~~~~~-~~---~~~~-------~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~--- 147 (595)
.++ -..|+|||+.|+.+-. .. ..++ .+...++.||...... +|.....|...+ ++++..
T Consensus 128 ----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntyd-LP~WK~YkG 202 (668)
T COG4946 128 ----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYD-LPHWKGYKG 202 (668)
T ss_pred ----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCccc-CcccccccC
Confidence 344 4569999999887611 11 1111 0112344454332211 121111111111 010000
Q ss_pred ------------ccce-------------------EE-----eecceEEEEcCCC-CeeecCCCC-eeeeeEECCCCCeE
Q 007620 148 ------------ESLF-------------------DY-----YTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 148 ------------~~~~-------------------~~-----~~~~~l~~~d~~g-~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
+..| .| ....+||.+|++| ..++-|.-. ++ .-..+.||++|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY-~R~~nsDGkrI 281 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYY-PRNANSDGKRI 281 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhcc-ccccCCCCcEE
Confidence 0000 00 0235666666666 455544432 22 22457799999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEecc-CCCCcc--CCccccccc--------cCC------C--Cceee
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPAED--IPVCYNSVR--------EGM------R--SISWR 250 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~-~~~~~~--~~~~~~~~~--------~~~------~--~~~ws 250 (595)
+|... .+||++|.++.+.+.|.= +|+... ++..++-.+ .|. | .+...
T Consensus 282 vFq~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 282 VFQNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred EEecC--------------CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 99853 489999998887776632 244311 111110000 000 0 00000
Q ss_pred cCC--------CeeEEEEEeecCCCcc-cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 251 ADK--------PSTLYWVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 251 pdg--------~~~l~~~~~~d~~~~~-~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+.+ +..+.+...+.....- .-....+.+-+++. .|++.+.+...-+.+..+..|+||+.++...
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---- 420 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---- 420 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----
Confidence 000 0011111111100000 00122345666675 6667777766667778889999999755542
Q ss_pred cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeee
Q 007620 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 401 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d 401 (595)
.+..||++|+++ ++++.+ +.+-...+.+ +.|+|+++.+++.... + .|. + .+..+|
T Consensus 421 dr~el~vididn--gnv~~i-dkS~~~lItd-----f~~~~nsr~iAYafP~----g--y~t---------q--~Iklyd 475 (668)
T COG4946 421 DRFELWVIDIDN--GNVRLI-DKSEYGLITD-----FDWHPNSRWIAYAFPE----G--YYT---------Q--SIKLYD 475 (668)
T ss_pred CceEEEEEEecC--CCeeEe-cccccceeEE-----EEEcCCceeEEEecCc----c--eee---------e--eEEEEe
Confidence 345899999999 566655 3332222322 8999999998876521 1 111 0 133457
Q ss_pred cCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCc-ceEEEEe
Q 007620 402 INTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI-TQYHILS 458 (595)
Q Consensus 402 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p-~~l~~~d 458 (595)
+.+++.-.+++... ++. ..+|.+|+++|+|.+...-.| ++-++++
T Consensus 476 m~~~Kiy~vTT~ta---~Df---------sPaFD~d~ryLYfLs~RsLdPs~Drv~fn 521 (668)
T COG4946 476 MDGGKIYDVTTPTA---YDF---------SPAFDPDGRYLYFLSARSLDPSNDRVIFN 521 (668)
T ss_pred cCCCeEEEecCCcc---ccc---------CcccCCCCcEEEEEeccccCCCCCeeEEE
Confidence 77777776654321 111 246888999998887654444 3344444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=157.84 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=157.8
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...||++|.. ++..++|+.. ......|.|||||++|||+... .+..+||++++++|+.++++....
T Consensus 169 ~~~l~~~d~~----g~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 169 RYELQVADYD----GANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred cceEEEEcCC----CCCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCC-
Confidence 4579999886 7788889842 2247789999999999998754 345789999999998888765443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|+|||+.|+|.... + ...+||+++
T Consensus 235 ----~~~~~~~spDg~~l~~~~~~---------------------~-------------------------~~~~i~~~d 264 (417)
T TIGR02800 235 ----MNGAPAFSPDGSKLAVSLSK---------------------D-------------------------GNPDIYVMD 264 (417)
T ss_pred ----CccceEECCCCCEEEEEECC---------------------C-------------------------CCccEEEEE
Confidence 34578999999999886311 0 124688899
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ ++..++|+... ....+.|+|||++|+|++.... ..+||++|+.+++.+.+....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~------------- 321 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG------------- 321 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------
Confidence 8 55777776543 3346799999999999875322 237999999887776665321
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
.....+.|+|||+. |++.. .+. ....++++++ .++..+.+... .....+.|+|||..|++.... .
T Consensus 322 ~~~~~~~~spdg~~-i~~~~-~~~--------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~-~ 386 (417)
T TIGR02800 322 GYNASPSWSPDGDL-IAFVH-REG--------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTR-G 386 (417)
T ss_pred CCccCeEECCCCCE-EEEEE-ccC--------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeC-C
Confidence 11235789999984 55542 111 1236777786 44455555533 234568999999987776532 3
Q ss_pred cceEEEEEeCCC
Q 007620 322 SQTRTWLVCPGS 333 (595)
Q Consensus 322 ~~~~L~~~d~~~ 333 (595)
+...|++++.++
T Consensus 387 ~~~~l~~~~~~g 398 (417)
T TIGR02800 387 GRGVLGLVSTDG 398 (417)
T ss_pred CcEEEEEEECCC
Confidence 445788888776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-14 Score=150.26 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=156.6
Q ss_pred CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCC
Q 007620 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (595)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (595)
+++|||++.+... ....+||++|.++...++||.... .+..+.|||||+.|+|+....
T Consensus 168 ~~ria~v~~~~~~----~~~~~i~i~d~dg~~~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKNGG----SQPYEVRVADYDGFNQFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEcCC----CceEEEEEECCCCCCceEeccCCC-----ccccceEcCCCCEEEEEEecC-------------
Confidence 6899999875321 224789999999888888876544 467899999999999973210
Q ss_pred CeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCcc
Q 007620 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
...+||++|+ +|+.+.++.. .....++|||||++|+++.....
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1356888998 5666666532 23347899999999999864221
Q ss_pred ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEE
Q 007620 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (595)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (595)
..+||++|++++.
T Consensus 271 --------~~~Iy~~d~~~~~----------------------------------------------------------- 283 (429)
T PRK01742 271 --------VLNIYVMGANGGT----------------------------------------------------------- 283 (429)
T ss_pred --------cEEEEEEECCCCC-----------------------------------------------------------
Confidence 1234444444332
Q ss_pred eccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCee
Q 007620 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (595)
Q Consensus 280 ~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (595)
.+.++........+.|||||+.+++... ..+..+||.++..++ ..+.+ ..... .+.
T Consensus 284 -----------~~~lt~~~~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~~--~~~~l-~~~~~---------~~~ 339 (429)
T PRK01742 284 -----------PSQLTSGAGNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASGG--GASLV-GGRGY---------SAQ 339 (429)
T ss_pred -----------eEeeccCCCCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCCC--CeEEe-cCCCC---------Ccc
Confidence 2233322233456889999987776542 234568999998773 33443 21111 167
Q ss_pred eCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCC
Q 007620 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (595)
Q Consensus 360 ~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (595)
|+|||+.|++... ..++ .+|+.+|+.+.++... . . ....|+||++
T Consensus 340 ~SpDG~~ia~~~~------~~i~----------------~~Dl~~g~~~~lt~~~-~--~----------~~~~~sPdG~ 384 (429)
T PRK01742 340 ISADGKTLVMING------DNVV----------------KQDLTSGSTEVLSSTF-L--D----------ESPSISPNGI 384 (429)
T ss_pred CCCCCCEEEEEcC------CCEE----------------EEECCCCCeEEecCCC-C--C----------CCceECCCCC
Confidence 9999999887642 1222 4677778766554221 0 0 0246899999
Q ss_pred EEEEEEecCCCcceEEEEeCCCCceeeEecC
Q 007620 440 KILTSKESKTEITQYHILSWPLKKSSQITNF 470 (595)
Q Consensus 440 ~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~ 470 (595)
.+++... ...-..+++.+..+...++|+..
T Consensus 385 ~i~~~s~-~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 385 MIIYSST-QGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEEEc-CCCceEEEEEECCCCceEEccCC
Confidence 8888764 44455677888766667778654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=145.30 Aligned_cols=232 Identities=17% Similarity=0.187 Sum_probs=157.9
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
.+.+.+++|++..+. .+..+||++|.+++..++|+.... .+..+.|||||+.|+|....
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~----------- 210 (417)
T TIGR02800 152 GAFSTRIAYVSKSGK-----SRRYELQVADYDGANPQTITRSRE-----PILSPAWSPDGQKLAYVSFE----------- 210 (417)
T ss_pred CCcCCEEEEEEEeCC-----CCcceEEEEcCCCCCCEEeecCCC-----ceecccCCCCCCEEEEEEcC-----------
Confidence 345788999986531 346789999998888899976543 35688999999999997321
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEccc
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~ 196 (595)
+ ...+|+++++ +|+.+.++.. .....++|||||+.|+|+....
T Consensus 211 -----------~------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 211 -----------S------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred -----------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 0 1246888888 5666666533 2334689999999999986432
Q ss_pred CccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcc
Q 007620 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (595)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~ 276 (595)
. ..+||++|+.++..+.+...... ...+.|+|||+. |++... .. ...
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~-~~--------g~~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSD-RG--------GSP 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEEC-CC--------CCc
Confidence 2 24799999998877777543211 235789999985 555421 11 123
Q ss_pred eEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (595)
.+|++++ .+++.+.+.........+.|||||+.+++.... .+..+|+++|+++ +..+.+...... .
T Consensus 303 ~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~--~~~~~l~~~~~~--------~ 368 (417)
T TIGR02800 303 QIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDG--GGERVLTDTGLD--------E 368 (417)
T ss_pred eEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCC--CCeEEccCCCCC--------C
Confidence 6788786 555666666544556788999999988776432 2456899999988 345555432111 1
Q ss_pred CeeeCCCCCEEEEEeee
Q 007620 357 MMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 357 ~~~~~~dg~~l~~~~~~ 373 (595)
.+.|++||+.|++....
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 16899999999888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=128.68 Aligned_cols=344 Identities=11% Similarity=0.104 Sum_probs=165.8
Q ss_pred CCCCCCCCceeeecCCCC---CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccc
Q 007620 13 LPDDSLGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (595)
Q Consensus 13 ~~~~~~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (595)
.|.+.+-+..|||..+.. .++.+.+|.+||++|.|.+.+ ++..+||++|+++++++|||..+.. ..
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~----~~ 83 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGD----NT 83 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----T
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCC----Cc
Confidence 334445577888843331 257789999999999998876 5689999999999999999987642 12
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe
Q 007620 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA 168 (595)
Q Consensus 90 ~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~ 168 (595)
-...++|+++.|+|... ..+|+.+|+ +.+.
T Consensus 84 ~g~~~s~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEE 114 (386)
T ss_dssp TT-EE-TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--E
T ss_pred cceEEecCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcE
Confidence 25788899998887521 125677888 4465
Q ss_pred eecC--CCCeeeeeEE--CCCCCeEEEEEcccCcccccc-Cc--------ccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 169 KDFG--TPAVYTAVEP--SPDQKYVLITSMHRPYSYKVP-CA--------RFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 169 ~~lt--~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~~-~~--------~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
+.|. +..+.....| ..|++.++.....+......+ +. +-...|+.+|+.+|+.+.|......
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w----- 189 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW----- 189 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc-----
Confidence 5553 2233322344 556888776655433211111 11 1256899999999988887543210
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--ccccceeecCCCcEE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLAL 313 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--~~~~~~~wspDg~~l 313 (595)
..-+.+||.-...|.|.. +|.+. ...+.+++++. +|+..+.+.... ...+-.-|+|||..+
T Consensus 190 --------lgH~~fsP~dp~li~fCH---EGpw~---~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 190 --------LGHVQFSPTDPTLIMFCH---EGPWD---LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp --------EEEEEEETTEEEEEEEEE----S-TT---TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred --------ccCcccCCCCCCEEEEec---cCCcc---eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEE
Confidence 012566777666566642 22221 11235777786 665666665432 235667799999998
Q ss_pred EEEEeecc-cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCC
Q 007620 314 VNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (595)
Q Consensus 314 ~~~~~~~~-~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~ 392 (595)
.|...... ...-|+.+|++++ +.+.+........ +.-++||+.++-.-. +.. ......+.....
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~H--------~~ss~Dg~L~vGDG~---d~p--~~v~~~~~~~~~ 317 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTG--ERRRLMEMPWCSH--------FMSSPDGKLFVGDGG---DAP--VDVADAGGYKIE 317 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT----EEEEEEE-SEEE--------EEE-TTSSEEEEEE---------------------
T ss_pred EEEeecCCCCceEEEeeCCCCC--CceEEEeCCceee--------eEEcCCCCEEEecCC---CCC--ccccccccceec
Confidence 88764332 2346888999984 4454432221111 556788886542211 101 111111111223
Q ss_pred CcceeEeeecCCCceeeeeecCccccceeeEEeeeC-----CCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFG-----QGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
+.++|+.++++.++...|-.-.. .+ .+..+ ..-++||||+++++|++. ...++.||++++.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~--sw----~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDT--SW----KVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred CCcEEEEeccccCceeeeeeccC--cc----eeecCCCccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 56788888988777665533210 00 01111 113579999999999864 5677889999875
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-14 Score=142.92 Aligned_cols=230 Identities=19% Similarity=0.223 Sum_probs=154.9
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|++.|-. +-..+.++ ........|.|||||+.|+|+.-.. ....++|++++++|+..++.....
T Consensus 172 ~~~l~~~D~d----g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g- 238 (425)
T COG0823 172 PYELALGDYD----GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNG- 238 (425)
T ss_pred CceEEEEccC----CcceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCC-
Confidence 3456666542 33444554 3333577899999999999997642 223789999999998777766443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....++|||||+.|+|.... + ...+||++|
T Consensus 239 ----~~~~P~fspDG~~l~f~~~r---------------------d-------------------------g~~~iy~~d 268 (425)
T COG0823 239 ----NNGAPAFSPDGSKLAFSSSR---------------------D-------------------------GSPDIYLMD 268 (425)
T ss_pred ----ccCCccCCCCCCEEEEEECC---------------------C-------------------------CCccEEEEc
Confidence 34589999999999997321 0 146899999
Q ss_pred CCC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 LDG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+++ +.++|+... ....++|||||++|+|++.... ..+|++++++++..++++....
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~------------ 326 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGG------------ 326 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCC------------
Confidence 965 666787654 4458999999999999986532 2389999999998888765421
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+...+.|+|||+. |++.... .+. -.+.+.+. ..++..+.++ .......+.|+++|+.+++.+...
T Consensus 327 -~~~~p~~SpdG~~-i~~~~~~-~g~--------~~i~~~~~--~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~- 391 (425)
T COG0823 327 -GNSNPVWSPDGDK-IVFESSS-GGQ--------WDIDKNDL--ASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG- 391 (425)
T ss_pred -CCcCccCCCCCCE-EEEEecc-CCc--------eeeEEecc--CCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC-
Confidence 1225889999995 5555321 121 12344443 2332333333 334456789999999988876332
Q ss_pred cceEEEEEeCCC
Q 007620 322 SQTRTWLVCPGS 333 (595)
Q Consensus 322 ~~~~L~~~d~~~ 333 (595)
+...|+.+++++
T Consensus 392 ~~~~l~~~s~~g 403 (425)
T COG0823 392 GGSVLSLVSLDG 403 (425)
T ss_pred CCceEEEeeccc
Confidence 455788888776
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=144.30 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=123.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+.||+.++. +|...++..+.. ....|+|||||++|||+..+ ++..+||++|+.++..++||....
T Consensus 218 ~~i~~~~l~----~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~r-------dg~~~iy~~dl~~~~~~~Lt~~~g-- 282 (425)
T COG0823 218 PRIYYLDLN----TGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSR-------DGSPDIYLMDLDGKNLPRLTNGFG-- 282 (425)
T ss_pred ceEEEEecc----CCccceeeccCC--ccCCccCCCCCCEEEEEECC-------CCCccEEEEcCCCCcceecccCCc--
Confidence 679999998 666666664443 58899999999999999987 578999999999999888887654
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|||||+.|+|++.. .| ..+||++++
T Consensus 283 ---i~~~Ps~spdG~~ivf~Sdr---------------------~G-------------------------~p~I~~~~~ 313 (425)
T COG0823 283 ---INTSPSWSPDGSKIVFTSDR---------------------GG-------------------------RPQIYLYDL 313 (425)
T ss_pred ---cccCccCCCCCCEEEEEeCC---------------------CC-------------------------CcceEEECC
Confidence 33589999999999997421 11 358999999
Q ss_pred CC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccc
Q 007620 165 DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 165 ~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+| +.+++|... ....+.|||||++|+|...... ..++.+.|+.++. .+.++....
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~------------ 371 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG----------QWDIDKNDLASGGKIRILTSTYL------------ 371 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC----------ceeeEEeccCCCCcEEEcccccc------------
Confidence 77 678887653 3347899999999999984322 1367778876544 555554322
Q ss_pred cCCCCceeecCCCeeEEEE
Q 007620 242 EGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~ 260 (595)
...+.|.++|+. +.+.
T Consensus 372 --~e~ps~~~ng~~-i~~~ 387 (425)
T COG0823 372 --NESPSWAPNGRM-IMFS 387 (425)
T ss_pred --CCCCCcCCCCce-EEEe
Confidence 235788999985 4443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-12 Score=128.21 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=162.1
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
||||++++|..+..+. -.......+|++|+++++.++|+.... ....+.|||||+.|+|+..
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999997764210 001235689999999999999976522 4678999999999999732
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-------------------eee
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-------------------~~~ 178 (595)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 23555554 33444554321 123
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (595)
.+.|||||++|+|...+... -..+.+.+...... ..| .+.
T Consensus 105 ~~~WSpd~~~la~~~~d~~~---------v~~~~~~~~~~~~~----~yp---------------------------~~~ 144 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDERE---------VPEYPLPDYSPPDS----QYP---------------------------EVE 144 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TT---------S-EEEEEEESSSTE----SS----------------------------EEE
T ss_pred ceEECCCCCEEEEEEECCcC---------CceEEeeccCCccc----cCC---------------------------ccc
Confidence 67899999999999876431 11233333221100 000 011
Q ss_pred EEEeecCCCcccccCCcceEEeccCCCCCCCCceecc------ccCccccceeecCCCcEEEEEE-eecccceEEEEEeC
Q 007620 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWCDDSLALVNET-WYKTSQTRTWLVCP 331 (595)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~------~~~~~~~~~~wspDg~~l~~~~-~~~~~~~~L~~~d~ 331 (595)
.+.....|+. ...-.++++++ ++++...+. ..+..+..+.|++|+..+++.. ........|.++|+
T Consensus 145 ~~~YPk~G~~----np~v~l~v~~~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 145 SIRYPKAGDP----NPRVSLFVVDL---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp EEE--BTTS-------EEEEEEEES---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred ccccCCCCCc----CCceEEEEEEC---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence 1111111111 01123445565 444443222 2334467899999998544432 33346678999999
Q ss_pred CCCCCCcEEEeecccccccCCCCCCCeee-CCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeee
Q 007620 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (595)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (595)
.++ ..+.+..... ........ .+.+ .+++..+++...+. +-.+|| .++..++..+.|
T Consensus 218 ~tg--~~~~~~~e~~-~~Wv~~~~-~~~~~~~~~~~~l~~s~~~--G~~hly----------------~~~~~~~~~~~l 275 (353)
T PF00930_consen 218 STG--ETRVVLEETS-DGWVDVYD-PPHFLGPDGNEFLWISERD--GYRHLY----------------LYDLDGGKPRQL 275 (353)
T ss_dssp CTT--TCEEEEEEES-SSSSSSSS-EEEE-TTTSSEEEEEEETT--SSEEEE----------------EEETTSSEEEES
T ss_pred CCC--ceeEEEEecC-Ccceeeec-ccccccCCCCEEEEEEEcC--CCcEEE----------------EEcccccceecc
Confidence 874 4455432111 11111111 1344 37777777766532 234444 567767777777
Q ss_pred eecCccccceeeEEeeeCCCcccccccCCEEEEEEecCC-CcceEEEEeCC-CCceeeEecCC
Q 007620 411 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWP-LKKSSQITNFP 471 (595)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~-~p~~l~~~d~~-~~~~~~Lt~~~ 471 (595)
+..... +..+ ..++.+++.++|++.... .-..||.++++ ++++++||...
T Consensus 276 T~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 276 TSGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp S-SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred ccCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 755421 1111 245667788998886422 34679999999 88999999764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-11 Score=122.32 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=113.1
Q ss_pred ccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEE
Q 007620 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (595)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~ 457 (595)
...+|++|+..+|..-+.+...+- +.|+..+|+... +..- ..++.+-+.++...++...|+.+.++
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye-~~g~~~rlt~~g----~sh~---------~~l~~~~d~fv~~~~sv~sP~cv~~y 580 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYE-NPGEIARLTEPG----YSHS---------CELDQQCDHFVSYYSSVGSPPCVSLY 580 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEe-cCCceeeccCCC----cccc---------hhhhhhhhhHhhhhhcCCCCceEEEE
Confidence 557788887766666554443332 267777776432 1100 12333445677778899999999888
Q ss_pred eCCCCce----eeEecC---CCCCCCcCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCccc
Q 007620 458 SWPLKKS----SQITNF---PHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 529 (595)
Q Consensus 458 d~~~~~~----~~Lt~~---~~~~~~~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~ 529 (595)
.+..++- ++..-. -.....+... .+|.|+|++.-|..++|.+|+|.+|++|||| |+++++|+|| .
T Consensus 581 ~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkY--ptvl~VYGGP-----~ 653 (867)
T KOG2281|consen 581 SLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKY--PTVLNVYGGP-----G 653 (867)
T ss_pred eccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCC--ceEEEEcCCC-----c
Confidence 7765432 111110 0011222234 7799999999999999999999999999998 9999999642 2
Q ss_pred CCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhhhccc
Q 007620 530 AGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILSYLNR 586 (595)
Q Consensus 530 ~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (595)
-+.|+ +.|-.--+..+++||++||+|+. |...|+.--+=.|-.-++.+|
T Consensus 654 VQlVn---nsfkgi~ylR~~~LaslGy~Vv~-----IDnRGS~hRGlkFE~~ik~km 702 (867)
T KOG2281|consen 654 VQLVN---NSFKGIQYLRFCRLASLGYVVVF-----IDNRGSAHRGLKFESHIKKKM 702 (867)
T ss_pred eEEee---ccccceehhhhhhhhhcceEEEE-----EcCCCccccchhhHHHHhhcc
Confidence 22222 23443345567999999999998 655554333334444444433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=107.45 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=145.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|||++||. +++++|||..+.. ......+||+++.|+|+.. ..+|+.+|+++++.+.|...++.
T Consensus 59 ~~nly~lDL~----t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLA----TGEITQLTDGPGD-NTFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETT----T-EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEcc----cCEEEECccCCCC-CccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCcc
Confidence 4689999999 9999999975543 3447899999999999763 36899999999999999887763
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 84 ~~~~~~~~~~Ws--pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ...-.|+ .|++.++.......... .. .+ - .-+.+ .+.-.....|+.
T Consensus 124 ~----~g~gt~v~n~d~t~~~g~e~~~~d~~----------~l--~~-~-----~~f~e---------~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 W----KGYGTWVANSDCTKLVGIEISREDWK----------PL--TK-W-----KGFRE---------FYEARPHCRIFT 172 (386)
T ss_dssp E----EEEEEEEE-TTSSEEEEEEEEGGG-----------------S-H-----HHHHH---------HHHC---EEEEE
T ss_pred c----ccccceeeCCCccEEEEEEEeehhcc----------Cc--cc-c-----HHHHH---------HHhhCCCceEEE
Confidence 2 2345776 46777666421100000 00 00 0 00000 000013578999
Q ss_pred EcC-CCCeeecCCC-CeeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccc
Q 007620 162 GSL-DGTAKDFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (595)
Q Consensus 162 ~d~-~g~~~~lt~~-~~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~ 238 (595)
+|+ +|+.+.|... ....-+-+||. ...|.|.- ..|. .....+||.++.+|+..+.+......+
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH-EGpw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e------- 238 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH-EGPW------DLVDQRIWTINTDGSNVKKVHRRMEGE------- 238 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE--S-T------TTSS-SEEEEETTS---EESS---TTE-------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEec-cCCc------ceeceEEEEEEcCCCcceeeecCCCCc-------
Confidence 999 7788776543 34455677775 56666753 2332 222458999999999888886442110
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEe
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (595)
...---|.|||.. |+|.....++.. -.++-++. .+ ++.+.+..-+ ...-+.-++||..++-+..
T Consensus 239 ----~~gHEfw~~DG~~-i~y~~~~~~~~~-------~~i~~~d~--~t-~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 ----SVGHEFWVPDGST-IWYDSYTPGGQD-------FWIAGYDP--DT-GERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ----EEEEEEE-TTSS--EEEEEEETTT---------EEEEEE-T--TT---EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred ----ccccccccCCCCE-EEEEeecCCCCc-------eEEEeeCC--CC-CCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 0112469999985 655533332211 12333453 33 3444443322 2333445688887766532
Q ss_pred ec------------ccceEEEEEeCCCCCCCcEEEeecccc----cccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007620 319 YK------------TSQTRTWLVCPGSKDVAPRVLFDRVFE----NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (595)
Q Consensus 319 ~~------------~~~~~L~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~ 382 (595)
.. ....-||++++.. +..+.|..+... +....+..+-++++|||+.|+|.+...| ...||
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G--~~~vY 378 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG--PPAVY 378 (386)
T ss_dssp ------------------EEEEEETTT--TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS--S-EEE
T ss_pred CCCccccccccceecCCcEEEEecccc--CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC--CccEE
Confidence 10 1123677788876 344545333211 1011122355899999999999986543 33455
Q ss_pred E
Q 007620 383 L 383 (595)
Q Consensus 383 ~ 383 (595)
+
T Consensus 379 ~ 379 (386)
T PF14583_consen 379 L 379 (386)
T ss_dssp E
T ss_pred E
Confidence 3
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-08 Score=96.56 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=135.3
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|++.|+. +++..+... .........|+|||+.++.+.. ....|+++++.+++.........
T Consensus 11 ~~v~~~d~~----t~~~~~~~~--~~~~~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~-- 73 (300)
T TIGR03866 11 NTISVIDTA----TLEVTRTFP--VGQRPRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGEVIGTLPSGP-- 73 (300)
T ss_pred CEEEEEECC----CCceEEEEE--CCCCCCceEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEeccCCC--
Confidence 357888887 565544432 2234667999999998755542 23678889998887654322111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+.|+|||+.|+..... ...|.++|+
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~ 102 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANED------------------------------------------------DNLVTVIDI 102 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEEC
Confidence 23568899999977664210 123555555
Q ss_pred -CCC-eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 -DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 -~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+++ ...+........+.|+|||+.+++..... ..++.+|..+++........ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------Q 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------C
Confidence 222 22222122234689999999988875421 24556787765443211100 1
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eecccc-------CccccceeecCCCcEEE
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-------DLRFRSVSWCDDSLALV 314 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~-------~~~~~~~~wspDg~~l~ 314 (595)
....+.|++||+. |+.. . .....++++|. ..++. +.+... ......+.|+||++.++
T Consensus 158 ~~~~~~~s~dg~~-l~~~-~----------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVS-S----------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CccEEEECCCCCE-EEEE-c----------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 1235788999873 4322 1 11235666675 32232 222110 11123577999998643
Q ss_pred EEEeecccceEEEEEeCCCCCCCcE-EEe-ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 315 NETWYKTSQTRTWLVCPGSKDVAPR-VLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.... ...+|.++|+.+. +.. .+. ...+.. +.|+|+|+.|+...
T Consensus 223 ~~~~---~~~~i~v~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 223 VALG---PANRVAVVDAKTY--EVLDYLLVGQRVWQ---------LAFTPDEKYLLTTN 267 (300)
T ss_pred EEcC---CCCeEEEEECCCC--cEEEEEEeCCCcce---------EEECCCCCEEEEEc
Confidence 3221 1236888898763 322 221 222222 78999999887654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-08 Score=95.65 Aligned_cols=284 Identities=9% Similarity=0.050 Sum_probs=165.3
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
..+-.++.. ++.|..- |.+|+|++.. ++..+||-.|+++...++=|+..+-. .-.-+.||++|
T Consensus 219 eK~vdl~~~--vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtdYY------~R~~nsDGkrI 281 (668)
T COG4946 219 EKFVDLDGN--VSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTDYY------PRNANSDGKRI 281 (668)
T ss_pred eeeeecCCC--cCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchhcc------ccccCCCCcEE
Confidence 344445554 8888875 8899999975 57899999999998888887765411 11234588888
Q ss_pred EEEecCCC----CCCCCccccCCC-CeeeecCcccccccccc-cccccCcCCccceEEeecceEEEEcC-CCCeeecCCC
Q 007620 102 IFTIPSSR----RDPPKKTMVPLG-PKIQSNEQKNIIISRMT-DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP 174 (595)
Q Consensus 102 ~~~~~~~~----~~~~~~~~~~~g-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~ 174 (595)
+|..-.+- ........+.-+ |.-+..+..+-.....| .+.. ..++.......+.+.|+++. .|-..++..+
T Consensus 282 vFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa--~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~ 359 (668)
T COG4946 282 VFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFA--VVNGDYIALVSRGKAFIMRPWDGYSIQVGKK 359 (668)
T ss_pred EEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhc--cCCCcEEEEEecCcEEEECCCCCeeEEcCCC
Confidence 88521100 000000001111 00000000000000001 0000 02344555567889999998 5667788776
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
..+.--.++-|++.++..... ...|.++|.+|++.+.+...- .....+.-++||+
T Consensus 360 ~~VrY~r~~~~~e~~vigt~d------------gD~l~iyd~~~~e~kr~e~~l-------------g~I~av~vs~dGK 414 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTND------------GDKLGIYDKDGGEVKRIEKDL-------------GNIEAVKVSPDGK 414 (668)
T ss_pred CceEEEEEccCCcceEEeccC------------CceEEEEecCCceEEEeeCCc-------------cceEEEEEcCCCc
Confidence 544445566676655555432 237889999999877763221 1123466789988
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
. ++.. +.+-+++++|+ +.|.++.+.... +-+..+.|+|++++++|.-...--..+|.++|.++
T Consensus 415 ~-~vva------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 415 K-VVVA------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred E-EEEE------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 4 2222 34557888897 666887776554 44789999999999888642111234788888888
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeec
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKE 374 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 374 (595)
+ +.-.++.....+ ..+++.|||++|||.+..+
T Consensus 479 ~--Kiy~vTT~ta~D-------fsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 479 G--KIYDVTTPTAYD-------FSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred C--eEEEecCCcccc-------cCcccCCCCcEEEEEeccc
Confidence 3 333332211111 1278899999999998654
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-07 Score=100.34 Aligned_cols=230 Identities=18% Similarity=0.137 Sum_probs=121.3
Q ss_pred eeecCCCcE-EEEEEeecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007620 304 VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (595)
Q Consensus 304 ~~wspDg~~-l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 380 (595)
+.++.|+.. +........+..++..+....+ ..++.++.. .+.+ .+.++.+.+.++|.+.........
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~-~~~~~lt~g~w~v~~--------i~~~~~~~~~i~f~~~~~~~~~~~ 415 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNG-SEPRMLTSGNWEVTS--------ILGYDKDSNRIYFDAYEEDPSERH 415 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCC-CccccccccceEEEE--------eccccCCCceEEEEecCCCCCceE
Confidence 456666543 2222211222567777777663 244545322 2222 145557778888877543222233
Q ss_pred EEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcc-eEEEEeC
Q 007620 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT-QYHILSW 459 (595)
Q Consensus 381 l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~-~l~~~d~ 459 (595)
+| .+++.+.....+++...+. ...... ..++...+.++.....+..|- .+-+.+.
T Consensus 416 ly----------------~i~~~~~~~~~lt~~~~~~-~~~~~~-------~~~~~~~~~~v~~~~gP~~p~~~~~~~~~ 471 (755)
T KOG2100|consen 416 LY----------------SISLGSGTVESLTCSLITG-PCTYLS-------VSFSKSAKYYVLSCSGPKVPDGQLTRHSS 471 (755)
T ss_pred EE----------------EEEccccccccccccCCCC-cceEEE-------EecCCcccEEEEEccCCCCCcceeecccc
Confidence 43 4555555555555543220 011111 234444566666555555442 2323332
Q ss_pred CCCc-eeeEecCCCCCCC---cCCC-ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCccc
Q 007620 460 PLKK-SSQITNFPHPYPT---LASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 534 (595)
Q Consensus 460 ~~~~-~~~Lt~~~~~~~~---~~~~-~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ 534 (595)
...+ ...|... ....+ ...+ ..+..+.+- ||...+.++++|++|+++||| |+||++|+||. .++++
T Consensus 472 ~~~~~~~~Le~n-~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~ky--Pllv~~yGGP~-----sq~v~ 542 (755)
T KOG2100|consen 472 KNSKTIVVLETN-EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSKKY--PLLVVVYGGPG-----SQSVT 542 (755)
T ss_pred ccceEEEEeccC-hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCCC--CEEEEecCCCC-----cceee
Confidence 2211 2334332 12111 1112 444444443 999999999999999999977 99999875432 12222
Q ss_pred CCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhhHhhhcc
Q 007620 535 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYLILSYLN 585 (595)
Q Consensus 535 ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (595)
+ .|. .-|+.+++...|++|++ +.|.|....++.|..++..+
T Consensus 543 ~---~~~--~~~~~~~~s~~g~~v~~-----vd~RGs~~~G~~~~~~~~~~ 583 (755)
T KOG2100|consen 543 S---KFS--VDWNEVVVSSRGFAVLQ-----VDGRGSGGYGWDFRSALPRN 583 (755)
T ss_pred e---eEE--ecHHHHhhccCCeEEEE-----EcCCCcCCcchhHHHHhhhh
Confidence 1 111 12445678888999999 66666667788877766544
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-06 Score=89.86 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=84.2
Q ss_pred cCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCC-CCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 437 d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~-~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
+...+.+.++|.+.|..+|-+|+..++.+.|-...-+. .++.....+.++.++.||.+|+--|++=.+++- +.+-|+
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~--~g~~p~ 450 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKL--DGSAPL 450 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCC--CCCCcE
Confidence 55789999999999999999999999988886654332 333445889999999999999999998877553 446699
Q ss_pred EEEeccCCccCcccCCcccCCC--CcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCc
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSP--NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND 576 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp--~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~ 576 (595)
|+++|+- .|.. -.|.. ..--|+.+|++-. |-++| ||++++-
T Consensus 451 lLygYGa-----------YG~s~~p~Fs~----~~lSLlDRGfiyA----IAHVR-GGgelG~ 493 (682)
T COG1770 451 LLYGYGA-----------YGISMDPSFSI----ARLSLLDRGFVYA----IAHVR-GGGELGR 493 (682)
T ss_pred EEEEecc-----------ccccCCcCccc----ceeeeecCceEEE----EEEee-cccccCh
Confidence 9999952 1211 12321 1235788897644 35777 5666654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-06 Score=83.34 Aligned_cols=270 Identities=11% Similarity=0.035 Sum_probs=140.9
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|+++|+++++......... ....+.|+|||+.|+.....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~-----~~~~l~~~~dg~~l~~~~~~--------------------------------- 51 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQ-----RPRGITLSKDGKLLYVCASD--------------------------------- 51 (300)
T ss_pred CCEEEEEECCCCceEEEEECCC-----CCCceEECCCCCEEEEEECC---------------------------------
Confidence 3578888998887655543322 34578999999987664210
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
...|+++|+ +++.. .+........+.|+|||+.++++... ...+.+||+.+
T Consensus 52 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 52 ---------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred ---------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 123555666 44433 23322223467899999988766422 23688999886
Q ss_pred ceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc
Q 007620 219 KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (595)
Q Consensus 219 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~ 297 (595)
++. ..+... .....+.|+|||+. ++.. ..+ ...++.++. ..++.......
T Consensus 105 ~~~~~~~~~~--------------~~~~~~~~~~dg~~-l~~~-~~~----------~~~~~~~d~---~~~~~~~~~~~ 155 (300)
T TIGR03866 105 RKVLAEIPVG--------------VEPEGMAVSPDGKI-VVNT-SET----------TNMAHFIDT---KTYEIVDNVLV 155 (300)
T ss_pred CeEEeEeeCC--------------CCcceEEECCCCCE-EEEE-ecC----------CCeEEEEeC---CCCeEEEEEEc
Confidence 543 222110 01235789999973 3222 111 112333453 22222211112
Q ss_pred CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCC-CCCCeeeCCCCCEEEEEeeecCC
Q 007620 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKEND 376 (595)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~ 376 (595)
......+.|+|||..++..... . ..++++|+.+++ ..+.+. .......... ....+.++++|+.+++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~-~--~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--- 227 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEI-G--GTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--- 227 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCC-C--CEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC---
Confidence 2234567899999876554211 1 268888988741 112221 1110000000 00126788999987665421
Q ss_pred cccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEE
Q 007620 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (595)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~ 456 (595)
...+. .+|+++++........ ..+. ...|+++++.|+.... .-++|.+
T Consensus 228 -~~~i~----------------v~d~~~~~~~~~~~~~-----~~~~-------~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 228 -ANRVA----------------VVDAKTYEVLDYLLVG-----QRVW-------QLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred -CCeEE----------------EEECCCCcEEEEEEeC-----CCcc-------eEEECCCCCEEEEEcC---CCCeEEE
Confidence 11222 3566666654322111 0111 2458889988765432 2356999
Q ss_pred EeCCCCce
Q 007620 457 LSWPLKKS 464 (595)
Q Consensus 457 ~d~~~~~~ 464 (595)
+|+.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99887664
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-06 Score=84.68 Aligned_cols=86 Identities=17% Similarity=0.095 Sum_probs=51.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-CCceEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~ 82 (595)
...|.+.++.. +|+.+.+..+..........+||||++|+.... ....|.+++++ .|+...+.....
T Consensus 11 ~~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 11 SQQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred CCCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecC
Confidence 34578888852 455444443444445778899999998765432 12455555554 455443322111
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.++|||+.|+..
T Consensus 79 ---~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 79 ---PGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred ---CCCceEEEECCCCCEEEEE
Confidence 1134578899999988775
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-06 Score=86.98 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=55.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+|++.++. ..+|+...+.........+...+||++++|+.+.....+ .+.-..|.++.++|+...+......
T Consensus 13 ~gI~~~~~d--~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~----~g~v~~~~i~~~~g~L~~~~~~~~~- 85 (345)
T PF10282_consen 13 GGIYVFRFD--EETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGD----SGGVSSYRIDPDTGTLTLLNSVPSG- 85 (345)
T ss_dssp TEEEEEEEE--TTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSST----TTEEEEEEEETTTTEEEEEEEEEES-
T ss_pred CcEEEEEEc--CCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccC----CCCEEEEEECCCcceeEEeeeeccC-
Confidence 588999883 236766655544455567888999999877665432100 2344455556555776666433210
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+..+||++.|+..
T Consensus 86 -g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 86 -GSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp -SSCEEEEEECTTSSEEEEE
T ss_pred -CCCcEEEEEecCCCEEEEE
Confidence 0122356778999988876
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-06 Score=87.07 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=76.2
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
..++||||++|||..+.+. .....|+++|+++|+...-. ... ...+.+.|++||+.|+|+........
T Consensus 128 ~~~~Spdg~~la~~~s~~G-----~e~~~l~v~Dl~tg~~l~d~-i~~----~~~~~~~W~~d~~~~~y~~~~~~~~~-- 195 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG-----SEWYTLRVFDLETGKFLPDG-IEN----PKFSSVSWSDDGKGFFYTRFDEDQRT-- 195 (414)
T ss_dssp EEEETTTSSEEEEEEEETT-----SSEEEEEEEETTTTEEEEEE-EEE----EESEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeECCCCCEEEEEecCCC-----CceEEEEEEECCCCcCcCCc-ccc----cccceEEEeCCCCEEEEEEeCccccc--
Confidence 6789999999999887642 34578999999999643210 011 01234999999999999753221000
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC--CeeecCC---CCe-eeeeEECCCCC
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGT---PAV-YTAVEPSPDQK 187 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g--~~~~lt~---~~~-~~~~~~SpDg~ 187 (595)
. .. ....+||...+ ++ +.+.|.. +.. ...+..|+||+
T Consensus 196 -------~-------------------------~~----~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 196 -------S-------------------------DS----GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ---------------------------------CC----GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred -------c-------------------------cC----CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0 00 01346777777 44 2233322 233 56788999999
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+|++....... ..+++++++..
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~ 261 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDD 261 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCC
T ss_pred EEEEEEEcccc---------CCeEEEEeccc
Confidence 99887654320 14666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-07 Score=96.85 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=78.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
..++|.+||||+++||+.....+++ +...+||+.+. +++.+++|... ....+.|+|||+.|+|......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~--d~~s~Lwv~~~-gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~-- 419 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAP--DPASSLWVGPL-GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNT-- 419 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCC--CcceEEEEEeC-CCcceeeecCC------CCCCceECCCCCceEEEecCcc--
Confidence 5789999999999999986432111 45679999997 56668886543 3578999999999999743100
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCCCeeeeeEECCCCCeEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
.. ++. . .+ ...++|++++++ +.++ .....+..+.|||||++|+
T Consensus 420 -----------~~-----------~v~-~-----~~-------~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 420 -----------VV-----------RVI-R-----DP-------ATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred -----------eE-----------EEe-c-----cC-------CCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 00 000 0 00 246888888854 6554 2233467899999999999
Q ss_pred EEE
Q 007620 191 ITS 193 (595)
Q Consensus 191 ~~~ 193 (595)
|..
T Consensus 464 ~i~ 466 (591)
T PRK13616 464 MII 466 (591)
T ss_pred EEE
Confidence 986
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-07 Score=83.92 Aligned_cols=147 Identities=13% Similarity=0.277 Sum_probs=89.2
Q ss_pred ccceEEccCCCEEEEEEecc--cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.....|+|+|+.|++...+. +......+..+||.++..+.....+.-...+ .+..++|+|+|+.+++..-.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~--- 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGS--- 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEcc---
Confidence 55689999999999988742 1111112357899998877665555322221 47799999999998775210
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCCCeeeeeEECCCCCeE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~~~~~~~~~SpDg~~l 189 (595)
....+.++|+.++ ...+. ......+.|||+|++|
T Consensus 81 --------------------------------------------~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 81 --------------------------------------------MPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFL 115 (194)
T ss_pred --------------------------------------------CCcccEEEcCcccEeEeec-CCCceEEEECCCCCEE
Confidence 0012333344332 22232 2223468999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++..... ...+|.+||....+.-...+.+ ....+.|+|||+.
T Consensus 116 ~~~g~~n----------~~G~l~~wd~~~~~~i~~~~~~--------------~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 116 VLAGFGN----------LNGDLEFWDVRKKKKISTFEHS--------------DATDVEWSPDGRY 157 (194)
T ss_pred EEEEccC----------CCcEEEEEECCCCEEeeccccC--------------cEEEEEEcCCCCE
Confidence 9986432 1357889998844332211111 1235899999995
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-05 Score=73.41 Aligned_cols=305 Identities=15% Similarity=0.129 Sum_probs=155.6
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..+|+..+|.. ..|+...+..........-..|+|++++|+-+...++ .+.-..|.+|.+.|+...+-.....
T Consensus 15 s~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-----~ggvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-----EGGVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecCC-----cCcEEEEEEcCCCCeEEEeeccccC
Confidence 35778888752 3555444433334445777899999998766554322 3456677777777887766332211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
......+..+++|+.|+...-.. +. + .++ +...++... ...++. .+
T Consensus 88 --g~~p~yvsvd~~g~~vf~AnY~~-g~------------v-----------~v~----p~~~dG~l~---~~v~~~-~h 133 (346)
T COG2706 88 --GSPPCYVSVDEDGRFVFVANYHS-GS------------V-----------SVY----PLQADGSLQ---PVVQVV-KH 133 (346)
T ss_pred --CCCCeEEEECCCCCEEEEEEccC-ce------------E-----------EEE----EcccCCccc---cceeee-ec
Confidence 00113456778888776642110 00 0 000 000011000 001111 11
Q ss_pred C-CC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
. .| ..+|-+. -.....+.|||++|++..... .++++++++.|.........+. | .
T Consensus 134 ~g~~p~~rQ~~~--h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~v~---~------G 190 (346)
T COG2706 134 TGSGPHERQESP--HVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAEVK---P------G 190 (346)
T ss_pred CCCCCCccccCC--ccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCccccccccccC---C------C
Confidence 1 11 2222221 134678999999998886532 3788888876655444332211 1 1
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc---c------cCccccceeecCCCcE
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---K------LDLRFRSVSWCDDSLA 312 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~---~------~~~~~~~~~wspDg~~ 312 (595)
.|+|-+.+.|+++. .|.+.-+ .+.+.++..++. .|+.+.|. . .....+.+..|+||+.
T Consensus 191 ~GPRHi~FHpn~k~-aY~v~EL-----------~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 191 AGPRHIVFHPNGKY-AYLVNEL-----------NSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred CCcceEEEcCCCcE-EEEEecc-----------CCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 45678999999983 4444211 223333333122 23444332 1 1123456777999997
Q ss_pred EEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~ 392 (595)
|+...... ....++.+|.++ +..+.+........ .|. .+..++.|+.|++..++.. ...+|
T Consensus 258 LYasNRg~-dsI~~f~V~~~~--g~L~~~~~~~teg~--~PR--~F~i~~~g~~Liaa~q~sd--~i~vf---------- 318 (346)
T COG2706 258 LYASNRGH-DSIAVFSVDPDG--GKLELVGITPTEGQ--FPR--DFNINPSGRFLIAANQKSD--NITVF---------- 318 (346)
T ss_pred EEEecCCC-CeEEEEEEcCCC--CEEEEEEEeccCCc--CCc--cceeCCCCCEEEEEccCCC--cEEEE----------
Confidence 66543222 234566777776 33333322222111 111 1678899998887765431 23333
Q ss_pred CcceeEeeecCCCceeee
Q 007620 393 NIPFLDLFDINTGSKERI 410 (595)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l 410 (595)
+.|-++|+.+.+
T Consensus 319 ------~~d~~TG~L~~~ 330 (346)
T COG2706 319 ------ERDKETGRLTLL 330 (346)
T ss_pred ------EEcCCCceEEec
Confidence 567778876655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=81.56 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=52.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+||.++.. +.....+. +.....+...+|||+|+++|.+... ....+-++++++.....+ ...
T Consensus 39 ~~l~~~~~~----~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~~~~i~~~---~~~- 101 (194)
T PF08662_consen 39 FELFYLNEK----NIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVKGKKIFSF---GTQ- 101 (194)
T ss_pred EEEEEEecC----CCccceee-ccCCCceEEEEECcCCCEEEEEEcc--------CCcccEEEcCcccEeEee---cCC-
Confidence 456666665 45554554 3333358999999999999988642 223667778863333333 221
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+.|||+|+.|+..
T Consensus 102 ---~~n~i~wsP~G~~l~~~ 118 (194)
T PF08662_consen 102 ---PRNTISWSPDGRFLVLA 118 (194)
T ss_pred ---CceEEEECCCCCEEEEE
Confidence 34578999999998885
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00052 Score=68.76 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec-CCCCCCCCccccC
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVP 119 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~-~~~~~~~~~~~~~ 119 (595)
|+.+ +|+.+.... ...+.|+++|.++++......... .... ..||||+.|+.... -+|...
T Consensus 11 ~~~~-v~V~d~~~~----~~~~~v~ViD~~~~~v~g~i~~G~-----~P~~-~~spDg~~lyva~~~~~R~~~------- 72 (352)
T TIGR02658 11 DARR-VYVLDPGHF----AATTQVYTIDGEAGRVLGMTDGGF-----LPNP-VVASDGSFFAHASTVYSRIAR------- 72 (352)
T ss_pred CCCE-EEEECCccc----ccCceEEEEECCCCEEEEEEEccC-----CCce-eECCCCCEEEEEecccccccc-------
Confidence 5555 676653100 113789999999887433222221 1123 49999999888632 111100
Q ss_pred CCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCC---C-----eeeeeEECCCCCeE
Q 007620 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP---A-----VYTAVEPSPDQKYV 189 (595)
Q Consensus 120 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~---~-----~~~~~~~SpDg~~l 189 (595)
| + ....|-++|+ +.+ ...|..+ . ....+.+||||++|
T Consensus 73 ----------G-----------------~------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 73 ----------G-----------------K------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred ----------C-----------------C------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 1 1 1345667777 554 3334321 1 22378999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++... .| ...+-++|+.+++.
T Consensus 120 ~V~n~-~p----------~~~V~VvD~~~~kv 140 (352)
T TIGR02658 120 LFYQF-SP----------SPAVGVVDLEGKAF 140 (352)
T ss_pred EEecC-CC----------CCEEEEEECCCCcE
Confidence 87742 22 24788999986654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-05 Score=74.52 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=37.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC-CCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES-PDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~-~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+-..+|||||++||--+ +.+-+-+.|+.+..+...-+. .. -+..+.|||||+.|+-.
T Consensus 117 ~Vl~~~fsp~g~~l~tGs----------GD~TvR~WD~~TeTp~~t~KgH~~-----WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGS----------GDTTVRLWDLDTETPLFTCKGHKN-----WVLCVAWSPDGKKIASG 175 (480)
T ss_pred cEEEEEecCCCceEEecC----------CCceEEeeccCCCCcceeecCCcc-----EEEEEEECCCcchhhcc
Confidence 356789999999987643 223444447766554332221 22 35588999999998874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0015 Score=63.38 Aligned_cols=174 Identities=12% Similarity=0.020 Sum_probs=91.2
Q ss_pred ceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc----ccCccccceeecCCCcEEEEEEeeccc
Q 007620 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 247 ~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....||++. |+. .|- ..|.++++++ +.|...... ........+.|.|+++..+... .-..
T Consensus 150 a~~tP~~~~-l~v---~DL--------G~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~s 213 (346)
T COG2706 150 ANFTPDGRY-LVV---PDL--------GTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNS 213 (346)
T ss_pred eeeCCCCCE-EEE---eec--------CCceEEEEEc---ccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCC
Confidence 456888873 322 222 2356666675 333433221 2222345688999998522221 1123
Q ss_pred ceEEEEEeCCCCCCCcEEEe-----ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCccee
Q 007620 323 QTRTWLVCPGSKDVAPRVLF-----DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 397 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l 397 (595)
...+|.++..+ ++.+.|- ..++.. ..+...+..++||+.||+... +.....+
T Consensus 214 tV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNR--g~dsI~~---------------- 270 (346)
T COG2706 214 TVDVLEYNPAV--GKFEELQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNR--GHDSIAV---------------- 270 (346)
T ss_pred EEEEEEEcCCC--ceEEEeeeeccCccccCC---CCceeEEEECCCCCEEEEecC--CCCeEEE----------------
Confidence 44677777654 3444441 112211 112234788999999987753 2222223
Q ss_pred EeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEec
Q 007620 398 DLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (595)
Q Consensus 398 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~ 469 (595)
+++|..+|+.+.+........ .+.. -.|+++++.|+...+..++ -.+|.+|..+|+++.+..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~--~PR~-------F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQ--FPRD-------FNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCc--CCcc-------ceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 356766676544322111000 0111 2467777888777766555 558888877777766654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-05 Score=72.17 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=135.2
Q ss_pred eEEEecCCCCC-CC-CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 7 IGIHRLLPDDS-LG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 7 ~~~~~~~~~~~-~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+.+.+|..++. -| ..++++++.. .++....|+||++ |+..+. + ..|.+.|+++|+.++.+-....
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~-alS~sw-------D--~~lrlWDl~~g~~t~~f~GH~~- 106 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNF-ALSASW-------D--GTLRLWDLATGESTRRFVGHTK- 106 (315)
T ss_pred EEEEEeccCccccCceeeeeeccce--EecceEEccCCce-EEeccc-------c--ceEEEEEecCCcEEEEEEecCC-
Confidence 34445543322 33 4567776333 5889999999975 566544 2 4566669999887666533221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+-+.++++|.+.|+-.+++. .|-+++.
T Consensus 107 ---dVlsva~s~dn~qivSGSrDk-------------------------------------------------Tiklwnt 134 (315)
T KOG0279|consen 107 ---DVLSVAFSTDNRQIVSGSRDK-------------------------------------------------TIKLWNT 134 (315)
T ss_pred ---ceEEEEecCCCceeecCCCcc-------------------------------------------------eeeeeee
Confidence 466889999999887643211 1222222
Q ss_pred CCC-eeecCC---CCeeeeeEECCCC-CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 165 DGT-AKDFGT---PAVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 165 ~g~-~~~lt~---~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
-|. .-.+.. .+.+.-+.|||+. .-+++.... ...+-+||+.+-+.+...- +
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------------DktvKvWnl~~~~l~~~~~------------g 190 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW------------DKTVKVWNLRNCQLRTTFI------------G 190 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC------------CceEEEEccCCcchhhccc------------c
Confidence 221 111111 2356678999985 333333321 2467889998766544211 1
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc--CccccceeecCCCcEEEEEE
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspDg~~l~~~~ 317 (595)
..........||||. +.. ..+ ...++++||+ . +.+.+... ...+....|||+.-+|+...
T Consensus 191 h~~~v~t~~vSpDGs--lca---sGg--------kdg~~~LwdL---~--~~k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGS--LCA---SGG--------KDGEAMLWDL---N--EGKNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred ccccEEEEEECCCCC--EEe---cCC--------CCceEEEEEc---c--CCceeEeccCCCeEeeEEecCCceeEeecc
Confidence 111123467899997 221 111 2357788887 3 22333332 23466788999887766543
Q ss_pred eecccceEEEEEeCCCCCCCcEEEeecccc-----cccCCCCCCCeeeCCCCCEEEEEe
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-----NVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ..|-+.|++++ +++.+.... .....|--..+.|++||+.|+...
T Consensus 253 ~-----~sIkIwdl~~~----~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 A-----TSIKIWDLESK----AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred C-----CceEEEeccch----hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1 14666677763 222211111 001111112378999999887654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=92.54 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=64.7
Q ss_pred CceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccccc--ccCCCceEEEEEECCCCceEeccc
Q 007620 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~--~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
++.+.||+.+. ++..+++|. .. ....|+|||||+.|+|++....-. -......+||++++++++.++ .
T Consensus 376 d~~s~Lwv~~~-----gg~~~~lt~--g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~ 445 (591)
T PRK13616 376 DPASSLWVGPL-----GGVAVQVLE--GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R 445 (591)
T ss_pred CcceEEEEEeC-----CCcceeeec--CC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c
Confidence 35678999986 566688873 33 589999999999999986431000 000345799999999888775 3
Q ss_pred CCCccccccccceEEecCCcEEEEEe
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
... .++.++|||||++|+|+.
T Consensus 446 ~~g-----~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 446 VPG-----PISELQLSRDGVRAAMII 466 (591)
T ss_pred cCC-----CcCeEEECCCCCEEEEEE
Confidence 233 578999999999999974
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00079 Score=68.27 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=72.3
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceE-EEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+.++|||++|+.+... ...+.+++++ .+.. +.+...+.. .+.....++|||+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~p~g~~ 139 (330)
T PRK11028 83 THISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEGL-----------EGCHSANIDPDNRT 139 (330)
T ss_pred eEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccCC-----------CcccEeEeCCCCCE
Confidence 468899999999887532 1356677764 2211 111111100 11234668899873
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-----cc-ccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-----LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-----l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
++... ...+.+.+++. .+.+.... .. ........+.|+|||+.++.... ... .|.++
T Consensus 140 -l~v~~-----------~~~~~v~v~d~--~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~--~v~v~ 202 (330)
T PRK11028 140 -LWVPC-----------LKEDRIRLFTL--SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNS--SVDVW 202 (330)
T ss_pred -EEEee-----------CCCCEEEEEEE--CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCC--EEEEE
Confidence 43321 12245666665 12222211 01 11122346789999987554421 123 55555
Q ss_pred eCCCCCCCcEEEeeccc-ccccCCCCC-CCeeeCCCCCEEEEEe
Q 007620 330 CPGSKDVAPRVLFDRVF-ENVYSDPGS-PMMTRTSTGTNVIAKI 371 (595)
Q Consensus 330 d~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~dg~~l~~~~ 371 (595)
+++...++.+.+..... ......+.. ..+.++|||+++|+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 203 QLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred EEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 55421122232211100 000000000 0156789999888763
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00035 Score=67.97 Aligned_cols=192 Identities=19% Similarity=0.200 Sum_probs=109.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.+....|+|+|+.|++... ...|.++++.+++. ..+..... .+..+.|+|+++.|+....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~---- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSS---- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcC----
Confidence 5888999999999887653 25666777776653 33322222 3458899999987776521
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC-CeeecCC-CCeeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-PAVYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g-~~~~lt~-~~~~~~~~~SpDg~ 187 (595)
...|+++++ ++ ....+.. ......+.|+|+++
T Consensus 72 ---------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 72 ---------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred ---------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 123445555 22 2333332 22456789999977
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
.|+... . ...+.+||+..++ ...+.... .....+.|+|++. ++...
T Consensus 107 ~~~~~~-~------------~~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~--~l~~~----- 153 (289)
T cd00200 107 ILSSSS-R------------DKTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGT--FVASS----- 153 (289)
T ss_pred EEEEec-C------------CCeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCC--EEEEE-----
Confidence 665553 1 2378899987443 33332111 1124577888865 22221
Q ss_pred CcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....+.+++. ..++.. .+......+..+.|+|++..++.... .+ .|.++|+..
T Consensus 154 ------~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~--~i~i~d~~~ 208 (289)
T cd00200 154 ------SQDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DG--TIKLWDLST 208 (289)
T ss_pred ------cCCCcEEEEEc---cccccceeEecCccccceEEECCCcCEEEEecC--CC--cEEEEECCC
Confidence 11235666675 322332 23333345778999999976665432 23 577778765
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00024 Score=69.08 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=132.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~ 84 (595)
.|.++++.. ......+.. ....+....|+|+++.|+.... ...|.++++.+++ ...+.....
T Consensus 32 ~i~i~~~~~---~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~-- 94 (289)
T cd00200 32 TIKVWDLET---GELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS-- 94 (289)
T ss_pred EEEEEEeeC---CCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC--
Confidence 577888872 223344442 2224568999999988877653 3578888887754 333322221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|+++++.|+.... ...|.++++
T Consensus 95 ---~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~~~ 122 (289)
T cd00200 95 ---YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVWDV 122 (289)
T ss_pred ---cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEEEC
Confidence 4668899999776555310 123444454
Q ss_pred -CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 165 -DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 165 -~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+++. ..+. .......+.|+|+++.|+.... ...+.+||+..++. ..+....
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~~------------ 177 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTGHT------------ 177 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEecCc------------
Confidence 2322 2222 2234568899999887766542 13688899875433 3322110
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEee
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....+.|+|+++. ++.. .....+.+++. ..++... +......+..+.|++++..++...
T Consensus 178 -~~i~~~~~~~~~~~-l~~~------------~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 178 -GEVNSVAFSPDGEK-LLSS------------SSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred -cccceEEECCCcCE-EEEe------------cCCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 11346889999863 4332 11235666675 3223332 223344567789999977665543
Q ss_pred cccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 320 KTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 320 ~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.++ .|+++++.++ .....+... .+.. +.|+++++.++...
T Consensus 239 ~~~--~i~i~~~~~~-~~~~~~~~~~~~i~~---------~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 EDG--TIRVWDLRTG-ECVQTLSGHTNSVTS---------LAWSPDGKRLASGS 280 (289)
T ss_pred CCC--cEEEEEcCCc-eeEEEccccCCcEEE---------EEECCCCCEEEEec
Confidence 123 5777777652 111222211 1222 78888888766543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=78.00 Aligned_cols=230 Identities=15% Similarity=0.206 Sum_probs=120.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....||||.++|.-.... ..+++.|+.+|+.+.......+ -.+++..|-|||.+++...++ +
T Consensus 271 ~V~yi~wSPDdryLlaCg~~----------e~~~lwDv~tgd~~~~y~~~~~---~S~~sc~W~pDg~~~V~Gs~d-r-- 334 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD----------EVLSLWDVDTGDLRHLYPSGLG---FSVSSCAWCPDGFRFVTGSPD-R-- 334 (519)
T ss_pred ceEEEEECCCCCeEEecCch----------HheeeccCCcchhhhhcccCcC---CCcceeEEccCCceeEecCCC-C--
Confidence 47888999999998776532 3388889999998877654421 145689999999997775443 1
Q ss_pred CCCccccCCCCeeeecCccccc-------ccccccccccCcCCccceEEeecceEEEEcCCC-Cee-ecCCCCeeeeeEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNII-------ISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTPAVYTAVEP 182 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~-~lt~~~~~~~~~~ 182 (595)
..+....+|+.. .++++ ++.....++.........++..++... .-+ .++....++++..
T Consensus 335 ----------~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 335 ----------TIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred ----------cEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEE
Confidence 111111122100 00111 110111111111111234555555532 222 3444456789999
Q ss_pred CCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 183 SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
|.||+++++.-. ..++++||++.. +.+.... |.+. |...| -..
T Consensus 404 S~d~k~~LvnL~-------------~qei~LWDl~e~--~lv~kY~----------Ghkq----------~~fiI--rSC 446 (519)
T KOG0293|consen 404 SKDGKLALVNLQ-------------DQEIHLWDLEEN--KLVRKYF----------GHKQ----------GHFII--RSC 446 (519)
T ss_pred cCCCcEEEEEcc-------------cCeeEEeecchh--hHHHHhh----------cccc----------cceEE--Eec
Confidence 999998887743 347999998722 2221111 1100 11000 011
Q ss_pred ecCCCccccc--CCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcE-EEEEEeecccceEEEEEe
Q 007620 263 QDRGDANVEV--SPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 263 ~d~~~~~~~~--~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~d 330 (595)
..+++....+ ...+++|+|+. .. |++- .|......+..++|.|.... ++.. .+++..+||..+
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr--~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASa--sDDgtIRIWg~~ 513 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHR--IS-GKLLAVLSGHSKTVNCVSWNPADPEMFASA--SDDGTIRIWGPS 513 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEc--cC-CceeEeecCCcceeeEEecCCCCHHHhhcc--CCCCeEEEecCC
Confidence 1222211111 23457888875 33 3433 35555556778999997653 5543 344556777543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7e-05 Score=77.08 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=144.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~ 82 (595)
...+||++-. +|+..+|..+. ...+....|+|+|++||.-.. + ..+.++|++..+ .+.+.. ..
T Consensus 196 g~~vylW~~~----s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~--------~--g~v~iwD~~~~k~~~~~~~-~h 259 (484)
T KOG0305|consen 196 GQSVYLWSAS----SGSVTELCSFG-EELVTSVKWSPDGSHLAVGTS--------D--GTVQIWDVKEQKKTRTLRG-SH 259 (484)
T ss_pred cceEEEEecC----CCceEEeEecC-CCceEEEEECCCCCEEEEeec--------C--CeEEEEehhhccccccccC-Cc
Confidence 3578999887 88888998764 447999999999999998764 2 345555876544 233322 11
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
...++.++|. +..+...... + .|...
T Consensus 260 ---~~rvg~laW~--~~~lssGsr~----------------------~---------------------------~I~~~ 285 (484)
T KOG0305|consen 260 ---ASRVGSLAWN--SSVLSSGSRD----------------------G---------------------------KILNH 285 (484)
T ss_pred ---CceeEEEecc--CceEEEecCC----------------------C---------------------------cEEEE
Confidence 1256788998 3322222110 1 11112
Q ss_pred cC-CC-C-eeec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccc
Q 007620 163 SL-DG-T-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (595)
Q Consensus 163 d~-~g-~-~~~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~ 237 (595)
|+ .. . .+.+ .....+..++|++|+++++-..++ ..+++||.... ....+....
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H~--------- 343 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEHT--------- 343 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEeccc---------
Confidence 22 11 0 1101 112235689999999998866542 36888887432 233333321
Q ss_pred cccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEE
Q 007620 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
..+..++|+|=.+..|+. .+|. ....+..++. .+ |+..........+..+.||+..+-|+..-
T Consensus 344 ----aAVKA~awcP~q~~lLAs----GGGs------~D~~i~fwn~--~~-g~~i~~vdtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 344 ----AAVKALAWCPWQSGLLAT----GGGS------ADRCIKFWNT--NT-GARIDSVDTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ----eeeeEeeeCCCccCceEE----cCCC------cccEEEEEEc--CC-CcEecccccCCceeeEEEcCCCCEEEEec
Confidence 224568888877653432 3331 2235666775 33 34444445566788999999988777654
Q ss_pred eecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.+......||.+.-- .....+..+...-. .+.|+|||..++..+.+
T Consensus 407 G~s~n~i~lw~~ps~---~~~~~l~gH~~RVl-------~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM---KLVAELLGHTSRVL-------YLALSPDGETIVTGAAD 452 (484)
T ss_pred CCCCCcEEEEecccc---ceeeeecCCcceeE-------EEEECCCCCEEEEeccc
Confidence 333344567766432 12333433322211 18999999998877643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0016 Score=65.81 Aligned_cols=153 Identities=21% Similarity=0.312 Sum_probs=84.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...++||||+++|-+.. ...++++|-++|+..-...... ...+.+-.+.||||+++|+-...+....
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCCCceEEEecCCceEE
Confidence 4678899999998776653 3678999999988554443221 1122455899999999988764322111
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceE-EeecceEEEEcCCCCeeecCC------------CCeee
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD-YYTTAQLVLGSLDGTAKDFGT------------PAVYT 178 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~lt~------------~~~~~ 178 (595)
.|..... +- .+++. ....-+..... .....+|..+++.|.+.-|.. ...++
T Consensus 261 -----------IWdVs~~-sl--v~t~~--~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 261 -----------IWDVSTN-SL--VSTWP--MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred -----------EEEeecc-ce--EEEee--cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 1111110 00 00000 00000011110 013567777777775443321 12356
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
.+..||||++|+-.+.+ ..|.-|+...+..-.+
T Consensus 325 aLtv~~d~~~i~SgsyD-------------G~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSYD-------------GHINSWDSGSGTSDRL 357 (603)
T ss_pred EEEEcCCCCEEEeeccC-------------ceEEEEecCCcccccc
Confidence 88999999988765432 3577788776654443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00096 Score=66.89 Aligned_cols=90 Identities=16% Similarity=-0.027 Sum_probs=50.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccc--ccccCCCceEEEEEECCCCceE-ecccCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAK-PLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~-~lt~~~ 81 (595)
..+++.|.. +++.. ..++.+..... .+||||+.|+.....-+ ..| +....|-++|+++++.. .|- .+
T Consensus 27 ~~v~ViD~~----~~~v~--g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i~-~p 96 (352)
T TIGR02658 27 TQVYTIDGE----AGRVL--GMTDGGFLPNP-VVASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADIE-LP 96 (352)
T ss_pred ceEEEEECC----CCEEE--EEEEccCCCce-eECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEEc-cC
Confidence 456666665 44332 22234433444 59999998877654100 000 23466888899988743 331 11
Q ss_pred Cc---cccccccceEEecCCcEEEEE
Q 007620 82 DI---CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 82 ~~---~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.. ........+..||||+.|++.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEe
Confidence 10 001112378999999998875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-05 Score=75.07 Aligned_cols=132 Identities=24% Similarity=0.310 Sum_probs=86.3
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
-.+|||+|++||-++. ..|.+.|..+=+..+|+..-+ .+.-+.|+.|...|+.....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeec-------
Confidence 4689999999998863 578888888777777754433 46688999999988885321
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Cee-ecCCC-CeeeeeEECCCCCeEEE
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTP-AVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~-~lt~~-~~~~~~~~SpDg~~l~~ 191 (595)
...+.+.++.. +.. .|..+ ......+|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 01122233311 211 12122 23457899999999998
Q ss_pred EEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++. |..+|-+|.+.+.+...+..- +.+...+++.|||+.
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~p-------------K~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPHP-------------KTNVKGYAFHPDGQF 147 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEeccc-------------ccCceeEEECCCCce
Confidence 864 345888999887776665321 122346788999983
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0015 Score=68.76 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=138.2
Q ss_pred ceeeeE-EEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIG-IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~-~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
|.++++ |+.|. +-....-..... ..+....|+--|.+|||-+. +-.||-|++..+. ...+ +
T Consensus 284 FssG~f~LyelP----~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsE-sYVl---K 345 (893)
T KOG0291|consen 284 FSSGEFGLYELP----DFNLIHSLSISD-QKILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSE-SYVL---K 345 (893)
T ss_pred ecCCeeEEEecC----CceEEEEeeccc-ceeeEEEecccCCEEEEcCC---------ccceEEEEEeecc-ceee---e
Confidence 455555 66665 333322221222 25778899999999999764 2467777766432 2222 1
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
.......+..+..||||++|+-... +|+ +-+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~e----------------------DgK---------------------------VKv 376 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAE----------------------DGK---------------------------VKV 376 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccC----------------------CCc---------------------------EEE
Confidence 1100113568999999998876422 121 112
Q ss_pred EcC-CC-CeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccc
Q 007620 162 GSL-DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (595)
Q Consensus 162 ~d~-~g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~ 237 (595)
+|. +| -..-.++.. .+..+.|+..|+.|+..+.+ ..+-.||+.-.+. +..+. |.
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~-P~-------- 434 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTS-PE-------- 434 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecC-CC--------
Confidence 222 22 122233332 45688999999988877653 2566677664332 33221 10
Q ss_pred cccccCCCCc-eeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEE
Q 007620 238 NSVREGMRSI-SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVN 315 (595)
Q Consensus 238 ~~~~~~~~~~-~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~ 315 (595)
+..+ ...-|-.+.|+.+..+|. =.|++|+. ..|+... |...++.+....|+|+|..|+.
T Consensus 435 ------p~QfscvavD~sGelV~AG~~d~----------F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 435 ------PIQFSCVAVDPSGELVCAGAQDS----------FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ------ceeeeEEEEcCCCCEEEeeccce----------EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 1111 112221122444422221 15777786 3344444 5556777888899999999988
Q ss_pred EEeecccceEEEEEeCCCCCCCcEEE-eecccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 316 ETWYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 316 ~~~~~~~~~~L~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.+|.+ ..++|-+=-.. ++.+.| ...++.. +.+.|||+.|++...+
T Consensus 496 ~SWDk--TVRiW~if~s~--~~vEtl~i~sdvl~---------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 496 GSWDK--TVRIWDIFSSS--GTVETLEIRSDVLA---------VSFRPDGKELAVATLD 541 (893)
T ss_pred ccccc--eEEEEEeeccC--ceeeeEeeccceeE---------EEEcCCCCeEEEEEec
Confidence 88754 34777653332 233444 2344444 8899999999887653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0001 Score=72.95 Aligned_cols=227 Identities=13% Similarity=0.155 Sum_probs=128.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC--CCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES--PDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~--~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+...+|.|.-.. +.++.. ++.-+||.+|-+.+. .|+.. ..- .+....++|+|+..+|++
T Consensus 215 ~I~sv~FHp~~pl-llvaG~-------d~~lrifqvDGk~N~--~lqS~~l~~f----Pi~~a~f~p~G~~~i~~s---- 276 (514)
T KOG2055|consen 215 GITSVQFHPTAPL-LLVAGL-------DGTLRIFQVDGKVNP--KLQSIHLEKF----PIQKAEFAPNGHSVIFTS---- 276 (514)
T ss_pred CceEEEecCCCce-EEEecC-------CCcEEEEEecCccCh--hheeeeeccC----ccceeeecCCCceEEEec----
Confidence 5888999998864 455543 456778877755544 33221 211 356788999999555541
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-----CeeeeeEEC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEPS 183 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-----~~~~~~~~S 183 (595)
| ++..+|.+|+ +++..+|... .....|..|
T Consensus 277 --------------------~------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 277 --------------------G------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred --------------------c------------------------cceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 1 1245778888 6666655432 244689999
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC-CCCceeecCCCeeEEEEEe
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~wspdg~~~l~~~~~ 262 (595)
||+++|++.... ..|+++...+++. |..... ++ ...+.|+.||+. |+..
T Consensus 313 hd~~fia~~G~~-------------G~I~lLhakT~el--i~s~Ki------------eG~v~~~~fsSdsk~-l~~~-- 362 (514)
T KOG2055|consen 313 HDSNFIAIAGNN-------------GHIHLLHAKTKEL--ITSFKI------------EGVVSDFTFSSDSKE-LLAS-- 362 (514)
T ss_pred CCCCeEEEcccC-------------ceEEeehhhhhhh--hheeee------------ccEEeeEEEecCCcE-EEEE--
Confidence 999999988643 2466666554431 111110 11 356889989863 4332
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccc--cceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRF--RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~--~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
.....+|++++ . ....+. ..++.+ ..++-|++|.+|+..+ +.+...||-.+-.-.+..|
T Consensus 363 ----------~~~GeV~v~nl---~--~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS--~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 363 ----------GGTGEVYVWNL---R--QNSCLHRFVDDGSVHGTSLCISLNGSYLATGS--DSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ----------cCCceEEEEec---C--CcceEEEEeecCccceeeeeecCCCceEEecc--CcceEEEeccchhhccCCC
Confidence 22347788886 2 323222 223332 3566678888777654 3454455543311111456
Q ss_pred EEEeec-ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 339 RVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 339 ~~l~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+.+..- +..-.+. .+++++|++.|++.+.
T Consensus 426 kPik~~dNLtt~It-----sl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 426 KPIKTVDNLTTAIT-----SLQFNHDAQILAIASR 455 (514)
T ss_pred Cchhhhhhhheeee-----eeeeCcchhhhhhhhh
Confidence 665211 1111111 2889999998876653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=73.33 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=117.3
Q ss_pred eeEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.+.||. +++ .+++. .+.......+||||++|+.... ...++.++|.++.+..+........
T Consensus 59 ~vsviD~~----~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 59 TVSVIDLA----TGKVVATIK---VGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEEEEETT----SSSEEEEEE----SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE-
T ss_pred eEEEEECC----cccEEEEEe---cCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeeccccccc
Confidence 46667776 343 34454 4446788999999998855442 2478999999888754432211100
Q ss_pred ---ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 85 ---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 85 ---~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
....+..+.-+|.....++... ...++|+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lk------------------------------------------------d~~~I~v 154 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLK------------------------------------------------DTGEIWV 154 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEET------------------------------------------------TTTEEEE
T ss_pred ccccCCCceeEEecCCCCEEEEEEc------------------------------------------------cCCeEEE
Confidence 0001122333344443333210 1357888
Q ss_pred EcC-CCC---eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccC-CCCccCCcc
Q 007620 162 GSL-DGT---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVC 236 (595)
Q Consensus 162 ~d~-~g~---~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~-~~~~~~~~~ 236 (595)
+|. +.. .+.+..+.+..+..|+|||++++...... ..+-++|.++++...+.+. ......+.
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~- 221 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPG- 221 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTE-
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccccc------------ceeEEEeeccceEEEEeecccccccccc-
Confidence 887 332 22333344566889999999998876543 2778889887665443221 11000000
Q ss_pred ccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEE
Q 007620 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 237 ~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
.....-...+.|...+....+ +..... +.+.+++. .+-...+.+. ..+....+.-+||++.+..+
T Consensus 222 -~~~php~~g~vw~~~~~~~~~-~~~ig~----------~~v~v~d~--~~wkvv~~I~-~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 222 -ANFPHPGFGPVWATSGLGYFA-IPLIGT----------DPVSVHDD--YAWKVVKTIP-TQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp -EEEEETTTEEEEEEEBSSSSE-EEEEE------------TTT-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE
T ss_pred -ccccCCCcceEEeecccccee-cccccC----------Cccccchh--hcCeEEEEEE-CCCCcceeecCCCCccEEee
Confidence 000000011234322211100 000000 11111221 0110112222 22222556779999987766
Q ss_pred EeecccceEEEEEeCCCCCCCcEEEe-ecc--cccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 317 TWYKTSQTRTWLVCPGSKDVAPRVLF-DRV--FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 317 ~~~~~~~~~L~~~d~~~~~~~~~~l~-~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.........|.++|..+.+ ..+.+. ... +.+ +.|++||+.+|++..+
T Consensus 287 ~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~~~~h---------~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLK-VVKTITPGPGKRVVH---------MEFNPDGKEVWVSVWD 336 (369)
T ss_dssp -TT-SSHT-EEEEECCGTE-EEE-HHHHHT--EEE---------EEE-TTSSEEEEEEE-
T ss_pred ccCCCCCceEEEEECcCcc-eeEEEeccCCCcEec---------cEECCCCCEEEEEEec
Confidence 2222234589999988731 111221 111 323 7999999999998764
|
... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.1e-05 Score=82.08 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=38.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC------C--CCceEecccCCC----ccccccccceEEecCCc
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGEAKPLFESPD----ICLNAVFGSFVWVNNST 99 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~------~--~g~~~~lt~~~~----~~~~~~~~~~~Wspdg~ 99 (595)
.+...+|||||++||+-+. +....||-... - +|...-+..... .+....+..+.|+||+.
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 4778899999999998663 34456676652 0 111111110000 00112456899999999
Q ss_pred EEEEE
Q 007620 100 LLIFT 104 (595)
Q Consensus 100 ~l~~~ 104 (595)
+|+-.
T Consensus 143 ~lvS~ 147 (942)
T KOG0973|consen 143 LLVSV 147 (942)
T ss_pred EEEEe
Confidence 88775
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0042 Score=63.30 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=107.8
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEecc---CCCCccCCccccccccCCCCceeec
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCD---LPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
....++.+|||++|+++.... ..+.++++.. +....... .......+. .-.....-...++|
T Consensus 88 ~p~~i~~~~~g~~l~vany~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~--rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD--RQEGPHPHQVVFSP 153 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTT--TTSSTCEEEEEE-T
T ss_pred CcEEEEEecCCCEEEEEEccC------------CeEEEEEccCCcccceeeeecccCCCCCccc--ccccccceeEEECC
Confidence 334688999999999886432 3566776653 44333211 100000000 00001122467899
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee---cc-ccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~---l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
||+. |+.. |- ..+.+++++.+. .+++... +. ........+.|+|||+.++... .... .|.
T Consensus 154 dg~~-v~v~---dl--------G~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~--~v~ 217 (345)
T PF10282_consen 154 DGRF-VYVP---DL--------GADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSN--TVS 217 (345)
T ss_dssp TSSE-EEEE---ET--------TTTEEEEEEE-T-TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTT--EEE
T ss_pred CCCE-EEEE---ec--------CCCEEEEEEEeC-CCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCC--cEE
Confidence 9983 4332 22 234555555411 1112222 11 1112245688999998654432 2223 455
Q ss_pred EEeCCCCCCCcEEEeecccc-cccC-CCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC
Q 007620 328 LVCPGSKDVAPRVLFDRVFE-NVYS-DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (595)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (595)
.++++...+..+.+...... ..+. ......+..+|||++||+..... ....+| .+|..+|
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf----------------~~d~~~g 279 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVF----------------DLDPATG 279 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEE----------------EECTTTT
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEE----------------EEecCCC
Confidence 55555211333333111000 0000 00011267899999998876431 122222 3444566
Q ss_pred ceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEec
Q 007620 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (595)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~ 469 (595)
+.+.+-..... -..+.. ..+++++++|++.....+. -.+|.+|.++|+++.+..
T Consensus 280 ~l~~~~~~~~~--G~~Pr~-------~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 280 TLTLVQTVPTG--GKFPRH-------FAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TEEEEEEEEES--SSSEEE-------EEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEEeCC--CCCccE-------EEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcEEEecc
Confidence 66554222110 011222 3578899988876654443 446667777888777654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=75.55 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=81.2
Q ss_pred eEEEecCCCCCCCCceeeecCCCCC--cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
+|.+||. +++..+|..+-+.. .......||||+.||+... ...|+++...+++. |+..+
T Consensus 282 ~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----------~G~I~lLhakT~el--i~s~K--- 342 (514)
T KOG2055|consen 282 LYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----------NGHIHLLHAKTKEL--ITSFK--- 342 (514)
T ss_pred EEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEccc----------CceEEeehhhhhhh--hheee---
Confidence 7888998 77776665322222 4567789999998888643 47899998888873 32222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
+++.++.+.|+.||+.|+... ..+++|++|+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-------------------------------------------------~~GeV~v~nl 373 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-------------------------------------------------GTGEVYVWNL 373 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-------------------------------------------------CCceEEEEec
Confidence 233678999999999877651 1346788888
Q ss_pred CC--CeeecCCCC-ee-eeeEECCCCCeEEEEEc
Q 007620 165 DG--TAKDFGTPA-VY-TAVEPSPDQKYVLITSM 194 (595)
Q Consensus 165 ~g--~~~~lt~~~-~~-~~~~~SpDg~~l~~~~~ 194 (595)
.. -.....+.+ .. ..++.|++|++++..+.
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 43 233444333 32 47899999998887753
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0012 Score=69.81 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=109.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc---eEecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
.+....|||||+.|+.... ++...+|. +.+++ .+.+... ...+..+.|+|||+.|+-...+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~~~i~~~~--~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------DGLIRIWK--LEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------CCcEEEee--cccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5667899999999888754 23344444 44444 2222111 1257799999999966554211
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C-C-Ceeec-CCCCeeeeeEECC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D-G-TAKDF-GTPAVYTAVEPSP 184 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~-g-~~~~l-t~~~~~~~~~~Sp 184 (595)
.+|.++++ . + ..+.| .....+..++|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 23444444 2 2 23334 2334567899999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
+|+.|+..+. ...+.+||+.+++. +.+... ..+.....+++|+.. |+..
T Consensus 257 ~g~~i~Sgs~-------------D~tvriWd~~~~~~~~~l~~h-------------s~~is~~~f~~d~~~-l~s~--- 306 (456)
T KOG0266|consen 257 DGNLLVSGSD-------------DGTVRIWDVRTGECVRKLKGH-------------SDGISGLAFSPDGNL-LVSA--- 306 (456)
T ss_pred CCCEEEEecC-------------CCcEEEEeccCCeEEEeeecc-------------CCceEEEEECCCCCE-EEEc---
Confidence 9955554433 23788999987554 444322 122345678888873 2211
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCc---eeccccCc--cccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....+.+||. ..+.. +.+..... ......|+|+++.++... .++ .|-++|+..
T Consensus 307 ---------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~--~d~--~~~~w~l~~ 365 (456)
T KOG0266|consen 307 ---------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS--LDR--TLKLWDLRS 365 (456)
T ss_pred ---------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec--CCC--eEEEEEccC
Confidence 22346777886 43341 23333222 367889999999876653 223 344455554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0012 Score=60.62 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=131.1
Q ss_pred CCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
+|.-.+--+.+.. .++...+.||++.||... ..+|-++|+.++.+..+...... ...+....|--|
T Consensus 29 tG~C~rTiqh~ds-qVNrLeiTpdk~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~h--~kNVtaVgF~~d 94 (311)
T KOG0315|consen 29 TGICSRTIQHPDS-QVNRLEITPDKKDLAAAG-----------NQHVRLYDLNSNNPNPVATFEGH--TKNVTAVGFQCD 94 (311)
T ss_pred cCeEEEEEecCcc-ceeeEEEcCCcchhhhcc-----------CCeeEEEEccCCCCCceeEEecc--CCceEEEEEeec
Confidence 4443332234555 788999999999988753 47788889999887655433221 124667888899
Q ss_pred CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCee
Q 007620 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVY 177 (595)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~ 177 (595)
|++++-... +| ...||-+..-...+.+....-+
T Consensus 95 grWMyTgse----------------------Dg-------------------------t~kIWdlR~~~~qR~~~~~spV 127 (311)
T KOG0315|consen 95 GRWMYTGSE----------------------DG-------------------------TVKIWDLRSLSCQRNYQHNSPV 127 (311)
T ss_pred CeEEEecCC----------------------Cc-------------------------eEEEEeccCcccchhccCCCCc
Confidence 998665321 11 1112211111111222222334
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
..+...|+...|+.... ...|++||+.... ..++...+. ...+.+..-|||+.
T Consensus 128 n~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~~------------~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPEDD------------TSIQSLTVMPDGSM- 181 (311)
T ss_pred ceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCCC------------cceeeEEEcCCCcE-
Confidence 57788898777765532 2479999987553 333322111 11245666788873
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccc---cCccccceeecCCCcEEEEEEeecccceEEEEEe
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d 330 (595)
|+-+ +.+..+|+|++ ..+.... .+.+ ..+.+..-.+|||++.|+..+.. . .+++.+
T Consensus 182 l~a~------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd--k--tv~iwn 243 (311)
T KOG0315|consen 182 LAAA------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD--K--TVKIWN 243 (311)
T ss_pred EEEe------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC--c--eEEEEe
Confidence 3322 44567888886 2211111 2222 22334567799999998875432 2 344444
Q ss_pred CCCCCCCcEEEe--ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 331 PGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 331 ~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.++--+-.+.|. ++.+.+ -.+|.||++|+...
T Consensus 244 ~~~~~kle~~l~gh~rWvWd---------c~FS~dg~YlvTas 277 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWD---------CAFSADGEYLVTAS 277 (311)
T ss_pred cCCceeeEEEeecCCceEEe---------eeeccCccEEEecC
Confidence 444201113332 234444 56788999876554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=68.86 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=138.3
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
..+....|+-||..||+-+. + ..+-+++..++.+..+-..+. ++-++.|+.+|.+|+-..-+...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~--------~--G~~riw~~~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSE--------D--GEARIWNKDGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred CCcceEEecCCCCeEEEeec--------C--cEEEEEecCchhhhhhhccCC-----ceEEEEEcCCCCEEEeccCCccE
Confidence 35778999999999998653 2 344555766666666655444 67799999999988775322211
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEe-ecceEEEEcCCC--Ceee-cCCCCeeeeeEECCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSLDG--TAKD-FGTPAVYTAVEPSPDQ 186 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~g--~~~~-lt~~~~~~~~~~SpDg 186 (595)
-+.. .-.|...+... -.. .... ++ .+.+..-|... ....|+++-+++ -.+. +.....+..+.|.|-|
T Consensus 301 ilwd---~~~g~~~q~f~-~~s--~~~l-DV--dW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 301 ILWD---AHTGTVKQQFE-FHS--APAL-DV--DWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred EEEe---ccCceEEEeee-ecc--CCcc-ce--EEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 1000 00000000000 000 0000 00 00011111110 223455555533 2222 2333345689999999
Q ss_pred CeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
+-|+-.+.+ ..+-+|+.. +.....+... ......+.|+|+|.. .. ..-.
T Consensus 372 ~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v--~~--n~~~ 421 (524)
T KOG0273|consen 372 SLLASCSDD-------------GTLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPV--TS--NPNM 421 (524)
T ss_pred ceEEEecCC-------------CeeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCc--cC--CCcC
Confidence 988766543 245566643 2222222111 111234678888762 00 0011
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~ 345 (595)
+...........+.+||+ ..|-....+++....+..+.|||+|+++++.+. ++ .+.+.+..++ .-.+...+..
T Consensus 422 ~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~--dg--~V~iws~~~~-~l~~s~~~~~ 494 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL--DG--CVHIWSTKTG-KLVKSYQGTG 494 (524)
T ss_pred CceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCC--CC--eeEeccccch-heeEeecCCC
Confidence 111111234456677786 333233446566667888999999999988652 23 4555555552 1112222221
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 346 FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 346 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
. ...++|+.+|..|.....+
T Consensus 495 ~--------Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 495 G--------IFELCWNAAGDKLGACASD 514 (524)
T ss_pred e--------EEEEEEcCCCCEEEEEecC
Confidence 1 1238999999988877643
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=71.96 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=108.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+-..+||++|++||-.+. +...-+|.+..+..- .+.+..... ++..+.||||+++|+-...+
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~~-- 290 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGFD-- 290 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecCch--
Confidence 5788999999999988764 345667777655430 222222222 57789999999987653111
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC-C--CeeeeeEECCC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P--AVYTAVEPSPD 185 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~-~--~~~~~~~~SpD 185 (595)
..+.+.|+ +|+.+.+-. . ......+|-||
T Consensus 291 -----------------------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 291 -----------------------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred -----------------------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 11344455 454443322 1 23458899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|.+++..+.+ ..+..||++|..... +...+. .....++.++||+. ++.+ ..
T Consensus 324 g~~~V~Gs~d-------------r~i~~wdlDgn~~~~---W~gvr~---------~~v~dlait~Dgk~-vl~v-~~-- 374 (519)
T KOG0293|consen 324 GFRFVTGSPD-------------RTIIMWDLDGNILGN---WEGVRD---------PKVHDLAITYDGKY-VLLV-TV-- 374 (519)
T ss_pred CceeEecCCC-------------CcEEEecCCcchhhc---cccccc---------ceeEEEEEcCCCcE-EEEE-ec--
Confidence 9997665432 367888888764211 111000 01235677889985 4343 11
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
...+.+++. .....+.+......+..+..|.||+.+...- .. ..+.+.|+..
T Consensus 375 ---------d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL--~~--qei~LWDl~e 426 (519)
T KOG0293|consen 375 ---------DKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNL--QD--QEIHLWDLEE 426 (519)
T ss_pred ---------ccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEc--cc--CeeEEeecch
Confidence 123444443 2112223555555677888999998533321 11 2455567653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0037 Score=63.30 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=43.4
Q ss_pred ccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007620 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (595)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 380 (595)
+..+.+||||..++.... ++ .++++|-.+++ ....|-+..... .+...++|+||++.++.... +...+
T Consensus 193 V~~VRysPDG~~Fat~gs--Dg--ki~iyDGktge-~vg~l~~~~aHk----GsIfalsWsPDs~~~~T~Sa---Dkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGS--DG--KIYIYDGKTGE-KVGELEDSDAHK----GSIFALSWSPDSTQFLTVSA---DKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecC--Cc--cEEEEcCCCcc-EEEEecCCCCcc----ccEEEEEECCCCceEEEecC---CceEE
Confidence 457889999998776542 23 78999977743 222232211110 11134899999998876653 34567
Q ss_pred EEEe
Q 007620 381 ILLN 384 (595)
Q Consensus 381 l~~~ 384 (595)
+|-+
T Consensus 261 IWdV 264 (603)
T KOG0318|consen 261 IWDV 264 (603)
T ss_pred EEEe
Confidence 7743
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-05 Score=79.30 Aligned_cols=121 Identities=19% Similarity=0.157 Sum_probs=87.0
Q ss_pred ccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007620 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (595)
Q Consensus 436 ~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (595)
.+++.+++...+...|+.+|+.++.+.+++.+-... ...+...+..|.+..++.||.+|+.+++. .+.+.. +.|+
T Consensus 349 ~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p-~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pT 423 (648)
T COG1505 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQP-VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPT 423 (648)
T ss_pred CCCcEEEEEeecccCCCceEEEecCCceehhhhhcc-CCcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCce
Confidence 366788889999999999999999888888777653 33444556889999999999999999998 775542 4599
Q ss_pred EEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCchhh
Q 007620 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRYL 579 (595)
Q Consensus 516 vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~~ 579 (595)
+||.|+|+ +|.-.|. |.. ..-+|..+|.+-++ .++| ||.|++...-
T Consensus 424 ll~aYGGF--------~vsltP~-fs~----~~~~WLerGg~~v~----ANIR-GGGEfGp~WH 469 (648)
T COG1505 424 LLYAYGGF--------NISLTPR-FSG----SRKLWLERGGVFVL----ANIR-GGGEFGPEWH 469 (648)
T ss_pred EEEecccc--------ccccCCc-cch----hhHHHHhcCCeEEE----Eecc-cCCccCHHHH
Confidence 99999763 2444443 221 12577777655555 3555 4667877653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0029 Score=58.61 Aligned_cols=226 Identities=13% Similarity=0.207 Sum_probs=114.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|.-||.+||-.+. ++...+|-++. . +.++..........+..+.|.|...-+++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~--~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLER--D--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecc--h--hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 4778999999999988764 34455665544 3 223222221112245688999776655554221
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l 189 (595)
+ ..+.++|. .++... +........+.|||+|+++
T Consensus 86 ------------------d--------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 86 ------------------D--------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred ------------------C--------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 1 11233444 444332 2222222358999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
++..... .|..+|...-++..-.+.+ ...-...|+-++. ++++. ...|.
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~~~-------------~e~ne~~w~~~nd--~Fflt-~GlG~-- 170 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQFK-------------FEVNEISWNNSND--LFFLT-NGLGC-- 170 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhccc-------------ceeeeeeecCCCC--EEEEe-cCCce--
Confidence 9885322 4555565433222211110 0112456664433 65552 11110
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe--ecccc
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFE 347 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~--~~~~~ 347 (595)
-.|+.+.. ++ ....|.......-.+.|+|+|+.|+..+. +....|| |++.- .=.|.+. +..+.
T Consensus 171 ------v~ILsyps--Lk--pv~si~AH~snCicI~f~p~GryfA~GsA--DAlvSLW--D~~EL-iC~R~isRldwpVR 235 (313)
T KOG1407|consen 171 ------VEILSYPS--LK--PVQSIKAHPSNCICIEFDPDGRYFATGSA--DALVSLW--DVDEL-ICERCISRLDWPVR 235 (313)
T ss_pred ------EEEEeccc--cc--cccccccCCcceEEEEECCCCceEeeccc--cceeecc--ChhHh-hhheeeccccCceE
Confidence 12222221 11 12223334444567899999999887542 2333555 44331 1124442 44444
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEee
Q 007620 348 NVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
- +++|-||+.|+-.++
T Consensus 236 T---------lSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 236 T---------LSFSHDGRMLASASE 251 (313)
T ss_pred E---------EEeccCcceeeccCc
Confidence 3 789999998876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.015 Score=59.47 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=43.6
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~ 83 (595)
.|.+.|.. +.+. ..+.. .+.......+||||+++ |+.++ ...|-++|+.+++.. ++ ....
T Consensus 17 ~v~viD~~----t~~~~~~i~~--~~~~h~~~~~s~Dgr~~-yv~~r---------dg~vsviD~~~~~~v~~i-~~G~- 78 (369)
T PF02239_consen 17 SVAVIDGA----TNKVVARIPT--GGAPHAGLKFSPDGRYL-YVANR---------DGTVSVIDLATGKVVATI-KVGG- 78 (369)
T ss_dssp EEEEEETT----T-SEEEEEE---STTEEEEEE-TT-SSEE-EEEET---------TSEEEEEETTSSSEEEEE-E-SS-
T ss_pred EEEEEECC----CCeEEEEEcC--CCCceeEEEecCCCCEE-EEEcC---------CCeEEEEECCcccEEEEE-ecCC-
Confidence 46677766 4433 34431 12123457899999985 54554 257999999988743 33 1111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+..|+||++|+..
T Consensus 79 ----~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 79 ----NPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp ----EEEEEEE--TTTEEEEE
T ss_pred ----CcceEEEcCCCCEEEEE
Confidence 33478999999998775
|
... |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=72.05 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=111.6
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
..+|+++.. .++..+|.|+|++|+-.+- +..-.|| |+.++....+-... ..++.+++|.+||..
T Consensus 254 l~~l~gH~~--RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGH----s~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 254 LQDLEGHLA--RVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGH----SKGVFSIAFQPDGSL 317 (459)
T ss_pred hhhhhcchh--hheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhccc----ccccceeEecCCCce
Confidence 345565443 5899999999998877653 4456677 87777644332211 225779999999997
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCC-CCee
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVY 177 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~-~~~~ 177 (595)
++-...+. ..+| +|+ +|. +.-|.. -..+
T Consensus 318 ~~tGGlD~-----------------------------------------------~~Rv--WDlRtgr~im~L~gH~k~I 348 (459)
T KOG0272|consen 318 AATGGLDS-----------------------------------------------LGRV--WDLRTGRCIMFLAGHIKEI 348 (459)
T ss_pred eeccCccc-----------------------------------------------hhhe--eecccCcEEEEecccccce
Confidence 65421110 0111 222 331 111111 1234
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeE
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (595)
.+++|||+|-.|+-.+.+ ...-+||+..... +...|.. ..-+....++|+....|
T Consensus 349 ~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH----------~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAH----------SNLVSQVKYSPQEGYFL 403 (459)
T ss_pred eeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceecccc----------cchhhheEecccCCeEE
Confidence 578999999998866542 2566788875433 3322221 12244577888544323
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
+-. ...+.+-+|.. .+....+.|...++.+.....|+|+..++...+. ...+||
T Consensus 404 ~Ta------------syD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW 457 (459)
T KOG0272|consen 404 VTA------------SYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLW 457 (459)
T ss_pred EEc------------ccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeec
Confidence 222 12223333332 1223445566667778888999999887766532 223555
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00092 Score=65.73 Aligned_cols=194 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCC--cEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS--TLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg--~~l~~~~~~~~ 109 (595)
.++...||+||+.||-.+= .+..+||-++ +....+...... ..++...|.|.. ..|+-.+.
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~----~~v~~~~fhP~~~~~~lat~s~--- 239 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHT----SRVGAAVFHPVDSDLNLATASA--- 239 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEeccc----cceeeEEEccCCCccceeeecc---
Confidence 3556889999999887553 4667888544 444444432211 157789999973 34443311
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCC-CCeeeeeEECCCCCe
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT-PAVYTAVEPSPDQKY 188 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~-~~~~~~~~~SpDg~~ 188 (595)
+| ...||.++-+..+..|+. ...+..++|.|+|++
T Consensus 240 -------------------Dg-------------------------tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 240 -------------------DG-------------------------TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred -------------------CC-------------------------ceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 11 122333322222333332 223557899999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
|+-.+.+. .--+||+.++..-.+. .|+..++..++|.+||. |+.- .+-
T Consensus 276 L~TasfD~-------------tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGS--L~~t---GGl-- 323 (459)
T KOG0272|consen 276 LGTASFDS-------------TWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGS--LAAT---GGL-- 323 (459)
T ss_pred eeeccccc-------------chhhcccccchhhHhh------------cccccccceeEecCCCc--eeec---cCc--
Confidence 98776432 2336788776543322 12334566789999998 3221 111
Q ss_pred ccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
...-.+||+ -+| .-.. |......+..+.|||+|-.++..+. +...++|-+
T Consensus 324 ------D~~~RvWDl--Rtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDL 374 (459)
T KOG0272|consen 324 ------DSLGRVWDL--RTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDL 374 (459)
T ss_pred ------cchhheeec--ccC-cEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeee
Confidence 112233454 122 2221 2222334667999999988877542 233456643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00038 Score=73.52 Aligned_cols=203 Identities=18% Similarity=0.204 Sum_probs=120.9
Q ss_pred EecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccc
Q 007620 10 HRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (595)
Q Consensus 10 ~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (595)
.||.++.+.+..+.+.++.+ .+...+||||-+.|.=.+. +....||-++. .....+.. .. +.++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t--~s~~V~y~-GH---~~PV 496 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDT--WSCLVIYK-GH---LAPV 496 (707)
T ss_pred hhhccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeeccc--ceeEEEec-CC---Ccce
Confidence 46666677888888886554 4889999999997765542 46778886654 33333322 11 1234
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCee
Q 007620 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK 169 (595)
Q Consensus 90 ~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 169 (595)
-..+|+|-|- +|..-. +| .+.+||..|-..-.|
T Consensus 497 wdV~F~P~Gy--YFatas--------------------------------------~D-------~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 497 WDVQFAPRGY--YFATAS--------------------------------------HD-------QTARLWSTDHNKPLR 529 (707)
T ss_pred eeEEecCCce--EEEecC--------------------------------------CC-------ceeeeeecccCCchh
Confidence 4567778774 443110 11 134555554322222
Q ss_pred ecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCc
Q 007620 170 DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSI 247 (595)
Q Consensus 170 ~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (595)
.+... ..+.-+.|.|+..+++-.+.+ ..+-+||+-+| .+|..... ..-...+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~GH-------------~~~V~al 583 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTGH-------------KGPVTAL 583 (707)
T ss_pred hhcccccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecCC-------------CCceEEE
Confidence 22211 123357899999998766432 36788997655 45554332 1223468
Q ss_pred eeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEE
Q 007620 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 248 ~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
.+||+|+. |+.. .....+.+||+ .+|... ++....+.+..+.||.||..|+...
T Consensus 584 ~~Sp~Gr~-LaSg------------~ed~~I~iWDl---~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 584 AFSPCGRY-LASG------------DEDGLIKIWDL---ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEcCCCce-Eeec------------ccCCcEEEEEc---CCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence 89999983 3221 22346788897 433433 4445566778899999999888764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.024 Score=58.03 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=64.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
...-.+|||-|.+|+-.-.+ +-.|| ||+. .++....+ .++.-..+||..++|+-.++....
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~---------GI~lW-----GG~~f~r~~RF~H----p~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ---------GIALW-----GGESFDRIQRFYH----PGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeeEEecCCceEEEEEecc---------ceeee-----cCccHHHHHhccC----CCceeeecCCccceEEEecCCccc
Confidence 35568999999998776543 46777 5542 23322222 145677899999988765432111
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-c--CCCCe--eeeeEECC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F--GTPAV--YTAVEPSP 184 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-l--t~~~~--~~~~~~Sp 184 (595)
. ..+ .+ ...+|.+.|+ +|..++ . ....+ -.-+.||-
T Consensus 274 ~----------------~~~---------------d~-------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 274 V----------------EED---------------DN-------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH 315 (698)
T ss_pred c----------------Ccc---------------cC-------CCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence 0 000 01 2368899999 885432 2 12222 23689999
Q ss_pred CCCeEEEEEc
Q 007620 185 DQKYVLITSM 194 (595)
Q Consensus 185 Dg~~l~~~~~ 194 (595)
|+|+++....
T Consensus 316 DdKy~Arm~~ 325 (698)
T KOG2314|consen 316 DDKYFARMTG 325 (698)
T ss_pred CCceeEEecc
Confidence 9999987754
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=69.10 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=51.2
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEE
Q 007620 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (595)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~ 102 (595)
+|...++...+...+|.+||..++-.+ -+...|.+.|+++|...+|-.... ++++.+.|||||..|+
T Consensus 188 qvl~~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~gl----gg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 188 QVLQDPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGL----GGFSLLKWSPDGDVLF 254 (445)
T ss_pred hheeCCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCC----CceeeEEEcCCCCEEE
Confidence 444456666788899999999876654 245778888999998777742221 2577899999999877
Q ss_pred EEe
Q 007620 103 FTI 105 (595)
Q Consensus 103 ~~~ 105 (595)
-..
T Consensus 255 aAt 257 (445)
T KOG2139|consen 255 AAT 257 (445)
T ss_pred Eec
Confidence 753
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0008 Score=65.30 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=37.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCCccccccccceEEec-----CCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN-----NSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wsp-----dg~~l~~ 103 (595)
.+....|||||++||--+. ...|-++|+++|+. +.|..... .+..++|-| ..++|+-
T Consensus 159 WVlcvawsPDgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred EEEEEEECCCcchhhcccc----------CCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceec
Confidence 5778899999999987543 35666679888763 45544433 466777754 4554444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.015 Score=60.94 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECC--CCce-EecccCCCccccc---cccceEEecCCcEEEEEecCCCCCCC
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICLNA---VFGSFVWVNNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~-~~lt~~~~~~~~~---~~~~~~Wspdg~~l~~~~~~~~~~~~ 113 (595)
..|.+..|....+. ....-+|+.... .|.. +.|.+........ ..+.+.+||||++|+|....
T Consensus 76 ~~g~~~y~~~~~~~-----~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~------ 144 (414)
T PF02897_consen 76 RRGGYYYYSRNQGG-----KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD------ 144 (414)
T ss_dssp EETTEEEEEEE-SS------SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE------
T ss_pred EECCeEEEEEEcCC-----CceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC------
Confidence 35778877765431 233457777766 3443 4554432211111 12367889999999997421
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeEEE
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l~~ 191 (595)
.|. ....|+++|+ +|+... .........+.|++||+.++|
T Consensus 145 ---------------~G~-----------------------e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 145 ---------------GGS-----------------------EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp ---------------TTS-----------------------SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred ---------------CCC-----------------------ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence 121 1357889999 664321 111112224899999999999
Q ss_pred EEccc
Q 007620 192 TSMHR 196 (595)
Q Consensus 192 ~~~~~ 196 (595)
+....
T Consensus 187 ~~~~~ 191 (414)
T PF02897_consen 187 TRFDE 191 (414)
T ss_dssp EECST
T ss_pred EEeCc
Confidence 98654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.016 Score=59.39 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=47.1
Q ss_pred CcccceEEccCCCEEEEEEecc---cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 31 AKINFVSWSPDGKRIAFSVRVD---EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~---~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+....|||.-++|+--+... ++++ ....+|.++|+.+|...+-+...... .....-+.||.|++.++.+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d--~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD--NEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc--CCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEe
Confidence 3688899999999886655431 1111 34578999999999876665442110 0012367999999988886
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.8e-05 Score=49.88 Aligned_cols=38 Identities=26% Similarity=0.573 Sum_probs=26.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v 66 (595)
+|+|..+. ....|.|||||++|+|++.+.. .+..+||+
T Consensus 2 ~~~t~~~~--~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPG--DDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES-SSS--SEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccCCc--cccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 46774333 5889999999999999998731 25678885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.031 Score=59.49 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=75.7
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..++|+|++..++++... ...|.+||+.++.. ..+.... .....+.|+|||.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spdG~ 181 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLDGS 181 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECCCC
Confidence 45678999997655555432 23688999886643 3332111 1134688999987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
. |+.. .....+.+||. .++.....+.... .......|++++..++...........|.++|+..
T Consensus 182 l-Latg------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 182 L-LCTT------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred E-EEEe------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 3221 12236777785 2321222232222 22345789988766544321111112466667765
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ..+..+.+.+.. .+...+.|+++++.++...
T Consensus 247 ~-~~p~~~~~~d~~-----~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 247 M-ASPYSTVDLDQS-----SALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred C-CCceeEeccCCC-----CceEEEEEcCCCCEEEEEE
Confidence 3 122222221111 1111256788888776654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.016 Score=55.97 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=102.5
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe-cCCcEEEEEecCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws-pdg~~l~~~~~~~~~~~~ 113 (595)
.|.|.|....|+|+-. ...+|+.+++++++...+.. .. ...+... ++|+.++.. .
T Consensus 4 gp~~d~~~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~-~~------~~G~~~~~~~g~l~v~~-~------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDI---------PGGRIYRVDPDTGEVEVIDL-PG------PNGMAFDRPDGRLYVAD-S------- 59 (246)
T ss_dssp EEEEETTTTEEEEEET---------TTTEEEEEETTTTEEEEEES-SS------EEEEEEECTTSEEEEEE-T-------
T ss_pred ceEEECCCCEEEEEEc---------CCCEEEEEECCCCeEEEEec-CC------CceEEEEccCCEEEEEE-c-------
Confidence 5999997778888743 35789999999887655432 21 2345555 665543332 1
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC----C-C--eeeeeEECCC
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----P-A--VYTAVEPSPD 185 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~----~-~--~~~~~~~SpD 185 (595)
..+.++|+ +|+.+.+.. . . ...++++.||
T Consensus 60 -------------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~ 96 (246)
T PF08450_consen 60 -------------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD 96 (246)
T ss_dssp -------------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT
T ss_pred -------------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC
Confidence 11222344 333333211 1 1 3358899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+ |+|+.......... ....+++++.+ ++.+.+...- .....+.|+||++. ||+..
T Consensus 97 G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~~-------------~~pNGi~~s~dg~~-lyv~d---- 152 (246)
T PF08450_consen 97 GN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADGL-------------GFPNGIAFSPDGKT-LYVAD---- 152 (246)
T ss_dssp S--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEEE-------------SSEEEEEEETTSSE-EEEEE----
T ss_pred CC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecCc-------------ccccceEECCcchh-eeecc----
Confidence 98 77775432210000 01579999988 5544443210 01235889999983 65542
Q ss_pred CCcccccCCcceEEeccCCCCCCCCc---eeccccCc---cccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~~~---~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....++.++.+ ..+++. +.+..... ....+.+..+|..++... ...+|++++.++
T Consensus 153 -------s~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~~~p~G 214 (246)
T PF08450_consen 153 -------SFNGRIWRFDLD-ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVVFDPDG 214 (246)
T ss_dssp -------TTTTEEEEEEEE-TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEEEETTS
T ss_pred -------cccceeEEEecc-ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEEECCCc
Confidence 223456655540 122211 12222221 244566777787655432 233899999886
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0041 Score=59.16 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=32.4
Q ss_pred ccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE---eecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL---FDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
......||.|..|+.... ..|..+...+++ ...++ ....... ++|+++|++++..
T Consensus 334 p~RL~lsP~g~~lA~s~g-----s~l~~~~se~g~-~~~~~e~~h~~~Is~---------is~~~~g~~~atc 391 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG-----SDLKVFASEDGK-DYPELEDIHSTTISS---------ISYSSDGKYIATC 391 (420)
T ss_pred ceEEEeCCCCcEEEeecC-----CceEEEEcccCc-cchhHHHhhcCceee---------EEecCCCcEEeee
Confidence 346778999987766431 256666665532 11112 1222333 8999999987654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.017 Score=59.23 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=130.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCC--EEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
..+++.++.. ..+....|. ...++...+||-++ .||+-.-. ..| .....+||-+... +. .+......
T Consensus 146 nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyvPe--~kG-aPa~vri~~~~~~-~~-~~~~a~ks 214 (566)
T KOG2315|consen 146 NEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYVPE--KKG-APASVRIYKYPEE-GQ-HQPVANKS 214 (566)
T ss_pred ceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEccC--CCC-CCcEEEEeccccc-cc-cchhhhcc
Confidence 4566776652 233444443 22578889999866 44443321 111 0233556665522 22 22211111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.. -+.-..+.|.+-|..|++++..+ .|+..-.||....||.+
T Consensus 215 FF-kadkvqm~WN~~gt~LLvLastd-------------------------------------VDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 215 FF-KADKVQMKWNKLGTALLVLASTD-------------------------------------VDKTNASYYGEQTLYLL 256 (566)
T ss_pred cc-ccceeEEEeccCCceEEEEEEEe-------------------------------------ecCCCccccccceEEEE
Confidence 10 01123789999999877753210 12222345667889999
Q ss_pred cCCCC--eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 163 SLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~~g~--~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
+.+|+ ..+|...+-+.++.|||+|+..+++-.. .+..+-++|+.+..+..+-+.|
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf-----------MPAkvtifnlr~~~v~df~egp------------ 313 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGP------------ 313 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----------ccceEEEEcCCCCEeEeCCCCC------------
Confidence 99874 4467666667799999999988777432 2568889999988776665443
Q ss_pred ccCCC-CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEe
Q 007620 241 REGMR-SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 241 ~~~~~-~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~ 318 (595)
+ .+.|+|-|.. |++. .-+ +....+-+||+ . ..+.+.... ..-+-..|+|||..|+....
T Consensus 314 ----RN~~~fnp~g~i-i~lA-GFG--------NL~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 314 ----RNTAFFNPHGNI-ILLA-GFG--------NLPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ----ccceEECCCCCE-EEEe-ecC--------CCCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEec
Confidence 3 4778999873 3333 211 11233445565 2 223333322 22345889999998765431
Q ss_pred ----ecccceEEEEEe
Q 007620 319 ----YKTSQTRTWLVC 330 (595)
Q Consensus 319 ----~~~~~~~L~~~d 330 (595)
..+....||.++
T Consensus 375 aPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYT 390 (566)
T ss_pred cccEEecCCeEEEEec
Confidence 112334677664
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0067 Score=55.85 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=121.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCC-CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+.+-|+|+. +++..++..+... ..+....|--||++++ +... ++...|| |+..-...++.....
T Consensus 61 qhvRlyD~~----S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-Tgse-------Dgt~kIW--dlR~~~~qR~~~~~s- 125 (311)
T KOG0315|consen 61 QHVRLYDLN----SNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSE-------DGTVKIW--DLRSLSCQRNYQHNS- 125 (311)
T ss_pred CeeEEEEcc----CCCCCceeEEeccCCceEEEEEeecCeEEE-ecCC-------CceEEEE--eccCcccchhccCCC-
Confidence 467788887 6666555544443 3677888999998864 4332 5667777 554444445543332
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+..+.-.|+...|+.. ....+|++.|
T Consensus 126 ----pVn~vvlhpnQteLis~-------------------------------------------------dqsg~irvWD 152 (311)
T KOG0315|consen 126 ----PVNTVVLHPNQTELISG-------------------------------------------------DQSGNIRVWD 152 (311)
T ss_pred ----CcceEEecCCcceEEee-------------------------------------------------cCCCcEEEEE
Confidence 45555666655444432 0235677788
Q ss_pred C-CC-CeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eE---EEeccCCCCccCCc
Q 007620 164 L-DG-TAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV---RELCDLPPAEDIPV 235 (595)
Q Consensus 164 ~-~g-~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~---~~l~~~~~~~~~~~ 235 (595)
+ +. -..+|.++. ....+...|||+.|+...+ + ...|+|++-++ .. ..+..++..+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-k------------G~cyvW~l~~~~~~s~l~P~~k~~ah~---- 215 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-K------------GNCYVWRLLNHQTASELEPVHKFQAHN---- 215 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-C------------ccEEEEEccCCCccccceEhhheeccc----
Confidence 8 33 344554432 5568999999999887753 2 36889987642 21 2222221110
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (595)
.....-.+|||++. |+-. .....+++++.+.+- .....|.........-.||.||..|+.
T Consensus 216 ------~~il~C~lSPd~k~-lat~------------ssdktv~iwn~~~~~-kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 216 ------GHILRCLLSPDVKY-LATC------------SSDKTVKIWNTDDFF-KLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred ------ceEEEEEECCCCcE-EEee------------cCCceEEEEecCCce-eeEEEeecCCceEEeeeeccCccEEEe
Confidence 01123567999983 3322 122345555541110 112234444445667889999998887
Q ss_pred EEeecccceEEEEE
Q 007620 316 ETWYKTSQTRTWLV 329 (595)
Q Consensus 316 ~~~~~~~~~~L~~~ 329 (595)
.+. +...+||-+
T Consensus 276 ass--d~~~rlW~~ 287 (311)
T KOG0315|consen 276 ASS--DHTARLWDL 287 (311)
T ss_pred cCC--CCceeeccc
Confidence 642 244567644
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.053 Score=50.96 Aligned_cols=200 Identities=15% Similarity=0.135 Sum_probs=113.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCc-eEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
.+...+..+.+..+.+.+.++ ...-+|-+.- +.|. .++++.... .++...-++||...+-...
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD-------k~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~sw- 83 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD-------KTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSASW- 83 (315)
T ss_pred eEEEEEeecCCCceEEEcccc-------eEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEeccc-
Confidence 355667777777777777662 2333333322 2344 345544333 4678888999985333211
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-c-CCCCeeeeeEECC
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F-GTPAVYTAVEPSP 184 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-l-t~~~~~~~~~~Sp 184 (595)
| ..+.+.|+ .|+.++ + .....+..+++||
T Consensus 84 ---------------------------------------D---------~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 84 ---------------------------------------D---------GTLRLWDLATGESTRRFVGHTKDVLSVAFST 115 (315)
T ss_pred ---------------------------------------c---------ceEEEEEecCCcEEEEEEecCCceEEEEecC
Confidence 1 23455677 555443 3 2334566899999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
|.++|+-.+.+ ..|-+||+.|+....+.+.... .=+.-+.|+|.... .+++.+
T Consensus 116 dn~qivSGSrD-------------kTiklwnt~g~ck~t~~~~~~~-----------~WVscvrfsP~~~~-p~Ivs~-- 168 (315)
T KOG0279|consen 116 DNRQIVSGSRD-------------KTIKLWNTLGVCKYTIHEDSHR-----------EWVSCVRFSPNESN-PIIVSA-- 168 (315)
T ss_pred CCceeecCCCc-------------ceeeeeeecccEEEEEecCCCc-----------CcEEEEEEcCCCCC-cEEEEc--
Confidence 99998755432 3688899988877776543100 00124678887532 333322
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.....+.+||+ .+-+.+. +....+......+||||...++. .+++ .+++.|++.+
T Consensus 169 --------s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasG--gkdg--~~~LwdL~~~ 224 (315)
T KOG0279|consen 169 --------SWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASG--GKDG--EAMLWDLNEG 224 (315)
T ss_pred --------cCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecC--CCCc--eEEEEEccCC
Confidence 12235666776 3222222 33445556788999999977663 3344 5666777763
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0032 Score=69.01 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=52.6
Q ss_pred eeEEEecCCCCCCCCceee-ecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEV-HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l-t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~ 82 (595)
+|.|.|-. ++..+.| + .....+..|.|||||++|||+..... -.+...||+.++.+.. +..|- -+
T Consensus 330 ~L~~~D~d----G~n~~~ve~--~~~~~i~sP~~SPDG~~vAY~ts~e~----~~g~s~vYv~~L~t~~~~~vkl~--ve 397 (912)
T TIGR02171 330 NLAYIDYT----KGASRAVEI--EDTISVYHPDISPDGKKVAFCTGIEG----LPGKSSVYVRNLNASGSGLVKLP--VE 397 (912)
T ss_pred eEEEEecC----CCCceEEEe--cCCCceecCcCCCCCCEEEEEEeecC----CCCCceEEEEehhccCCCceEee--cc
Confidence 78888886 6677777 4 33446889999999999999444310 0147889999998643 33331 11
Q ss_pred ccccccccceEEe--cCCc-EEEEE
Q 007620 83 ICLNAVFGSFVWV--NNST-LLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Ws--pdg~-~l~~~ 104 (595)
...=++|- .+|. .|+|+
T Consensus 398 -----~aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 -----NAAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred -----cccccceEecCCCCeEEEEE
Confidence 12345665 6665 55665
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00013 Score=67.98 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=43.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.=.++|++.+|.+|.|||++|..- +.++|+||+.|+ | +|-.+ .++.+-.||+.||+||.
T Consensus 55 e~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhG--Y----------~g~~g----~~~~~l~wa~~Gyavf~ 114 (321)
T COG3458 55 EVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHG--Y----------GGRGG----EWHDMLHWAVAGYAVFV 114 (321)
T ss_pred EEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEee--c----------cCCCC----CccccccccccceeEEE
Confidence 5666899999999999999999863 246799998763 1 11001 12334588999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.029 Score=52.19 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=41.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+..|+|-..-+.+++.. ...+-++|...++..+.+.... +--...|+|+|+.+++.
T Consensus 66 svdql~w~~~~~d~~atas~---------dk~ir~wd~r~~k~~~~i~~~~-----eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASG---------DKTIRIWDIRSGKCTARIETKG-----ENINITWSPDGEYIAVG 124 (313)
T ss_pred chhhheeCCCCCcceEEecC---------CceEEEEEeccCcEEEEeeccC-----cceEEEEcCCCCEEEEe
Confidence 56788999976666666542 3456666888888766655443 23468999999999886
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.11 Score=56.02 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=23.4
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
..+..++|+|||+.|+.+... ..+.+||+.+++
T Consensus 168 ~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQE 200 (568)
T ss_pred CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCc
Confidence 345689999999988766422 368888887553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0038 Score=68.57 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=57.0
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCceeecCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (595)
..+.++.||||+.+++-.+.+ ..+.+||..+- ..+.+.... .-+....|-|-|
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H~-------------s~VKGvs~DP~G 183 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGHQ-------------SLVKGVSWDPIG 183 (942)
T ss_pred CccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeeccc-------------ccccceEECCcc
Confidence 345689999999998877653 36889997654 333332221 113468898988
Q ss_pred CeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc------CccccceeecCCCcEEEEE
Q 007620 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~------~~~~~~~~wspDg~~l~~~ 316 (595)
+ |+..+. . ...+.+|+. .+=+-.+.++.. ...+..+.|||||..|+..
T Consensus 184 k----y~ASqs-d--------Drtikvwrt--~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 184 K----YFASQS-D--------DRTLKVWRT--SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred C----eeeeec-C--------CceEEEEEc--ccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 8 332221 1 123334442 111122333321 1235689999999987643
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.071 Score=51.91 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=119.9
Q ss_pred ccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
...+..+| ++..+||.+ | ....++++|..+|+..+....+.+. .-++--.||+||++|+-+-.+ .
T Consensus 7 gH~~a~~p~~~~avafaR-R--------PG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd-~-- 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFAR-R--------PGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND-Y-- 72 (305)
T ss_pred ccceeeCCCCCeEEEEEe-C--------CCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-c--
Confidence 67889999 555555554 3 3578999999999866544333211 012356899999988775211 0
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeec---CCCC-eeeeeEECCCCC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTPA-VYTAVEPSPDQK 187 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~l---t~~~-~~~~~~~SpDg~ 187 (595)
+. ....|-++|.....+++ ...+ --..+.+.|||+
T Consensus 73 ----------------~~-------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~ 111 (305)
T PF07433_consen 73 ----------------ET-------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE 111 (305)
T ss_pred ----------------CC-------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC
Confidence 00 13456666665333333 2222 224788999999
Q ss_pred eEEEEEccc---Ccc--ccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 188 YVLITSMHR---PYS--YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 188 ~l~~~~~~~---~~~--~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
.|++..-.. |.. ..++.......|..+|..+|+...-..+|-.. .+...|-+.+.+||. +++. .
T Consensus 112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~--------~~lSiRHLa~~~~G~--V~~a-~ 180 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL--------HQLSIRHLAVDGDGT--VAFA-M 180 (305)
T ss_pred EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc--------cccceeeEEecCCCc--EEEE-E
Confidence 998874321 211 12222233446777887766543322222100 012245688888876 4332 3
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceecc-------ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
+..++... ..-.+.+++ .++..+.+. ...+...+++++++|..++..+- .-..+.++|.+++
T Consensus 181 Q~qg~~~~---~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP---rGg~~~~~d~~tg 249 (305)
T PF07433_consen 181 QYQGDPGD---APPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP---RGGRVAVWDAATG 249 (305)
T ss_pred ecCCCCCc---cCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC---CCCEEEEEECCCC
Confidence 43333221 111233333 222222222 22345678899999887655532 1225666787773
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.1 Score=55.62 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=67.3
Q ss_pred EEEEcC-CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCC
Q 007620 159 LVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIP 234 (595)
Q Consensus 159 l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~ 234 (595)
|.++|+ +++. ..+. ....+..++|+|||+.|+....+ ..|.+||+.+++ ...+.....
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~----- 211 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHAS----- 211 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCC-----
Confidence 444555 3432 2332 23346689999999988766532 368899987554 333322110
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCccccceeecCCCcE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLA 312 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~~~~~~~wspDg~~ 312 (595)
.......|.+++.. ++...+.. .....+.+||+ -....+..+.. .......+.|++|+..
T Consensus 212 -------~~~~~~~w~~~~~~-ivt~G~s~--------s~Dr~VklWDl--r~~~~p~~~~~~d~~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 212 -------AKSQRCLWAKRKDL-IITLGCSK--------SQQRQIMLWDT--RKMASPYSTVDLDQSSALFIPFFDEDTNL 273 (493)
T ss_pred -------CcceEEEEcCCCCe-EEEEecCC--------CCCCeEEEEeC--CCCCCceeEeccCCCCceEEEEEcCCCCE
Confidence 00113567777653 32221100 11235667775 11112222221 1122345678999887
Q ss_pred EEEEEeecccceEEEEEeCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~ 333 (595)
++.... .++ .|.++|+..
T Consensus 274 L~lggk-gDg--~Iriwdl~~ 291 (493)
T PTZ00421 274 LYIGSK-GEG--NIRCFELMN 291 (493)
T ss_pred EEEEEe-CCC--eEEEEEeeC
Confidence 655421 123 466667665
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.28 Score=52.45 Aligned_cols=193 Identities=10% Similarity=0.134 Sum_probs=99.2
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...+++||||+.|+....+ .++-+||...+-. -..++.. .++..+.|+..|+.
T Consensus 353 i~~l~YSpDgq~iaTG~eD-------------gKVKvWn~~SgfC~vTFteHt-------------s~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAED-------------GKVKVWNTQSGFCFVTFTEHT-------------SGVTAVQFTARGNV 406 (893)
T ss_pred eeeEEECCCCcEEEeccCC-------------CcEEEEeccCceEEEEeccCC-------------CceEEEEEEecCCE
Confidence 4578999999998866532 3788899876643 2233221 22345777777763
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.+-...|+ .+..||+ .....-+.++. .+-++..++.-|-|..++... .....|+++++.++
T Consensus 407 --llssSLDG-----------tVRAwDl--kRYrNfRTft~P~p~QfscvavD~sGelV~AG~---~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 407 --LLSSSLDG-----------TVRAWDL--KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA---QDSFEIFVWSVQTG 468 (893)
T ss_pred --EEEeecCC-----------eEEeeee--cccceeeeecCCCceeeeEEEEcCCCCEEEeec---cceEEEEEEEeecC
Confidence 22222332 2333343 01101111221 122344455555576544432 23458999999885
Q ss_pred CCCcEEEe---ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeee
Q 007620 335 DVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (595)
Q Consensus 335 ~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (595)
+...++ +..+.. ++++++|..|+-.+-+ ...++|-+ ++ ..++.+.|-
T Consensus 469 --qllDiLsGHEgPVs~---------l~f~~~~~~LaS~SWD---kTVRiW~i---------------f~-s~~~vEtl~ 518 (893)
T KOG0291|consen 469 --QLLDILSGHEGPVSG---------LSFSPDGSLLASGSWD---KTVRIWDI---------------FS-SSGTVETLE 518 (893)
T ss_pred --eeeehhcCCCCccee---------eEEccccCeEEecccc---ceEEEEEe---------------ec-cCceeeeEe
Confidence 322222 222322 6789999977655433 24445411 12 133444331
Q ss_pred ecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
.. ..++ ..+|.|||+.+++...+ ++|-.+|..
T Consensus 519 i~---------sdvl----~vsfrPdG~elaVaTld----gqItf~d~~ 550 (893)
T KOG0291|consen 519 IR---------SDVL----AVSFRPDGKELAVATLD----GQITFFDIK 550 (893)
T ss_pred ec---------ccee----EEEEcCCCCeEEEEEec----ceEEEEEhh
Confidence 11 1111 25789999988876543 456666644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.08 Score=50.64 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=62.8
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...+.||||||+|++++.. ..++++|.- |.....+...+..... .....++||++.
T Consensus 190 w~~l~FS~dGK~iLlsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~----------~~~a~ftPds~F 246 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNL----------PLSATFTPDSKF 246 (311)
T ss_pred eeeeEEcCCCCEEEEEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCc----------ceeEEECCCCcE
Confidence 4589999999999999753 357888855 4433444444322211 124678899984
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc--CccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
| +.. .....+.+|++ .+ |........ .+....+.|.|.-..++... .+..+|..+.
T Consensus 247 -v--l~g----------s~dg~i~vw~~--~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~~ 304 (311)
T KOG1446|consen 247 -V--LSG----------SDDGTIHVWNL--ET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPDE 304 (311)
T ss_pred -E--EEe----------cCCCcEEEEEc--CC-CcEeeEecCCCCCCccccccCCceeeeeecC----ceEEEEeccc
Confidence 1 111 12235677776 23 344333322 34456677888665555432 3345666554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.09 Score=49.81 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=45.3
Q ss_pred ceEEeccCCCCCCCCceeccccCccccceeecC-CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCC
Q 007620 276 DIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (595)
Q Consensus 276 ~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 354 (595)
....+||+ .+|.....+....+.+..+..+| +++.++...- +....|| |+..+ .-+..+.....++
T Consensus 166 ~TCalWDi--e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c--D~~aklW--D~R~~--~c~qtF~ghesDI----- 232 (343)
T KOG0286|consen 166 MTCALWDI--ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC--DKSAKLW--DVRSG--QCVQTFEGHESDI----- 232 (343)
T ss_pred ceEEEEEc--ccceEEEEecCCcccEEEEecCCCCCCeEEeccc--ccceeee--eccCc--ceeEeeccccccc-----
Confidence 45677787 23323334555667788889999 8888776532 2333555 55542 2243442222211
Q ss_pred CCCeeeCCCCCEEEEEe
Q 007620 355 SPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 355 ~~~~~~~~dg~~l~~~~ 371 (595)
..+.+-|+|..++..+
T Consensus 233 -Nsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 233 -NSVRFFPSGDAFATGS 248 (343)
T ss_pred -ceEEEccCCCeeeecC
Confidence 1277888887655443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.033 Score=52.68 Aligned_cols=214 Identities=15% Similarity=0.209 Sum_probs=120.1
Q ss_pred EEEecCCCCCCC---CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 8 GIHRLLPDDSLG---PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 8 ~~~~~~~~~~~g---~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
-|++|+..+..| ..+.|.++. .+.+.-+|-+|+..| -.+. +....|| |+++|+..+.+....+
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHt--gylScC~f~dD~~il-T~SG--------D~TCalW--Die~g~~~~~f~GH~g- 187 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHT--GYLSCCRFLDDNHIL-TGSG--------DMTCALW--DIETGQQTQVFHGHTG- 187 (343)
T ss_pred EEEecccccccccceeeeeecCcc--ceeEEEEEcCCCceE-ecCC--------CceEEEE--EcccceEEEEecCCcc-
Confidence 467777544454 334555332 368888999888643 2221 3445555 9999987777654332
Q ss_pred ccccccceEEec-CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 85 LNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 85 ~~~~~~~~~Wsp-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+-++..+| +++.++-..-+ ..-+++|
T Consensus 188 ---DV~slsl~p~~~ntFvSg~cD-------------------------------------------------~~aklWD 215 (343)
T KOG0286|consen 188 ---DVMSLSLSPSDGNTFVSGGCD-------------------------------------------------KSAKLWD 215 (343)
T ss_pred ---cEEEEecCCCCCCeEEecccc-------------------------------------------------cceeeee
Confidence 456788888 67654332100 0112234
Q ss_pred C-CCCeee-cC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 164 L-DGTAKD-FG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 164 ~-~g~~~~-lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
+ +|..+| .. ....+..+.|-|+|..++-.+.+ ...-+||+.....-.+.+.+..
T Consensus 216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~~---------- 272 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDSI---------- 272 (343)
T ss_pred ccCcceeEeecccccccceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCcc----------
Confidence 4 443333 21 22345688999999877655432 2344667665443333332211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
..+..+..+|..|+ |.+.-+.| -.+.+||. .++...-.|...+.+++.+..+|||.+++..+|..
T Consensus 273 ~~gitSv~FS~SGR--lLfagy~d-----------~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 273 ICGITSVAFSKSGR--LLFAGYDD-----------FTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred cCCceeEEEccccc--EEEeeecC-----------CceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 01234567777776 44442211 24566675 45423335667788999999999999999887742
Q ss_pred ccceEEE
Q 007620 321 TSQTRTW 327 (595)
Q Consensus 321 ~~~~~L~ 327 (595)
..+||
T Consensus 338 --~lriW 342 (343)
T KOG0286|consen 338 --TLRIW 342 (343)
T ss_pred --heeec
Confidence 23554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.017 Score=58.60 Aligned_cols=255 Identities=14% Similarity=0.143 Sum_probs=124.7
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-----EecccCCCccccccccceEE
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVW 94 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~W 94 (595)
-+.++.+ +...++...+.|.|.+++--+ ....+..+|+.+... ++|-... +..+.+++|
T Consensus 159 hEi~l~h--gtk~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E----~h~i~sl~y 222 (641)
T KOG0772|consen 159 HEIQLKH--GTKIVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCE----THQINSLQY 222 (641)
T ss_pred ceEeccC--CceEEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCccc----ccccceeee
Confidence 3445543 222578889999998864322 235566668876432 3332111 123568999
Q ss_pred ecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC---CCeeec
Q 007620 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---GTAKDF 171 (595)
Q Consensus 95 spdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~l 171 (595)
|+.|..|+++.-.. +.+++. .|+-.+........|+.|+. |-.-.
T Consensus 223 s~Tg~~iLvvsg~a-------------------------qakl~D------RdG~~~~e~~KGDQYI~Dm~nTKGHia~- 270 (641)
T KOG0772|consen 223 SVTGDQILVVSGSA-------------------------QAKLLD------RDGFEIVEFSKGDQYIRDMYNTKGHIAE- 270 (641)
T ss_pred cCCCCeEEEEecCc-------------------------ceeEEc------cCCceeeeeeccchhhhhhhccCCceee-
Confidence 99999887763211 001110 11111111134556666662 22333
Q ss_pred CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEe-ccCCCCccCCccccccccCCCCcee
Q 007620 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVREL-CDLPPAEDIPVCYNSVREGMRSISW 249 (595)
Q Consensus 172 t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~w 249 (595)
.+..+|.|+.+..+.+.... ..+-+||++ .++.+++ ...+ -.+.+..+..-.|
T Consensus 271 -----lt~g~whP~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~k~--------~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 271 -----LTCGCWHPDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKTKP--------AGGKRVPVTSCAW 325 (641)
T ss_pred -----eeccccccCcccceEEecCC------------CcEEEEecCCchhheeEEeecc--------CCCcccCceeeec
Confidence 34568999999888776543 256677765 3333332 2111 0111111234679
Q ss_pred ecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc----ccCccccceeecCCCcEEEEEEeecccceE
Q 007620 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (595)
Q Consensus 250 spdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (595)
++||+. |+ ....|+. |-.|+. +--.-.+.... .....++++.||+||+.|+.... +. .
T Consensus 326 nrdg~~-iA-agc~DGS-----------IQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~--D~--t 387 (641)
T KOG0772|consen 326 NRDGKL-IA-AGCLDGS-----------IQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF--DD--T 387 (641)
T ss_pred CCCcch-hh-hcccCCc-----------eeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccC--CC--c
Confidence 999983 22 1223332 222231 00000111111 11235789999999998876532 23 4
Q ss_pred EEEEeCCCCCCCcEEEee-cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 326 TWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 326 L~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
|-++||.-. + +.|.. ...-..+ |+. ...+|||.+.|+...
T Consensus 388 LKvWDLrq~--k-kpL~~~tgL~t~~--~~t-dc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 388 LKVWDLRQF--K-KPLNVRTGLPTPF--PGT-DCCFSPDDKLILTGT 428 (641)
T ss_pred eeeeecccc--c-cchhhhcCCCccC--CCC-ccccCCCceEEEecc
Confidence 555566542 1 33321 1111111 111 167899988776544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.021 Score=60.57 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=50.5
Q ss_pred eEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
|.|.|+.. .+. .+.+.++. ..+....|+|+|+.|+-.+. ++ .+.++++.+|+..+.......
T Consensus 227 iriwd~~~---~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~--------D~--tvriWd~~~~~~~~~l~~hs~-- 289 (456)
T KOG0266|consen 227 LRIWDLKD---DGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSD--------DG--TVRIWDVRTGECVRKLKGHSD-- 289 (456)
T ss_pred EEEeeccC---CCeEEEEecCCC--CceEEEEecCCCCEEEEecC--------CC--cEEEEeccCCeEEEeeeccCC--
Confidence 67778842 433 34555433 35889999999965555432 33 455558888876555433221
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.++.+.+++||..|+-.
T Consensus 290 --~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 290 --GISGLAFSPDGNLLVSA 306 (456)
T ss_pred --ceEEEEECCCCCEEEEc
Confidence 57788999999987764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.011 Score=63.84 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=50.4
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCC---
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD--- 82 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~--- 82 (595)
|-+.++.| .+.++-+.. ....+....++|.|+.||.++- ..+|.++++..+. ...++....
T Consensus 120 vK~~~~~D---~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~----------dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 120 VKLLNLDD---SSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSC----------DGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred EEEEeccc---cchheeecc--cCCceeeeeEcCCCCEEEEEec----------CceEEEEEcccchhhhhcccCCcccc
Confidence 33456663 444444443 3336889999999999988763 3566677887775 334433221
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.........++|+|+|..+++.
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ccccceeeeeeecCCCCeEEee
Confidence 1112234578999997766664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.3 Score=48.25 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=99.3
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCC-ceeecCCCeeE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS-ISWRADKPSTL 257 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~wspdg~~~l 257 (595)
.+.+|.|||++++.. -.| ...+-++|++.++.-.-.+.| -|......+.+. .....||+ +
T Consensus 99 ~~~ls~dgk~~~V~N-~TP----------a~SVtVVDl~~~kvv~ei~~P------GC~~iyP~~~~~F~~lC~DGs--l 159 (342)
T PF06433_consen 99 MFALSADGKFLYVQN-FTP----------ATSVTVVDLAAKKVVGEIDTP------GCWLIYPSGNRGFSMLCGDGS--L 159 (342)
T ss_dssp GEEE-TTSSEEEEEE-ESS----------SEEEEEEETTTTEEEEEEEGT------SEEEEEEEETTEEEEEETTSC--E
T ss_pred ceEEccCCcEEEEEc-cCC----------CCeEEEEECCCCceeeeecCC------CEEEEEecCCCceEEEecCCc--e
Confidence 678999999998774 344 458999999977654432222 111000011111 22344443 2
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCcee----ccc--cCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI----LHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~----l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
..+ .+|. +| +... ++. .+.-+..+.++.++..+++-+. ...+|.+|+
T Consensus 160 ~~v-------------------~Ld~---~G-k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dl 212 (342)
T PF06433_consen 160 LTV-------------------TLDA---DG-KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADL 212 (342)
T ss_dssp EEE-------------------EETS---TS-SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEE
T ss_pred EEE-------------------EECC---CC-CEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEec
Confidence 222 2232 32 3321 111 1122345566666655665431 237999999
Q ss_pred CCCCCCcEEEeeccc-----ccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC
Q 007620 332 GSKDVAPRVLFDRVF-----ENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (595)
Q Consensus 332 ~~~~~~~~~l~~~~~-----~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (595)
.+. .++..-..+. ...-..||+ ..+.+.+..+.||+..+... . | +-+..-..+..+|++++
T Consensus 213 sg~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~-~---------g-sHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 213 SGD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG-E---------G-SHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp TTS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---T---------T--TTS-EEEEEEEETTTT
T ss_pred cCC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC-C---------C-CccCCceEEEEEECCCC
Confidence 873 4444321111 000112444 34666666666776553211 1 1 12222334557899888
Q ss_pred ceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceee
Q 007620 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (595)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~ 466 (595)
+...-+... .... ...+|-|.+-+++..+. .-..|+++|..+|+..+
T Consensus 280 krv~Ri~l~------~~~~------Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 280 KRVARIPLE------HPID------SIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEE------EEES------EEEEESSSS-EEEEEET--TTTEEEEEETTT--EEE
T ss_pred eEEEEEeCC------Cccc------eEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEe
Confidence 754433221 1110 02344466656665433 23679999998887644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.078 Score=53.38 Aligned_cols=112 Identities=10% Similarity=0.227 Sum_probs=64.4
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
-+..+.|+.+|.+|+-...+ ..+.+||..+|..++...+-.. ..-+..|..+..
T Consensus 278 PI~slKWnk~G~yilS~~vD-------------~ttilwd~~~g~~~q~f~~~s~------------~~lDVdW~~~~~- 331 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVD-------------GTTILWDAHTGTVKQQFEFHSA------------PALDVDWQSNDE- 331 (524)
T ss_pred ceEEEEEcCCCCEEEeccCC-------------ccEEEEeccCceEEEeeeeccC------------CccceEEecCce-
Confidence 45689999999999877643 3678999888877665433211 012355643322
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCC-CceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
|+.. ....-+++..+ .+. ....+....+.+..+.|.|.|..|+..+ +++..+||.+.-
T Consensus 332 ---F~ts----------~td~~i~V~kv---~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S--dD~TlkiWs~~~ 390 (524)
T KOG0273|consen 332 ---FATS----------STDGCIHVCKV---GEDRPVKTFIGHHGEVNALKWNPTGSLLASCS--DDGTLKIWSMGQ 390 (524)
T ss_pred ---Eeec----------CCCceEEEEEe---cCCCcceeeecccCceEEEEECCCCceEEEec--CCCeeEeeecCC
Confidence 2210 01112333232 111 3334555667788899999998777654 235557777543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.041 Score=55.91 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc---c-----ccccceE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL---N-----AVFGSFV 93 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~---~-----~~~~~~~ 93 (595)
++|. -.+...+...+|||.|..|+.++. ..|.-++|.+|-+.........-.. + +.+..-.
T Consensus 207 r~l~-P~E~h~i~sl~ys~Tg~~iLvvsg----------~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~ 275 (641)
T KOG0772|consen 207 RQLQ-PCETHQINSLQYSVTGDQILVVSG----------SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC 275 (641)
T ss_pred hccC-cccccccceeeecCCCCeEEEEec----------CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence 4554 223336889999999999998863 4677788887665444432211000 0 1233557
Q ss_pred EecCCcEEEEE
Q 007620 94 WVNNSTLLIFT 104 (595)
Q Consensus 94 Wspdg~~l~~~ 104 (595)
|.|+.+..+.+
T Consensus 276 whP~~k~~FlT 286 (641)
T KOG0772|consen 276 WHPDNKEEFLT 286 (641)
T ss_pred cccCcccceEE
Confidence 99988877665
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.32 Score=55.66 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccceEEccC-CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEec-CCcEEEEE
Q 007620 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-dg~~l~~~ 104 (595)
.+....|+|. +++||-.. . ...|.++|+.+++......... ..+..+.|+| ++..|+..
T Consensus 534 ~v~~l~~~~~~~~~las~~-~---------Dg~v~lWd~~~~~~~~~~~~H~----~~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN-F---------EGVVQVWDVARSQLVTEMKEHE----KRVWSIDYSSADPTLLASG 594 (793)
T ss_pred ceeeEEeccCCCCEEEEEe-C---------CCeEEEEECCCCeEEEEecCCC----CCEEEEEEcCCCCCEEEEE
Confidence 4677899885 55555433 1 3456677888776433322111 1466899996 67766554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.26 Score=47.21 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=117.4
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
..+....||+||+.|+-.+. ...|.++|...|+.......+. .++....+......++......
T Consensus 15 ~~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk~-- 78 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTKE-- 78 (311)
T ss_pred CceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCCC--
Confidence 36889999999999877543 2356666888777554444332 1455667776655555532110
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCeeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~~~~~~~SpDg~ 187 (595)
| ..|-.+++ +.+ +|-.. ....+..++.||-+.
T Consensus 79 ------------------------------------d---------~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 79 ------------------------------------D---------DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred ------------------------------------C---------CceEEEEeecCceEEEcCCCCceEEEEEecCCCC
Confidence 0 11222233 222 22111 123456889999886
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
..+-.+.+ ..|.+||+...+..-+-... +..-.++.|+|- +++...+
T Consensus 114 ~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~GL---ifA~~~~--- 160 (311)
T KOG1446|consen 114 TFLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEGL---IFALANG--- 160 (311)
T ss_pred eEEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCCc---EEEEecC---
Confidence 55444432 36888998865544432221 011246677763 3432221
Q ss_pred cccccCCcceEEeccCCCCCCCCcee---cccc-CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPEI---LHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~~---l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
...|.++|+--++. .+.. +... ..+...+.|||||+.++... ...-++++|.=.| ....-+.
T Consensus 161 -------~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G--~~~~tfs 226 (311)
T KOG1446|consen 161 -------SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG--TVKSTFS 226 (311)
T ss_pred -------CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC--cEeeeEe
Confidence 11333333301222 3322 2211 23466789999999755543 2236778886553 3222221
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..... -..|+ ...++|||+.++..+
T Consensus 227 ~~~~~-~~~~~--~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 227 GYPNA-GNLPL--SATFTPDSKFVLSGS 251 (311)
T ss_pred eccCC-CCcce--eEEECCCCcEEEEec
Confidence 11100 00111 267889999887665
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.14 Score=57.18 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=64.6
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce--EEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+.|||||++|+|....... -..+|++.|+.++. ...+... ...+.|++|++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~--------E~~~l~v~d~~tg~~l~~~i~~~----------------~~~~~w~~D~~~ 185 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSR--------RQYGIRFRNLETGNWYPELLDNV----------------EPSFVWANDSWT 185 (686)
T ss_pred eEEEECCCCCEEEEEecCCCc--------EEEEEEEEECCCCCCCCccccCc----------------ceEEEEeeCCCE
Confidence 478999999999999754321 13579999998774 1222110 124899999984
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCC--Cceecccc-Cccccceee-cCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKL-DLRFRSVSW-CDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~--~~~~l~~~-~~~~~~~~w-spDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
+++... +.... ....+|++++ ..+ +.+.+... +.......| +.|++.++...... ....+++++.
T Consensus 186 -~~y~~~-~~~~~-----~~~~v~~h~l---gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-~~~~~~l~~~ 254 (686)
T PRK10115 186 -FYYVRK-HPVTL-----LPYQVWRHTI---GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-TTSEVLLLDA 254 (686)
T ss_pred -EEEEEe-cCCCC-----CCCEEEEEEC---CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-ccccEEEEEC
Confidence 666533 21101 1246777776 222 22334432 222222334 44787655443222 2235666664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.031 Score=60.62 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+++-+|+++|+-+. ...|-++++........+...+ +.+..+.+.|.+..|+..
T Consensus 99 ~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~----apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHD----APVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccC----CceeeeeEcCCCCEEEEE
Confidence 667899999999999763 3667778877665444433222 257789999999998886
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=65.63 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCEEEEEEecCCCcceEEEEeCCCCcee-----eEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCC
Q 007620 438 QLKILTSKESKTEITQYHILSWPLKKSS-----QITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (595)
Q Consensus 438 ~~~l~~~~~s~~~p~~l~~~d~~~~~~~-----~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~ 512 (595)
...+.|..+|.-.|+.+|.+|+..+++. .++. +.++.+......+.+.+++.||.+|+-.+++=...+. ..+
T Consensus 393 ~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~-~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~--dg~ 469 (712)
T KOG2237|consen 393 SSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITV-VLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKL--DGS 469 (712)
T ss_pred CceEEEEEeccCCCCeEEEeeccCCCCCCcceeeecc-ccCcccccceEEEEEEEecCCCCccceEEEEechhhh--cCC
Confidence 3678899999999999999999887432 2333 2355555545899999999999999999998443332 235
Q ss_pred CcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeecCCCCCCch
Q 007620 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR 577 (595)
Q Consensus 513 lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~ 577 (595)
.|+++|+|++ | + +.=.|. |. .+--.|..+|++... +++| ||.+++-.
T Consensus 470 ~P~LLygYGa-y------~-isl~p~-f~----~srl~lld~G~Vla~----a~VR-GGGe~G~~ 516 (712)
T KOG2237|consen 470 KPLLLYGYGA-Y------G-ISLDPS-FR----ASRLSLLDRGWVLAY----ANVR-GGGEYGEQ 516 (712)
T ss_pred CceEEEEecc-c------c-eeeccc-cc----cceeEEEecceEEEE----Eeec-cCcccccc
Confidence 5999999854 1 1 111121 21 122467779988776 5666 45556543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=60.89 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=77.8
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.++.++|||+....+-.+. + ..|-+||.. ..+.++|... . -.++...|.|...
T Consensus 182 aIRdlafSpnDskF~t~Sd-D------------g~ikiWdf~~~kee~vL~GH-g------------wdVksvdWHP~kg 235 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSD-D------------GTIKIWDFRMPKEERVLRGH-G------------WDVKSVDWHPTKG 235 (464)
T ss_pred hhheeccCCCCceeEEecC-C------------CeEEEEeccCCchhheeccC-C------------CCcceeccCCccc
Confidence 4567899996544333322 1 367788854 5555555321 1 1245788998865
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
|... + + ....+-+|| |.+|...-.|......+..+.|++++..|+..+. + ..+-++|+.+.
T Consensus 236 --Lias-g--s--------kDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--D--~~~kv~DiR~m 296 (464)
T KOG0284|consen 236 --LIAS-G--S--------KDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--D--QSCKVFDIRTM 296 (464)
T ss_pred --eeEE-c--c--------CCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--C--ceEEEEehhHh
Confidence 3222 1 1 112455667 4554344445555666788999999988776542 1 25667787642
Q ss_pred CCCcEEE--eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 335 DVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 335 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++.... ...++.. +.|.|--..|+.+.
T Consensus 297 -kEl~~~r~Hkkdv~~---------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 297 -KELFTYRGHKKDVTS---------LTWHPLNESLFTSG 325 (464)
T ss_pred -HHHHHhhcchhhhee---------eccccccccceeec
Confidence 222211 1223333 67887666665543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.019 Score=58.81 Aligned_cols=146 Identities=10% Similarity=0.197 Sum_probs=92.4
Q ss_pred cceEEccCCCEEEEEEecc--cccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 34 NFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....|.+-|+-|..++..+ +....+-+.+.||++++. |+...+--..++ .+.++.|+|+|+-+++..
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~G----PVhdv~W~~s~~EF~Vvy------ 289 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEG----PVHDVTWSPSGREFAVVY------ 289 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCC----CceEEEECCCCCEEEEEE------
Confidence 3567999999988887763 111123456889999997 554444222232 577999999999776641
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEEE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~~ 191 (595)
| ++.+.+-++|+.|.+.--..++-...+-|||-|+.|++
T Consensus 290 ------------------G-----------------------fMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 290 ------------------G-----------------------FMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILL 328 (566)
T ss_pred ------------------e-----------------------cccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEE
Confidence 1 02345556777776553333332345779999999998
Q ss_pred EEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..-.. ...++-+||+.. .+.|..... .+..-+.|+|||..
T Consensus 329 AGFGN----------L~G~mEvwDv~n--~K~i~~~~a------------~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 329 AGFGN----------LPGDMEVWDVPN--RKLIAKFKA------------ANTTVFEWSPDGEY 368 (566)
T ss_pred eecCC----------CCCceEEEeccc--hhhcccccc------------CCceEEEEcCCCcE
Confidence 86322 256899999876 334433221 11234899999985
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.063 Score=51.74 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred ccceEEc-cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCCCC
Q 007620 33 INFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 33 ~~~~~~S-PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.....+. +|| .|++... ..+.++|+++++.+.+....... .......+...|+|+ |+|+......
T Consensus 42 ~~G~~~~~~~g-~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~ 108 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGG 108 (246)
T ss_dssp EEEEEEECTTS-EEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBC
T ss_pred CceEEEEccCC-EEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCc
Confidence 4445556 665 4544431 33455599999877776542110 111345788999999 6775321100
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCC-CeeeeeEECCCCCeE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYV 189 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~-~~~~~~~~SpDg~~l 189 (595)
. ... ....||+++.+++.+.+... .....++|||||+.|
T Consensus 109 ~----------------------------------~~~------~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 109 A----------------------------------SGI------DPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp T----------------------------------TCG------GSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred c----------------------------------ccc------cccceEEECCCCeEEEEecCcccccceEECCcchhe
Confidence 0 000 01578888888766555332 233589999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCC
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
+++... ...|+.++++
T Consensus 149 yv~ds~------------~~~i~~~~~~ 164 (246)
T PF08450_consen 149 YVADSF------------NGRIWRFDLD 164 (246)
T ss_dssp EEEETT------------TTEEEEEEEE
T ss_pred eecccc------------cceeEEEecc
Confidence 887543 2368888874
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.99 Score=52.99 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=24.6
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
..++++|++..|+++... ...|+++|..++....+
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEE
Confidence 367899987777776432 24788999887766554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.025 Score=60.30 Aligned_cols=81 Identities=6% Similarity=-0.008 Sum_probs=49.3
Q ss_pred eEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (595)
.+.+||+ -+|...+.+......+..+.+||+|+.|+..+ +.+ .|.++|+.++. -...+.++ .+...+
T Consensus 558 tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--ed~--~I~iWDl~~~~-~v~~l~~H--t~ti~S---- 624 (707)
T KOG0263|consen 558 TVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGD--EDG--LIKIWDLANGS-LVKQLKGH--TGTIYS---- 624 (707)
T ss_pred eEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecc--cCC--cEEEEEcCCCc-chhhhhcc--cCceeE----
Confidence 4556676 35444444545566788999999999988764 234 56667887741 11222233 122222
Q ss_pred CeeeCCCCCEEEEEe
Q 007620 357 MMTRTSTGTNVIAKI 371 (595)
Q Consensus 357 ~~~~~~dg~~l~~~~ 371 (595)
++++.||..|+...
T Consensus 625 -lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 625 -LSFSRDGNVLASGG 638 (707)
T ss_pred -EEEecCCCEEEecC
Confidence 78899998776554
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=66.02 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=48.2
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCC----C---cccCCCCchhHHHh
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP----N---EFSGMTPTSSLIFL 552 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp----~---~~~~~~~~~~q~la 552 (595)
...|.+.|...++..+.++|+.|.+. +.|.|+||..|++ |.+...+.|-+ . .+..........||
T Consensus 86 Y~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgH----g~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LA 157 (390)
T PF12715_consen 86 YTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGH----GGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLA 157 (390)
T ss_dssp EEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--T----T--HHHHCT---SSGCG--STTSTTT-HHHHHH
T ss_pred eEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCC----CCCcccccCCcccccccchhhccccccHHHHHH
Confidence 37888999999999999999999885 3477999998864 22222233221 1 11111112245899
Q ss_pred ccCeEEEeCCCCceeecCC
Q 007620 553 ARRFAVLAGPSIPIIGEGD 571 (595)
Q Consensus 553 ~~GY~Vl~~~~~~~~~~~~ 571 (595)
.+||+||. +|.+-+|+++
T Consensus 158 k~GYVvla-~D~~g~GER~ 175 (390)
T PF12715_consen 158 KRGYVVLA-PDALGFGERG 175 (390)
T ss_dssp TTTSEEEE-E--TTSGGG-
T ss_pred hCCCEEEE-Eccccccccc
Confidence 99999999 9988888844
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.034 Score=53.82 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCCceeeecCCCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
++...++...... .....+.+||||+.+||+... ++...|++.... +....+.... .+..+.|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~-~~~~~~~~g~------~l~~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAG-GPVRPVLTGG------SLTRPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEEEc-------CCCCEEEEEcCC-CcceeeccCC------cccccccc
Confidence 5566666654332 157899999999999999832 456899998865 4444442111 46789999
Q ss_pred cCCcEEEEE
Q 007620 96 NNSTLLIFT 104 (595)
Q Consensus 96 pdg~~l~~~ 104 (595)
++|...++.
T Consensus 75 ~~g~~W~v~ 83 (253)
T PF10647_consen 75 PDGWVWTVD 83 (253)
T ss_pred CCCCEEEEE
Confidence 998765553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.018 Score=57.85 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=47.0
Q ss_pred eEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
|+|+++-+ .++- |...+ ....+...+||++|..+.-.+- + ..|-+.|+++|....-.....
T Consensus 239 vklW~vy~---~~~~lrtf~g--H~k~Vrd~~~s~~g~~fLS~sf--------D--~~lKlwDtETG~~~~~f~~~~--- 300 (503)
T KOG0282|consen 239 VKLWNVYD---DRRCLRTFKG--HRKPVRDASFNNCGTSFLSASF--------D--RFLKLWDTETGQVLSRFHLDK--- 300 (503)
T ss_pred EEEEEEec---Ccceehhhhc--chhhhhhhhccccCCeeeeeec--------c--eeeeeeccccceEEEEEecCC---
Confidence 67777763 2322 22322 2235889999999998544432 2 345555999998554433322
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.||+..+++.
T Consensus 301 --~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 301 --VPTCVKFHPDNQNIFLV 317 (503)
T ss_pred --CceeeecCCCCCcEEEE
Confidence 34567788998666664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.18 Score=52.50 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=42.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+-..||..+ .||... ...+|+.+..+|+...|....+ ..+.++.|+++|+.|+..
T Consensus 179 Y~nlldWss~n-~laVal-----------g~~vylW~~~s~~v~~l~~~~~----~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 179 YLNLLDWSSAN-VLAVAL-----------GQSVYLWSASSGSVTELCSFGE----ELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hhhHhhcccCC-eEEEEe-----------cceEEEEecCCCceEEeEecCC----CceEEEEECCCCCEEEEe
Confidence 45566899444 555543 3678999999999888876632 157899999999999885
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.16 Score=51.83 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=85.1
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCC--CEEEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDG--KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG--~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
....|+|+++.+ .-...+...+- ...+....|||-| .-|||...... ..-..+-++.+..+.....-+.
T Consensus 150 v~~sl~i~e~t~---n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 150 VGSSLYIHEITD---NIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKL-----NKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred ccCeEEEEecCC---ccccCchhhcc-ccceeeEEecCCCCCceEEEEccccC-----CCCcEEEEEEccCCCeeeeeee
Confidence 346778887642 11222222222 1247889999964 45677654321 1223444444443332221111
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
... .--.+.|.+.|+.|.+..... + +.++ .|+..+.||
T Consensus 221 fk~----~~~qLkW~~~g~~ll~l~~t~-----------------------------~------ksnK---syfgesnLy 258 (561)
T COG5354 221 FKV----SGVQLKWQVLGKYLLVLVMTH-----------------------------T------KSNK---SYFGESNLY 258 (561)
T ss_pred Eee----cccEEEEecCCceEEEEEEEe-----------------------------e------eccc---ceeccceEE
Confidence 110 123789999999988863210 0 0011 233568899
Q ss_pred EEcCCCC-eeec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 161 LGSLDGT-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 161 ~~d~~g~-~~~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++++++. .+.. .-.+.+.++.|+|++++.++....- +..+.++|+.+...
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----------pa~~s~~~lr~Nl~ 310 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM-----------PASVSVFDLRGNLR 310 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEeccc-----------ccceeecccccceE
Confidence 9999763 2222 2234567899999999988886332 33566777777643
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00096 Score=66.63 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=40.8
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
.....|+|++.+|..|.|||++|.+-+ .++|+||.+|+. |+- ...+.....||++||+||
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~----~~~Pavv~~hGy------------g~~----~~~~~~~~~~a~~G~~vl 113 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK----GKLPAVVQFHGY------------GGR----SGDPFDLLPWAAAGYAVL 113 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS----SSEEEEEEE--T------------T------GGGHHHHHHHHHTT-EEE
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC----CCcCEEEEecCC------------CCC----CCCcccccccccCCeEEE
Confidence 367789999999999999999998522 356999987642 111 011122346899999999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 114 ~ 114 (320)
T PF05448_consen 114 A 114 (320)
T ss_dssp E
T ss_pred E
Confidence 7
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.38 Score=45.28 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=61.7
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+..++||++|.+|+..+.. ..+|+|.++. ++...+.-+. .+...+....|.|-..
T Consensus 108 VK~Vaws~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTED- 163 (312)
T ss_pred eeEEEEcCCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcc-
Confidence 4578999999999988643 3688888763 3332222111 0111123467777543
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccccCccccceeecCCCcEEEEEEeecccceEEEE--Ee
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL--VC 330 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~--~d 330 (595)
|.+-. ...+.+.+++. +.++... .|......+....|.+.|..++.-+ +++...||+ .+
T Consensus 164 -lL~S~-----------SYDnTIk~~~~--~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 164 -LLFSC-----------SYDNTIKVYRD--EDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS--DDGTVSIWRLYTD 227 (312)
T ss_pred -eeEEe-----------ccCCeEEEEee--cCCCCeeEEEEecCccceEEEEEecCCCceEEEec--CCcceEeeeeccC
Confidence 22211 22334444442 1222322 2322233455677888887777654 345567887 45
Q ss_pred CCC
Q 007620 331 PGS 333 (595)
Q Consensus 331 ~~~ 333 (595)
+..
T Consensus 228 ~~~ 230 (312)
T KOG0645|consen 228 LSG 230 (312)
T ss_pred cch
Confidence 443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.58 Score=45.88 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=48.7
Q ss_pred EEEecCCCCCCC-CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc-CCCccc
Q 007620 8 GIHRLLPDDSLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICL 85 (595)
Q Consensus 8 ~~~~~~~~~~~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~-~~~~~~ 85 (595)
||.+.. +| .+-++|++. ..+....||-||..||-- +-..+|.+....+|..+.... .-.
T Consensus 89 flW~~~----~ge~~~eltgHK--DSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~--- 149 (399)
T KOG0296|consen 89 FLWDIS----TGEFAGELTGHK--DSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE--- 149 (399)
T ss_pred EEEEcc----CCcceeEecCCC--CceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC---
Confidence 566776 44 445666433 368899999999877642 234566666777776544432 222
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..+.|.|-+..|++.
T Consensus 150 --dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 150 --DIEWLKWHPRAHILLAG 166 (399)
T ss_pred --ceEEEEecccccEEEee
Confidence 46788999988776664
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0024 Score=66.58 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=48.6
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCccc-CCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS-GMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~-~~~~~~~q~la~~GY~Vl 559 (595)
..|.|+++..||.+|+|+|++|.. + + |.|+||..| |..+.. ..+....+.|+++||+||
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~-~--~--~~P~Vli~g---------------G~~~~~~~~~~~~~~~La~~Gy~vl 226 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG-D--G--PFPTVLVCG---------------GLDSLQTDYYRLFRDYLAPRGIAML 226 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC-C--C--CccEEEEeC---------------CcccchhhhHHHHHHHHHhCCCEEE
Confidence 688999998899999999999973 2 2 448888643 222111 111123478999999999
Q ss_pred eCCCCceeecC
Q 007620 560 AGPSIPIIGEG 570 (595)
Q Consensus 560 ~~~~~~~~~~~ 570 (595)
. +|.|..|..
T Consensus 227 ~-~D~pG~G~s 236 (414)
T PRK05077 227 T-IDMPSVGFS 236 (414)
T ss_pred E-ECCCCCCCC
Confidence 9 999977653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.079 Score=53.93 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=80.1
Q ss_pred cccceEEccCCCEEEEEEeccccc-ccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEED-NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~-~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.-....|.+.|+.|.++..+.-.. ..+-+.++||++++.....+..-...+ .+..+.|.|++++++...
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~-----pVhdf~W~p~S~~F~vi~----- 293 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKD-----PVHDFTWEPLSSRFAVIS----- 293 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccc-----cceeeeecccCCceeEEe-----
Confidence 456789999999999988763211 111345889999997544333222233 577999999999877752
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEE
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
| + ....+-++++.|.++-...+..-..+.|||.+++|+
T Consensus 294 -------------------g-------~----------------~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 294 -------------------G-------Y----------------MPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred -------------------c-------c----------------cccceeecccccceEEecCCcccccccccCcccEEE
Confidence 1 0 112333455555555444333233577999999999
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
+..-... ...+.++|..+.-.
T Consensus 332 ~agF~nl----------~gni~i~~~~~rf~ 352 (561)
T COG5354 332 FAGFDNL----------QGNIEIFDPAGRFK 352 (561)
T ss_pred EecCCcc----------ccceEEeccCCceE
Confidence 8864322 34677888776543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=57.99 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=65.5
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCC-CC-ccC-Ccc-ccc-----cccCCCCce
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PA-EDI-PVC-YNS-----VREGMRSIS 248 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~-~~~-~~~-~~~-----~~~~~~~~~ 248 (595)
..++++|||++|+++... ...|.++|++++..+.+.... .. ..+ ..+ .++ .-..+..+.
T Consensus 743 ~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 743 SGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred cEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 468999999998877542 247889998866554433210 00 000 000 000 001233567
Q ss_pred eecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--------------ccccceeecCCCcEEE
Q 007620 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLALV 314 (595)
Q Consensus 249 wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--------------~~~~~~~wspDg~~l~ 314 (595)
+.++|. ||... . ..+.+.++|. +++....+.... .....+.+++||..++
T Consensus 811 vd~dG~--LYVAD---s--------~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 811 CAKDGQ--IYVAD---S--------YNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred EeCCCc--EEEEE---C--------CCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 788875 54442 1 1234555564 333333222110 1234567888887655
Q ss_pred EEEeecccceEEEEEeCCCC
Q 007620 315 NETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~ 334 (595)
.+. .+..|.++|+.++
T Consensus 875 aDt----~Nn~Irvid~~~~ 890 (1057)
T PLN02919 875 ADT----NNSLIRYLDLNKG 890 (1057)
T ss_pred EEC----CCCEEEEEECCCC
Confidence 543 3447888998874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.3 Score=46.87 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=41.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....+||+-|.+||.-.. ...|.++|..+-. .+.++..-. .+.++.||+||+.|+-.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~----------nG~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA----------NGRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTS 83 (405)
T ss_pred ccceEEeccCcceeeeecc----------CCcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeee
Confidence 4667899999999998664 2456667877744 344443333 57899999999988765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=57.57 Aligned_cols=57 Identities=21% Similarity=0.519 Sum_probs=36.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||.-|.-... ++.-.+| .. +|..+ .|....+ .+-..+|.|++..|+|.
T Consensus 106 A~~~gRW~~dGtgLlt~GE--------DG~iKiW--Sr-sGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGE--------DGVIKIW--SR-SGMLRSTVVQNEE-----SIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhcccCCCCceeeeecC--------CceEEEE--ec-cchHHHHHhhcCc-----eeEEEEECCCCCceEEe
Confidence 4778899999987654421 4455566 43 44433 2322222 45588999999988886
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.043 Score=53.52 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=51.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCC-CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|||+|+++ =.-...|...+ ........+.++.+.+|||-..+ ...+|.++|+.+=++.-......
T Consensus 106 e~IyIydI~~---MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKD---MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEeccc---ceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEecC-
Confidence 4589998873 12222333222 22224455566667799998654 35788888986544332222111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
+.+..+++++||.+|+-.
T Consensus 174 ---~~lAalafs~~G~llATA 191 (391)
T KOG2110|consen 174 ---GPLAALAFSPDGTLLATA 191 (391)
T ss_pred ---CceeEEEECCCCCEEEEe
Confidence 256789999999998875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.59 Score=50.50 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=40.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....|+|++..++.++.. + ..|.++|+.+++......... .+.++.|+|||+.|+..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~-------D--gtIrIWDl~tg~~~~~i~~~~-----~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGF-------D--SFVNIWDIENEKRAFQINMPK-----KLSSLKWNIKGNLLSGT 185 (568)
T ss_pred cEEEEEECCCCCeEEEEEeC-------C--CeEEEEECCCCcEEEEEecCC-----cEEEEEECCCCCEEEEE
Confidence 58889999999987666543 2 456666988776432222222 46789999999988664
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=54.26 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.+...++..+.||||++||+.+- ....||.+..+..- .+.+-..+. .....+.+.++-|+..|++...
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~---------~~~~iy~L~~~~~vk~~~v~~~~~--~~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTV---------SRTKIYRLQPDPNVKVINVDDVPL--ALLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred CCccceeeeccCCCCCEEEEeec---------cceEEEEeccCcceeEEEeccchh--hhccceeeEEEecCceEEEEec
Confidence 44556888999999999999763 35778888776521 222211111 1112346677777776665421
Q ss_pred CCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC----CeeecCC---CCeeee
Q 007620 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TAKDFGT---PAVYTA 179 (595)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~lt~---~~~~~~ 179 (595)
. ..+|..+.+++ +...+.. -.....
T Consensus 449 ~------------------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 449 N------------------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred c------------------------------------------------cceeEEEEecCcchhhhhccccccCCCccee
Confidence 0 11223333311 1112211 124567
Q ss_pred eEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEec
Q 007620 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (595)
Q Consensus 180 ~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~ 225 (595)
+..||||++|++.... ..|++|++++++.+.+.
T Consensus 481 l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 8899999999999742 38999999999887765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.72 Score=45.69 Aligned_cols=135 Identities=14% Similarity=0.059 Sum_probs=63.7
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCC-CceeecCCCee
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPST 256 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~wspdg~~~ 256 (595)
....++.++.+++|.+. ...++..|+.+...+.....+...+... -.+++.+.. .+++.+... .
T Consensus 187 ~~~~~~~~~~~~~F~Sy-------------~G~v~~~dlsg~~~~~~~~~~~~t~~e~-~~~WrPGG~Q~~A~~~~~~-r 251 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSY-------------EGNVYSADLSGDSAKFGKPWSLLTDAEK-ADGWRPGGWQLIAYHAASG-R 251 (342)
T ss_dssp S--EEETTTTEEEEEBT-------------TSEEEEEEETTSSEEEEEEEESS-HHHH-HTTEEE-SSS-EEEETTTT-E
T ss_pred cccceECCCCeEEEEec-------------CCEEEEEeccCCcccccCcccccCcccc-ccCcCCcceeeeeeccccC-e
Confidence 35566777777777764 3478888888776655543322110000 011222222 244444333 3
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
||.+-. .+....--.....+|++|+ +.++...-...+....++..|.|.+-++|.-.. ....|+++|+.++
T Consensus 252 lyvLMh--~g~~gsHKdpgteVWv~D~---~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMH--QGGEGSHKDPGTEVWVYDL---KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEE--E--TT-TTS-EEEEEEEET---TTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT-
T ss_pred EEEEec--CCCCCCccCCceEEEEEEC---CCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCC
Confidence 554422 2211111133347888886 322222222333345578888888865543222 2237999999884
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.4 Score=46.23 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=26.3
Q ss_pred Ccee-ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 290 KPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 290 ~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.+-. |....+.+....|.+||..|...+.. . ..|...|+.-
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk-~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-D--DKILCWDIRY 282 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccC-C--CeEEEEeehh
Confidence 4433 44556778899999999987665321 1 2566667653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.2 Score=49.26 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=60.9
Q ss_pred CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCcEEEEEEeecccce
Q 007620 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (595)
Q Consensus 246 ~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (595)
.++|..||+. +.+...+... ..+..+.+++- + |+.....+ .++--..++|.|.|..++.... .....
T Consensus 214 ~ISWRGDG~y--FAVss~~~~~-----~~~R~iRVy~R---e-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEY--FAVSSVEPET-----GSRRVIRVYSR---E-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRH 281 (928)
T ss_pred EEEECCCCcE--EEEEEEEcCC-----CceeEEEEECC---C-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCc
Confidence 5889999983 2222222111 01335566663 3 34433322 2333567899999998776543 23345
Q ss_pred EEEEEeCCCCCCCcEE--E-e---ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEe
Q 007620 325 RTWLVCPGSKDVAPRV--L-F---DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (595)
Q Consensus 325 ~L~~~d~~~~~~~~~~--l-~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~ 384 (595)
.|..+...|- .... | + +..+.. +.|+.|+..|++...+ ..++|.+
T Consensus 282 ~VvFfErNGL--rhgeF~l~~~~~~~~v~~---------l~Wn~ds~iLAv~~~~----~vqLWt~ 332 (928)
T PF04762_consen 282 DVVFFERNGL--RHGEFTLRFDPEEEKVIE---------LAWNSDSEILAVWLED----RVQLWTR 332 (928)
T ss_pred EEEEEecCCc--EeeeEecCCCCCCceeeE---------EEECCCCCEEEEEecC----CceEEEe
Confidence 6767766652 1111 1 1 111222 8999999998886632 4566644
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.095 Score=50.21 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=48.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEEC-CCC---ceEecccC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETG---EAKPLFES 80 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~-~~g---~~~~lt~~ 80 (595)
++|-|++|+ +.-..-|-+ .--.....+.||||+.||...-. ....+|-.=. +.| +..+++..
T Consensus 209 t~i~lw~lk----Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 209 TKICLWDLK----GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CcEEEEecC----Cceeeeecc--ccccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhhee
Confidence 467778776 433333321 11135578999999998876543 1233443211 233 34555444
Q ss_pred CCccccccccceEEecCCcEEEEEe
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
++. ...+.++.|||++++++-.+
T Consensus 275 kGH--~saV~~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 275 KGH--QSAVLAAAFSNSSTRAVTVS 297 (420)
T ss_pred ccc--hhheeeeeeCCCcceeEEEe
Confidence 431 11345889999999987764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.3 Score=50.67 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=44.8
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|+|+. +++. ..+.. ....+....|+| ||..|+-.+. ...|.++|+.++..........
T Consensus 556 ~v~lWd~~----~~~~~~~~~~--H~~~V~~l~~~p~~~~~L~Sgs~----------Dg~v~iWd~~~~~~~~~~~~~~- 618 (793)
T PLN00181 556 VVQVWDVA----RSQLVTEMKE--HEKRVWSIDYSSADPTLLASGSD----------DGSVKLWSINQGVSIGTIKTKA- 618 (793)
T ss_pred eEEEEECC----CCeEEEEecC--CCCCEEEEEEcCCCCCEEEEEcC----------CCEEEEEECCCCcEEEEEecCC-
Confidence 46677876 4433 33332 223578899997 6776554432 2456677887776433222221
Q ss_pred cccccccceEEe-cCCcEEEEE
Q 007620 84 CLNAVFGSFVWV-NNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Ws-pdg~~l~~~ 104 (595)
.+..+.|+ ++|..|+..
T Consensus 619 ----~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 619 ----NICCVQFPSESGRSLAFG 636 (793)
T ss_pred ----CeEEEEEeCCCCCEEEEE
Confidence 34567785 567777764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.07 Score=51.98 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=51.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEE-EECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI-ADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v-~d~~~g~~~~lt~~~~~ 83 (595)
+.|-|.|.. +|.-.+|.- ...+.++..+|||||.+|.. +.. +..-.||- -...+.+ +.++...
T Consensus 218 ssi~iWdpd----tg~~~pL~~-~glgg~slLkwSPdgd~lfa-At~-------davfrlw~e~q~wt~e-rw~lgsg-- 281 (445)
T KOG2139|consen 218 SSIMIWDPD----TGQKIPLIP-KGLGGFSLLKWSPDGDVLFA-ATC-------DAVFRLWQENQSWTKE-RWILGSG-- 281 (445)
T ss_pred ceEEEEcCC----CCCcccccc-cCCCceeeEEEcCCCCEEEE-ecc-------cceeeeehhcccceec-ceeccCC--
Confidence 456777776 777667752 23336889999999997644 433 44566772 2222333 3332211
Q ss_pred cccccccceEEecCCcEEEEEec
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.+....|+|+|+.|+|+..
T Consensus 282 ----rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 282 ----RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ----ceeeeeecCCCCEEEEEEc
Confidence 4567899999999999743
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.93 Score=45.11 Aligned_cols=42 Identities=10% Similarity=0.294 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCCCCcEEEee-cccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 323 QTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
...+|++|.++ -+|-...+ -.+. .+.+ .+|++||..+++++.
T Consensus 320 ~~svyvydtq~--~~P~~~v~nihy~-~iTD-----iaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 320 KNSVYVYDTQT--LEPLAVVDNIHYS-AITD-----IAWSDDGSVLLVSST 362 (434)
T ss_pred cceEEEecccc--ccceEEEeeeeee-eecc-----eeecCCCcEEEEecc
Confidence 44789998776 33433322 1111 1222 899999999888764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.4 Score=42.26 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=38.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|+|||..+|-.. ...+|+++++.+-. .-.+...+. -+..+.|..|+..|+..
T Consensus 49 eI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSC 108 (338)
T ss_pred eEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEe
Confidence 577889999999765432 34678888875432 222222222 35689999999988775
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.097 Score=54.57 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=39.2
Q ss_pred eEEEecCCCCC--CCCceeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceE
Q 007620 7 IGIHRLLPDDS--LGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (595)
Q Consensus 7 ~~~~~~~~~~~--~g~~~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (595)
|.|++|..+++ +|. +-++..+..+....|.| |-++||.... ++.-+||.+...++...
T Consensus 605 iai~el~~PGrLPDgv---~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGV---MPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPEN 665 (1012)
T ss_pred EEEEEcCCCCCCCccc---ccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcc
Confidence 66777764333 222 22234555788999999 8999998764 56789999987665533
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.48 Score=54.49 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=45.6
Q ss_pred eEEEEcCCCCeeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 158 QLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 158 ~l~~~d~~g~~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
.+-+++.+|+..-..++ +....++|.|.|..|+.+.. .+. ..+|..+..+|-+..+..-....++
T Consensus 238 ~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~---------~~~VvFfErNGLrhgeF~l~~~~~~--- 304 (928)
T PF04762_consen 238 VIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPD---------RHDVVFFERNGLRHGEFTLRFDPEE--- 304 (928)
T ss_pred EEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEE-cCC---------CcEEEEEecCCcEeeeEecCCCCCC---
Confidence 45556666665544433 24457899999999988864 221 2366667777765544321100000
Q ss_pred cccccccCCCCceeecCCCe
Q 007620 236 CYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~ 255 (595)
.....+.|++|+.-
T Consensus 305 ------~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 305 ------EKVIELAWNSDSEI 318 (928)
T ss_pred ------ceeeEEEECCCCCE
Confidence 11346899999873
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.29 Score=49.63 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=70.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC-CceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.++..+|.|-.-+|...... ...|+++++-+ +...+.+..- +..+..+.|+++|+.++-...+
T Consensus 216 gvsai~~fp~~~hLlLS~gm---------D~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM---------DGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecCC---------CceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---
Confidence 48899999954466554432 35666667654 4433332111 2357799999999987664221
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCe
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~ 188 (595)
..|-.+|+ +|+ ...+..+.....+.+.||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 11233455 553 333444444457889999987
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++++... ...|..||+.++++
T Consensus 314 ~fl~G~s------------d~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 314 IFLVGGS------------DKKIRQWDIRSGKV 334 (503)
T ss_pred EEEEecC------------CCcEEEEeccchHH
Confidence 8777643 34788999887664
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.91 Score=42.73 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=50.9
Q ss_pred EEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-------CCce-Eeccc
Q 007620 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGEA-KPLFE 79 (595)
Q Consensus 8 ~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-------~g~~-~~lt~ 79 (595)
-|+|++ +|+..-.. ..+..+....||++|++++++..... ....-|.+.++. +.++ ..|..
T Consensus 77 kLWDv~----tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 77 KLWDVE----TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred EEEEcC----CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecC
Confidence 466776 66554333 34445888899999999999875421 234567777776 3332 22221
Q ss_pred CCCccccccccceEEecCCcEEEEE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
... .+....|+|-++.|+..
T Consensus 146 ~~s-----kit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 146 PDS-----KITSALWGPLGETIIAG 165 (327)
T ss_pred Ccc-----ceeeeeecccCCEEEEe
Confidence 111 45678899999987774
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.49 Score=45.44 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=59.3
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++....|++||.+|+-.+.+ ..+-+|+..+.+.-.-. .|..++.|+ ......|-...
T Consensus 350 yvn~a~ft~dG~~iisaSsD-------------gtvkvW~~KtteC~~Tf-k~~~~d~~v---------nsv~~~PKnpe 406 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSD-------------GTVKVWHGKTTECLSTF-KPLGTDYPV---------NSVILLPKNPE 406 (508)
T ss_pred cccceEEcCCCCeEEEecCC-------------ccEEEecCcchhhhhhc-cCCCCcccc---------eeEEEcCCCCc
Confidence 55678999999999877643 25677887654332111 011111111 01111122211
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc---cCccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
.+... +..+.+|+.+. .|.-.+.+.. ..+.+-+...||.|.+++... +++ .||-+...
T Consensus 407 h~iVC------------Nrsntv~imn~---qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~--vlYCF~~~ 467 (508)
T KOG0275|consen 407 HFIVC------------NRSNTVYIMNM---QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDG--VLYCFSVL 467 (508)
T ss_pred eEEEE------------cCCCeEEEEec---cceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCc--EEEEEEee
Confidence 11111 11235666564 4422333332 235566778899999766542 223 68888776
Q ss_pred CC
Q 007620 333 SK 334 (595)
Q Consensus 333 ~~ 334 (595)
++
T Consensus 468 sG 469 (508)
T KOG0275|consen 468 SG 469 (508)
T ss_pred cC
Confidence 64
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.026 Score=55.44 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=39.8
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCC
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (595)
..+.+||.+|.||+..|.+-+. + |.|+||.+|+- ++...+ +...+.+|+++||+|+. +|
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~~-~--~~~~vIi~HGf------------~~~~~~---~~~~A~~La~~G~~vLr-fD 71 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENSP-K--KNNTILIASGF------------ARRMDH---FAGLAEYLSSNGFHVIR-YD 71 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccCC-C--CCCEEEEeCCC------------CCChHH---HHHHHHHHHHCCCEEEE-ec
Confidence 4567899999999999975332 2 33888887641 222111 11235799999999998 55
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.068 Score=59.04 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=37.3
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEec-ccCCCccccccccceEEecCCcEEEE
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l-t~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+|||+... ..+|.++|.++..++.| +.... .+-.+.|||||+.|+|
T Consensus 319 tkiAfv~~~---------~~~L~~~D~dG~n~~~ve~~~~~-----~i~sP~~SPDG~~vAY 366 (912)
T TIGR02171 319 AKLAFRNDV---------TGNLAYIDYTKGASRAVEIEDTI-----SVYHPDISPDGKKVAF 366 (912)
T ss_pred eeEEEEEcC---------CCeEEEEecCCCCceEEEecCCC-----ceecCcCCCCCCEEEE
Confidence 478888742 23999999999888887 65544 4568999999999999
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.18 Score=52.67 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=56.9
Q ss_pred ceeeeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
|..-|-|+||+ +++. -.+.++.. ++....|||||+++|-+.. ...|.++....++ .+|....
T Consensus 698 yd~Ti~lWDl~----~~~~~~~l~gHtd--qIf~~AWSpdGr~~AtVcK----------Dg~~rVy~Prs~e-~pv~Eg~ 760 (1012)
T KOG1445|consen 698 YDSTIELWDLA----NAKLYSRLVGHTD--QIFGIAWSPDGRRIATVCK----------DGTLRVYEPRSRE-QPVYEGK 760 (1012)
T ss_pred ccceeeeeehh----hhhhhheeccCcC--ceeEEEECCCCcceeeeec----------CceEEEeCCCCCC-CccccCC
Confidence 45567788998 4544 35554443 5889999999999999875 2568888887665 3343222
Q ss_pred CccccccccceEEecCCcEEEEEe
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
. ..++.-..+.|.=||+.|+++.
T Consensus 761 g-pvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 761 G-PVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred C-CccCcceeEEEEecCcEEEEec
Confidence 1 1122223788999999988863
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.9 Score=41.02 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=52.1
Q ss_pred eEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
+++.|.. +|+.. .++.-+..-...+.+|||||++| |++..+-+ .+..-|-|+|+. ...+++-..+...+
T Consensus 30 ~~v~D~~----~g~~~~~~~a~~gRHFyGHg~fs~dG~~L-ytTEnd~~----~g~G~IgVyd~~-~~~~ri~E~~s~GI 99 (305)
T PF07433_consen 30 ALVFDCR----TGQLLQRLWAPPGRHFYGHGVFSPDGRLL-YTTENDYE----TGRGVIGVYDAA-RGYRRIGEFPSHGI 99 (305)
T ss_pred EEEEEcC----CCceeeEEcCCCCCEEecCEEEcCCCCEE-EEeccccC----CCcEEEEEEECc-CCcEEEeEecCCCc
Confidence 3445665 66555 44432222256689999999876 55543322 456778899987 33445533333211
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
+...+.|.|||+.|++.
T Consensus 100 --GPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 100 --GPHELLLMPDGETLVVA 116 (305)
T ss_pred --ChhhEEEcCCCCEEEEE
Confidence 23388999999888875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.9 Score=46.81 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=45.1
Q ss_pred cceEEEEcCCCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 156 TAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
+.+||.+..+.-++.....++++.++|.|-...-+++..- ..++-+|++-..++-.-++..
T Consensus 391 TVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL------------D~KvRiWsI~d~~Vv~W~Dl~------- 451 (712)
T KOG0283|consen 391 TVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL------------DGKVRLWSISDKKVVDWNDLR------- 451 (712)
T ss_pred cEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc------------ccceEEeecCcCeeEeehhhh-------
Confidence 3455544433345555667788899999965544444321 346778887766554433331
Q ss_pred cccccccCCCCceeecCCCeeE
Q 007620 236 CYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l 257 (595)
.-...+.++|||++.|
T Consensus 452 ------~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 452 ------DLITAVCYSPDGKGAV 467 (712)
T ss_pred ------hhheeEEeccCCceEE
Confidence 1134578899998644
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.1 Score=43.12 Aligned_cols=119 Identities=11% Similarity=0.223 Sum_probs=61.5
Q ss_pred CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeec
Q 007620 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 172 t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
.+-..+..++|.|.|.+|++.+.+ | .+.+||+++-....-+. |.. .+........+++
T Consensus 214 qd~~~vrsiSfHPsGefllvgTdH-p------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSGEFLLVGTDH-P------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQVRYSS 271 (430)
T ss_pred hccceeeeEeecCCCceEEEecCC-C------------ceeEEeccceeEeeecC-ccc--------ccccceeEEEecC
Confidence 333456789999999999988643 3 46677877654433221 210 0111223567787
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
.|+ ||.....| ..+.+||- ..+.=.+.+.+ ....+..+.|+.+|+.+.... .+....||.+
T Consensus 272 t~~--lYvTaSkD-----------G~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLWEi 334 (430)
T KOG0640|consen 272 TGS--LYVTASKD-----------GAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLWEI 334 (430)
T ss_pred Ccc--EEEEeccC-----------CcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccceeeeeee
Confidence 776 55442222 23444441 11100111111 122456788999999876542 2233356655
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.041 Score=35.71 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=23.6
Q ss_pred eccccCccccceeecCCCcEEEEEEeec-ccceEEEE
Q 007620 293 ILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (595)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~L~~ 328 (595)
+++...+....+.|||||+.|+|.+... .+..+||+
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4455555677899999999988876433 25567764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.051 Score=54.99 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeE
Q 007620 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFA 557 (595)
Q Consensus 479 ~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~ 557 (595)
.++.+...|++.||.+|+++.+.|.+-.+ +.|+||++|+ ..... .+.+ ...+.|+++||.
T Consensus 29 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~----~~~~VvllHG--------------~~~~~-~~~~~~~~~~L~~~Gy~ 89 (330)
T PLN02298 29 GIKGSKSFFTSPRGLSLFTRSWLPSSSSP----PRALIFMVHG--------------YGNDI-SWTFQSTAIFLAQMGFA 89 (330)
T ss_pred CCccccceEEcCCCCEEEEEEEecCCCCC----CceEEEEEcC--------------CCCCc-ceehhHHHHHHHhCCCE
Confidence 34667778899999999999998865211 3388998764 21111 1111 124578899999
Q ss_pred EEeCCCCceeec
Q 007620 558 VLAGPSIPIIGE 569 (595)
Q Consensus 558 Vl~~~~~~~~~~ 569 (595)
|+. +|.|..|.
T Consensus 90 V~~-~D~rGhG~ 100 (330)
T PLN02298 90 CFA-LDLEGHGR 100 (330)
T ss_pred EEE-ecCCCCCC
Confidence 999 88888775
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.62 Score=47.53 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=51.9
Q ss_pred ceeeeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccC
Q 007620 3 FFTGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFES 80 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~ 80 (595)
+.+.|-|+||.- .+-.. -++| ...........|||.+ |+|..-. ..+|-++|+.... .+++-..
T Consensus 485 eastlsiWDLAa--pTprikaelt--ssapaCyALa~spDak-vcFsccs---------dGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 485 EASTLSIWDLAA--PTPRIKAELT--SSAPACYALAISPDAK-VCFSCCS---------DGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred ccceeeeeeccC--CCcchhhhcC--CcchhhhhhhcCCccc-eeeeecc---------CCcEEEEEcccceeeecccCC
Confidence 567888999972 11111 1333 2333566789999996 6786643 2567777887654 4555444
Q ss_pred CCccccccccceEEecCCcEEEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+ +.+.+..|+||..|.-
T Consensus 551 tD-----GascIdis~dGtklWT 568 (705)
T KOG0639|consen 551 TD-----GASCIDISKDGTKLWT 568 (705)
T ss_pred CC-----CceeEEecCCCceeec
Confidence 44 5678889999987643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.27 Score=48.80 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
+.+..+.....|+||..|.-.+ + ...|-++|+.+.+.++.+...........+...||||+++++-..
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsss-R---------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-- 406 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSS-R---------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-- 406 (459)
T ss_pred ecCcceeeEeeccCCeEEeeec-C---------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc--
Confidence 4555799999999999887664 3 245777899988888776544332233456788999999765531
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecCC---CCeeeeeEE
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGT---PAVYTAVEP 182 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~---~~~~~~~~~ 182 (595)
....||++++ +|+.. .|.. ...+..++|
T Consensus 407 -----------------------------------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 407 -----------------------------------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred -----------------------------------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 1245777888 55544 3322 224678999
Q ss_pred CCCCCeEEEEE
Q 007620 183 SPDQKYVLITS 193 (595)
Q Consensus 183 SpDg~~l~~~~ 193 (595)
+|-|+.++-..
T Consensus 440 ~~sG~~Llsad 450 (459)
T KOG0288|consen 440 NPSGSGLLSAD 450 (459)
T ss_pred cCCCchhhccc
Confidence 99999987664
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.2 Score=44.20 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred cceEEEEcCCCCeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 156 TAQLVLGSLDGTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
...||+++..|..+.+.... .-..++|||||+.++++-.. ...|+.++.+
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 35799999866555444332 33489999999988888543 2367777654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.023 Score=58.01 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=41.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+..|||||++||-++. + .-|-+.+..+.+..-+.+.-- ++.-.+.||||||+|+.-
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------D--GfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------D--GFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEec--------C--ceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEec
Confidence 5788899999999999985 2 345556776666555533211 134477999999998774
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.27 Score=48.82 Aligned_cols=142 Identities=12% Similarity=0.176 Sum_probs=76.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
.++..+||++|.+++-.. .. ..|-+|+..-..++.+... ..+..+.+++||....
T Consensus 140 ~Vr~m~ws~~g~wmiSgD-~g------------G~iKyWqpnmnnVk~~~ah------------h~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGD-KG------------GMIKYWQPNMNNVKIIQAH------------HAEAIRDLAFSPNDSK 194 (464)
T ss_pred cceeEEEccCCCEEEEcC-CC------------ceEEecccchhhhHHhhHh------------hhhhhheeccCCCCce
Confidence 456889999999876442 21 2455565554433332211 1123466777775432
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~ 335 (595)
|+.+.|. ..+.+||. ....+.+.|....+.+..+.|.|.-..++... ++. -+-+.|..+++
T Consensus 195 ---F~t~SdD----------g~ikiWdf--~~~kee~vL~GHgwdVksvdWHP~kgLiasgs--kDn--lVKlWDprSg~ 255 (464)
T KOG0284|consen 195 ---FLTCSDD----------GTIKIWDF--RMPKEERVLRGHGWDVKSVDWHPTKGLIASGS--KDN--LVKLWDPRSGS 255 (464)
T ss_pred ---eEEecCC----------CeEEEEec--cCCchhheeccCCCCcceeccCCccceeEEcc--CCc--eeEeecCCCcc
Confidence 4444332 34555553 22334556666667788999999754444432 122 34456877741
Q ss_pred CCcEEE--eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 336 VAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 336 ~~~~~l--~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..-.| ....+-. +.|+++|.+|+...
T Consensus 256 -cl~tlh~HKntVl~---------~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 256 -CLATLHGHKNTVLA---------VKFNPNGNWLLTGS 283 (464)
T ss_pred -hhhhhhhccceEEE---------EEEcCCCCeeEEcc
Confidence 11111 1222333 78899998776654
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.052 Score=59.11 Aligned_cols=64 Identities=27% Similarity=0.450 Sum_probs=41.8
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
+.+||.+|.+.+++|.+ . + +.|+||++||- +.... .........++|+++||+|+. ++...
T Consensus 2 ~~~DG~~L~~~~~~P~~-~--~--~~P~Il~~~gy------------g~~~~~~~~~~~~~~~~l~~~Gy~vv~-~D~RG 63 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-G--G--PVPVILSRTPY------------GKDAGLRWGLDKTEPAWFVAQGYAVVI-QDTRG 63 (550)
T ss_pred cCCCCCEEEEEEEecCC-C--C--CCCEEEEecCC------------CCchhhccccccccHHHHHhCCcEEEE-Eeccc
Confidence 46899999999999975 1 2 45999997742 11100 000111234789999999999 66665
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 64 ~g~ 66 (550)
T TIGR00976 64 RGA 66 (550)
T ss_pred ccc
Confidence 554
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.3 Score=47.70 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCceEecccCCC---ccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPD---ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~---~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.+||++..+-.+. +..-.+|-..+ ..|..+.+....+ ..+...+.....||||+.|++.
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 4777899999998766543 34445553221 2233222111111 0111145688999999999885
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.8 Score=44.20 Aligned_cols=146 Identities=15% Similarity=0.095 Sum_probs=73.8
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCC-CC-C
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR-RD-P 112 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~-~~-~ 112 (595)
.-++|||+.|. ..+ +..+-+-++|.++.+. .+|.- .. ......+++||++++++..... +. +
T Consensus 198 ~PlpnDGk~l~-~~~--------ey~~~vSvID~etmeV~~qV~V-dg-----npd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLD-DPK--------KYRSLFTAVDAETMEVAWQVMV-DG-----NLDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEee-ccc--------ceeEEEEEEECccceEEEEEEe-CC-----CcccceECCCCCEEEEeccCcccCcce
Confidence 34677887552 221 3456778889887653 23211 11 3356789999999888753211 11 0
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C----C-C-eeecCCCCeeeeeEECCC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~----g-~-~~~lt~~~~~~~~~~SpD 185 (595)
... ...+......-. ........ .++. +.+....++-++|. + + + ...|..+.....+.+|||
T Consensus 263 ~em-~a~e~d~~vvfn------i~~iea~v---kdGK-~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEM-MAAERDWVVVFN------IARIEEAV---KAGK-FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eee-ccccCceEEEEc------hHHHHHhh---hCCC-EEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 000 000000000000 00000000 1111 22223456888887 4 2 2 233445555678999999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
|++++++.... ..+.++|++..
T Consensus 332 GkylyVanklS------------~tVSVIDv~k~ 353 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRKL 353 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChhh
Confidence 99998885433 36778887653
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.11 Score=51.37 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=44.7
Q ss_pred ceEEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~-~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++.+ .=|.++...+|+|+. .+++++ |+|++.|+.. +.+..|.... .-.++++.+||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~--Pvv~~lHG~~-----------~~~~~~~~~~-~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKV--PVLYWLSGLT-----------CTDENFIQKS-GAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCC--CEEEEecCCC-----------cChHHHHHhh-hHHHHHhhcCeEEE
Confidence 566666766 467899999999994 444545 9999987421 1122221111 11357778899999
Q ss_pred eCCCCce
Q 007620 560 AGPSIPI 566 (595)
Q Consensus 560 ~~~~~~~ 566 (595)
. |+.+.
T Consensus 82 ~-pd~~~ 87 (283)
T PLN02442 82 A-PDTSP 87 (283)
T ss_pred e-cCCCC
Confidence 9 77654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.44 Score=46.01 Aligned_cols=110 Identities=11% Similarity=0.177 Sum_probs=73.0
Q ss_pred eeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 22 KEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 22 ~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
++.|+++... .+...+||+|..++|-... +.-+.||+.|+..-+...+.-..+ .+..+.|.|.-.+
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--------~~PnalW~Wdlq~l~l~avLiQk~-----piraf~WdP~~pr 375 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRND--------KYPNALWLWDLQNLKLHAVLIQKH-----PIRAFEWDPGRPR 375 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecC--------CCCceEEEEechhhhhhhhhhhcc-----ceeEEEeCCCCce
Confidence 4455544432 4678899999987654322 456889999997666555443333 5678999998887
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCCC-eee
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYT 178 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~-~~~ 178 (595)
|+... | .++||...++| ....+..++ .+.
T Consensus 376 L~vct------------------------g-------------------------~srLY~W~psg~~~V~vP~~GF~i~ 406 (447)
T KOG4497|consen 376 LVVCT------------------------G-------------------------KSRLYFWAPSGPRVVGVPKKGFNIQ 406 (447)
T ss_pred EEEEc------------------------C-------------------------CceEEEEcCCCceEEecCCCCceee
Confidence 77741 1 24677777777 233444444 345
Q ss_pred eeEECCCCCeEEEEE
Q 007620 179 AVEPSPDQKYVLITS 193 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~ 193 (595)
.+.|.-+|..|+...
T Consensus 407 ~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 407 KLQWLQPGEFIVLCG 421 (447)
T ss_pred eEEecCCCcEEEEEc
Confidence 889999999987764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=7.4 Score=38.66 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred eEEeccCCCCCCCCceecccc-CccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 277 IIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 277 ~~~~~d~~~~~g~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
.+|.++. .| ....+... -.....++||||++.+++.. +...+||.++++
T Consensus 144 ~lyr~~p---~g-~~~~l~~~~~~~~NGla~SpDg~tly~aD---T~~~~i~r~~~d 193 (307)
T COG3386 144 SLYRVDP---DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVAD---TPANRIHRYDLD 193 (307)
T ss_pred eEEEEcC---CC-CEEEeecCcEEecCceEECCCCCEEEEEe---CCCCeEEEEecC
Confidence 5676673 33 44443333 33345689999998766543 233478888876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=6.9 Score=40.12 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=114.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|=-||+.+|.- +....+-++|.++..+.+.....+. .+....|+|++..++....+
T Consensus 70 ~v~s~~fR~DG~LlaaG----------D~sG~V~vfD~k~r~iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAG----------DESGHVKVFDMKSRVILRQLYAHQA----PVHVTKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred ceeEEEeecCCeEEEcc----------CCcCcEEEeccccHHHHHHHhhccC----ceeEEEecccCCeEEEecCC----
Confidence 47788888999876553 2334555667655333333222221 45577889888766665221
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeee--c-CCCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKD--F-GTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--l-t~~~~~~~~~~SpDg~~ 188 (595)
++ ..++ +|+++...+ | +..+++...+|+|-..+
T Consensus 132 ------------------d~------------------------v~k~--~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 132 ------------------DK------------------------VVKY--WDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred ------------------Cc------------------------eEEE--EEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 10 1112 223221112 2 23457788999999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCC--ceEEEecc-CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+++..- ...+-+||+.. .....+.. .|. ...-.-|.|.. |+.
T Consensus 168 ivvtGsY------------Dg~vrl~DtR~~~~~v~elnhg~pV---------------e~vl~lpsgs~-ias------ 213 (487)
T KOG0310|consen 168 IVVTGSY------------DGKVRLWDTRSLTSRVVELNHGCPV---------------ESVLALPSGSL-IAS------ 213 (487)
T ss_pred EEEecCC------------CceEEEEEeccCCceeEEecCCCce---------------eeEEEcCCCCE-EEE------
Confidence 9988643 34677788653 33444422 211 12333344441 211
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceec-cccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~ 344 (595)
.....+.+||+ .+|++.... ....-.+++..+..|+..|+...- ++ ++-++|.+. -+.+...
T Consensus 214 -------AgGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL--D~--~VKVfd~t~----~Kvv~s~ 276 (487)
T KOG0310|consen 214 -------AGGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL--DR--HVKVFDTTN----YKVVHSW 276 (487)
T ss_pred -------cCCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccc--cc--ceEEEEccc----eEEEEee
Confidence 22345677786 234332221 112234567777777777666532 23 444455433 3444333
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 345 VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+...+ .....+||++.+++.-
T Consensus 277 ~~~~pv-----Lsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 277 KYPGPV-----LSIAVSPDDQTVVIGM 298 (487)
T ss_pred ecccce-----eeEEecCCCceEEEec
Confidence 222211 1167788888887654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.39 Score=49.39 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=13.4
Q ss_pred eeeEECCCCCeEEEEE
Q 007620 178 TAVEPSPDQKYVLITS 193 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~ 193 (595)
.-++||||||+|+.-.
T Consensus 336 LCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGG 351 (636)
T ss_pred EEEEEcCCccEEEecC
Confidence 3679999999998764
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.057 Score=54.96 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=42.8
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~Vl 559 (595)
..|.+.++= +|.+|.|+|.+|.+ ++ |.|+||.+ ||...+..-.+ ....+|+.+|+++|
T Consensus 164 ~i~~v~iP~-eg~~I~g~LhlP~~---~~--p~P~VIv~---------------gGlDs~qeD~~~l~~~~l~~rGiA~L 222 (411)
T PF06500_consen 164 PIEEVEIPF-EGKTIPGYLHLPSG---EK--PYPTVIVC---------------GGLDSLQEDLYRLFRDYLAPRGIAML 222 (411)
T ss_dssp EEEEEEEEE-TTCEEEEEEEESSS---SS---EEEEEEE-----------------TTS-GGGGHHHHHCCCHHCT-EEE
T ss_pred CcEEEEEee-CCcEEEEEEEcCCC---CC--CCCEEEEe---------------CCcchhHHHHHHHHHHHHHhCCCEEE
Confidence 577778874 56999999999983 23 56999975 34343322211 22357899999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. -+||..|+
T Consensus 223 t-vDmPG~G~ 231 (411)
T PF06500_consen 223 T-VDMPGQGE 231 (411)
T ss_dssp E-E--TTSGG
T ss_pred E-EccCCCcc
Confidence 9 88898886
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.2 Score=45.59 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=84.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
+|-|+.++. +.+...++ .+.+..+...++||-.+.+.-++.. ...+.++|+.+..+.--....+
T Consensus 144 diiih~~~t---~~~tt~f~-~~sgqsvRll~ys~skr~lL~~asd---------~G~VtlwDv~g~sp~~~~~~~H--- 207 (673)
T KOG4378|consen 144 DIIIHGTKT---KQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIASD---------KGAVTLWDVQGMSPIFHASEAH--- 207 (673)
T ss_pred cEEEEeccc---Ccccccee-cCCCCeEEEeecccccceeeEeecc---------CCeEEEEeccCCCcccchhhhc---
Confidence 567777772 44556666 4555566689999999988877642 3455666886655432211111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
.+.-..+.++|....|+... | . ...|+++|..
T Consensus 208 sAP~~gicfspsne~l~vsV------------------------G---------------~---------Dkki~~yD~~ 239 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSV------------------------G---------------Y---------DKKINIYDIR 239 (673)
T ss_pred cCCcCcceecCCccceEEEe------------------------c---------------c---------cceEEEeecc
Confidence 12345788999988877752 1 1 1245666652
Q ss_pred -C-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 166 -G-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 166 -g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
. ....|+-..-...++|+++|.+|+....+ .+|+.||+.+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~-------------G~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSK-------------GELIAYDMRST 282 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCC-------------ceEEEEecccC
Confidence 2 23345444445688999999988766532 37888998743
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.13 Score=49.02 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=41.0
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.+.+++.+.| .++.|++.+|.+-. +.|+||.+|+ +. |-+. ....-...||.+||+|+.
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~~-----~~P~VIv~he-----------i~-Gl~~---~i~~~a~rlA~~Gy~v~~- 59 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGAG-----GFPGVIVLHE-----------IF-GLNP---HIRDVARRLAKAGYVVLA- 59 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcCC-----CCCEEEEEec-----------cc-CCch---HHHHHHHHHHhCCcEEEe-
Confidence 3567887766 89999999998732 2299998764 21 1111 111224799999999999
Q ss_pred CCC
Q 007620 562 PSI 564 (595)
Q Consensus 562 ~~~ 564 (595)
|++
T Consensus 60 Pdl 62 (236)
T COG0412 60 PDL 62 (236)
T ss_pred chh
Confidence 554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=9.7 Score=39.07 Aligned_cols=195 Identities=11% Similarity=0.097 Sum_probs=104.1
Q ss_pred CcccceEEccCCC-EEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 31 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
..++..+|||.-- .+|.+++ .+.+|| +..+-..+ .+..... .+.+..+-.||++|+..-
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S---------~rvqly--~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD--- 87 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS---------VRVQLY--SSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGD--- 87 (487)
T ss_pred CcceeEecCCCCCCceEEecc---------cEEEEE--ecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccC---
Confidence 3588899999433 3455543 346666 44443332 2444444 456778889999876630
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC--CeeecCC-CCeeeeeEECCC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGT-PAVYTAVEPSPD 185 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~lt~-~~~~~~~~~SpD 185 (595)
..+++-++|... ..+++-. ........|+|+
T Consensus 88 ----------------------------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~ 121 (487)
T KOG0310|consen 88 ----------------------------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ 121 (487)
T ss_pred ----------------------------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEeccc
Confidence 023344455422 2233321 123456789999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
+..++.+..+. ..+-.||+.+..+ + .+....+ ..+|..+|+|-... +.+- +
T Consensus 122 d~t~l~s~sDd------------~v~k~~d~s~a~v-~-~~l~~ht----------DYVR~g~~~~~~~h-ivvt----G 172 (487)
T KOG0310|consen 122 DNTMLVSGSDD------------KVVKYWDLSTAYV-Q-AELSGHT----------DYVRCGDISPANDH-IVVT----G 172 (487)
T ss_pred CCeEEEecCCC------------ceEEEEEcCCcEE-E-EEecCCc----------ceeEeeccccCCCe-EEEe----c
Confidence 98888776543 2466778877765 2 1211111 12456677776553 3222 1
Q ss_pred CCcccccCCcceEEeccCCCCCCC-CceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
...+.+.+||. ... ....-.+.+..+..+.+.|.|..++... + +.+-++|+.++
T Consensus 173 -------sYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg----G-n~vkVWDl~~G 227 (487)
T KOG0310|consen 173 -------SYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG----G-NSVKVWDLTTG 227 (487)
T ss_pred -------CCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC----C-CeEEEEEecCC
Confidence 23345666665 211 1111123344566778888887776642 1 25666788754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.3 Score=39.71 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 165 DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 165 ~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
+| +++.|-.+..+.+...|+||+.|..+- . ..+--||...=..-.-.+ +|- .
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia~-g-------------ssV~Fwdaksf~~lKs~k------~P~-------n 226 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIAY-G-------------SSVKFWDAKSFGLLKSYK------MPC-------N 226 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEec-C-------------ceeEEeccccccceeecc------Ccc-------c
Confidence 55 344454444456889999999775542 1 234455554322211111 221 1
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
+.+.+.+|+.. ++.. ++ ....+|.+|. ..|+..... ...+.+..+.|||||..++.. .++
T Consensus 227 V~SASL~P~k~--~fVa----Gg-------ed~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG--SED 288 (334)
T KOG0278|consen 227 VESASLHPKKE--FFVA----GG-------EDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASG--SED 288 (334)
T ss_pred cccccccCCCc--eEEe----cC-------cceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeecc--CCC
Confidence 22345566653 3222 11 1124555664 334544443 234567889999999865554 345
Q ss_pred cceEEEEEeCC
Q 007620 322 SQTRTWLVCPG 332 (595)
Q Consensus 322 ~~~~L~~~d~~ 332 (595)
+..+||...+.
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 77789988654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.31 Score=47.12 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=43.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECC---CCceEecccCCCcc--ccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~--~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...++||||.+||++... .+..+||+.-+. .|.++.++...... ....+..+.|++++++++..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~-------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVED-------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEec-------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 58899999999999999975 345778877543 34244443322111 11235589999999977665
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.3 Score=44.35 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS 98 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg 98 (595)
..+....|||||+.||++.. . ...|+++.+|. ..+.|.... +.-+..++|+.|+
T Consensus 187 ~eV~DL~FS~dgk~lasig~---------d--~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGA---------D--SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDN 241 (398)
T ss_pred CccccceeCCCCcEEEEecC---------C--ceEEEEeccCchhhhcCCccc---chhhhhceecccC
Confidence 36889999999999999874 2 44455777774 333432221 1245688999776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=4.2 Score=43.31 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=42.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+.+|-|||..|...+ .+.|+++|+..|.. ..|-..++ -+-..+||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccC
Confidence 588999999999987754 37899999987764 33422232 35578999999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.5 Score=42.90 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=34.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
.+-.+.||.++= | ..+.. +....|| ++...+...++...+ .+...+|.|-+..
T Consensus 371 DILDlSWSKn~f-L-LSSSM-------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDr 423 (712)
T KOG0283|consen 371 DILDLSWSKNNF-L-LSSSM-------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDR 423 (712)
T ss_pred hheecccccCCe-e-Eeccc-------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCC
Confidence 366789998872 2 33333 4567787 555666666665554 5778999986554
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.19 Score=53.28 Aligned_cols=64 Identities=30% Similarity=0.488 Sum_probs=39.0
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchh--HHHhccCeEEEe
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRFAVLA 560 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~--q~la~~GY~Vl~ 560 (595)
..+.++-+||.+|..-||+|.+- .|+|||+.-.-.||. .- .+ .+..+...-. ++||++||+|+.
T Consensus 20 ~~v~V~MRDGvrL~~dIy~Pa~~-----g~~Pvll~~~~~Py~------k~-~~--~~~~~~~~~p~~~~~aa~GYavV~ 85 (563)
T COG2936 20 RDVMVPMRDGVRLAADIYRPAGA-----GPLPVLLSRTRLPYR------KR-NG--TFGPQLSALPQPAWFAAQGYAVVN 85 (563)
T ss_pred eeeeEEecCCeEEEEEEEccCCC-----CCCceeEEeeccccc------cc-cc--cCcchhhcccccceeecCceEEEE
Confidence 34566779999999999999863 255888874311111 10 01 1111111112 499999999997
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.7 Score=40.64 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~ 84 (595)
.+.|+||.. -+-++-++.+.. .+...+||+||+.|.-.+ + ...+-++|+..|.+ +++- ...
T Consensus 46 ~vvI~D~~T---~~iar~lsaH~~--pi~sl~WS~dgr~LltsS-~---------D~si~lwDl~~gs~l~rir-f~s-- 107 (405)
T KOG1273|consen 46 RVVIYDFDT---FRIARMLSAHVR--PITSLCWSRDGRKLLTSS-R---------DWSIKLWDLLKGSPLKRIR-FDS-- 107 (405)
T ss_pred cEEEEEccc---cchhhhhhcccc--ceeEEEecCCCCEeeeec-C---------CceeEEEeccCCCceeEEE-ccC--
Confidence 477888873 444555554333 488999999999876554 3 24455568877763 3331 121
Q ss_pred ccccccceEEecCCcEE
Q 007620 85 LNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l 101 (595)
.+-...|.|-.+..
T Consensus 108 ---pv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 108 ---PVWGAQWHPRKRNK 121 (405)
T ss_pred ---ccceeeeccccCCe
Confidence 34466777755433
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.31 Score=47.82 Aligned_cols=67 Identities=21% Similarity=0.420 Sum_probs=42.0
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHH-hccCeE
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIF-LARRFA 557 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~l-a~~GY~ 557 (595)
+.+.+++++. -|.++...||+|++++. + +.|+||+.|+. +.....+. ....+.| +..||+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~--~~P~vvllHG~--------------~~~~~~~~~~~~~~~la~~~g~~ 74 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAA-G--PVPVLWYLSGL--------------TCTHENFMIKAGAQRFAAEHGLA 74 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccC-C--CCCEEEEccCC--------------CCCccHHHhhhHHHHHHhhcCcE
Confidence 5566667655 56889999999998654 3 34999997642 21111111 1123444 456999
Q ss_pred EEeCCCCc
Q 007620 558 VLAGPSIP 565 (595)
Q Consensus 558 Vl~~~~~~ 565 (595)
|++ |+.+
T Consensus 75 Vv~-Pd~~ 81 (275)
T TIGR02821 75 LVA-PDTS 81 (275)
T ss_pred EEE-eCCC
Confidence 999 7764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.75 E-value=3 Score=42.82 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=70.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
..+-+.+||-.++++.+.... ..+.+||+.|.....-.... ...| .+.+.++|....
T Consensus 166 svRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~~~--HsAP---------~~gicfspsne~ 222 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHASEA--HSAP---------CRGICFSPSNEA 222 (673)
T ss_pred eEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchhhh--ccCC---------cCcceecCCccc
Confidence 445788999989888876543 37889999987654322110 0111 245777777664
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.++-+ .....|+++|. ...........+..++.++|+++|..|+... .+.+|+.+|+.+.
T Consensus 223 l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 223 LLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTYLCAGN----SKGELIAYDMRST 282 (673)
T ss_pred eEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceEEEeec----CCceEEEEecccC
Confidence 33322 33456777775 1111111112234467899999999887753 2348999999885
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=6.7 Score=37.26 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=71.8
Q ss_pred eeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 177 YTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 177 ~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
...++|+|- |. |+.+... ...|-+|+..+ ......+-+. .+.+...|..+|+|.|+
T Consensus 17 ~W~~awhp~~g~-ilAscg~------------Dk~vriw~~~~~~s~~ck~vld---------~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASCGT------------DKAVRIWSTSSGDSWTCKTVLD---------DGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEEEEeccCCce-EEEeecC------------CceEEEEecCCCCcEEEEEecc---------ccchheeeeeeecCCCc
Confidence 457889997 65 3333322 23577777763 2221111110 12234467899999998
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec---cccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL---HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l---~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
. |+-..+ .....++.- .+++...+ -..+..+..++||++|..|+.-+.. + .+|+...
T Consensus 75 ~-La~aSF------------D~t~~Iw~k---~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD--K--SVWiWe~ 134 (312)
T KOG0645|consen 75 Y-LASASF------------DATVVIWKK---EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD--K--SVWIWEI 134 (312)
T ss_pred E-EEEeec------------cceEEEeec---CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC--C--eEEEEEe
Confidence 3 443321 122222221 12233332 2334457789999999988775422 2 5666665
Q ss_pred CCCCCCcEEE--eec---ccccccCCCCCCCeeeCCCCCEEE
Q 007620 332 GSKDVAPRVL--FDR---VFENVYSDPGSPMMTRTSTGTNVI 368 (595)
Q Consensus 332 ~~~~~~~~~l--~~~---~~~~~~~~~~~~~~~~~~dg~~l~ 368 (595)
+.. .+..++ +.. ++.. +.|.|.-..|+
T Consensus 135 ded-dEfec~aVL~~HtqDVK~---------V~WHPt~dlL~ 166 (312)
T KOG0645|consen 135 DED-DEFECIAVLQEHTQDVKH---------VIWHPTEDLLF 166 (312)
T ss_pred cCC-CcEEEEeeeccccccccE---------EEEcCCcceeE
Confidence 543 243443 222 3333 77887654443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.7 Score=38.12 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=39.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..-+|++|++.||...+ ..+|.++...+.. ...+-...+. +..+..+.|+|.+.+|+-.
T Consensus 12 pitchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEc
Confidence 3667799999999999764 3566666665655 3333222221 2256679999999877654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.41 E-value=2.6 Score=42.25 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=35.1
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..-.++++||..||-... ++.-.+| +..... +.+.... ..+.+.++.|||||+.|+..
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~--~~Ps~~-t~l~e~~---~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVW--EWPSML-TILEEIA---HHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEE--ecCcch-hhhhhHh---hcCccccceeCCCCcEEEEe
Confidence 456788888888877543 3444455 422221 1221111 12367899999999999886
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.9 Score=44.70 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=54.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCC-CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
++.|.|+.+ .++++.+.. ........|||||..||-.+. .++-|-|..+..|+ +++....+.
T Consensus 154 dV~l~d~~n------l~~v~~I~aH~~~lAalafs~~G~llATASe---------KGTVIRVf~v~~G~--kl~eFRRG~ 216 (391)
T KOG2110|consen 154 DVVLFDTIN------LQPVNTINAHKGPLAALAFSPDGTLLATASE---------KGTVIRVFSVPEGQ--KLYEFRRGT 216 (391)
T ss_pred eEEEEEccc------ceeeeEEEecCCceeEEEECCCCCEEEEecc---------CceEEEEEEcCCcc--EeeeeeCCc
Confidence 566776652 223322222 225778899999999988763 45888888988776 343334433
Q ss_pred ccccccceEEecCCcEEEEEe
Q 007620 85 LNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~ 105 (595)
....+-++.|+||++.|..+.
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred eeeEEEEEEECCCCCeEEEec
Confidence 222345899999999888763
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.4 Score=47.03 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC---CchhHHHhccCeEEE
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT---PTSSLIFLARRFAVL 559 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~---~~~~q~la~~GY~Vl 559 (595)
|.+.|. .+|.+|.|+|+.|.+-+ + |.||++| ||+..+...+ ......|+++||.|+
T Consensus 3 ~~~~~~-~~~~~l~g~~~~p~~~~--~----~~vv~i~--------------gg~~~~~g~~~~~~~la~~l~~~G~~v~ 61 (274)
T TIGR03100 3 RALTFS-CEGETLVGVLHIPGASH--T----TGVLIVV--------------GGPQYRVGSHRQFVLLARRLAEAGFPVL 61 (274)
T ss_pred eeEEEE-cCCcEEEEEEEcCCCCC--C----CeEEEEe--------------CCccccCCchhHHHHHHHHHHHCCCEEE
Confidence 457776 47899999999997521 1 3444433 2222111111 112468899999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. +|.+..|+
T Consensus 62 ~-~Dl~G~G~ 70 (274)
T TIGR03100 62 R-FDYRGMGD 70 (274)
T ss_pred E-eCCCCCCC
Confidence 9 99888775
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.24 Score=48.16 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCC-CCcccCCCCchhHHHhccCeEEEeCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS-PNEFSGMTPTSSLIFLARRFAVLAGP 562 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~gg-p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (595)
.|.+++..|. +.++++.|.+-. +.|+||++||- ++ ...+..........|+++||.|+. +
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~-----~~~~VlllHG~------------g~~~~~~~~~~~~la~~La~~Gy~Vl~-~ 62 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVG-----PRGVVIYLPPF------------AEEMNKSRRMVALQARAFAAGGFGVLQ-I 62 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCC-----CceEEEEECCC------------cccccchhHHHHHHHHHHHHCCCEEEE-E
Confidence 4667776765 678888887521 33889988741 11 001111101123588899999999 9
Q ss_pred CCceeecC
Q 007620 563 SIPIIGEG 570 (595)
Q Consensus 563 ~~~~~~~~ 570 (595)
|.|..|+-
T Consensus 63 Dl~G~G~S 70 (266)
T TIGR03101 63 DLYGCGDS 70 (266)
T ss_pred CCCCCCCC
Confidence 99988753
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=92.31 E-value=11 Score=36.15 Aligned_cols=67 Identities=9% Similarity=0.171 Sum_probs=38.4
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
++.|.++.. ..+...|.||.+.|+.+.. ....|+.+++++.-.+++.- ... +....+++..+++.
T Consensus 14 ~~~l~g~~~--e~SGLTy~pd~~tLfaV~d---------~~~~i~els~~G~vlr~i~l-~g~---~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 14 AKPLPGILD--ELSGLTYNPDTGTLFAVQD---------EPGEIYELSLDGKVLRRIPL-DGF---GDYEGITYLGNGRY 78 (248)
T ss_dssp EEE-TT--S---EEEEEEETTTTEEEEEET---------TTTEEEEEETT--EEEEEE--SS----SSEEEEEE-STTEE
T ss_pred eeECCCccC--CccccEEcCCCCeEEEEEC---------CCCEEEEEcCCCCEEEEEeC-CCC---CCceeEEEECCCEE
Confidence 345544333 3899999999999877763 45789999986444455432 210 13456777777754
Q ss_pred EE
Q 007620 101 LI 102 (595)
Q Consensus 101 l~ 102 (595)
++
T Consensus 79 vl 80 (248)
T PF06977_consen 79 VL 80 (248)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.23 Score=46.63 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=32.5
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
++||+|.+++ +++ |+||+.|+... .+..+... +.+.+++...||+|+. |+.+..+
T Consensus 1 ~~ly~P~~~~--~~~--P~vv~lHG~~~-----------~~~~~~~~-~~~~~~a~~~g~~Vv~-Pd~~g~~ 55 (212)
T TIGR01840 1 MYVYVPAGLT--GPR--ALVLALHGCGQ-----------TASAYVID-WGWKAAADRYGFVLVA-PEQTSYN 55 (212)
T ss_pred CEEEcCCCCC--CCC--CEEEEeCCCCC-----------CHHHHhhh-cChHHHHHhCCeEEEe-cCCcCcc
Confidence 4799999864 334 99999875311 11112110 1133566667999999 7766543
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.21 Score=48.99 Aligned_cols=28 Identities=43% Similarity=0.795 Sum_probs=20.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
||.+|.+.||+| +.+.++ |+|+||..+|
T Consensus 1 DGv~L~adv~~P-~~~~~~--~~P~il~~tp 28 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGG--PFPVILTRTP 28 (272)
T ss_dssp TS-EEEEEEEEE---TTSS--SEEEEEEEES
T ss_pred CCCEEEEEEEec-CCCCCC--cccEEEEccC
Confidence 899999999999 555444 5699998654
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.55 Score=47.91 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=78.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
||.|+||.+ .-..|++.+++.+ .+...+|+||.+|. +.. -.+.|-.+|+..|...+-.++..
T Consensus 532 nI~vwDLhn---q~~VrqfqGhtDG--ascIdis~dGtklW-TGG---------lDntvRcWDlregrqlqqhdF~S--- 593 (705)
T KOG0639|consen 532 NIAVWDLHN---QTLVRQFQGHTDG--ASCIDISKDGTKLW-TGG---------LDNTVRCWDLREGRQLQQHDFSS--- 593 (705)
T ss_pred cEEEEEccc---ceeeecccCCCCC--ceeEEecCCCceee-cCC---------Cccceeehhhhhhhhhhhhhhhh---
Confidence 789999995 5577889887776 88999999999874 332 13456666887664322222222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
.+-++...|.+.+|++.+. .++++++..+
T Consensus 594 --QIfSLg~cP~~dWlavGMe-------------------------------------------------ns~vevlh~s 622 (705)
T KOG0639|consen 594 --QIFSLGYCPTGDWLAVGME-------------------------------------------------NSNVEVLHTS 622 (705)
T ss_pred --hheecccCCCccceeeecc-------------------------------------------------cCcEEEEecC
Confidence 2446778899999888421 2455666665
Q ss_pred C-CeeecCCCC-eeeeeEECCCCCeEEEEE
Q 007620 166 G-TAKDFGTPA-VYTAVEPSPDQKYVLITS 193 (595)
Q Consensus 166 g-~~~~lt~~~-~~~~~~~SpDg~~l~~~~ 193 (595)
+ +.-+|...+ -+.++.|++=|++.+-+.
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecC
Confidence 5 444565433 345889999999876553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.06 E-value=7.2 Score=42.14 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=38.2
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+||++|+.|+-.. .+.|-.+|++++... +..... .....+..+.-+||++.|+..
T Consensus 25 ~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~-ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSN-EDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred eeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCc-cchhhhheeeecCCccEEEEe
Confidence 89999999876553 356888899998864 322211 111235688899998887775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.83 Score=49.62 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|.++|.-+.+..+.+.... ..+.++.+||||++|+....+
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~----nritd~~FS~DgrWlisasmD--------------------------------- 597 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHG----NRITDMTFSPDGRWLISASMD--------------------------------- 597 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccc----cceeeeEeCCCCcEEEEeecC---------------------------------
Confidence 4678888887766555443221 157799999999999886321
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCeee-cCCCCeeeeeEECCCCCeEEEEEcc
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt~~~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+.|.++|+ +|.... +.-+.....+++||+|.+|+.+...
T Consensus 598 ----------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 598 ----------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ----------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 23455565 553321 2222223578999999999988653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.73 E-value=13 Score=35.86 Aligned_cols=134 Identities=12% Similarity=0.040 Sum_probs=64.9
Q ss_pred eEEEEcC-CCCeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 158 QLVLGSL-DGTAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 158 ~l~~~d~-~g~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
++-++|+ ..+..++. ..-..+.+.|..++..+.....+ .+|.+||+..+...-+...
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId-------------n~ikvWd~r~~d~~~~lsG-------- 214 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID-------------NDIKVWDLRKNDGLYTLSG-------- 214 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccceeecccc-------------CceeeeccccCcceEEeec--------
Confidence 4445555 22322222 22234688898888887655432 3677888754333222111
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eecccc-----CccccceeecCC
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-----DLRFRSVSWCDD 309 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~-----~~~~~~~~wspD 309 (595)
++.-...+..+++|...+- ..+...+.+||.-|+..++. ..+... +-....-+|||+
T Consensus 215 ----h~DtIt~lsls~~gs~lls-------------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 215 ----HADTITGLSLSRYGSFLLS-------------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred ----ccCceeeEEeccCCCcccc-------------ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 0011223555666653110 12334555556545543333 112211 112345689999
Q ss_pred CcEEEEEEeecccceEEEEEeCCC
Q 007620 310 SLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 310 g~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+..+.+.... + .+|+.|..+
T Consensus 278 ~~~i~ags~d--r--~vyvwd~~~ 297 (338)
T KOG0265|consen 278 GTKITAGSAD--R--FVYVWDTTS 297 (338)
T ss_pred CCcccccccc--c--eEEEeeccc
Confidence 8765443321 1 577777655
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.2 Score=48.20 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=39.6
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
.++.....+..+++.|.+ ..++ +.|+||++|+. +..-. .+....+.|+++||.|+. ++.+.
T Consensus 4 ~~~~~~~~~~~~~~~p~~-~~~~--~~p~vv~~HG~--------------~~~~~-~~~~~~~~l~~~G~~v~~-~d~~g 64 (249)
T PRK10566 4 IETRELAGIEVLHAFPAG-QRDT--PLPTVFFYHGF--------------TSSKL-VYSYFAVALAQAGFRVIM-PDAPM 64 (249)
T ss_pred EEEEEecCcceEEEcCCC-CCCC--CCCEEEEeCCC--------------Ccccc-hHHHHHHHHHhCCCEEEE-ecCCc
Confidence 444444566678888975 2223 34999997742 11100 111235799999999999 88877
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 65 ~G~ 67 (249)
T PRK10566 65 HGA 67 (249)
T ss_pred ccc
Confidence 654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.55 E-value=6.5 Score=38.27 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=32.1
Q ss_pred ccccceeecCCC-cEEEEEEeecccceEEEEEeCCCCCCCcEEE-e--ecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 299 LRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVL-F--DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 299 ~~~~~~~wspDg-~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l-~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+-++.++++|-. +.++..... ....||.- ++ ..+-.+ . ...+.. ++|.+||..++..+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~--q~~giy~~--~~--~~pl~llggh~gGvTh---------L~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYG--QRVGIYND--DG--RRPLQLLGGHGGGVTH---------LQWCEDGNKLFSGAR 270 (406)
T ss_pred ceeeeeeccCCCCcceeeeccc--ceeeeEec--CC--CCceeeecccCCCeee---------EEeccCcCeeccccc
Confidence 346778889854 345443321 22345443 33 223333 2 223444 899999998876654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.92 Score=48.22 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=45.2
Q ss_pred CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCccccccccceEEecCCcEEEEEec
Q 007620 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
+..+.....||+|+.||-...... .....|++++...-...+ |-...- .+..+.|||||++|+-...
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeec
Confidence 335778899999998877654322 345678888876543333 322221 4679999999999887643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.41 E-value=2 Score=42.30 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~ 84 (595)
+|-|+|.. ++...++++ .+...+...+|+|--+.|.-+... ...|.++|+..+.+. .|+- .-
T Consensus 168 ~i~IWD~~---R~~Pv~sms--wG~Dti~svkfNpvETsILas~~s---------DrsIvLyD~R~~~Pl~KVi~-~m-- 230 (433)
T KOG0268|consen 168 QIDIWDEQ---RDNPVSSMS--WGADSISSVKFNPVETSILASCAS---------DRSIVLYDLRQASPLKKVIL-TM-- 230 (433)
T ss_pred eeeecccc---cCCccceee--cCCCceeEEecCCCcchheeeecc---------CCceEEEecccCCccceeee-ec--
Confidence 45666666 355555555 333357888999988877766532 356888899877642 2211 11
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
.-..+.|+| +...|+
T Consensus 231 ---RTN~IswnP--eafnF~ 245 (433)
T KOG0268|consen 231 ---RTNTICWNP--EAFNFV 245 (433)
T ss_pred ---cccceecCc--ccccee
Confidence 235789999 445554
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.41 Score=48.87 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=44.1
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeEEEe
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA 560 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~Vl~ 560 (595)
.+...+...||.+|.+....|.+- + +.|+||++|+- ... ...++ ...+.|+++||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~---~--~~~~iv~lHG~--------------~~~-~~~~~~~~~~~l~~~g~~v~~ 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS---R--PKAAVCFCHGY--------------GDT-CTFFFEGIARKIASSGYGVFA 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC---C--CCeEEEEECCC--------------CCc-cchHHHHHHHHHHhCCCEEEE
Confidence 344456678999999999998742 1 33888887631 110 01111 124678889999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
+|.|..|.
T Consensus 121 -~D~~G~G~ 128 (349)
T PLN02385 121 -MDYPGFGL 128 (349)
T ss_pred -ecCCCCCC
Confidence 99888774
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.29 Score=47.05 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=38.1
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.++. .+|...++|||.|++.+.++ |+||+.|+... .++++-| .. .+..+....||+|+.
T Consensus 38 ~s~~-~~g~~r~y~l~vP~g~~~~a----pLvv~LHG~~~---sgag~~~--------~s-g~d~lAd~~gFlV~y 96 (312)
T COG3509 38 ASFD-VNGLKRSYRLYVPPGLPSGA----PLVVVLHGSGG---SGAGQLH--------GT-GWDALADREGFLVAY 96 (312)
T ss_pred cccc-cCCCccceEEEcCCCCCCCC----CEEEEEecCCC---ChHHhhc--------cc-chhhhhcccCcEEEC
Confidence 4554 58899999999999987643 88888886411 1111211 11 112466666999999
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=18 Score=35.96 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=38.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+...+.+|+.+ ++.+... + .--|++++.+|+ +-.+|..++ .+....||-||.+|+-
T Consensus 66 svFavsl~P~~~-l~aTGGg-------D--D~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 66 SVFAVSLHPNNN-LVATGGG-------D--DLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLAT 123 (399)
T ss_pred ceEEEEeCCCCc-eEEecCC-------C--ceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEe
Confidence 577788999555 4444321 2 334555777776 667776665 6789999999998765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.2 Score=45.76 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=52.0
Q ss_pred eeeeEEE-ecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 4 FTGIGIH-RLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~-~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.++.|+. |-. +....++. ..+...+..++||||..||.-+. ++.--||+++..+.+-.++-....
T Consensus 426 ~~G~w~V~d~e----~~~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 426 ATGRWFVLDTE----TQDLVTIH--TDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred ccceEEEEecc----cceeEEEE--ecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeeecC
Confidence 3455554 554 44444554 34567888999999999998764 344556666655555555532222
Q ss_pred ccccccccceEEecCCcEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~ 103 (595)
..+..+.||+|++.|.-
T Consensus 492 ----s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 492 ----SPITHLDWSSDSQFLVS 508 (626)
T ss_pred ----ceeEEeeecCCCceEEe
Confidence 25668899999997654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.15 E-value=41 Score=38.98 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.7
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..|.++|+++.....+..... ++....||||++.+++.
T Consensus 90 G~iilvd~et~~~eivg~vd~-----GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 90 GDIILVDPETLELEIVGNVDN-----GISAASWSPDEELLALI 127 (1265)
T ss_pred CcEEEEcccccceeeeeeccC-----ceEEEeecCCCcEEEEE
Confidence 456666777666666644443 68899999999998886
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.4 Score=48.74 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=45.4
Q ss_pred cccceEEccCCCEEEEEEec-ccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
.++.+..+|+|..++|+... +... ....+.+|+.+.+. .+.++... ....+.|+|||+.++|..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~~--~~~~~~~~------~~~~~~~spdg~~~~~~~ 78 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLK--PLYKSSLWVSDGKT--VRLLTFGG------GVSELRWSPDGSVLAFVS 78 (620)
T ss_pred cccCcccCCCCceeEEeeccccccc--cccccceEEEeccc--ccccccCC------cccccccCCCCCEEEEEe
Confidence 57889999999999998874 1111 13467899977654 33333222 467899999999999973
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.95 E-value=13 Score=39.77 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+.+.|+.|++++ .-+.+.+...+... ..+...|+-|++.+.+++. ...+|.++++++..-+.+-.....
T Consensus 403 ~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~~~~ 472 (691)
T KOG2048|consen 403 SRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSIQSQ 472 (691)
T ss_pred cceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhccccc
Confidence 466778888644 33444444333322 4677899999998888762 246777777776543333222111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.....++.+.-|+||.+|+... ..++|++++
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~-------------------------------------------------t~g~I~v~n 503 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAIS-------------------------------------------------TRGQIFVYN 503 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEe-------------------------------------------------ccceEEEEE
Confidence 1112466888999999988852 135788889
Q ss_pred CCC-CeeecCC--CCeeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 164 LDG-TAKDFGT--PAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 164 ~~g-~~~~lt~--~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+.+ +-+.|.. +...+...++|. -..|++...+ .+++-+|++.
T Consensus 504 l~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~ 549 (691)
T KOG2048|consen 504 LETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEA 549 (691)
T ss_pred cccceeecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecch
Confidence 844 5555442 234567788865 4566666432 3677777743
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.4 Score=44.30 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=39.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~Vl 559 (595)
..+.++++..+| +|...+|+|.. + +.|+|||+|+|-| +.|++..+ ......||. .||.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGGF--------ILGNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCcc--------cCCCchhh----hHHHHHHHHHcCCEEE
Confidence 467788888888 59999999952 1 2399999875411 12222111 112456776 599999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 117 ~ 117 (318)
T PRK10162 117 G 117 (318)
T ss_pred E
Confidence 8
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=35 Score=37.10 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCCceeeecCCCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
++...++.+.... .....+..|+||+.+|++.. ....||+... ++..+.+.... ....+.|.
T Consensus 328 ~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~---------~~~~l~~~~~-g~~~~~~~~g~------~Lt~PS~d 391 (573)
T PRK13614 328 NGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNG---------SRTTLYTVSP-GQPARALTSGS------TLTRPSFS 391 (573)
T ss_pred CCCcccCCCccCcCcccccceeecCCCceEEEecC---------CCcEEEEecC-CCcceeeecCC------CccCCccc
Confidence 4444555443321 14567899999999999842 2368888776 44555554322 35677888
Q ss_pred cCC
Q 007620 96 NNS 98 (595)
Q Consensus 96 pdg 98 (595)
++|
T Consensus 392 ~~g 394 (573)
T PRK13614 392 PQD 394 (573)
T ss_pred CCC
Confidence 777
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.1 Score=48.73 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
|.+.|+.. -.-.|++.+ .+..+....|||||++|+-.+. ...|.++|+.+|...-......
T Consensus 558 I~vvD~~t---~kvvR~f~g--h~nritd~~FS~DgrWlisasm----------D~tIr~wDlpt~~lID~~~vd~---- 618 (910)
T KOG1539|consen 558 IRVVDVVT---RKVVREFWG--HGNRITDMTFSPDGRWLISASM----------DSTIRTWDLPTGTLIDGLLVDS---- 618 (910)
T ss_pred EEEEEchh---hhhhHHhhc--cccceeeeEeCCCCcEEEEeec----------CCcEEEEeccCcceeeeEecCC----
Confidence 44556651 223344443 3336899999999999987764 2567777998887443322222
Q ss_pred ccccceEEecCCcEEEEEe
Q 007620 87 AVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~~ 105 (595)
...++.+||+|..|+-+.
T Consensus 619 -~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 619 -PCTSLSFSPNGDFLATVH 636 (910)
T ss_pred -cceeeEECCCCCEEEEEE
Confidence 345889999999998863
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.31 E-value=37 Score=37.13 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=73.0
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
....+++||||++|++.-.+.. -.+|-+| +=+... |+.. .+| +..+..|||++
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnT-----------VkVyflD--tlKFflsLYGH----kLP---------V~smDIS~DSk 563 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNT-----------VKVYFLD--TLKFFLSLYGH----KLP---------VLSMDISPDSK 563 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCe-----------EEEEEec--ceeeeeeeccc----ccc---------eeEEeccCCcC
Confidence 3457899999999999875431 2333333 222111 2211 122 24577789987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+... .+.+ ..-++|-+| - |+- +.++..+-++..+.|.|+... .+... +++ .+-.+|.+.
T Consensus 564 --livT---gSAD------KnVKiWGLd----F-GDCHKS~fAHdDSvm~V~F~P~~~~-FFt~g-KD~--kvKqWDg~k 623 (888)
T KOG0306|consen 564 --LIVT---GSAD------KNVKIWGLD----F-GDCHKSFFAHDDSVMSVQFLPKTHL-FFTCG-KDG--KVKQWDGEK 623 (888)
T ss_pred --eEEe---ccCC------CceEEeccc----c-chhhhhhhcccCceeEEEEccccee-EEEec-Ccc--eEEeechhh
Confidence 2221 1111 111344444 2 343 346666667778889996543 33221 122 455555443
Q ss_pred CCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007620 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (595)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~ 382 (595)
- +..+.++....+.. .+..+|+|.+++-..++ ...++|
T Consensus 624 F--e~iq~L~~H~~ev~------cLav~~~G~~vvs~shD---~sIRlw 661 (888)
T KOG0306|consen 624 F--EEIQKLDGHHSEVW------CLAVSPNGSFVVSSSHD---KSIRLW 661 (888)
T ss_pred h--hhheeeccchheee------eeEEcCCCCeEEeccCC---ceeEee
Confidence 1 11111232222211 15678889877655543 245555
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.3 Score=42.57 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
.-|.+|...||.|.+++++||| .|+|||.|+
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky-~PLvlfLHg 199 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKY-YPLVLFLHG 199 (387)
T ss_pred ccCceeeEEEecccccCCCCcc-ccEEEEEec
Confidence 3678999999999999999987 588888775
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.93 E-value=8.7 Score=38.62 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=68.7
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
.-..+|...|.-|. ++ +...-||.++.++|.+..++...++..-.-..++..++ ...|+|+-...+-..
T Consensus 117 PLGl~f~~~ggdL~-Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 117 PLGIRFDKKGGDLY-VA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred cceEEeccCCCeEE-EE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccch
Confidence 44557777775443 33 34677899999999988887665432111123566666 334677621110000
Q ss_pred CCccccCCCCeeeecCcccccccccc-cccccCcCCccceEEeecceEEEEcCCC-CeeecCCCC-eeeeeEECCCCCeE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMT-DNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
+.+ -.+ ++.....+|+.+|... +.+.|.+.- +...++.|||++++
T Consensus 186 -----------------------rd~~~a~---------l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 186 -----------------------RDFVFAA---------LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred -----------------------hheEEee---------ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 000 000 0111356788899844 566665553 33588999999999
Q ss_pred EEEEcc
Q 007620 190 LITSMH 195 (595)
Q Consensus 190 ~~~~~~ 195 (595)
+|+...
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 999753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.3 Score=44.25 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=42.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+..+|||||+++|--+. ...||++++.+|+...+..... .+..+.++.|+|-|+.|+-.
T Consensus 389 DwtrvvfSpd~~YvaAGS~----------dgsv~iW~v~tgKlE~~l~~s~--s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSA----------DGSVYIWSVFTGKLEKVLSLST--SNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccceeEECCCCceeeeccC----------CCcEEEEEccCceEEEEeccCC--CCcceEEEEEcCCCchhhcc
Confidence 3567899999999887543 3568888999998644433221 12246789999999976654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.39 E-value=25 Score=38.26 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEE--ecCCcEEEEE
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFT 104 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W--spdg~~l~~~ 104 (595)
||++| |+-. +....|-+++++.-+..+|+..+... ++...++ .|+-.+++..
T Consensus 140 dGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~ 193 (635)
T PRK02888 140 DGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCN 193 (635)
T ss_pred ceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeC
Confidence 67665 5432 35678999999887777777665422 2233333 3676666553
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.89 Score=34.93 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=34.9
Q ss_pred CcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
|.+|....+.|++- +..+|+.+|+- .-|.+ .| -..++.|+++||+|+. .|...-|
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~---------~eh~~--ry----~~~a~~L~~~G~~V~~-~D~rGhG 55 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGF---------GEHSG--RY----AHLAEFLAEQGYAVFA-YDHRGHG 55 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCc---------HHHHH--HH----HHHHHHHHhCCCEEEE-ECCCcCC
Confidence 67899999999852 22777776531 00100 11 1236899999999998 5555544
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=87.44 E-value=20 Score=36.43 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=36.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC--ceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g--~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|+|--+.|.-.+. ....|.+.|+.++ ++....... .+.+..++|.|-+..|+-+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~---------dd~~L~iwD~R~~~~~~~~~~~ah----~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVG---------DDGKLMIWDTRSNTSKPSHSVKAH----SAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred ceehhhccccchhhheeec---------CCCeEEEEEcCCCCCCCccccccc----CCceeEEEeCCCCCceEEe
Confidence 5778889996665543332 2467888898853 322222111 2256788999887765554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=39 Score=35.15 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=34.9
Q ss_pred CccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe---ecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
...++.+.+||||..|+..+. +...-||+++.++ .....+- ...... +-||.|++++.-.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~--d~~iyiy~Vs~~g--~~y~r~~k~~gs~ith---------LDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSH--DNHIYIYRVSANG--RKYSRVGKCSGSPITH---------LDWSSDSQFLVSN 509 (626)
T ss_pred CCceEEEEEcCCCCEEEEecC--CCeEEEEEECCCC--cEEEEeeeecCceeEE---------eeecCCCceEEec
Confidence 455778999999998887652 2333455555544 2222221 111122 7899999976543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.25 E-value=9.3 Score=37.81 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=24.4
Q ss_pred ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
|...+..+....|+|.|+.|+.-. +++ .|.++|+..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~Sca--DDk--tlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCA--DDK--TLRVWDLKN 365 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEe--cCC--cEEEEEecc
Confidence 335566788899999999877653 233 455667665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.12 E-value=16 Score=35.50 Aligned_cols=68 Identities=9% Similarity=0.147 Sum_probs=41.5
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
.++++++... ..+...|+||.+.|.-+.+ ...+|.-++..|.-.+++.- ... .....+.|.-+|+
T Consensus 77 ~akpi~g~~~--nvS~LTynp~~rtLFav~n---------~p~~iVElt~~GdlirtiPL-~g~---~DpE~Ieyig~n~ 141 (316)
T COG3204 77 DAKPILGETA--NVSSLTYNPDTRTLFAVTN---------KPAAIVELTKEGDLIRTIPL-TGF---SDPETIEYIGGNQ 141 (316)
T ss_pred eccccccccc--cccceeeCCCcceEEEecC---------CCceEEEEecCCceEEEecc-ccc---CChhHeEEecCCE
Confidence 3455665444 4999999999998766553 34777778876655555521 110 0234677777776
Q ss_pred EEE
Q 007620 100 LLI 102 (595)
Q Consensus 100 ~l~ 102 (595)
.++
T Consensus 142 fvi 144 (316)
T COG3204 142 FVI 144 (316)
T ss_pred EEE
Confidence 433
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.2 Score=43.64 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=41.3
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
|.+.||..|.+.++.|.+ . +.|+|+++|+- ... ...+....+.|+.+||.|+. +|.|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~--~~~~v~llHG~--------------~~~-~~~~~~~~~~l~~~g~~via-~D~~G 62 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----Y--PKALVFISHGA--------------GEH-SGRYEELAENISSLGILVFS-HDHIG 62 (276)
T ss_pred eecCCCCEEEEEeccCCC----C--CCEEEEEeCCC--------------ccc-cchHHHHHHHHHhCCCEEEE-ccCCC
Confidence 456799999999998852 1 22788876631 110 11111235789999999999 99998
Q ss_pred eec
Q 007620 567 IGE 569 (595)
Q Consensus 567 ~~~ 569 (595)
.|.
T Consensus 63 ~G~ 65 (276)
T PHA02857 63 HGR 65 (276)
T ss_pred CCC
Confidence 875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.60 E-value=38 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=52.1
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+..+.|.|--.-+++++.- ...+.+||+.+|+... |. .|. -..+++|+.||..
T Consensus 134 Vg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hpd-------------~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HPD-------------MVYSMSFNRDGSL 187 (472)
T ss_pred EEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CCC-------------eEEEEEeccCCce
Confidence 4567899987777766542 2378899998776433 32 221 1235788888873
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcE
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~ 312 (595)
++-. . ....+.++|. -+| +...-. ........+.|..+|..
T Consensus 188 -l~Tt-c-----------kDKkvRv~dp--r~~-~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 188 -LCTT-C-----------KDKKVRVIDP--RRG-TVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred -eeee-c-----------ccceeEEEcC--CCC-cEeeecccccCCCcceeEEeccCce
Confidence 2221 1 1224566663 332 332211 12234556788888873
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.42 Score=44.97 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
|+++|..|.+- + |.|+||.+|. +. ++..........||++||.|+.
T Consensus 1 ~~ay~~~P~~~--~---~~~~Vvv~~d-----------~~----G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 1 IDAYVARPEGG--G---PRPAVVVIHD-----------IF----GLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEEETTS--S---SEEEEEEE-B-----------TT----BS-HHHHHHHHHHHHTT-EEEE
T ss_pred CeEEEEeCCCC--C---CCCEEEEEcC-----------CC----CCchHHHHHHHHHHhcCCCEEe
Confidence 68999999863 1 3499998763 11 1111111235789999999999
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.44 E-value=5.9 Score=44.89 Aligned_cols=143 Identities=16% Similarity=0.260 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCeeecCC-----CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCC
Q 007620 156 TAQLVLGSLDGTAKDFGT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPP 229 (595)
Q Consensus 156 ~~~l~~~d~~g~~~~lt~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~ 229 (595)
.+.|+++|+..-..+.+. .+.+..++|.-.-.+|+.+.... ....+||+..++ +-.+.+.+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCC
Confidence 457888888542222222 12345677877777777665432 367789987552 233333221
Q ss_pred CccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCC
Q 007620 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspD 309 (595)
. .....+.|.||....|+.. ..|.. .-.+-+||+ -+.....+.+....-.+..+.|++.
T Consensus 206 ~-----------~~~S~l~WhP~~aTql~~A-s~dd~--------~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 206 R-----------MHCSVLAWHPDHATQLLVA-SGDDS--------APVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred c-----------cceeeeeeCCCCceeeeee-cCCCC--------CceeEeecc-cccCCchhhhcccccceeeeccCCC
Confidence 0 0123589999998766543 21111 123445564 2332233344444555778899987
Q ss_pred CcEEEEEEeecccceEEEEEeCCCC
Q 007620 310 SLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 310 g~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
+..++..... ..+++..+..++
T Consensus 265 D~~lllSsgk---D~~ii~wN~~tg 286 (1049)
T KOG0307|consen 265 DPRLLLSSGK---DNRIICWNPNTG 286 (1049)
T ss_pred CchhhhcccC---CCCeeEecCCCc
Confidence 6544333321 236888888874
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=86.05 E-value=1.2 Score=46.32 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccC-eEEEe
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA 560 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~G-Y~Vl~ 560 (595)
+.|.+-|. ++.|. .+.+ ++||+||+|+|-|..|. .. ......+.||++| .+|+.
T Consensus 76 sEDCL~LN--IwaP~--~~a~--~~PVmV~IHGG~y~~Gs--------~s----~~~ydgs~La~~g~vVvVS 130 (491)
T COG2272 76 SEDCLYLN--IWAPE--VPAE--KLPVMVYIHGGGYIMGS--------GS----EPLYDGSALAARGDVVVVS 130 (491)
T ss_pred cccceeEE--eeccC--CCCC--CCcEEEEEeccccccCC--------Cc----ccccChHHHHhcCCEEEEE
Confidence 34655554 45677 2222 57999999987664321 11 1112347999999 88876
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.99 E-value=31 Score=32.54 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..+-|.-..+.|+-++.. ..+-+||..++.. +.|.. + ..+.++..++||+
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd-------------~tVRLWD~rTgt~v~sL~~-~-------------s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADD-------------KTVRLWDHRTGTEVQSLEF-N-------------SPVTSLEVSQDGR 197 (334)
T ss_pred cceeEEEeccCceEEeeccC-------------CceEEEEeccCcEEEEEec-C-------------CCCcceeeccCCC
Confidence 44566676666776655332 3677899775543 44421 1 1134567788887
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecccceEEEEEeCC
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
. |... + ...+..||+ . ....|- +.+..+..+..+|+...++... ....+|.+|..
T Consensus 198 i-lTia---~----------gssV~Fwda---k--sf~~lKs~k~P~nV~SASL~P~k~~fVaGg----ed~~~~kfDy~ 254 (334)
T KOG0278|consen 198 I-LTIA---Y----------GSSVKFWDA---K--SFGLLKSYKMPCNVESASLHPKKEFFVAGG----EDFKVYKFDYN 254 (334)
T ss_pred E-EEEe---c----------CceeEEecc---c--cccceeeccCccccccccccCCCceEEecC----cceEEEEEecc
Confidence 3 2221 1 122333454 1 111121 2345567788889876565542 12378899998
Q ss_pred CCCCCcEEEe-ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEe
Q 007620 333 SKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (595)
Q Consensus 333 ~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~ 384 (595)
++ +....+ .....- ...++++|||.. |..-+. |...+||.+
T Consensus 255 Tg--eEi~~~nkgh~gp------VhcVrFSPdGE~-yAsGSE--DGTirlWQt 296 (334)
T KOG0278|consen 255 TG--EEIGSYNKGHFGP------VHCVRFSPDGEL-YASGSE--DGTIRLWQT 296 (334)
T ss_pred CC--ceeeecccCCCCc------eEEEEECCCCce-eeccCC--CceEEEEEe
Confidence 85 333332 211110 023789999974 433322 234566644
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.66 E-value=52 Score=33.94 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=74.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......++|||+.++..-.. .....+.++|..+++..+...... .......+|+|+.++....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~-----~P~~~a~~p~g~~vyv~~~----- 179 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGN-----TPTGVAVDPDGNKVYVTNS----- 179 (381)
T ss_pred CCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCC-----CcceEEECCCCCeEEEEec-----
Confidence 56778999999987554331 135789999988877544421111 1146788899988777520
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Ceee------cCCCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKD------FGTPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~------lt~~~~~~~~~~Sp 184 (595)
....|.++|.++ ...+ +........+.++|
T Consensus 180 -------------------------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 180 -------------------------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred -------------------------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 023445555533 2222 11122234689999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
||+++++...... ...+.++|..++.....
T Consensus 217 ~g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 217 DGNRVYVANDGSG----------SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCEEEEEeccCC----------CceEEEEeCCCceEEEe
Confidence 9999887754321 13677888877665543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=11 Score=40.81 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=45.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+.|+||.++|++... +++.+|++.-+ ..|+++.|+..-.........++.|..++++++..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQ-------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred eeEEEEECCCccEEEEEEEe-------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 58899999999999999865 34566776432 45777888654221111235589999999966654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=84.31 E-value=26 Score=37.18 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=47.0
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecc-cccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~-~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+||-|+.+. +++...|...-.....-...||-.-.+..++.... ..++ +..-+-.+++...++.+++.- ...
T Consensus 184 aNl~L~~~~----~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g--~~~~d~ciYE~~r~klqrvsv-tsi 256 (545)
T PF11768_consen 184 ANLHLLSCS----GGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG--EPSADSCIYECSRNKLQRVSV-TSI 256 (545)
T ss_pred ccEEEEEec----CCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC--CceeEEEEEEeecCceeEEEE-EEE
Confidence 477777776 55555554332222345567776444444544331 1111 122334445555555555421 112
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.+.+...+++|+.+.|+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred ecCCcceEEecCcccceEEEE
Confidence 223355678888888887775
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=84.19 E-value=1.5 Score=43.77 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=34.4
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCce
Q 007620 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
..+++.+++|.. . .++ |+||++|+. ++. ...+......||++||+|+. |+.+.
T Consensus 37 ~~~p~~v~~P~~--~-g~~--PvVv~lHG~------------~~~---~~~y~~l~~~Las~G~~Vva-pD~~g 89 (313)
T PLN00021 37 PPKPLLVATPSE--A-GTY--PVLLFLHGY------------LLY---NSFYSQLLQHIASHGFIVVA-PQLYT 89 (313)
T ss_pred CCceEEEEeCCC--C-CCC--CEEEEECCC------------CCC---cccHHHHHHHHHhCCCEEEE-ecCCC
Confidence 478999999974 2 245 999997742 111 11111224678999999999 77654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.04 E-value=19 Score=34.73 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCceeeecCCCCCcccceEEccCCC-EEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Ws 95 (595)
.|+..--+.+|.. .....++|--. .+||.+ + ..+-.+++|..++. +..+...+... -++-=.||
T Consensus 57 aGk~v~~~~lpaR--~Hgi~~~p~~~ravafAR-r--------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs 122 (366)
T COG3490 57 AGKIVFATALPAR--GHGIAFHPALPRAVAFAR-R--------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFS 122 (366)
T ss_pred CCceeeeeecccc--cCCeecCCCCcceEEEEe-c--------CCceEEEECCCCCcCcEEEecccCce---eecccccC
Confidence 4666655556664 77888999755 455544 3 34777888988765 44444333321 13344799
Q ss_pred cCCcEEEEE
Q 007620 96 NNSTLLIFT 104 (595)
Q Consensus 96 pdg~~l~~~ 104 (595)
|||++|+-+
T Consensus 123 ~dG~~LYAT 131 (366)
T COG3490 123 PDGRLLYAT 131 (366)
T ss_pred CCCcEEEee
Confidence 999988776
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.04 E-value=3.8 Score=39.27 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=55.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC----
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES---- 80 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~---- 80 (595)
.-+-|+||+ ++.=.+.|.++-. .+-...|||..++|.++... ++...||=+..++|--+.+-..
T Consensus 168 ~~VrLCDi~---SGs~sH~LsGHr~--~vlaV~Wsp~~e~vLatgsa-------Dg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 168 VQVRLCDIA---SGSFSHTLSGHRD--GVLAVEWSPSSEWVLATGSA-------DGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred CcEEEEecc---CCcceeeeccccC--ceEEEEeccCceeEEEecCC-------CceEEEEEeecccceeEEeecccCcc
Confidence 346788998 3555567765444 48899999999999998765 4556666444333322222111
Q ss_pred -----CCccccccccceEEecCCcEEEEE
Q 007620 81 -----PDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 81 -----~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....++.+..++|+.||+.++..
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred Cccccccccccceeeeeeecccchhhhhc
Confidence 111223456789999999987764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.86 E-value=69 Score=34.70 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=22.2
Q ss_pred ceEEEEcC-CCC-eeecC-CCCeeeeeEECCCCCeEEEE
Q 007620 157 AQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQKYVLIT 192 (595)
Q Consensus 157 ~~l~~~d~-~g~-~~~lt-~~~~~~~~~~SpDg~~l~~~ 192 (595)
++|+++|. +|. ...|- ..+.+..++||.||++.+-.
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccC
Confidence 35677777 663 44443 23344578899999876544
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=83.78 E-value=2.3 Score=42.53 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=44.0
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCcee
Q 007620 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (595)
Q Consensus 488 ~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (595)
...+|..+...+|.|.. ++ ..+.|+|||+|+|-| ++|+.... ...-..++++.||.|+. +.|
T Consensus 57 ~~~~~~~~~~~~y~p~~-~~--~~~~p~vly~HGGg~--------~~g~~~~~---~~~~~~~~~~~g~~vv~----vdY 118 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR-KA--AATAPVVLYLHGGGW--------VLGSLRTH---DALVARLAAAAGAVVVS----VDY 118 (312)
T ss_pred cCCCCCceeEEEECCCC-CC--CCCCcEEEEEeCCee--------eecChhhh---HHHHHHHHHHcCCEEEe----cCC
Confidence 45566778899999921 22 224599999886522 33333211 11224688889999999 555
Q ss_pred ecCCCCCCchhhHh
Q 007620 568 GEGDKLPNDRYLIL 581 (595)
Q Consensus 568 ~~~~~~~~~~~~~~ 581 (595)
+-.-..+.+....+
T Consensus 119 rlaPe~~~p~~~~d 132 (312)
T COG0657 119 RLAPEHPFPAALED 132 (312)
T ss_pred CCCCCCCCCchHHH
Confidence 54322233333333
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.2 Score=41.75 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEEEeCCC
Q 007620 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPS 563 (595)
Q Consensus 496 ~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~Vl~~~~ 563 (595)
...||.|++... .++|+||..|+.. +.+..|..... ..-+|. +||+|+. |+
T Consensus 2 ~Y~lYvP~~~~~---~~~PLVv~LHG~~-----------~~a~~~~~~s~--~~~lAd~~Gfivvy-P~ 53 (220)
T PF10503_consen 2 SYRLYVPPGAPR---GPVPLVVVLHGCG-----------QSAEDFAAGSG--WNALADREGFIVVY-PE 53 (220)
T ss_pred cEEEecCCCCCC---CCCCEEEEeCCCC-----------CCHHHHHhhcC--HHHHhhcCCeEEEc-cc
Confidence 467999998653 2569999988531 12222322111 234454 5999998 54
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.42 E-value=35 Score=34.83 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=23.0
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
-+..++||.+|-||+....+ ..+.+||+..
T Consensus 391 ~vk~i~FsENGY~Lat~add-------------~~V~lwDLRK 420 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADD-------------GSVKLWDLRK 420 (506)
T ss_pred ceeEEEeccCceEEEEEecC-------------CeEEEEEehh
Confidence 45689999999999888753 2488888753
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.25 E-value=75 Score=34.67 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=24.8
Q ss_pred eEEEEcC-CCCeeecCCCCeeeeeEECCCCCeEEEEEccc
Q 007620 158 QLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHR 196 (595)
Q Consensus 158 ~l~~~d~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~ 196 (595)
.|.+.|+ +|+.-.-........+.|.+|++.++|++.+.
T Consensus 156 ~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~ 195 (682)
T COG1770 156 TLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDE 195 (682)
T ss_pred EEEEEecccccccchhhcccccceEEecCCCeEEEEEEcC
Confidence 4566677 66432211112234789999999999998653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=9.3 Score=36.72 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=39.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+..-+|||||++|+-+- .+- ..+..-|=++|...+ -.++-..+.- +-+...+.|.+||+.|+..
T Consensus 115 fyGHGvfs~dG~~LYATE-ndf----d~~rGViGvYd~r~~-fqrvgE~~t~--GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 115 FYGHGVFSPDGRLLYATE-NDF----DPNRGVIGVYDAREG-FQRVGEFSTH--GIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred eecccccCCCCcEEEeec-CCC----CCCCceEEEEecccc-cceecccccC--CcCcceeEEecCCcEEEEe
Confidence 566889999998765543 221 134456777887633 2333222221 1123488999999998885
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.01 E-value=9.8 Score=39.64 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=40.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-ceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|.|+.+.|.|+. ..++++-+++-. ++.+.-... +.+-.+.|++.+..|+-.
T Consensus 147 ~v~c~~W~p~S~~vl~c~-----------g~h~~IKpL~~n~k~i~WkAHD-----GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-----------GGHISIKPLAANSKIIRWRAHD-----GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred eeEEEEECCCCCceEEec-----------CCeEEEeecccccceeEEeccC-----cEEEEeecCccccceeec
Confidence 578899999999999985 368888888654 334432222 134588999988877653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.91 E-value=38 Score=33.06 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=29.6
Q ss_pred ecceEEEEcCCCCe-eecCCC----CeeeeeEECCCCCeEEEEEc
Q 007620 155 TTAQLVLGSLDGTA-KDFGTP----AVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 155 ~~~~l~~~d~~g~~-~~lt~~----~~~~~~~~SpDg~~l~~~~~ 194 (595)
+.+.+|++++.|++ +..+.+ +.+.....||.|.+|++...
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 45679999998864 455543 24557889999999998864
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=3.1 Score=42.01 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=43.5
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..|...|...||.+|+.....|. .+ + |+||.+|+ -... ...+......|+++||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~--~~-~----~~vll~HG--------------~~~~-~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAP--HH-D----RVVVICPG--------------RIES-YVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCC--CC-C----cEEEEECC--------------ccch-HHHHHHHHHHHHHCCCeEEE
Confidence 56778888899999999998774 21 1 56676553 1110 00111123578899999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
+|.+..|.
T Consensus 87 -~D~~G~G~ 94 (330)
T PRK10749 87 -IDHRGQGR 94 (330)
T ss_pred -EcCCCCCC
Confidence 88887774
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.26 E-value=52 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=22.4
Q ss_pred EcC-CCC-eeecCCCCeeeeeEECCCCCeEEEEEcc
Q 007620 162 GSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 162 ~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+|+ +|+ .-.+..+..+..+.||++|..++++...
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 444 553 3333344456688999999999998754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.12 E-value=55 Score=31.07 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=50.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+|+++.+ .+..+....+.-.......+||+.-+.++++... ++.-+||-.... ..+.+..++..
T Consensus 39 ~L~ile~~~---~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------DGSLrl~d~~~~-s~Pi~~~kEH~--- 104 (311)
T KOG0277|consen 39 RLFILEVTD---PKGIQECQSYDTEDGLFDVAWSENHENQVIAASG-------DGSLRLFDLTMP-SKPIHKFKEHK--- 104 (311)
T ss_pred eEEEEecCC---CCCeEEEEeeecccceeEeeecCCCcceEEEEec-------CceEEEeccCCC-CcchhHHHhhh---
Confidence 589999863 3333333333333357789999999988887763 566777742211 22333333221
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
.++-++.|.+-.+.++.+
T Consensus 105 -~EV~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 105 -REVYSVDWNTVRRRIFLT 122 (311)
T ss_pred -hheEEeccccccceeEEe
Confidence 145578898877766665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-09
Identities = 62/449 (13%), Positives = 123/449 (27%), Gaps = 132/449 (29%)
Query: 126 SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPD 185
+ K+I+ D+++ + S + +L V VE
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS------GTLRLFWTL----LSKQEEMVQKFVEEVLR 88
Query: 186 QKYVLITSMHRPYSYKVPCA---RFSQKVQVWTTDG---------------KLVRELCDL 227
Y + S + + P + ++ D KL + L +L
Sbjct: 89 INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 228 PPAEDIPVCYNSVREGM-------------RSISWRADKPSTLYWVEAQDRGDANVEVSP 274
PA+++ + G+ S + ++W+ + + N SP
Sbjct: 148 RPAKNVLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCN---SP 195
Query: 275 RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334
++ E+L KL + +W S N + + L
Sbjct: 196 ETVL-------------EMLQKLLYQIDP-NWTSRSDHSSNIK-LRIHSIQAELRRLLKS 240
Query: 335 DVAPRVLFDRVFENVYS-------DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387
L V NV + + ++ T+ V + I + +
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 388 FTPEGNIPFLDLFDINTGSKER----------------IWESNRE-----KYFETAVALV 426
TP+ L + + I ES R+ ++ V
Sbjct: 298 LTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----V 350
Query: 427 FGQGEEDINLNQLKILTSKESKTEITQYHILS-WPLKKSSQITNFPHPYPTLASLQKEMI 485
I + L +L E + + LS +P S+ I P L+ + ++I
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFP--PSAHI-----PTILLSLIWFDVI 400
Query: 486 KYQ--------------RKDGVPLTATLY 500
K K T ++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 47/214 (21%)
Query: 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96
SPDGK+IAF +R +EE VS +W+AD ET +K + E+ +I S W
Sbjct: 65 RISPDGKKIAF-MRANEEKKVS----EIWVADLETLSSKKILEAKNI------RSLEWNE 113
Query: 97 NSTLLIFTIPSSRRDPPKKTMVPL-----GPKIQSNEQKNIII----SRMTDNLLKDEYD 147
+S L+ R D + E+ I S +
Sbjct: 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRF 173
Query: 148 ESLF-----------------DYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190
S Y+ + + ++ V D + +L
Sbjct: 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIY--IWEDGKEEKMFEKVSFYA-VDSDGERIL 230
Query: 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224
+ S+ +++ DGK V +
Sbjct: 231 LYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 29 DGAKINFVS-WSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86
AK ++S G+ +A+ + + + +DN + + I + + + + +
Sbjct: 10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKY--ENTIVIENLKNNARRFIENAT----- 62
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116
+ + F + K +
Sbjct: 63 ----MPRISPDGKKIAFM---RANEEKKVS 85
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-05
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLN 86
+ IN + PDG++IA V N + ++ + E GE K + F
Sbjct: 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTA----DLYFYNGENGEIKRITYFSGKSTGRR 106
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPP 113
+ + L+I + P
Sbjct: 107 MFTDVAGFDPDGNLIIS---TDAMQPF 130
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 30/265 (11%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74
D G + + +F + S + + IA+ + + + + D E +
Sbjct: 406 DLETGKPTVIERSREAMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464
Query: 75 KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII 134
+ + + +S L + S R P V L + +
Sbjct: 465 FAATTEN-----SHDYAPAFDADSKNLYYL--SYRSLDPSPDRVVLNFSFEVVSK----- 512
Query: 135 SRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSM 194
L+ + + + S G + + P ++I
Sbjct: 513 -PFVIPLIPGSPNPTKLVPRSM-----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 566
Query: 195 HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254
Y VP K V D+ + V + + AD+
Sbjct: 567 SSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRK 620
Query: 255 STLYWVEAQDRGDANVEVSPRDIIY 279
+ + + +E +
Sbjct: 621 TVMVRKDDGKIYTFPLEKPEDERTV 645
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA 67
++RL PEK G+ N SPDG A S +V+ K +++
Sbjct: 63 LLYRLSLAGDPSPEKVDTGFATIC-NNDHGISPDGALYAISDKVEFG------KSAIYLL 115
Query: 68 DAETGEAKPLFE---------SPD 82
+ G + + + SPD
Sbjct: 116 PSTGGTPRLMTKNLPSYWHGWSPD 139
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.97 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.97 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.96 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.95 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.95 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.94 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.93 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.74 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.6 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.57 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.54 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.48 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.44 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.42 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.41 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.41 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.39 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.38 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.38 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.32 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.27 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.25 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.23 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.22 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.22 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.21 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.19 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.19 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.13 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.12 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.12 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.11 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.1 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.09 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.09 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.08 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.05 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.04 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.03 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.03 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.02 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.01 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.99 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.97 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.92 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.91 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.91 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.9 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.9 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.86 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.85 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.84 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.84 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.83 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.82 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.82 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.81 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.81 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.79 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.79 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.78 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.77 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.77 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.76 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.76 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.76 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.75 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.74 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.74 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.74 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.73 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.72 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.71 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.7 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.7 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.69 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.69 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.69 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.69 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.68 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.66 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.65 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.64 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.64 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.64 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.63 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.63 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.62 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.62 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.61 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.61 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.61 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.6 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.55 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.55 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.54 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.53 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.52 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.52 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.49 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.48 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.47 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.47 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.46 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.46 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.45 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.45 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.43 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.41 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.37 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.37 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.35 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.33 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.33 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.32 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.32 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.29 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.29 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.28 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.28 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.27 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.23 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.22 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.21 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.2 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.16 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.16 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.15 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 98.12 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.12 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.12 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.08 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.06 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.04 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.02 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.02 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.01 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.99 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.94 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.92 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.88 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.81 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.8 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.79 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.77 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.74 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.74 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.73 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.69 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.67 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.66 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.66 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.66 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.63 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.63 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.61 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.6 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.55 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.51 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.5 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.48 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.46 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.44 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.42 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.41 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.41 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.38 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.34 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.33 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.32 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 97.3 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.29 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.17 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.16 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.16 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 97.14 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.14 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.08 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 97.04 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.02 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.98 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.9 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.88 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.82 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.75 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 96.75 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 96.74 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 96.73 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.72 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 96.62 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.57 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 96.53 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.5 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 96.5 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 96.48 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.43 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 96.4 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.39 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 96.38 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 96.3 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 96.25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.19 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.13 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 96.06 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.02 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 95.92 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.92 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 95.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 95.87 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 95.84 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.77 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 95.74 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 95.7 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 95.67 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 95.55 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 95.49 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 95.47 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 95.44 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 95.41 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 95.33 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.27 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 95.22 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 95.18 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 95.14 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 95.09 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 95.01 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 94.98 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 94.97 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 94.91 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 94.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 94.74 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 94.68 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 94.65 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 94.55 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 94.5 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 94.47 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.4 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 94.26 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 94.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.17 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 94.13 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 93.81 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 93.79 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.76 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 93.7 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 93.66 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 93.65 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 93.6 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 93.58 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 93.56 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 93.52 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.37 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 93.27 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 93.1 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.07 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 93.04 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 92.99 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 92.83 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 92.81 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 92.63 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 92.38 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 92.34 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 92.34 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 91.9 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 91.82 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 91.62 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 91.52 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 91.12 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 90.83 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 90.78 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 90.46 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 90.16 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 90.02 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 89.85 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 89.03 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 88.55 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 88.07 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 87.43 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 87.19 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 86.19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 86.0 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 85.72 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 84.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 84.33 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 84.21 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.98 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 83.71 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 82.87 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 82.42 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 82.38 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 81.64 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 81.34 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 81.16 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 80.98 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-30 Score=287.35 Aligned_cols=428 Identities=10% Similarity=-0.017 Sum_probs=260.8
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCC--cc--cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KI--NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~--~~--~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
.|+++|+. +|+.+++....... .. ..+.|||||++|||......-- ......++|++|+++|+.++|+...
T Consensus 37 ~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-r~~~~~~~~~~d~~~~~~~~l~~~~ 111 (740)
T 4a5s_A 37 NILVFNAE----YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW-RHSYTASYDIYDLNKRQLITEERIP 111 (740)
T ss_dssp EEEEEETT----TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS-SSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECC----CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE-EEccceEEEEEECCCCcEEEcccCC
Confidence 58999998 77777664322211 12 2379999999999987631100 0012368999999999998887654
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. .+..+.|||||+.|+|.. ...||+
T Consensus 112 ~-----~~~~~~~SPdG~~la~~~--------------------------------------------------~~~i~~ 136 (740)
T 4a5s_A 112 N-----NTQWVTWSPVGHKLAYVW--------------------------------------------------NNDIYV 136 (740)
T ss_dssp T-----TEEEEEECSSTTCEEEEE--------------------------------------------------TTEEEE
T ss_pred C-----cceeeEECCCCCEEEEEE--------------------------------------------------CCeEEE
Confidence 3 466899999999999972 124777
Q ss_pred EcC-CCCeeecCCCC----ee----------------eeeEECCCCCeEEEEEcccCcccc--c----------c-----
Q 007620 162 GSL-DGTAKDFGTPA----VY----------------TAVEPSPDQKYVLITSMHRPYSYK--V----------P----- 203 (595)
Q Consensus 162 ~d~-~g~~~~lt~~~----~~----------------~~~~~SpDg~~l~~~~~~~~~~~~--~----------~----- 203 (595)
+++ +|+.++|+..+ .+ ..+.|||||++|+|.+.+...... + +
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 777 45677776432 11 248899999999998754321000 0 0
Q ss_pred -C---c--ccceeEEEEcCCC---c---eEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccc
Q 007620 204 -C---A--RFSQKVQVWTTDG---K---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (595)
Q Consensus 204 -~---~--~~~~~l~~~d~~g---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~ 271 (595)
+ + .....|+++|+++ + +.+.+.... .+.+.......+.|+|||+. +++.....
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~wspdg~~-~~~~~~r~------- 281 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA-------SMLIGDHYLCDVTWATQERI-SLQWLRRI------- 281 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH-------HHHTSCEEEEEEEEEETTEE-EEEEEESS-------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc-------cCCCCCeEEEEEEEeCCCeE-EEEEeCCC-------
Confidence 0 0 0123799999988 7 555553210 00000011235789999984 33321111
Q ss_pred cCCcceEEeccCCCCCCCC-------ceecc-c-cCcc-----ccceeecCCCcEEE-EEEeecccceEEEEEeCCCCCC
Q 007620 272 VSPRDIIYTQPAEPAEGEK-------PEILH-K-LDLR-----FRSVSWCDDSLALV-NETWYKTSQTRTWLVCPGSKDV 336 (595)
Q Consensus 272 ~~~~~~~~~~d~~~~~g~~-------~~~l~-~-~~~~-----~~~~~wspDg~~l~-~~~~~~~~~~~L~~~d~~~~~~ 336 (595)
.....|+++|+ ++|+ .+.+. . .... ...+.|||||+.++ +.+ .+.+..+||++|+++ +
T Consensus 282 -~~~~~i~~~d~---~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s-~~~G~~~l~~~~~~~--~ 354 (740)
T 4a5s_A 282 -QNYSVMDICDY---DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS-NEEGYRHICYFQIDK--K 354 (740)
T ss_dssp -TTEEEEEEEEE---ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE-CTTSCEEEEEEETTC--S
T ss_pred -CCEEEEEEEEC---CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE-cCCCceEEEEEECCC--C
Confidence 11235777786 4445 23332 1 1222 24789999999876 443 345678999999998 4
Q ss_pred CcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeee--cCCcccEEEEecCCCCCCCCcceeEeeecCCCcee-eeeec
Q 007620 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK--ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWES 413 (595)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~ 413 (595)
+.+.|+....... ..+..||+.|+|.+.. .......| +++++.+++.+ +|+..
T Consensus 355 ~~~~lT~g~~~v~--------~~~~~d~~~i~f~~~~~~~~~~~~~l----------------y~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 355 DCTFITKGTWEVI--------GIEALTSDYLYYISNEYKGMPGGRNL----------------YKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp SCEESCCSSSCEE--------EEEEECSSEEEEEESCGGGCTTCBEE----------------EEEETTEEEEEEESSTT
T ss_pred ceEecccCCEEEE--------EEEEEeCCEEEEEEecCCCCCceeEE----------------EEEECCCCCcceeeccc
Confidence 5677764432110 1122458888888754 11112234 45676555443 45432
Q ss_pred CccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCC---CCcCCC-ceEEEEEEC
Q 007620 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY---PTLASL-QKEMIKYQR 489 (595)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~---~~~~~~-~~e~v~~~~ 489 (595)
... ...... ...||+++++++++.++.. |+.+++++..+++..+++..|... .....+ .++.+++ +
T Consensus 411 ~~~-~~~~~~-------~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~ 480 (740)
T 4a5s_A 411 LNP-ERCQYY-------SVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-I 480 (740)
T ss_dssp TST-TTBCBE-------EEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-E
T ss_pred cCC-CCCceE-------EEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-c
Confidence 100 001111 2468999999999998877 889999998878777776654221 112224 6788888 7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcc---cCCCCchhHHHh-ccCeEEEeCCCCc
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF---SGMTPTSSLIFL-ARRFAVLAGPSIP 565 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~---~~~~~~~~q~la-~~GY~Vl~~~~~~ 565 (595)
.||.+|+++|++|+++++++++ |+||++|++ |... ..+.....++++ ++||+|+. ++.+
T Consensus 481 ~dg~~l~~~~~~P~~~~~~~~~--P~vv~~HGg--------------~~~~~~~~~~~~~~~~~l~~~~G~~Vv~-~D~r 543 (740)
T 4a5s_A 481 LNETKFWYQMILPPHFDKSKKY--PLLLDVYAG--------------PCSQKADTVFRLNWATYLASTENIIVAS-FDGR 543 (740)
T ss_dssp ETTEEEEEEEEECTTCCTTSCE--EEEEECCCC--------------TTCCCCCCCCCCSHHHHHHHTTCCEEEE-ECCT
T ss_pred cCCeEEEEEEEeCCCCCCCCCc--cEEEEECCC--------------CcccccccccCcCHHHHHHhcCCeEEEE-EcCC
Confidence 8999999999999999887756 999997753 2211 111222345666 59999999 5544
Q ss_pred e
Q 007620 566 I 566 (595)
Q Consensus 566 ~ 566 (595)
.
T Consensus 544 G 544 (740)
T 4a5s_A 544 G 544 (740)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=277.60 Aligned_cols=419 Identities=12% Similarity=0.108 Sum_probs=269.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCC-----------------------CcccceEEccCCCEEEEEEecccccccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----------------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCK 61 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-----------------------~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~ 61 (595)
..||+.|+. +|+.++++..... ..+..+.|||||++|+|.+.
T Consensus 64 ~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~----------- 128 (741)
T 2ecf_A 64 LDLWSYDIG----SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG----------- 128 (741)
T ss_dssp EEEEEEETT----TCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-----------
T ss_pred cEEEEEECC----CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-----------
Confidence 479999998 7888888743222 12678999999999999862
Q ss_pred eEEEEEECCCC---ceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccc
Q 007620 62 LRVWIADAETG---EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (595)
Q Consensus 62 ~~L~v~d~~~g---~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 138 (595)
.+||+++++++ +.++++.... .+..+.|||||+.|+|...
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~-------------------------------- 171 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRG-------------------------------- 171 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEET--------------------------------
T ss_pred CcEEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeC--------------------------------
Confidence 68999999998 7888865543 4678999999999999621
Q ss_pred cccccCcCCccceEEeecceEEEEcC-CCCeeecCCCCe------------------eeeeEECCCCCeEEEEEcccCcc
Q 007620 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV------------------YTAVEPSPDQKYVLITSMHRPYS 199 (595)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~~------------------~~~~~~SpDg~~l~~~~~~~~~~ 199 (595)
.+|+++++ +|+.++++.... ...++|||||++|++........
T Consensus 172 ------------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 172 ------------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPV 233 (741)
T ss_dssp ------------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred ------------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCC
Confidence 25777777 456666654321 25689999999999987543100
Q ss_pred cc---------------ccC-----cccceeEEEEcCCC-ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEE
Q 007620 200 YK---------------VPC-----ARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (595)
Q Consensus 200 ~~---------------~~~-----~~~~~~l~~~d~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (595)
.. +.+ ......|+++|+++ ++.+.+...... ......+.| |||+. |+
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~~-pDg~~-l~ 301 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQ----------DIYLARVNW-RDPQH-LS 301 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCS----------SEEEEEEEE-EETTE-EE
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCc----------ceEEEEEEe-CCCCE-EE
Confidence 00 000 00123799999988 876665422100 011245899 99985 55
Q ss_pred EEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCc-----cccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-----RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+... +.. .....++++|+ .+++.+.+..... ....+.|||||+. ++... ..+..+||.+++++
T Consensus 302 ~~~~-~~~------~~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~-~~~~~-~~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 302 FQRQ-SRD------QKKLDLVEVTL---ASNQQRVLAHETSPTWVPLHNSLRFLDDGSI-LWSSE-RTGFQHLYRIDSKG 369 (741)
T ss_dssp EEEE-ETT------SSEEEEEEEET---TTCCEEEEEEEECSSCCCCCSCCEECTTSCE-EEEEC-TTSSCEEEEECSSS
T ss_pred EEEe-ccc------CCeEEEEEEEC---CCCceEEEEEcCCCCcCCcCCceEECCCCeE-EEEec-CCCccEEEEEcCCC
Confidence 4422 111 12346788886 4456665543221 2357899999994 44332 34557999999876
Q ss_pred CCCCcEEEeecc--cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeee
Q 007620 334 KDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (595)
Q Consensus 334 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (595)
+ .+.|.... +.. ...|++||+.|++.....+.....+| .+++..+..+.|.
T Consensus 370 --~-~~~l~~~~~~v~~--------~~~~s~dg~~l~~~~~~~~~~~~~l~----------------~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 370 --K-AAALTHGNWSVDE--------LLAVDEKAGLAYFRAGIESARESQIY----------------AVPLQGGQPQRLS 422 (741)
T ss_dssp --C-EEESCCSSSCEEE--------EEEEETTTTEEEEEECSSCTTCBEEE----------------EEETTCCCCEECC
T ss_pred --C-eeeeeecceEEEe--------EeEEeCCCCEEEEEEeCCCCceEEEE----------------EEEcCCCCeeecc
Confidence 3 45554322 222 12599999999887753221123444 4454333345554
Q ss_pred ecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCC-C---CCCcC--CC-ceEE
Q 007620 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH-P---YPTLA--SL-QKEM 484 (595)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~-~---~~~~~--~~-~~e~ 484 (595)
.. ..+.. ..||+|++++++..++...|+++|+++..++..+.|+.... . ..+.. .+ .+|.
T Consensus 423 ~~------~~~~~-------~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 489 (741)
T 2ecf_A 423 KA------PGMHS-------ASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEF 489 (741)
T ss_dssp CS------CSEEE-------EEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEE
T ss_pred cC------CCceE-------EEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEE
Confidence 31 11111 46899999999999999999999999987666666765432 0 12222 45 8999
Q ss_pred EEEECCCC-cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhccCeEEEeCC
Q 007620 485 IKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGP 562 (595)
Q Consensus 485 v~~~~~DG-~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~~GY~Vl~~~ 562 (595)
++|++.|| .+|++++++|.++++++++ |+||++|+++.+ ......|..... ...+.||++||+|+. +
T Consensus 490 ~~~~~~~g~~~l~~~~~~P~~~~~~~~~--p~vv~~hG~~~~--------~~~~~~~~~~~~~~~~~~l~~~G~~v~~-~ 558 (741)
T 2ecf_A 490 GTLTAADGKTPLNYSVIKPAGFDPAKRY--PVAVYVYGGPAS--------QTVTDSWPGRGDHLFNQYLAQQGYVVFS-L 558 (741)
T ss_dssp EEEECTTSSCEEEEEEECCSSCCTTSCE--EEEEECCCSTTC--------CSCSSCCCCSHHHHHHHHHHHTTCEEEE-E
T ss_pred EEEEcCCCCEEEEEEEEeCCCCCCCCCc--CEEEEEcCCCCc--------ccccccccccchhHHHHHHHhCCCEEEE-E
Confidence 99999999 9999999999998776645 999997753110 000111110000 246899999999999 6
Q ss_pred CCceee
Q 007620 563 SIPIIG 568 (595)
Q Consensus 563 ~~~~~~ 568 (595)
+.+..|
T Consensus 559 d~rG~g 564 (741)
T 2ecf_A 559 DNRGTP 564 (741)
T ss_dssp CCTTCS
T ss_pred ecCCCC
Confidence 655444
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-27 Score=263.89 Aligned_cols=418 Identities=12% Similarity=0.077 Sum_probs=259.9
Q ss_pred eeEEEecCCCCCCCCc--eeeecCCCC---------------CcccceEEccCCCEEEEEEecccccccCCCceEEEEEE
Q 007620 6 GIGIHRLLPDDSLGPE--KEVHGYPDG---------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD 68 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~--~~lt~~~~~---------------~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d 68 (595)
+| +.|+. +|+. +.+...... ..+..++|||| ++|+|... ..|+++|
T Consensus 45 ~i-~~d~~----tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~-----------~~i~~~d 107 (706)
T 2z3z_A 45 DL-VFNKA----NGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ-----------GGLVGFD 107 (706)
T ss_dssp EE-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET-----------TEEEEEE
T ss_pred cE-EEECC----CCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC-----------CEEEEEE
Confidence 47 78887 7766 666532110 24778999999 88888752 6899999
Q ss_pred CCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCc
Q 007620 69 AETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (595)
Q Consensus 69 ~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (595)
+++++.++++.... .+..+.|||||+.|+|..
T Consensus 108 ~~~~~~~~l~~~~~-----~~~~~~~SpdG~~la~~~------------------------------------------- 139 (706)
T 2z3z_A 108 MLARKVTYLFDTNE-----ETASLDFSPVGDRVAYVR------------------------------------------- 139 (706)
T ss_dssp TTTTEEEEEECCTT-----CCTTCEECTTSSEEEEEE-------------------------------------------
T ss_pred CCCCceEEccCCcc-----cccCCcCCCCCCEEEEEE-------------------------------------------
Confidence 99999888875543 467899999999999852
Q ss_pred cceEEeecceEEEEcC-C-----CCeeecCCCC-e---------------eeeeEECCCCCeEEEEEcccCccccc----
Q 007620 149 SLFDYYTTAQLVLGSL-D-----GTAKDFGTPA-V---------------YTAVEPSPDQKYVLITSMHRPYSYKV---- 202 (595)
Q Consensus 149 ~~~~~~~~~~l~~~d~-~-----g~~~~lt~~~-~---------------~~~~~~SpDg~~l~~~~~~~~~~~~~---- 202 (595)
...|+++++ + |+.++++... . ...+.|||||++|++...+.......
T Consensus 140 -------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 140 -------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp -------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred -------CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 124666676 5 6566655332 1 35789999999999987432100000
Q ss_pred -----------cC-----cccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 203 -----------PC-----ARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 203 -----------~~-----~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
.+ ......|++||+++++.+.+....... .....+.|+|||+. |++.. .+..
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~-l~~~~-~~~~ 280 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE----------KFLTNLSWSPDENI-LYVAE-VNRA 280 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT----------CEEEEEEECTTSSE-EEEEE-ECTT
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc----------eeEeeEEEECCCCE-EEEEE-eCCC
Confidence 00 011357999999988877664321000 11246899999984 55432 2211
Q ss_pred CcccccCCcceEEeccCCCCCCC-Cceecccc-Cc----cccceeecC--CCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGE-KPEILHKL-DL----RFRSVSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~-~~~~l~~~-~~----~~~~~~wsp--Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
.....++++|+ .++ ..+.+... .. ....+.||| ||+.++... ..+..+||.+++++ +..
T Consensus 281 ------~~~~~v~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~--~~g~~~l~~~~~~~--~~~ 347 (706)
T 2z3z_A 281 ------QNECKVNAYDA---ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR--RDGWNHLYLYDTTG--RLI 347 (706)
T ss_dssp ------SCEEEEEEEET---TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC--TTSSCEEEEEETTS--CEE
T ss_pred ------CCeeEEEEEEC---CCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc--cCCccEEEEEECCC--CEE
Confidence 11236777886 444 44444321 11 125689999 998554432 23567999999766 344
Q ss_pred EEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCcccc
Q 007620 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 418 (595)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 418 (595)
+.|......- . ..+.|++||+.|++.....+.....+| .+|+.+++.+.|....
T Consensus 348 ~~l~~~~~~v-~-----~~~~~spdg~~l~~~~~~~~~~~~~l~----------------~~d~~~~~~~~l~~~~---- 401 (706)
T 2z3z_A 348 RQVTKGEWEV-T-----NFAGFDPKGTRLYFESTEASPLERHFY----------------CIDIKGGKTKDLTPES---- 401 (706)
T ss_dssp EECCCSSSCE-E-----EEEEECTTSSEEEEEESSSCTTCBEEE----------------EEETTCCCCEESCCSS----
T ss_pred EecCCCCeEE-E-----eeeEEcCCCCEEEEEecCCCCceEEEE----------------EEEcCCCCceeccCCC----
Confidence 5554322110 0 015899999999888753211112344 5677777766664221
Q ss_pred ceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCC-ceEEEEEECCCC-cEEE
Q 007620 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDG-VPLT 496 (595)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~-~~e~v~~~~~DG-~~i~ 496 (595)
.+.. ..||+|++++++..++...|++++++++.+++.+.++..+ +. ....+ .++.+++++.|| .+|+
T Consensus 402 --~~~~-------~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~ 470 (706)
T 2z3z_A 402 --GMHR-------TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKN-PD-TGYAMPEIRTGTIMAADGQTPLY 470 (706)
T ss_dssp --SEEE-------EEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEEECC--------CCCCEEEEEEECTTSSSEEE
T ss_pred --ceEE-------EEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeeccccc-hh-hhcCCCCcEEEEEEcCCCCEEEE
Confidence 1221 4689999999999999999999999999887755555543 32 22335 889999999999 9999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
+++++|+++++++++ |+||++|+++.. ...+..|........++||++||+|+. ++.+..|
T Consensus 471 ~~~~~P~~~~~~~~~--p~iv~~HGg~~~--------~~~~~~~~~~~~~~~~~la~~G~~v~~-~d~rG~g 531 (706)
T 2z3z_A 471 YKLTMPLHFDPAKKY--PVIVYVYGGPHA--------QLVTKTWRSSVGGWDIYMAQKGYAVFT-VDSRGSA 531 (706)
T ss_dssp EEEECCTTCCTTSCE--EEEEECCCCTTC--------CCCCSCC----CCHHHHHHHTTCEEEE-ECCTTCS
T ss_pred EEEEeCCCCCCCCCc--cEEEEecCCCCc--------eeeccccccCchHHHHHHHhCCcEEEE-EecCCCc
Confidence 999999999877766 999997643210 000011211111246899999999999 6665544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-26 Score=257.07 Aligned_cols=396 Identities=15% Similarity=0.096 Sum_probs=255.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc----cccccceEEe--cCCcE-EEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL----NAVFGSFVWV--NNSTL-LIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~----~~~~~~~~Ws--pdg~~-l~~~ 104 (595)
.+..|+|||| .++|+..+..+ ++...||++ ..+|+.++||....... ...-..+.|+ |||+. |+|.
T Consensus 25 ~~~~~~~s~~--~~~~~~~~~~~----~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 25 RPACVGAVGD--EVWWVAPRPAE----AGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp CCEEEEEETT--EEEEEEEETTT----TTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred ccceeEEcCC--eEEEEecCccc----CCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 5788999955 78998875322 356789998 56788899986543100 0001156687 99999 8886
Q ss_pred ecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC----CCeeecCC-----CC
Q 007620 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKDFGT-----PA 175 (595)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~~~lt~-----~~ 175 (595)
.. ...+||+++++ ++.++|+. ..
T Consensus 98 ~~------------------------------------------------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~ 129 (662)
T 3azo_A 98 HF------------------------------------------------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGG 129 (662)
T ss_dssp BT------------------------------------------------TTCCEEEECTTSTTCCCCEECSCCCCSTTC
T ss_pred EC------------------------------------------------CCCeEEEEcCCCCCCCCCEeccCCccCCCC
Confidence 21 02468889987 67888876 22
Q ss_pred -eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC------ceEEEec-cCCCCccCCccccccccCCCCc
Q 007620 176 -VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------KLVRELC-DLPPAEDIPVCYNSVREGMRSI 247 (595)
Q Consensus 176 -~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g------~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 247 (595)
....++|||||++|++++...... .+ .....+|+++|+++ ++.+.+. ... .....+
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~ 193 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGE--GP-SDVRRFLAAVPLDGSAAADRSAVRELSDDAH-------------RFVTGP 193 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSS--ST-TCEEEEEEEEETTSTTTTCGGGSEESSCSCS-------------SEECCC
T ss_pred ccccCcEECCCCCEEEEEEecccCC--CC-CCceeEEEEEECCCCccccCCceeEEEecCC-------------CcccCc
Confidence 456899999999999997542100 00 01135899999998 7777776 332 112468
Q ss_pred eeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCC-CC---Cceecccc-CccccceeecCCCcEEEEEEeeccc
Q 007620 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GE---KPEILHKL-DLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 248 ~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~-g~---~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
.|||||+. |++.........+ ....++++++ + .| +.+.+... ......+.|||||+ +++.... .+
T Consensus 194 ~~SpDG~~-la~~~~~~~~~~~----~~~~i~~~d~---~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~-~~ 263 (662)
T 3azo_A 194 RLSPDGRQ-AVWLAWDHPRMPW----EGTELKTARV---TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDR-TG 263 (662)
T ss_dssp EECTTSSE-EEEEEECTTCCTT----TCEEEEEEEE---CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECT-TS
T ss_pred eECCCCCE-EEEEECCCCCCCC----CCcEEEEEEE---CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECC-CC
Confidence 89999985 6665322111000 1246888886 4 34 45556544 45677899999999 5555432 34
Q ss_pred ceEEEEEeCCCCCCCcEEEeecc--cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEee
Q 007620 323 QTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~ 400 (595)
...||++|+++ ++.+.++... +......++...+.++++|+.++... . + ...| +.+
T Consensus 264 ~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~--~~~l----------------~~~ 321 (662)
T 3azo_A 264 WWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-G--AAVL----------------GIL 321 (662)
T ss_dssp SCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-S--SCEE----------------EEE
T ss_pred CeEEEEEECCC--CceeecccccccccCccccccCceEeEeCCCEEEEEEE-c-C--ccEE----------------EEE
Confidence 55899999977 3455554322 11101111222255566666443332 1 1 2233 356
Q ss_pred ecCCCceeeeeecCccccceeeEEeeeCCCcccc-cccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCC
Q 007620 401 DINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLAS 479 (595)
Q Consensus 401 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~ 479 (595)
|+.+++.++|.... ..+. .+ +++++.+++...+...|+++|++++.+++.++|+..+........
T Consensus 322 d~~~~~~~~l~~~~-----~~~~---------~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~ 387 (662)
T 3azo_A 322 DPESGELVDAAGPW-----TEWA---------ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAY 387 (662)
T ss_dssp ETTTTEEEECCSSC-----CEEE---------EEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGG
T ss_pred ECCCCcEEEecCCC-----CeEE---------EEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccc
Confidence 77667665553221 1111 23 667889999999999999999999989999999987655444444
Q ss_pred C-ceEEEEEECCCCcEEEEEEEcCCCCC----CCCCCCCcEEEEeccCCccCcccCCcccCCCCccc-CCCCchhHHHhc
Q 007620 480 L-QKEMIKYQRKDGVPLTATLYLPPGYD----QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS-GMTPTSSLIFLA 553 (595)
Q Consensus 480 ~-~~e~v~~~~~DG~~i~g~l~~P~~~~----~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~-~~~~~~~q~la~ 553 (595)
+ .++.+.+++.||.+|+++|++|.+++ +++++ |+||++|+ ++.... ..+....++|++
T Consensus 388 ~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~--p~vv~~HG--------------~~~~~~~~~~~~~~~~l~~ 451 (662)
T 3azo_A 388 YPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELP--PYVVMAHG--------------GPTSRVPAVLDLDVAYFTS 451 (662)
T ss_dssp SCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCC--CEEEEECS--------------SSSSCCCCSCCHHHHHHHT
T ss_pred cCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCc--cEEEEECC--------------CCCccCcccchHHHHHHHh
Confidence 5 79999999999999999999999875 45545 99999764 332111 112245689999
Q ss_pred cCeEEEe
Q 007620 554 RRFAVLA 560 (595)
Q Consensus 554 ~GY~Vl~ 560 (595)
+||+|+.
T Consensus 452 ~G~~v~~ 458 (662)
T 3azo_A 452 RGIGVAD 458 (662)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 9999998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=267.89 Aligned_cols=429 Identities=12% Similarity=0.026 Sum_probs=258.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce---Eeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~---~~lt~ 79 (595)
..|++.|+. +|+.++++..... ..+..++|||||++|||.+..... -.......||++|+++|+. ++++
T Consensus 36 ~~i~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~~~~~~~l~- 109 (719)
T 1z68_A 36 NNIVLYNIE----TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIYDLSNGEFVRGNELP- 109 (719)
T ss_dssp SCEEEEESS----SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEECCSSCCC-
T ss_pred CCEEEEEcC----CCcEEEEEccccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEEECCCCccccceecC-
Confidence 368999998 8888888732111 026789999999999998763100 0001137899999999987 5553
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
. .+..+.|||||+.|+|... ..|
T Consensus 110 --~-----~~~~~~~SPDG~~la~~~~--------------------------------------------------~~i 132 (719)
T 1z68_A 110 --R-----PIQYLCWSPVGSKLAYVYQ--------------------------------------------------NNI 132 (719)
T ss_dssp --S-----SBCCEEECSSTTCEEEEET--------------------------------------------------TEE
T ss_pred --c-----ccccceECCCCCEEEEEEC--------------------------------------------------CeE
Confidence 2 4678999999999999621 246
Q ss_pred EEEcC-CCCeeecCCCC--------------------eeeeeEECCCCCeEEEEEcccCccccc----------------
Q 007620 160 VLGSL-DGTAKDFGTPA--------------------VYTAVEPSPDQKYVLITSMHRPYSYKV---------------- 202 (595)
Q Consensus 160 ~~~d~-~g~~~~lt~~~--------------------~~~~~~~SpDg~~l~~~~~~~~~~~~~---------------- 202 (595)
+++++ +|+.++|+... ....++|||||++|++.+.+.......
T Consensus 133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI 212 (719)
T ss_dssp EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence 66666 45555655321 013789999999999987542110000
Q ss_pred cC-----cccceeEEEEcCCCceEE---EeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCC
Q 007620 203 PC-----ARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (595)
Q Consensus 203 ~~-----~~~~~~l~~~d~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~ 274 (595)
.+ ......|++||+++++.. .+.. + ..+.+.......+.|+||++ +++. ..+.. ..
T Consensus 213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~SpD~~--~~~~-~~~~~------~~ 276 (719)
T 1z68_A 213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV-P------AMIASSDYYFSWLTWVTDER--VCLQ-WLKRV------QN 276 (719)
T ss_dssp ECCBTTSCCCEEEEEEEESSCHHHHCCEECCC-C------HHHHTSCEEEEEEEESSSSE--EEEE-EEESS------TT
T ss_pred cCCCCCCCCCeeEEEEEECCCCCccceeEccC-C------ccCCCCcceEEEeEEeCCCe--EEEE-Eeccc------cC
Confidence 00 001237899999887642 3211 0 00000001123588999964 4333 11111 11
Q ss_pred cceEEecc----CCCCCCCCceeccc-----cCcccc-----ceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 275 RDIIYTQP----AEPAEGEKPEILHK-----LDLRFR-----SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 275 ~~~~~~~d----~~~~~g~~~~~l~~-----~~~~~~-----~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
...++++| + .+++.+.+.. ....+. .+.|||||+.+++......+..+||++|++++ +.+.
T Consensus 277 ~~~l~~~d~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~ 351 (719)
T 1z68_A 277 VSVLSICDFREDW---QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQ 351 (719)
T ss_dssp EEEEEEEEECSSS---SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEE
T ss_pred eEEEEEEcccCCC---CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEe
Confidence 23577777 6 4455555552 233333 78999999976664333446679999999884 4566
Q ss_pred Eeecc--cccccCCCCCCCeeeCCCCCEEEEEeee--cCCcccEEEEecCCCCCCCCcceeEeeecCCC--ceeeeeecC
Q 007620 341 LFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKK--ENDEQIYILLNGRGFTPEGNIPFLDLFDINTG--SKERIWESN 414 (595)
Q Consensus 341 l~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g--~~~~l~~~~ 414 (595)
|+... +.. +.++ +|+.|++.... .......+| .+++.++ +.++|+...
T Consensus 352 lt~~~~~v~~---------~~~~-d~~~i~~~~~~~~~~~~~~~l~----------------~~~~~~g~~~~~~l~~~~ 405 (719)
T 1z68_A 352 ITSGKWEAIN---------IFRV-TQDSLFYSSNEFEEYPGRRNIY----------------RISIGSYPPSKKCVTCHL 405 (719)
T ss_dssp CSCSSSCEEE---------EEEE-CSSEEEEEESCGGGCTTCBEEE----------------EEECSSSSCCEEESSTTT
T ss_pred cccCceEEEE---------EEEE-eCCEEEEEEecCCCCCceEEEE----------------EEeCCCCCCCceeccCcc
Confidence 65322 222 3344 88888888753 111233444 4555444 234443211
Q ss_pred ccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCC---CCCcCCC-ceEEEEEECC
Q 007620 415 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP---YPTLASL-QKEMIKYQRK 490 (595)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~---~~~~~~~-~~e~v~~~~~ 490 (595)
.. ....+. ...|++|++++++..++.+.| .++++++.+++..+++..|.. ..+...+ .+|.+++++.
T Consensus 406 ~~-~~~~~~-------~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (719)
T 1z68_A 406 RK-ERCQYY-------TASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVD 476 (719)
T ss_dssp TT-TTBCBE-------EEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEET
T ss_pred CC-CCCceE-------EEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecC
Confidence 00 000111 135889999999988888877 588999888887777776532 1233345 8899999998
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhH-HHhccCeEEEeCCCCcee
Q 007620 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL-IFLARRFAVLAGPSIPII 567 (595)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q-~la~~GY~Vl~~~~~~~~ 567 (595)
| .+|++++++|+++++++++ |+||++|++..+ .... ..+.....+ +++++||+|+. ++.+..
T Consensus 477 ~-~~l~~~~~~P~~~~~~~~~--p~vl~~hG~~~~--------~~~~---~~~~~~~~~~l~~~~G~~v~~-~d~rG~ 539 (719)
T 1z68_A 477 E-ITLWYKMILPPQFDRSKKY--PLLIQVYGGPCS--------QSVR---SVFAVNWISYLASKEGMVIAL-VDGRGT 539 (719)
T ss_dssp T-EEEEEEEEECTTCCSSSCE--EEEEEECCCTTB--------CCCC---CCCCCCHHHHHHHTTCCEEEE-EECTTB
T ss_pred C-eEEEEEEEeCCCCCCCCCc--cEEEEECCCCCc--------Cccc---ccchhhHHHHHHhcCCeEEEE-EcCCCC
Confidence 8 9999999999998876655 999998753210 0000 111112334 44579999999 554433
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=269.28 Aligned_cols=431 Identities=10% Similarity=-0.009 Sum_probs=256.4
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCC--cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|++.|+. +|+.+++....... .+..++|||||++|||........ .......||++|+++|+.++++.....
T Consensus 38 ~i~~~d~~----~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 38 TVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY-QHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp CEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS-SSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CEEEEECC----CCcEEEEeccccccccccceEEECCCCCEEEEEecCccce-eecceeeEEEEECCCCceEeccCCccc
Confidence 58899998 77777666322210 277899999999999987532100 001237899999999988888654321
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
...+..+.|||||+.|+|... ..|++++
T Consensus 113 --~~~~~~~~~SPdG~~la~~~~--------------------------------------------------~~i~~~~ 140 (723)
T 1xfd_A 113 --NAKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYCA 140 (723)
T ss_dssp --SCCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEES
T ss_pred --cccccccEECCCCCEEEEEEC--------------------------------------------------CeEEEEE
Confidence 112567999999999999621 2467777
Q ss_pred C-CCCeeecCCCC--------------------eeeeeEECCCCCeEEEEEcccCcccccc----------------C--
Q 007620 164 L-DGTAKDFGTPA--------------------VYTAVEPSPDQKYVLITSMHRPYSYKVP----------------C-- 204 (595)
Q Consensus 164 ~-~g~~~~lt~~~--------------------~~~~~~~SpDg~~l~~~~~~~~~~~~~~----------------~-- 204 (595)
+ +|+.++++... ....++|||||++|++.+.......... .
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 7 44555554321 1146899999999999975431100000 0
Q ss_pred -c--ccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 205 -A--RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 205 -~--~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
+ .....|++||+.+++. +.+...... .........+.|+|||+. |+... ..+ .....+++
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~SpDg~~-l~~~~--~~~------~~~~~i~~ 284 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDP-------RMREYYITMVKWATSTKV-AVTWL--NRA------QNVSILTL 284 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCG-------GGSSEEEEEEEESSSSEE-EEEEE--ETT------SCEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccC-------CCccceeEEEEEeCCCeE-EEEEE--cCC------CCeEEEEE
Confidence 0 0123799999987763 555422100 000011235899999973 43321 111 12246778
Q ss_pred ccCCCCCCCCceecccc--Cccc----cceeecCCCcEEEEEEeeccc----ceEEEEEe-CCCCCCC---cEEEeecc-
Q 007620 281 QPAEPAEGEKPEILHKL--DLRF----RSVSWCDDSLALVNETWYKTS----QTRTWLVC-PGSKDVA---PRVLFDRV- 345 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~--~~~~----~~~~wspDg~~l~~~~~~~~~----~~~L~~~d-~~~~~~~---~~~l~~~~- 345 (595)
+|+ .+++...+... .... ..+.|||||+.|++......+ ..+||++| ..+ +. .+.|+...
T Consensus 285 ~d~---~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 285 CDA---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN--SSNDNIQSITSGDW 359 (723)
T ss_dssp EET---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC--SSSCCCCBSCCSSS
T ss_pred EeC---CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC--CCccceeEeecCCe
Confidence 886 54565554322 2222 378999999977664222223 56899999 555 33 45454321
Q ss_pred -cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC-ceeeeeecCccccceeeE
Q 007620 346 -FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAV 423 (595)
Q Consensus 346 -~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~ 423 (595)
+.. .+.|++||+.|++...........+| .+++.++ +...|+..... ...+.
T Consensus 360 ~~~~--------~~~~spdg~~l~~~~~~~~~~~~~l~----------------~~~~~~~~~~~~l~~~~~~--~~~~~ 413 (723)
T 1xfd_A 360 DVTK--------ILAYDEKGNKIYFLSTEDLPRRRQLY----------------SANTVGNFNRQCLSCDLVE--NCTYF 413 (723)
T ss_dssp CEEE--------EEEEETTTTEEEEEESSSCTTCCEEE----------------EECSSTTCCCBCSSTTSSS--SCCCC
T ss_pred EEEe--------eeEEcCCCCEEEEEEcCCCCcceEEE----------------EEeCCCCCCcceecccccC--CCCeE
Confidence 211 15899999999887643211123444 4555433 23334321000 00111
Q ss_pred EeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCC---CCCcCCC-ceEEEEEECCCCcEEEEEE
Q 007620 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP---YPTLASL-QKEMIKYQRKDGVPLTATL 499 (595)
Q Consensus 424 ~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~---~~~~~~~-~~e~v~~~~~DG~~i~g~l 499 (595)
...||+|++++++..++.+.|..++. +...++...+...+.. ......+ .+|.++|++.|| +|+++|
T Consensus 414 -------~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~ 484 (723)
T 1xfd_A 414 -------SASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQI 484 (723)
T ss_dssp -------EEEECTTSSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBE
T ss_pred -------EEEECCCCCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEE
Confidence 14689999999999999999986554 6544443333222211 1122334 789999999999 999999
Q ss_pred EcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcc--c-CCCC-chhHHHhccCeEEEeCCCCce
Q 007620 500 YLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF--S-GMTP-TSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 500 ~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~--~-~~~~-~~~q~la~~GY~Vl~~~~~~~ 566 (595)
++|+++++++++ |+||++|++ |... . .+.+ +..++|+++||+|+. ++.+.
T Consensus 485 ~~P~~~~~~~~~--p~vv~~HG~--------------~~~~~~~~~~~~~~~~~~l~~~G~~vv~-~d~rG 538 (723)
T 1xfd_A 485 LKPATFTDTTHY--PLLLVVDGT--------------PGSQSVAEKFEVSWETVMVSSHGAVVVK-CDGRG 538 (723)
T ss_dssp EBCSSCCSSSCE--EEEEECCCC--------------TTCCCCCCCCCCSHHHHHHHTTCCEEEC-CCCTT
T ss_pred EeCCCCCCCCcc--CEEEEEcCC--------------CCccccCccccccHHHHHhhcCCEEEEE-ECCCC
Confidence 999998876655 999997643 3210 1 1111 234678889999999 66553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-27 Score=255.15 Aligned_cols=359 Identities=14% Similarity=0.055 Sum_probs=240.2
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
+....|||||++|||++.+ ++..+||.+ ++|+.+++|..... .+..+.|||| + |+|.....
T Consensus 24 ~~~~~~~~DG~~la~~s~~-------~g~~~lw~~--~~g~~~~lt~~~~~----~~~~~~~spd-~-~l~~~~~~---- 84 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFS-------EGSVNAYLY--DGGETVKLNREPIN----SVLDPHYGVG-R-VILVRDVS---- 84 (582)
T ss_dssp EEEEEEEETTTEEEEEEEE-------TTEEEEEEE--ETTEEEECCSSCCS----EECEECTTCS-E-EEEEEECS----
T ss_pred hheeecCCCCCeEEEEEcc-------CCceeEEEE--cCCCcEeeeccccc----ccccccCCCC-e-EEEEeccC----
Confidence 6678999999999999875 456889986 68899999866521 4568999999 4 56643210
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC--CCCeeecCCCCeeeeeEECCCCCeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~g~~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
.| + ...+||.+++ +|...+++........+|||||+.++
T Consensus 85 ----------------~g----------------~-------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 85 ----------------KG----------------A-------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp ----------------TT----------------S-------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEE
T ss_pred ----------------CC----------------C-------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEE
Confidence 01 0 1246888998 77666776554344679999999988
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCccc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~ 270 (595)
+++.... .+.+||+++++.+.+...+. ..+.|+|||+. |++... +.+
T Consensus 126 ~~s~~~~------------~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~-la~~~~-~~~---- 172 (582)
T 3o4h_A 126 FTGATED------------RVALYALDGGGLRELARLPG---------------FGFVSDIRGDL-IAGLGF-FGG---- 172 (582)
T ss_dssp EEEECSS------------CEEEEEEETTEEEEEEEESS---------------CEEEEEEETTE-EEEEEE-EET----
T ss_pred EEecCCC------------CceEEEccCCcEEEeecCCC---------------ceEEECCCCCE-EEEEEE-cCC----
Confidence 8865432 34588999888888765431 35889999985 554422 211
Q ss_pred ccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec--cccc
Q 007620 271 EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFEN 348 (595)
Q Consensus 271 ~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~ 348 (595)
....++++|+ ++++.+.|+........+.|||||+.|+.. ...+...||++|++++ +.+.+... .+..
T Consensus 173 ---~~~~i~~~d~---~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~--~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~ 242 (582)
T 3o4h_A 173 ---GRVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKVTAGL--ETAREARLVTVDPRDG--SVEDLELPSKDFSS 242 (582)
T ss_dssp ---TEEEEEEEET---TTCCCEEECCSSCEEEEEEECTTSCEEEEE--ECSSCEEEEEECTTTC--CEEECCCSCSHHHH
T ss_pred ---CCeEEEEEcC---CCCCceEeecCCCccccceECCCCCEEEEc--cCCCeeEEEEEcCCCC--cEEEccCCCcChhh
Confidence 1235888886 567888887766777899999999987733 2334568999999984 44533222 2222
Q ss_pred ccCCCCCCCee--------eCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccce
Q 007620 349 VYSDPGSPMMT--------RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (595)
Q Consensus 349 ~~~~~~~~~~~--------~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (595)
+. |+||| .+++.....+ ...+| ++ |+..... ..
T Consensus 243 ---------~~~~~~~~~~~spdg-~~~~~~~~~g--~~~l~------------------~~--g~~~~~~-------~~ 283 (582)
T 3o4h_A 243 ---------YRPTAITWLGYLPDG-RLAVVARREG--RSAVF------------------ID--GERVEAP-------QG 283 (582)
T ss_dssp ---------HCCSEEEEEEECTTS-CEEEEEEETT--EEEEE------------------ET--TEEECCC-------SS
T ss_pred ---------hhhccccceeEcCCC-cEEEEEEcCC--cEEEE------------------EE--CCeeccC-------CC
Confidence 45 99999 5666654422 33444 22 3322210 01
Q ss_pred eeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCc---CCC-ceEEEEEECCCCcEEE
Q 007620 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL---ASL-QKEMIKYQRKDGVPLT 496 (595)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~---~~~-~~e~v~~~~~DG~~i~ 496 (595)
.+.. .+|+ |+ .++++.++...|+++|++++.+ +.++| .... ..+ ..|.++|++.||.+|+
T Consensus 284 ~v~~-------~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~-~~~~l------~~~~~~~~~~~~~~~~~~~~~~g~~i~ 347 (582)
T 3o4h_A 284 NHGR-------VVLW-RG-KLVTSHTSLSTPPRIVSLPSGE-PLLEG------GLPEDLRRSIAGSRLVWVESFDGSRVP 347 (582)
T ss_dssp EEEE-------EEEE-TT-EEEEEEEETTEEEEEEEETTCC-EEECC------CCCHHHHHTEEEEEEEEEECTTSCEEE
T ss_pred ceEE-------EEec-CC-EEEEEEcCCCCCCeEEEEcCCC-ceEEE------ecCCccccccCcceEEEEECCCCCEEE
Confidence 1111 3466 54 5668888899999999999765 55555 2222 345 8899999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcc-cCCCCchhHHHhccCeEEEeCCCCce
Q 007620 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF-SGMTPTSSLIFLARRFAVLAGPSIPI 566 (595)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~-~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (595)
+++++|+++++ +.|+||++|++ +... ...+....+.|+++||+|+. ++.+.
T Consensus 348 ~~~~~p~~~~~----~~p~vv~~HG~--------------~~~~~~~~~~~~~~~l~~~G~~v~~-~d~rG 399 (582)
T 3o4h_A 348 TYVLESGRAPT----PGPTVVLVHGG--------------PFAEDSDSWDTFAASLAAAGFHVVM-PNYRG 399 (582)
T ss_dssp EEEEEETTSCS----SEEEEEEECSS--------------SSCCCCSSCCHHHHHHHHTTCEEEE-ECCTT
T ss_pred EEEEcCCCCCC----CCcEEEEECCC--------------cccccccccCHHHHHHHhCCCEEEE-eccCC
Confidence 99999998764 34999997743 3211 11123456899999999999 55543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-25 Score=243.54 Aligned_cols=397 Identities=13% Similarity=0.027 Sum_probs=243.8
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc--ccccccceEEecCCcEEEEEecCCCCCCC
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~--~~~~~~~~~Wspdg~~l~~~~~~~~~~~~ 113 (595)
+..+|||++++|++.... .....||+++..+++.++|++..... ....+..+.|||||++|+|....
T Consensus 73 ~~p~~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~------ 141 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHKD-----KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKP------ 141 (695)
T ss_dssp CCCEEETTEEEEEEECTT-----CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEE------
T ss_pred CCCEEECCEEEEEEEcCC-----CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECC------
Confidence 344599999999987531 23578999999888888887532110 01135689999999999997421
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee---ecCCCCeeeeeEECCCCCeE
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~---~lt~~~~~~~~~~SpDg~~l 189 (595)
.|. ....|+++|+ +|+.. .+... ....++|||||+.|
T Consensus 142 ---------------~G~-----------------------~~~~i~v~dl~tg~~~~~~~~~~~-~~~~~~wspDg~~l 182 (695)
T 2bkl_A 142 ---------------NAA-----------------------DEAVLHVIDVDSGEWSKVDVIEGG-KYATPKWTPDSKGF 182 (695)
T ss_dssp ---------------TTC-----------------------SCCEEEEEETTTCCBCSSCCBSCC-TTCCCEECTTSSEE
T ss_pred ---------------CCC-----------------------ceEEEEEEECCCCCCcCCcccCcc-cccceEEecCCCEE
Confidence 110 1357899999 55544 22221 12578999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCce--EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
+|++...+............+|+++++.++. .+.+...+... .....+.|+|||+. |++.... .
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~----------~~~~~~~~SpDG~~-l~~~~~~-~-- 248 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP----------TTFLQSDLSRDGKY-LFVYILR-G-- 248 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT----------TCEEEEEECTTSCC-EEEEEEE-T--
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC----------EEEEEEEECCCCCE-EEEEEeC-C--
Confidence 9998643210000001124689999998665 23444332100 01235789999985 5454221 1
Q ss_pred cccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCC-CcEEEeecc-
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRV- 345 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~-~~~~l~~~~- 345 (595)
.....+++++. .+++.+.|.........+.| +||. +++..........|+++|+++++. ..+.|+...
T Consensus 249 -----~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 249 -----WSENDVYWKRP---GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp -----TTEEEEEEECT---TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred -----CCceEEEEEcC---CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 02346777775 44577777654444445556 6777 666543333456899999987420 125554321
Q ss_pred ---cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceee
Q 007620 346 ---FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (595)
Q Consensus 346 ---~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (595)
+.. +.|+ + ..+++.....+ ...|+ .+++..+..+.+.... ...+
T Consensus 319 ~~~l~~---------~~~~-~-~~lv~~~~~dg--~~~l~----------------~~~~~g~~~~~l~~~~----~~~v 365 (695)
T 2bkl_A 319 SASLLS---------VSIV-G-GHLSLEYLKDA--TSEVR----------------VATLKGKPVRTVQLPG----VGAA 365 (695)
T ss_dssp SCEEEE---------EEEE-T-TEEEEEEEETT--EEEEE----------------EEETTCCEEEECCCSS----SSEE
T ss_pred CCeEEE---------EEEE-C-CEEEEEEEECC--EEEEE----------------EEeCCCCeeEEecCCC----CeEE
Confidence 222 5566 3 44555544321 23343 3455322233331110 0011
Q ss_pred EEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcC
Q 007620 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502 (595)
Q Consensus 423 ~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P 502 (595)
. ..+++++++.++++.++...|+.+|++|+.+++.+.|+..+.. .+...+.+|.+.+++.||.+|+++|++|
T Consensus 366 ~-------~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p 437 (695)
T 2bkl_A 366 S-------NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHR 437 (695)
T ss_dssp C-------CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEE
T ss_pred E-------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEEC
Confidence 1 2456788899999999999999999999988888888876433 3333348999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccC-CCCchhHHHhccCeEEEeCCCC
Q 007620 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLAGPSI 564 (595)
Q Consensus 503 ~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~-~~~~~~q~la~~GY~Vl~~~~~ 564 (595)
.++++++++ |+||++|++ +..... .+....+.|+++||+|+. +++
T Consensus 438 ~~~~~~~~~--p~vl~~hGg--------------~~~~~~~~~~~~~~~l~~~G~~v~~-~d~ 483 (695)
T 2bkl_A 438 KDLKRDGNA--PTLLYGYGG--------------FNVNMEANFRSSILPWLDAGGVYAV-ANL 483 (695)
T ss_dssp TTCCCSSCC--CEEEECCCC--------------TTCCCCCCCCGGGHHHHHTTCEEEE-ECC
T ss_pred CCCCCCCCc--cEEEEECCC--------------CccccCCCcCHHHHHHHhCCCEEEE-Eec
Confidence 998765544 999997743 321111 112235789999999999 444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-25 Score=244.20 Aligned_cols=400 Identities=11% Similarity=0.045 Sum_probs=244.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc--cccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL--NAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~--~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
..+.|. |||++++|+..... .....||+++..+++.+.|++...... ...+..+.|||||++|+|....
T Consensus 75 ~~~~p~--~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~-- 145 (710)
T 2xdw_A 75 KYSCHF--KKGKRYFYFYNTGL-----QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-- 145 (710)
T ss_dssp EECCCE--EETTEEEEEEECSS-----CSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEE--
T ss_pred cCCCCE--EECCEEEEEEEcCC-----ceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcC--
Confidence 345554 99999999987521 234589999988888776643321100 0135689999999999997421
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQK 187 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~ 187 (595)
.|. ...+|+++|+ +|+..+++... .+..++|||||+
T Consensus 146 -------------------~G~-----------------------~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~ 183 (710)
T 2xdw_A 146 -------------------SGS-----------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK 183 (710)
T ss_dssp -------------------TTC-----------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS
T ss_pred -------------------CCC-----------------------ceEEEEEEECCCCCCCcccccCcccceEEEEeCCC
Confidence 110 1247899999 56665543222 235789999999
Q ss_pred eEEEEEcccCcc---ccccCcccceeEEEEcCCCceE--EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 188 YVLITSMHRPYS---YKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 188 ~l~~~~~~~~~~---~~~~~~~~~~~l~~~d~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
.|+|++...+.. ..........+|+++++.++.. +.+...+... .....+.|+|||+. |++...
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~----------~~~~~~~~SpDg~~-l~~~~~ 252 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP----------KWMGGAELSDDGRY-VLLSIR 252 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT----------TCEEEEEECTTSCE-EEEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC----------eEEEEEEEcCCCCE-EEEEEE
Confidence 999998654310 0000112245799999986542 3333321100 00125789999985 555422
Q ss_pred ecCCCcccccCCcceEEeccCCCCCC------C--CceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEG------E--KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g------~--~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
. .. .....++++++ .+ + +.+.|....... ...|++||..|++.........+|+++|++++
T Consensus 253 ~-~~------~~~~~l~~~d~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 253 E-GC------DPVNRLWYCDL---QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp C-SS------SSCCEEEEEEG---GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred c-cC------CCccEEEEEEC---cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 1 11 11346788786 43 2 345555433222 34599999987776543334568999999874
Q ss_pred CC-CcEEEeecc----cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCce-e
Q 007620 335 DV-APRVLFDRV----FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-E 408 (595)
Q Consensus 335 ~~-~~~~l~~~~----~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~-~ 408 (595)
+. ..+.|+... +.. +.|+++ ..+++.....+ ...|+ .+++.+|+. +
T Consensus 322 ~~~~~~~l~~~~~~~~~~~---------~~~~~~-~~lv~~~~~~g--~~~l~----------------~~~~~~g~~~~ 373 (710)
T 2xdw_A 322 EESKWKVLVPEHEKDVLEW---------VACVRS-NFLVLCYLHDV--KNTLQ----------------LHDLATGALLK 373 (710)
T ss_dssp CGGGCEEEECCCSSCEEEE---------EEEETT-TEEEEEEEETT--EEEEE----------------EEETTTCCEEE
T ss_pred CcccceeccCCCCCCeEEE---------EEEEcC-CEEEEEEEECC--EEEEE----------------EEECCCCCEEE
Confidence 21 225554321 222 677744 45555554321 22343 456655653 3
Q ss_pred eeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCc--eeeEecCCCCCCCcCCCceEEEE
Q 007620 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK--SSQITNFPHPYPTLASLQKEMIK 486 (595)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~--~~~Lt~~~~~~~~~~~~~~e~v~ 486 (595)
.|... ...+.. .+++++++.++++.++...|+.+|++|+.+++ .+.|........+...+.+|.++
T Consensus 374 ~l~~~-----~~~v~~-------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~ 441 (710)
T 2xdw_A 374 IFPLE-----VGSVVG-------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIF 441 (710)
T ss_dssp EECCC-----SSEEEE-------EECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEE
T ss_pred ecCCC-----CceEEE-------EecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEE
Confidence 33211 011111 34677888999999999999999999998887 66676653222333334889999
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCC-chhHHHhc-cCeEEEe
Q 007620 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLA-RRFAVLA 560 (595)
Q Consensus 487 ~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~-~~~q~la~-~GY~Vl~ 560 (595)
|++.||.+|+++|++|.++++++++ |+||++|+ ++.......+ ...+.|++ +||+|+.
T Consensus 442 ~~~~dg~~i~~~~~~p~~~~~~~~~--P~vl~~hG--------------g~~~~~~~~~~~~~~~l~~~~G~~v~~ 501 (710)
T 2xdw_A 442 YPSKDGTKIPMFIVHKKGIKLDGSH--PAFLYGYG--------------GFNISITPNYSVSRLIFVRHMGGVLAV 501 (710)
T ss_dssp EECTTSCEEEEEEEEETTCCCSSCS--CEEEECCC--------------CTTCCCCCCCCHHHHHHHHHHCCEEEE
T ss_pred EEcCCCCEEEEEEEecCCCCCCCCc--cEEEEEcC--------------CCCCcCCCcccHHHHHHHHhCCcEEEE
Confidence 9999999999999999998665544 99999774 3321111112 23467888 9999999
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-23 Score=233.66 Aligned_cols=349 Identities=13% Similarity=0.071 Sum_probs=217.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....++|||||++|||...... .....|+++|+++|+..+.+. .. .....+.|+ ||+.|+|........
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G-----~~~~~i~v~dl~tg~~~~~~~-~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAG-----SDWREIHLMDVESKQPLETPL-KD----VKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSS-----CCEEEEEEEETTTCSEEEEEE-EE----EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEecCC-----CceEEEEEEECCCCCCCcccc-CC----ceeccEEEe-CCCEEEEEEecCccc
Confidence 3567899999999999887531 234789999999999766532 11 024689999 999999975431100
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC--CeeecCCC-C----eeeeeEEC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-A----VYTAVEPS 183 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g--~~~~lt~~-~----~~~~~~~S 183 (595)
+. ..+ .....+||+.++ ++ +.+.|... . ....+.||
T Consensus 199 ------------------~~------~~~------------~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 199 ------------------SE------LSA------------RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp ------------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred ------------------cc------ccc------------cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 00 000 002457888888 43 23444322 2 34578999
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
|||++|+++...... ..+++++|++++.
T Consensus 243 pDg~~l~~~~~~~~~---------~~~i~~~d~~~~~------------------------------------------- 270 (693)
T 3iuj_A 243 EDDRFLLISAANSTS---------GNRLYVKDLSQEN------------------------------------------- 270 (693)
T ss_dssp TTSCEEEEEEESSSS---------CCEEEEEETTSTT-------------------------------------------
T ss_pred CCCCEEEEEEccCCC---------CcEEEEEECCCCC-------------------------------------------
Confidence 999999998653211 1245555543221
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCC-CcEEEe
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLF 342 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~-~~~~l~ 342 (595)
++.+.|.........+ |+++|..|++..+.+..+.+|+.+|+++++. ..+.++
T Consensus 271 -------------------------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 271 -------------------------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp -------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred -------------------------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 0122222111111112 6777777666554333456999999988421 124454
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceee
Q 007620 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (595)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (595)
..... . +.|+++|+.|++...+.+ ...|+ .++++++..+.|.... ...+
T Consensus 325 ~~~~~--------~-~~~s~~g~~lv~~~~~~g--~~~l~----------------~~d~~g~~~~~l~~p~----~~~~ 373 (693)
T 3iuj_A 325 PERQQ--------V-LTVHSGSGYLFAEYMVDA--TARVE----------------QFDYEGKRVREVALPG----LGSV 373 (693)
T ss_dssp CCCSS--------C-EEEEEETTEEEEEEEETT--EEEEE----------------EECTTSCEEEEECCSS----SSEE
T ss_pred cCCCC--------E-EEEEEECCEEEEEEEECC--eeEEE----------------EEECCCCeeEEeecCC----CceE
Confidence 32211 1 378889998888765432 22333 4566544444442111 0111
Q ss_pred EEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcC
Q 007620 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502 (595)
Q Consensus 423 ~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P 502 (595)
.. .+++++++.+++..++...|+.+|.+|+.+++.+.|+..+.. .....+.+|.+++++.||.+|+++|++|
T Consensus 374 ~~-------~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~l~~p 445 (693)
T 3iuj_A 374 SG-------FNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYR 445 (693)
T ss_dssp EE-------CCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSS-CCGGGEEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ee-------eecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCC-cChhhCeeEEEEEecCCCcEEEEEEEec
Confidence 11 345678889999999999999999999988888888877533 3333348999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHHhccCeEEEe
Q 007620 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA 560 (595)
Q Consensus 503 ~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~la~~GY~Vl~ 560 (595)
.++++++ +.|+||++|++ +....... ....+.|+++||+|+.
T Consensus 446 ~~~~~~~--~~P~ll~~hGg--------------~~~~~~~~~~~~~~~l~~~G~~v~~ 488 (693)
T 3iuj_A 446 KGLKLDG--SNPTILYGYGG--------------FDVSLTPSFSVSVANWLDLGGVYAV 488 (693)
T ss_dssp SSCCCSS--CCCEEEECCCC--------------TTCCCCCCCCHHHHHHHHTTCEEEE
T ss_pred CCCCCCC--CccEEEEECCC--------------CCcCCCCccCHHHHHHHHCCCEEEE
Confidence 9887654 44999997743 22111111 2235799999999999
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=232.00 Aligned_cols=396 Identities=11% Similarity=0.039 Sum_probs=235.7
Q ss_pred EEccCCCEEEEEEecccccccCCCceEEEEEECC---CCceEecccCCCccc--cccccceEEecCCcEEEEEecCCCCC
Q 007620 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDICL--NAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~~--~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
..+|||++++|++.... .....||+++.. +++.++|++...... ...+..+.|||||++|+|....
T Consensus 113 ~p~pdG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~---- 183 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGL-----MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD---- 183 (741)
T ss_dssp CCEEETTEEEEEEECSS-----CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEE----
T ss_pred CCEEECCEEEEEEEcCC-----CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC----
Confidence 34599999999987531 225789999987 777777643321100 0135689999999999997421
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
.|. ...+|+++|+ +|+........ .+..++|||| +.|
T Consensus 184 -----------------~G~-----------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 184 -----------------GGS-----------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp -----------------TTC-----------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEE
T ss_pred -----------------CCC-----------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEE
Confidence 110 1247999999 56655442222 2247899999 999
Q ss_pred EEEEcccCcc-ccccCcccceeEEEEcCCCce--EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 190 LITSMHRPYS-YKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
+|++...+.. ..........+|+++++.++. .+.+...+... .....+.|||||+. |++... +..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~----------~~~~~~~~SpDG~~-l~~~~~-~~~ 290 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP----------KRGHGASVSSDGRW-VVITSS-EGT 290 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT----------TCEEEEEECTTSCE-EEEEEE-CTT
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC----------eEEEEEEECCCCCE-EEEEEE-ccC
Confidence 9998654310 000001124579999987654 23343322100 01235789999985 544422 110
Q ss_pred CcccccCCcceEEeccCCCCCCC--C-ceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGE--K-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~--~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
.....++++++ +++ + .+.|.........+ |+|||..|++.......+.+|+++|+++++.+.+.++.
T Consensus 291 ------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 291 ------DPVNTVHVARV---TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp ------CSCCEEEEEEE---ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred ------CCcceEEEEEC---CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 12347888886 544 4 56665433222233 56899887776543334678999999873102344442
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeE
Q 007620 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (595)
.... .+. .+.|+ +..+++.....+ ...|+ .++++++..+.|.... ...+.
T Consensus 361 ~~~~-~l~-----~~~~~--~~~lv~~~~~dg--~~~l~----------------~~~~~g~~~~~l~~~~----~~~v~ 410 (741)
T 1yr2_A 361 ESKD-NLE-----SVGIA--GNRLFASYIHDA--KSQVL----------------AFDLDGKPAGAVSLPG----IGSAS 410 (741)
T ss_dssp CCSS-EEE-----EEEEE--BTEEEEEEEETT--EEEEE----------------EEETTSCEEEECBCSS----SCEEE
T ss_pred CCCC-eEE-----EEEEE--CCEEEEEEEECC--EEEEE----------------EEeCCCCceeeccCCC----CeEEE
Confidence 2111 000 04454 445666654322 22343 3555333333332110 01111
Q ss_pred EeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCC
Q 007620 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPP 503 (595)
Q Consensus 424 ~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~ 503 (595)
. .+++++++.++++.++...|+.+|++|+.+++.+.|+.. ....+...+.+|.+.|++.||.+|+++|++|.
T Consensus 411 ~-------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~-~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~ 482 (741)
T 1yr2_A 411 G-------LSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPV-HLTFDPADFRVEQVFYPSKDGTKVPMFIVRRK 482 (741)
T ss_dssp E-------EECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCC-CCSSCGGGEEEEEEEEECTTSCEEEEEEEEET
T ss_pred E-------eecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecC-CCCCChhHCEEEEEEEEcCCCCEEEEEEEecC
Confidence 1 346788889999999999999999999988886666653 22223333489999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccC-CCCchhHHHhccCeEEEe
Q 007620 504 GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 504 ~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~-~~~~~~q~la~~GY~Vl~ 560 (595)
++ . +++ |+||++|++ +..... .+....+.|+++||+|+.
T Consensus 483 ~~-~-~~~--p~vl~~hGg--------------~~~~~~~~~~~~~~~l~~~G~~v~~ 522 (741)
T 1yr2_A 483 DA-K-GPL--PTLLYGYGG--------------FNVALTPWFSAGFMTWIDSGGAFAL 522 (741)
T ss_dssp TC-C-SCC--CEEEECCCC--------------TTCCCCCCCCHHHHHHHTTTCEEEE
T ss_pred CC-C-CCC--cEEEEECCC--------------CCccCCCCcCHHHHHHHHCCcEEEE
Confidence 86 2 334 999997743 321111 112345789999999999
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=226.39 Aligned_cols=342 Identities=13% Similarity=0.087 Sum_probs=205.2
Q ss_pred cccceEEc-cCCCEEEEEEecccccccCCCceEEEEEECCCC-ceEecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~S-PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
....++|| |||++|||+..... ....+||++|+++| +. ++..-. ...+.+.|||||+.|+|+..+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G-----~~~~~l~v~dl~~g~~~--l~~~~~----~~~~~~~WspDg~~l~y~~~d~- 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSG-----NEVYTIEFKRISDPSQT--IADKVS----GTNGEIVWGPDHTSLFYVTKDE- 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSS-----SSCEEEEEEETTCTTCC--CCCCEE----EECSCCEECSSTTEEEEEEECT-
T ss_pred EEeeeEecCCCCCEEEEEEeCCC-----CceEEEEEEECCCCCEe--CCcccc----CceeeEEEecCCCEEEEEEECC-
Confidence 35679999 99999999987531 23467999999998 62 221101 1246899999999999974210
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC-CC--eeec---CCCCeeeeeEEC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT--AKDF---GTPAVYTAVEPS 183 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~--~~~l---t~~~~~~~~~~S 183 (595)
.+ ...+||++++. ++ .+.+ ....+...+.||
T Consensus 243 -------------------~~------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 243 -------------------TL------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp -------------------TC------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred -------------------CC------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 00 12478888883 33 2333 223455678999
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
|||++|+++..... ..+|+++|++++.
T Consensus 280 pDg~~l~~~~~~~~----------~~~l~~~d~~~~~------------------------------------------- 306 (751)
T 2xe4_A 280 ADTNTLCIGSQSPE----------TAEVHLLDLRKGN------------------------------------------- 306 (751)
T ss_dssp TTSSEEEEEEECSS----------CEEEEEEESSSCT-------------------------------------------
T ss_pred CCCCEEEEEecCCC----------CceEEEEECCCCC-------------------------------------------
Confidence 99999999874321 2355555554321
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCc--eeccccCccccceeecCC---CcEEEEEEeec-ccceEEEEEeCCCCCCC
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDD---SLALVNETWYK-TSQTRTWLVCPGSKDVA 337 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~--~~l~~~~~~~~~~~wspD---g~~l~~~~~~~-~~~~~L~~~d~~~~~~~ 337 (595)
++. +.+.... ..+.|+++ |..|++....+ ..+.+|+.+|+++. ++
T Consensus 307 -------------------------~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~ 357 (751)
T 2xe4_A 307 -------------------------AHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP-SD 357 (751)
T ss_dssp -------------------------TCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST-TC
T ss_pred -------------------------CCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc-cc
Confidence 011 1111110 11223333 55555544332 35568999998752 12
Q ss_pred cEE-EeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeec-------CCCc-ee
Q 007620 338 PRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI-------NTGS-KE 408 (595)
Q Consensus 338 ~~~-l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~-------~~g~-~~ 408 (595)
.+. ++.......+ ..++.+++.|++.....+ ...++ .+++ .+++ .+
T Consensus 358 ~~~~li~~~~~~~l-------~~~~~~~~~lv~~~~~~g--~~~l~----------------~~dl~~~~~~~~~g~~~~ 412 (751)
T 2xe4_A 358 WSHVLVDHSEDVFM-------ESIAVRSNYLVVAGRRAG--LTRIW----------------TMMADSQDGVFKAGTGLR 412 (751)
T ss_dssp CCCEEECCCSSEEE-------EEEEECSSEEEEEEEETT--EEEEE----------------EEECCTTTSCCCTTTCCE
T ss_pred ceeeEECCCCCcEE-------EEEEEECCEEEEEEEeCC--EEEEE----------------EEecccccccccCCccce
Confidence 233 3321110000 223344667777765432 23343 3453 3444 44
Q ss_pred eeeecCccccceeeEEeeeCCCcccc--cccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCC-CCCcCCCceEEE
Q 007620 409 RIWESNREKYFETAVALVFGQGEEDI--NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP-YPTLASLQKEMI 485 (595)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~-~~~~~~~~~e~v 485 (595)
.|.-... .....+. ... +.+++.++++.++...|+++|.+++.+++.+.|+..+.+ ..+...+.+|.+
T Consensus 413 ~l~l~~~----~~~~~~~-----~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 483 (751)
T 2xe4_A 413 EVVMEEP----IFTVHLV-----ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERR 483 (751)
T ss_dssp ECCCCCS----SCEEEEC-----GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGGEEEEEE
T ss_pred EECCCCc----eeEEEec-----cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccceEEEEE
Confidence 4421110 0011110 011 457788999999999999999999988888889876432 233333478999
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCccc-CCCCchhHHHhccCeEEEe
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS-GMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~-~~~~~~~q~la~~GY~Vl~ 560 (595)
+|++.||.+|+++|++|+++++++++ |+||++|++ +.... ..+....+.||++||+|+.
T Consensus 484 ~~~s~dG~~i~~~l~~p~~~~~~~~~--P~vl~~HGg--------------~~~~~~~~~~~~~~~l~~~G~~v~~ 543 (751)
T 2xe4_A 484 FATAPDQTKIPLSVVYHKDLDMSQPQ--PCMLYGYGS--------------YGLSMDPQFSIQHLPYCDRGMIFAI 543 (751)
T ss_dssp EEECTTCCEEEEEEEEETTSCTTSCC--CEEEECCCC--------------TTCCCCCCCCGGGHHHHTTTCEEEE
T ss_pred EEECCCCcEEEEEEEcCCCCCCCCCc--cEEEEECCC--------------CCcCCCCcchHHHHHHHhCCcEEEE
Confidence 99999999999999999998765545 999997743 32111 1112345899999999999
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=193.45 Aligned_cols=351 Identities=11% Similarity=0.069 Sum_probs=205.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCCC---CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.+|+.... ++..+++|..... ..+.+|+|||||++|||.+.+ ++..+||++++++|+.+++|....
T Consensus 12 ~~~~~~~~----g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-------~g~~~l~~~d~~~g~~~~lt~~~~ 80 (388)
T 3pe7_A 12 DTYQDAST----GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF-------DGPWNYYLLDLNTQVATQLTEGRG 80 (388)
T ss_dssp EEEECTTT----CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTCEEEECCCSSC
T ss_pred eEEecCCC----CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC-------CCCceEEEEeCCCCceEEeeeCCC
Confidence 45654332 6678888854322 122349999999999999864 346799999999999999986553
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
. ....+.|||||+.|+|... ...|+++
T Consensus 81 ~----~~~~~~~spdg~~l~~~~~-------------------------------------------------~~~l~~~ 107 (388)
T 3pe7_A 81 D----NTFGGFLSPDDDALFYVKD-------------------------------------------------GRNLMRV 107 (388)
T ss_dssp B----CSSSCEECTTSSEEEEEET-------------------------------------------------TTEEEEE
T ss_pred C----CccceEEcCCCCEEEEEeC-------------------------------------------------CCeEEEE
Confidence 1 1226799999999999631 1357788
Q ss_pred cC-CCCeeecCC-C-Ceee--eeEECCCCCeEEEEEcccCccccc-c--------CcccceeEEEEcCCCceEEEeccCC
Q 007620 163 SL-DGTAKDFGT-P-AVYT--AVEPSPDQKYVLITSMHRPYSYKV-P--------CARFSQKVQVWTTDGKLVRELCDLP 228 (595)
Q Consensus 163 d~-~g~~~~lt~-~-~~~~--~~~~SpDg~~l~~~~~~~~~~~~~-~--------~~~~~~~l~~~d~~g~~~~~l~~~~ 228 (595)
|+ +|+.+.+.. + .... ...++|||+.|+............ . .......|+++|+.+++.+.+...+
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 187 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN 187 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence 88 556655532 2 2222 334599999988664322100000 0 0012368999999988887775432
Q ss_pred CCccCCccccccccCCCCceeec-CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--cccccee
Q 007620 229 PAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVS 305 (595)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wsp-dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--~~~~~~~ 305 (595)
. ....+.|+| ||+. |++... +..+ .....+++++. ++++.+.+.... .....+.
T Consensus 188 ~-------------~~~~~~~sp~dg~~-l~~~~~-~~~~-----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 188 Q-------------WLGHPIYRPYDDST-VAFCHE-GPHD-----LVDARMWLINE---DGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp S-------------CEEEEEEETTEEEE-EEEEEC-SCTT-----TSSCSEEEEET---TSCCCEESCCCCTTEEEEEEE
T ss_pred c-------------cccccEECCCCCCE-EEEEEe-cCCC-----CCcceEEEEeC---CCCceEEeeeCCCCcccccce
Confidence 1 123578999 9874 656532 1110 11346787786 566777776544 2356789
Q ss_pred ecCCCcEEEEEEeecc-cceEEEEEeCCCCCCCcEEEeeccc-ccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEE
Q 007620 306 WCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (595)
Q Consensus 306 wspDg~~l~~~~~~~~-~~~~L~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~ 383 (595)
|||||+.|++...... ....||++|++++ +.+.+..... ......+. ...|+|||+.|++...+.+ .+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~--~~~~spdg~~l~~~~~~~~-----~~- 314 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYD--GSLMVGDGSDAPVDVQDDS-----GY- 314 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTT--SSEEEEEECCC----------------
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCC--CCeEccCCCcceeEeeecc-----cc-
Confidence 9999998777653322 2235999999984 4555543211 00000111 1479999998887653210 00
Q ss_pred ecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeee-CCCcccccccCCEEEEEEecCCCcceEEEEeCCCC
Q 007620 384 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF-GQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (595)
Q Consensus 384 ~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~ 462 (595)
.......|+.+|+.+++.++|+..... +.....-.. ......||+||++|++..... ..+.||++++..+
T Consensus 315 ------~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 315 ------KIENDPFLYVFNMKNGTQHRVARHDTS--WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPES 385 (388)
T ss_dssp --------CCCCEEEEEETTTTEEEEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGG
T ss_pred ------ccCCCCEEEEEeccCCceEEeccccCc--ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChh
Confidence 001112344678888887777644320 000000000 001247899999999887554 4566999998654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-18 Score=196.36 Aligned_cols=368 Identities=14% Similarity=0.087 Sum_probs=220.8
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+||+.++. +|++++|+... ..+..++|||||++|||++....+ .+..+||++++++|+.++|+....
T Consensus 33 ~~l~~~~~~----gg~~~~lt~~~--~~v~~~~~SPDG~~la~~s~~~~~----~~~~~i~~~d~~~g~~~~lt~~~~-- 100 (1045)
T 1k32_A 33 DDLWEHDLK----SGSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGSS----LNTADLYFYNGENGEIKRITYFSG-- 100 (1045)
T ss_dssp TEEEEEETT----TCCEEEEECSS--SEEEEEEECTTSSEEEEEEEESTT----CCEEEEEEEETTTTEEEECCCCCE--
T ss_pred CcEEEEECC----CCcEEEeeeCC--CcccCeEECCCCCEEEEEEeeccC----CCCCeEEEEECCCCCeEEcccCCC--
Confidence 379999998 89999999543 358999999999999999865211 245799999999999999986553
Q ss_pred ccccc-------cceEEecCCcEEEEEecCCC---C--CCC-------CccccCCCCe---------eeecC--------
Q 007620 85 LNAVF-------GSFVWVNNSTLLIFTIPSSR---R--DPP-------KKTMVPLGPK---------IQSNE-------- 128 (595)
Q Consensus 85 ~~~~~-------~~~~Wspdg~~l~~~~~~~~---~--~~~-------~~~~~~~g~~---------~~~~~-------- 128 (595)
.+ ..+.|||||+ |+|...... . .+. ....+..++. +....
T Consensus 101 ---~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~ 176 (1045)
T 1k32_A 101 ---KSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHW 176 (1045)
T ss_dssp ---EEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTS
T ss_pred ---cccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCcccc
Confidence 34 6899999999 666543210 0 000 0000111100 00000
Q ss_pred ---ccccccccccccc-------c-cCc-------CCccceEEe----ecceEEEEcCCC-CeeecCCCCeeeeeEECCC
Q 007620 129 ---QKNIIISRMTDNL-------L-KDE-------YDESLFDYY----TTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPD 185 (595)
Q Consensus 129 ---~g~~~~~~~~~~~-------~-~~~-------~~~~~~~~~----~~~~l~~~d~~g-~~~~lt~~~~~~~~~~SpD 185 (595)
.+.. ....+... + ... +....+.+. ...+||.+++++ ..++|+.......++||||
T Consensus 177 ~~~~g~~-~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpD 255 (1045)
T 1k32_A 177 KGYRGGT-RGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTD 255 (1045)
T ss_dssp TTCCSTT-CCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEES
T ss_pred ccccCCC-cCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCC
Confidence 0000 00000000 0 000 000111111 235788888855 6777765543446799999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceee-cCCCeeEEEEEeec
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQD 264 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws-pdg~~~l~~~~~~d 264 (595)
|++|++... ..|++||++++....+...... ..+. ..........+.|+ |||+. |++..
T Consensus 256 G~~la~~~~--------------~~i~~~d~~~~~l~~l~~~~~~-~~~~-~~~~~~~v~~~~~S~pdG~~-la~~~--- 315 (1045)
T 1k32_A 256 GRRILFSKG--------------GSIYIFNPDTEKIEKIEIGDLE-SPED-RIISIPSKFAEDFSPLDGDL-IAFVS--- 315 (1045)
T ss_dssp SSCEEEEET--------------TEEEEECTTTCCEEECCCCCCC-BCCS-EEEECGGGGEEEEEECGGGC-EEEEE---
T ss_pred CCEEEEEeC--------------CEEEEecCCceEeeeeccCccc-cccc-ccccccccceeeecCCCCCE-EEEEE---
Confidence 999999842 3789999876655544321100 0000 00000123468999 99985 55541
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCceeccccCc-cccceeecCCCcEEEEEEeecccceEEE-EEeCCCCCCCcEEEe
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTW-LVCPGSKDVAPRVLF 342 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~L~-~~d~~~~~~~~~~l~ 342 (595)
+..+++++. .+++...+..... ....+.|+ ||..+++... ..+|| ++++++ ++.+.+.
T Consensus 316 ----------~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~--~~~~~l~ 375 (1045)
T 1k32_A 316 ----------RGQAFIQDV---SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRT--GKAEKFE 375 (1045)
T ss_dssp ----------TTEEEEECT---TSSBEEECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTT--CCEEECC
T ss_pred ----------cCEEEEEcC---CCCceEEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCC--CCceEec
Confidence 245777775 4456666655554 67789999 9988877652 34899 999987 3445554
Q ss_pred ec--ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccce
Q 007620 343 DR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (595)
Q Consensus 343 ~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (595)
.. .+.. +.|+|||+.|++... ...++ .+|+++++...+......
T Consensus 376 ~~~~~~~~---------~~~SpDG~~la~~~~-----~~~v~----------------~~d~~tg~~~~~~~~~~~---- 421 (1045)
T 1k32_A 376 ENLGNVFA---------MGVDRNGKFAVVAND-----RFEIM----------------TVDLETGKPTVIERSREA---- 421 (1045)
T ss_dssp CCCCSEEE---------EEECTTSSEEEEEET-----TSEEE----------------EEETTTCCEEEEEECSSS----
T ss_pred CCccceee---------eEECCCCCEEEEECC-----CCeEE----------------EEECCCCceEEeccCCCC----
Confidence 22 1222 899999999987653 12333 468888887766533211
Q ss_pred eeEEeeeCCCcccccccCCEEEEEEecC------CCcceEEEEeCCCCceeeEecC
Q 007620 421 TAVALVFGQGEEDINLNQLKILTSKESK------TEITQYHILSWPLKKSSQITNF 470 (595)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~l~~~~~s~------~~p~~l~~~d~~~~~~~~Lt~~ 470 (595)
.+. ...|||||+++++..... ..+..+++.|+.+++.++|+..
T Consensus 422 ~v~-------~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 422 MIT-------DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp CCC-------CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred Ccc-------ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 111 246899999998877543 4567899999988877677654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-17 Score=183.85 Aligned_cols=324 Identities=14% Similarity=0.167 Sum_probs=194.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc------------------c--ccccc
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL------------------N--AVFGS 91 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~------------------~--~~~~~ 91 (595)
.+..++|||||++|||.+..+.. .....||++++++|+.++++....... . ..+..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~----~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSD----RNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSC----TTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCceEecCCCEEEEEeccCCC----CcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 47789999999999998863110 124689999999999888865432100 0 12568
Q ss_pred eEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC---C
Q 007620 92 FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG---T 167 (595)
Q Consensus 92 ~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g---~ 167 (595)
+.|||||+.|++.. ...|+++++ ++ +
T Consensus 114 ~~~SpDg~~l~~~~--------------------------------------------------~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 114 YQWSPDAQRLLFPL--------------------------------------------------GGELYLYDLKQEGKAA 143 (741)
T ss_dssp CEECTTSSEEEEEE--------------------------------------------------TTEEEEEESSSCSTTS
T ss_pred eEECCCCCEEEEEe--------------------------------------------------CCcEEEEECCCCCcce
Confidence 99999999999862 135778888 55 5
Q ss_pred eeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc------
Q 007620 168 AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV------ 240 (595)
Q Consensus 168 ~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~------ 240 (595)
.++|+.. .....++|||||++|+|... ..|++||+.+++.+.+....... . .++.
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~--------------~~i~~~d~~~g~~~~~~~~~~~~---~-~~g~~~~v~~ 205 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRG--------------RNLWVIDLASGRQMQLTADGSTT---I-GNGIAEFVAD 205 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEET--------------TEEEEEETTTTEEEECCCCCCSS---E-EESCCCHHHH
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeC--------------CcEEEEecCCCCEEEeccCCccc---e-eccccceeee
Confidence 6667654 34568999999999999863 26999999988887775432110 0 0000
Q ss_pred --ccCCCCceeecCCCeeEEEEEeecCCCccc----------------------ccCCcceEEeccCCCCCC-CCceecc
Q 007620 241 --REGMRSISWRADKPSTLYWVEAQDRGDANV----------------------EVSPRDIIYTQPAEPAEG-EKPEILH 295 (595)
Q Consensus 241 --~~~~~~~~wspdg~~~l~~~~~~d~~~~~~----------------------~~~~~~~~~~~d~~~~~g-~~~~~l~ 295 (595)
......+.|||||+. |++... +.+.... .......++++|+ .+ ++...+.
T Consensus 206 ~~~~~~~~~~~SpDg~~-l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~ 280 (741)
T 2ecf_A 206 EEMDRHTGYWWAPDDSA-IAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---AEQAQTQWID 280 (741)
T ss_dssp HHSCCCCSEEECTTSSC-EEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---STTCCCEEEC
T ss_pred eccccccceEECCCCCE-EEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---CCCCceEEec
Confidence 000246899999985 655532 2211000 0011226778886 55 5665544
Q ss_pred c---cCccccceeecCCCcEEEEEEee-cccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 296 K---LDLRFRSVSWCDDSLALVNETWY-KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 296 ~---~~~~~~~~~wspDg~~l~~~~~~-~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ....+..+.| |||+.|++.... ......|+++|+.++ +.+.++.......+. ....+.|++||+ +++..
T Consensus 281 ~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~--~~~~~~~spdg~-~~~~~ 354 (741)
T 2ecf_A 281 LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVP--LHNSLRFLDDGS-ILWSS 354 (741)
T ss_dssp CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCC--CCSCCEECTTSC-EEEEE
T ss_pred CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCC--cCCceEECCCCe-EEEEe
Confidence 2 2334678999 999987765432 224568999999884 445554321110000 001278999999 44444
Q ss_pred eecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCC-
Q 007620 372 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTE- 450 (595)
Q Consensus 372 ~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~- 450 (595)
... ....|| .+++.++ .+.|+.... .+..+ ..|++|++.+++.... ..
T Consensus 355 ~~~--g~~~l~----------------~~~~~~~-~~~l~~~~~-----~v~~~------~~~s~dg~~l~~~~~~-~~~ 403 (741)
T 2ecf_A 355 ERT--GFQHLY----------------RIDSKGK-AAALTHGNW-----SVDEL------LAVDEKAGLAYFRAGI-ESA 403 (741)
T ss_dssp CTT--SSCEEE----------------EECSSSC-EEESCCSSS-----CEEEE------EEEETTTTEEEEEECS-SCT
T ss_pred cCC--CccEEE----------------EEcCCCC-eeeeeecce-----EEEeE------eEEeCCCCEEEEEEeC-CCC
Confidence 322 123454 4555433 444433211 11111 2478999988887653 33
Q ss_pred -cceEEEEeCCCCceeeEec
Q 007620 451 -ITQYHILSWPLKKSSQITN 469 (595)
Q Consensus 451 -p~~l~~~d~~~~~~~~Lt~ 469 (595)
-..||.++..++..++|+.
T Consensus 404 ~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 404 RESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp TCBEEEEEETTCCCCEECCC
T ss_pred ceEEEEEEEcCCCCeeeccc
Confidence 3457777765555677765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-18 Score=176.29 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=174.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|+++|+. ++..+.++... ..+..++|||||++|||.+.. .+...|+++|+++|+.++++....
T Consensus 159 ~~i~i~d~~----g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~-------~~~~~i~~~d~~tg~~~~l~~~~~-- 223 (415)
T 2hqs_A 159 YELRVSDYD----GYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR-- 223 (415)
T ss_dssp EEEEEEETT----SCSCEEEEEES--SCEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSS--
T ss_pred ceEEEEcCC----CCCCEEEeCCC--CcceeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCcEEEeecCCC--
Confidence 579999996 77788887533 358899999999999998853 245789999999999888875543
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|||||+.|+|.... + ...+||++|+
T Consensus 224 ---~~~~~~~spdg~~la~~~~~---------------------~-------------------------g~~~i~~~d~ 254 (415)
T 2hqs_A 224 ---HNGAPAFSPDGSKLAFALSK---------------------T-------------------------GSLNLYVMDL 254 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECT---------------------T-------------------------SSCEEEEEET
T ss_pred ---cccCEEEcCCCCEEEEEEec---------------------C-------------------------CCceEEEEEC
Confidence 46789999999999986321 0 1246889999
Q ss_pred -CCCeeecCCCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+++.+.|+... ....++|||||++|++.+.... ...|+++|+.+++.+.+.... .
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~~-------------~ 311 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------S 311 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSS-------------S
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecCC-------------C
Confidence 56777776543 5568999999999999975321 247999999988766654321 1
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+|||+. |++... +. ....++++++ .+++.+.+.... ....+.|+|||..|++.... .+
T Consensus 312 ~~~~~~~spdG~~-l~~~~~-~~--------g~~~i~~~d~---~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~ 376 (415)
T 2hqs_A 312 QNQDADVSSDGKF-MVMVSS-NG--------GQQHIAKQDL---ATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQ-GM 376 (415)
T ss_dssp EEEEEEECTTSSE-EEEEEE-CS--------SCEEEEEEET---TTCCEEECCCSS-SCEEEEECTTSSEEEEEEEE-TT
T ss_pred cccCeEECCCCCE-EEEEEC-cC--------CceEEEEEEC---CCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcC-CC
Confidence 1235889999984 555421 11 1246788886 555666666543 67789999999988776532 34
Q ss_pred ceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCC
Q 007620 323 QTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTST 363 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~d 363 (595)
...||++|+++ +..+.|.. ..+.+ ++|+|.
T Consensus 377 ~~~l~~~d~~g--~~~~~l~~~~~~v~~---------~~~~~~ 408 (415)
T 2hqs_A 377 GSVLNLVSTDG--RFKARLPATDGQVKF---------PAWSPY 408 (415)
T ss_dssp EEEEEEEETTS--CCEEECCCSSSEEEE---------EEECCC
T ss_pred ccEEEEEECCC--CcEEEeeCCCCCCcC---------Cccccc
Confidence 55899999987 34555543 23444 778774
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-18 Score=173.72 Aligned_cols=339 Identities=9% Similarity=0.049 Sum_probs=191.0
Q ss_pred CCCceeeecCCCC---CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEE
Q 007620 18 LGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW 94 (595)
Q Consensus 18 ~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W 94 (595)
+...++|+..... ..+..++|||||++|||+... ++..+||++++++++.++++..... ....+.|
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~----~~~~~~~ 88 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGD----NTFGGFI 88 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCB----CTTTCEE
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCC----ccccceE
Confidence 4456777732211 126789999999999999864 3457899999999999998764431 1234899
Q ss_pred ecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC
Q 007620 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (595)
Q Consensus 95 spdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~ 173 (595)
||||+.|+|.... .+|+++++ .++.++++.
T Consensus 89 spdg~~l~~~~~~-------------------------------------------------~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 89 STDERAFFYVKNE-------------------------------------------------LNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp CTTSSEEEEEETT-------------------------------------------------TEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEEcC-------------------------------------------------CcEEEEECCCCCcEEEEe
Confidence 9999999997321 13566666 334444432
Q ss_pred C--Ceee-------------------eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCcc
Q 007620 174 P--AVYT-------------------AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (595)
Q Consensus 174 ~--~~~~-------------------~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~ 232 (595)
. .... ...|||||++|++...... .....|+++|+.+++.+.+....
T Consensus 120 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~--------~~~~~l~~~d~~~g~~~~~~~~~---- 187 (396)
T 3c5m_A 120 VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT--------NPTCRLIKVDIETGELEVIHQDT---- 187 (396)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT--------CCCEEEEEEETTTCCEEEEEEES----
T ss_pred cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC--------CCcceEEEEECCCCcEEeeccCC----
Confidence 1 1000 1456677766655431000 01358999999988777665321
Q ss_pred CCccccccccCCCCceeec-CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc--CccccceeecCC
Q 007620 233 IPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDD 309 (595)
Q Consensus 233 ~~~~~~~~~~~~~~~~wsp-dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspD 309 (595)
.....+.|+| |++ .|+++.. ... ......|++++. ++++.+.+... ......+.||||
T Consensus 188 ---------~~~~~~~~sp~dg~-~l~~~~~--~~~----~~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 188 ---------AWLGHPIYRPFDDS-TVGFCHE--GPH----DLVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp ---------SCEEEEEEETTEEE-EEEEEEC--SCS----SSCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTT
T ss_pred ---------cccccceECCCCCC-EEEEEec--CCC----CCCCceEEEEEC---CCCceeEeeccCCCccccceEECCC
Confidence 1123578999 665 3666521 110 011135777776 55566666653 224567899999
Q ss_pred CcEEEEEEeecc-cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCC-CCCEEEEEeeecCCcccEEEEecCC
Q 007620 310 SLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRG 387 (595)
Q Consensus 310 g~~l~~~~~~~~-~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~l~~~~~g 387 (595)
|+.|++...... ....|+++|+.+ ++.+.+....... +.|++ ||+.+++.... . + +.....+
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~---------~~~s~~dg~~l~~~~~~-~-p---~~~~~~~ 312 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPET--LENEEVMVMPPCS---------HLMSNFDGSLMVGDGCD-A-P---VDVADAD 312 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTT--CCEEEEEECCSEE---------EEEECSSSSEEEEEECC-C------------
T ss_pred CCEEEEEecCCCCccceEEEEECCC--CCeEEeeeCCCCC---------CCccCCCCceEEEecCC-c-c---eeecccc
Confidence 997776643221 223599999988 3445554322111 68899 99976654311 0 0 0000000
Q ss_pred CCCCCCcceeEeeecCCCceeeeeecCccccceee-EEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceee
Q 007620 388 FTPEGNIPFLDLFDINTGSKERIWESNREKYFETA-VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (595)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~ 466 (595)
.........++.+|+.+++.++|...... .... ...........|++|++.|++..... ..++||++++.+++.+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTS--WDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKHL 389 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC--
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCc--cccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccccccc
Confidence 00001122345678877877666543210 0000 00000001246899999998887654 46679999987765443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=184.80 Aligned_cols=332 Identities=11% Similarity=0.043 Sum_probs=194.7
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
...++|||||+.|+. . ...|+++++++|+.+++....... ......++.|||||+.|+|....
T Consensus 19 ~~~~~w~~dg~~~~~-~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~---- 82 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK-Q-----------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---- 82 (740)
T ss_dssp CCCEEECSSSEEEEE-E-----------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE----
T ss_pred ccccEECCCCcEEEE-c-----------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC----
Confidence 558999999975544 2 147899999999877775443211 11112348999999999996321
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC-CCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-PAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~-~~~~~~~~~SpDg~~l 189 (595)
. ..+ .+. ....+|++|+ +|+.++|+. ......++|||||++|
T Consensus 83 ------------------~-----~~~------r~~-------~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~l 126 (740)
T 4a5s_A 83 ------------------V-----KQW------RHS-------YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKL 126 (740)
T ss_dssp ------------------E-----ECS------SSC-------EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCE
T ss_pred ------------------e-----eeE------EEc-------cceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEE
Confidence 0 000 000 2467899999 667778875 3456789999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc---------cCCCCceeecCCCeeEEEE
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR---------EGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~wspdg~~~l~~~ 260 (595)
+|+.. .+|+++++.++..++|+....... .+++.. ...+.+.|||||+. |++.
T Consensus 127 a~~~~--------------~~i~~~~~~~~~~~~lt~~g~~~~---~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~ 188 (740)
T 4a5s_A 127 AYVWN--------------NDIYVKIEPNLPSYRITWTGKEDI---IYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYA 188 (740)
T ss_dssp EEEET--------------TEEEEESSTTSCCEECCSCCBTTT---EEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEE
T ss_pred EEEEC--------------CeEEEEECCCCceEEEcCCCCccc---eecCcccccccchhcCCCcceEECCCCCE-EEEE
Confidence 99963 279999999888888764321100 011110 11235889999985 6665
Q ss_pred EeecCCCcccc------------------------cCCcceEEeccCCCCCC---C---Cceeccc------cCccccce
Q 007620 261 EAQDRGDANVE------------------------VSPRDIIYTQPAEPAEG---E---KPEILHK------LDLRFRSV 304 (595)
Q Consensus 261 ~~~d~~~~~~~------------------------~~~~~~~~~~d~~~~~g---~---~~~~l~~------~~~~~~~~ 304 (595)
...+..-.... ......++++++ ++ + +...+.. ....+..+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT---DSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET---TSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC---CCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 43222110000 011125778886 54 4 3444432 33346789
Q ss_pred eecCCCcEEEEEEeecccceEEEEEeCCCCCC-----CcEEEe-ecccccccCCCCCCCeeeCCCCCEEE-EEeeecCCc
Q 007620 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-----APRVLF-DRVFENVYSDPGSPMMTRTSTGTNVI-AKIKKENDE 377 (595)
Q Consensus 305 ~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~-----~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~-~~~~~~~~~ 377 (595)
.|||||+.+++..........|+++|+++++. ..+.+. +..-. .+.......+.|+|||+.++ +..... .
T Consensus 266 ~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~-~v~~~~~~~p~fspDG~~l~~~~s~~~--G 342 (740)
T 4a5s_A 266 TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG-WVGRFRPSEPHFTLDGNSFYKIISNEE--G 342 (740)
T ss_dssp EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS-CSSSSSCCCCEECTTSSEEEEEEECTT--S
T ss_pred EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc-eEccCcCCCceEcCCCCEEEEEEEcCC--C
Confidence 99999987665543333456799999988420 022221 11110 00000001278999999887 443322 1
Q ss_pred ccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEec---CCCcceE
Q 007620 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQY 454 (595)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s---~~~p~~l 454 (595)
...|| .+|+.+++.++|+..... +..+ +++|++.++|.... ...-..|
T Consensus 343 ~~~l~----------------~~~~~~~~~~~lT~g~~~-----v~~~--------~~~d~~~i~f~~~~~~~~~~~~~l 393 (740)
T 4a5s_A 343 YRHIC----------------YFQIDKKDCTFITKGTWE-----VIGI--------EALTSDYLYYISNEYKGMPGGRNL 393 (740)
T ss_dssp CEEEE----------------EEETTCSSCEESCCSSSC-----EEEE--------EEECSSEEEEEESCGGGCTTCBEE
T ss_pred ceEEE----------------EEECCCCceEecccCCEE-----EEEE--------EEEeCCEEEEEEecCCCCCceeEE
Confidence 23444 567777777788754321 1111 23467888888754 1223578
Q ss_pred EEEeCCCCcee-eEec
Q 007620 455 HILSWPLKKSS-QITN 469 (595)
Q Consensus 455 ~~~d~~~~~~~-~Lt~ 469 (595)
|.+++.+++.+ +||.
T Consensus 394 y~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 394 YKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEETTEEEEEEESST
T ss_pred EEEECCCCCcceeecc
Confidence 99998766554 6773
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-16 Score=153.00 Aligned_cols=262 Identities=12% Similarity=0.042 Sum_probs=174.9
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC-CceEecccCCC
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPD 82 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~ 82 (595)
...|+++|+. +++.+++.... ..+..++|||||++||+.. ...|+++++++ ++..+++....
T Consensus 21 ~~~i~~~d~~----~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 21 RSSIEIFNIR----TRKMRVVWQTP--ELFEAPNWSPDGKYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CEEEEEEETT----TTEEEEEEEES--SCCEEEEECTTSSEEEEEE-----------TTEEEEEESSSCCSCEECCCTTC
T ss_pred ceeEEEEeCC----CCceeeeccCC--cceEeeEECCCCCEEEEEc-----------CCeEEEEeCCCCCCceEeccccc
Confidence 4579999998 78888777543 3588999999999999864 24799999999 88887764332
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
. ..+..+.|+|||+.|++..... + ...+||.+
T Consensus 84 ~---~~~~~~~~spdg~~l~~~~~~~--------------------------------------~-------~~~~l~~~ 115 (297)
T 2ojh_A 84 T---ICNNDHGISPDGALYAISDKVE--------------------------------------F-------GKSAIYLL 115 (297)
T ss_dssp C---CBCSCCEECTTSSEEEEEECTT--------------------------------------T-------SSCEEEEE
T ss_pred c---ccccceEECCCCCEEEEEEeCC--------------------------------------C-------CcceEEEE
Confidence 1 1456899999999998863210 0 13578888
Q ss_pred cC-CCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 163 SL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 163 d~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
++ .++.+.+........+.|||||++|+++..... ...||.+++.++..+.+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~------------- 172 (297)
T 2ojh_A 116 PSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGE------------- 172 (297)
T ss_dssp ETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSS-------------
T ss_pred ECCCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCC-------------
Confidence 88 456777765554567899999999998765432 236788888877776665432
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
.....+.|+|||+. |++....+ ....++.++. .++..+.+.........+.|+|||+.|++......
T Consensus 173 ~~~~~~~~s~dg~~-l~~~~~~~---------~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 173 GRNDGPDYSPDGRW-IYFNSSRT---------GQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp SCEEEEEECTTSSE-EEEEECTT---------SSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred CccccceECCCCCE-EEEEecCC---------CCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence 11245889999984 44431111 1235666664 44456666655556677999999998776643211
Q ss_pred -------cceEEEEEeCCCCCCCcEEEeecc-cccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 322 -------SQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 322 -------~~~~L~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
....|+++|+.++ +.+.+.... ..... ..+.|+|||+.|++...+
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~-----~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTM-----NSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTS-----CSCCBCTTSSEEEEEEEC
T ss_pred CCcccccCceEEEEEecCCC--CceeeeccCCCCccc-----ccceECCCCCEEEEEEec
Confidence 2357999999884 445443210 00001 127899999998887643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=161.77 Aligned_cols=309 Identities=9% Similarity=0.012 Sum_probs=189.1
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
..++|+....+++.++||..........+..+.|||||+.|+|.... +
T Consensus 10 ~~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---------------------~----------- 57 (388)
T 3pe7_A 10 TFDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF---------------------D----------- 57 (388)
T ss_dssp CCEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---------------------T-----------
T ss_pred cceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC---------------------C-----------
Confidence 46788866666778999865531111122348999999999997421 0
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCeeecCCCCe--eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV--YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~~--~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
...+||++++ +|+.++++.... ...+.|||||++|+|.... ..|+++|+.
T Consensus 58 --------------g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-------------~~l~~~d~~ 110 (388)
T 3pe7_A 58 --------------GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-------------RNLMRVDLA 110 (388)
T ss_dssp --------------SSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-------------TEEEEEETT
T ss_pred --------------CCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-------------CeEEEEECC
Confidence 1347999999 568888876532 2257899999999999742 379999999
Q ss_pred CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc-----------cccCCcceEEeccCCCC
Q 007620 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN-----------VEVSPRDIIYTQPAEPA 286 (595)
Q Consensus 218 g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~-----------~~~~~~~~~~~~d~~~~ 286 (595)
+++.+.+...+.... .......++|++. ++.+.. +..+.. ........++++++
T Consensus 111 ~g~~~~~~~~~~~~~----------~~~~~~~~~dg~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--- 175 (388)
T 3pe7_A 111 TLEENVVYQVPAEWV----------GYGTWVANSDCTK-LVGIEI-RREDWVPLTDWKKFHEFYFTKPCCRLMRVDL--- 175 (388)
T ss_dssp TCCEEEEEECCTTEE----------EEEEEEECTTSSE-EEEEEE-EGGGCCCCCSHHHHHHHGGGCCCEEEEEEET---
T ss_pred CCcceeeeechhhcc----------cccceeECCCCCe-eccccc-cCcccccccccchhhhhhccCCcceEEEEEC---
Confidence 888777765431100 0001233788874 333321 111100 00123357888887
Q ss_pred CCCCceeccccCccccceeecC-CCcEEEEEEeec--ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCC
Q 007620 287 EGEKPEILHKLDLRFRSVSWCD-DSLALVNETWYK--TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST 363 (595)
Q Consensus 287 ~g~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~--~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d 363 (595)
.+++.+.+......+..+.||| ||+.|++..... ....+||++|+++ ++.+.|.......... .+.|+||
T Consensus 176 ~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~-----~~~~spd 248 (388)
T 3pe7_A 176 KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCT-----HEFWVPD 248 (388)
T ss_dssp TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEE-----EEEECTT
T ss_pred CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccc-----cceECCC
Confidence 5567777776666678899999 999887765321 1245899999987 4556665332100000 1789999
Q ss_pred CCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEE
Q 007620 364 GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILT 443 (595)
Q Consensus 364 g~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~ 443 (595)
|+.|++.....+.....+ +.+|+++|+.+.++.... ............|++||+.+++
T Consensus 249 g~~l~~~~~~~~~~~~~l----------------~~~d~~~g~~~~l~~~~~------~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFI----------------YSADPETLENRQLTSMPA------CSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp SSCEEEEEEETTCCCEEE----------------EEECTTTCCEEEEEEECC------EEEEEECTTSSEEEEEECCC--
T ss_pred CCEEEEEecCCCCCcceE----------------EEEecCCCceEEEEcCCC------ceeeeecCCCCeEccCCCccee
Confidence 998877765432111123 357888888777654321 0000000112368999998887
Q ss_pred EEec-----CCCcceEEEEeCCCCceeeEecCCC
Q 007620 444 SKES-----KTEITQYHILSWPLKKSSQITNFPH 472 (595)
Q Consensus 444 ~~~s-----~~~p~~l~~~d~~~~~~~~Lt~~~~ 472 (595)
.... .....+||++++.+++.++|+....
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred EeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 6542 2556789999999999999997753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-16 Score=157.43 Aligned_cols=310 Identities=13% Similarity=0.116 Sum_probs=186.2
Q ss_pred CCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
+.....+..|++ ||++|||+........ .....+||++++++++.++| . .+..+.|||||+.|+|...
T Consensus 11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l---~------~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 11 FAKFAYLSDPRT--KGELVAYVLTKANLKD-NKYENTIVIENLKNNARRFI---E------NATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp CCCSCEEEEEEE--ETTEEEEEEEEEETTT-TEEEEEEEEEETTTCCEEEE---E------SCEEEEECTTSSEEEEEEE
T ss_pred ceeeEEcccceE--CCcEEEEEEeecCccc-CCccceEEEEeCCCCceEEc---c------cCCCeEECCCCCEEEEEEe
Confidence 334446788999 9999999875421000 02357899999999998887 1 3568999999999999732
Q ss_pred CCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCCeeeeeEECCC
Q 007620 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPD 185 (595)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~~~~~~~~SpD 185 (595)
.. + . ...+||++++ .|+.++++.......+.||||
T Consensus 79 ~~---------------------~-----------------~------~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspd 114 (347)
T 2gop_A 79 NE---------------------E-----------------K------KVSEIWVADLETLSSKKILEAKNIRSLEWNED 114 (347)
T ss_dssp ET---------------------T-----------------T------TEEEEEEEETTTTEEEEEEEESEEEEEEECTT
T ss_pred cc---------------------C-----------------C------CcceEEEEECCCCceEEEEcCCCccceeECCC
Confidence 10 0 0 1357999999 457777754322668999999
Q ss_pred CCeEEEEEcccCccc------cccCc--------ccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceee
Q 007620 186 QKYVLITSMHRPYSY------KVPCA--------RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWR 250 (595)
Q Consensus 186 g~~l~~~~~~~~~~~------~~~~~--------~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (595)
|++|+|....++... .+++. .....|+++|+.+++. +.+.. + . ...+.|+
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~-------------~~~~~~s 179 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R-------------FSSGIWH 179 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T-------------TCEEEEE
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C-------------cccccCC
Confidence 999999975311000 00000 0135799999998877 66654 2 1 2468899
Q ss_pred cCCCeeEEEEEeecCCCcccccCC-cceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc----cceE
Q 007620 251 ADKPSTLYWVEAQDRGDANVEVSP-RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTR 325 (595)
Q Consensus 251 pdg~~~l~~~~~~d~~~~~~~~~~-~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~----~~~~ 325 (595)
||| +++....+.... ... ...++.++ +++.+.+... ... ..+||||+.|++...... ...+
T Consensus 180 pdg---~~~~~~~~~~~~---~~~~~~~l~~~d-----~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 180 RDK---IVVNVPHREIIP---QYFKFWDIYIWE-----DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp TTE---EEEEEECCCSSC---CSSCCEEEEEEE-----TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCE
T ss_pred CCe---EEEEEecccccc---cccccccEEEeC-----CCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccce
Confidence 998 444422221100 001 23566655 2466666654 333 334999998776643211 2458
Q ss_pred EEEEeCCCCCCCcEEEeec---ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeec
Q 007620 326 TWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (595)
Q Consensus 326 L~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (595)
||++| + ++.+.++.. .+.. .+.|+ || +++.....+ ...| + ++
T Consensus 246 l~~~d--~--~~~~~l~~~~~~~~~~--------~~~~s-dg--~~~~~~~~~--~~~l----------------~-~~- 290 (347)
T 2gop_A 246 LYIYD--G--KEVMGILDEVDRGVGQ--------AKIKD-GK--VYFTLFEEG--SVNL----------------Y-IW- 290 (347)
T ss_dssp EEEEC--S--SCEEESSTTCCSEEEE--------EEEET-TE--EEEEEEETT--EEEE----------------E-EE-
T ss_pred EEEEC--C--CceEeccccCCcccCC--------ccEEc-Cc--EEEEEecCC--cEEE----------------E-Ec-
Confidence 99999 4 344555422 1211 16788 87 555544321 2233 3 34
Q ss_pred CCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCC
Q 007620 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYP 475 (595)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~ 475 (595)
+|+...++... ..+.. ..+++ .++++.++...|++||.++ ++.++||..|..++
T Consensus 291 -~g~~~~~~~~~-----~~v~~-------~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~~l 344 (347)
T 2gop_A 291 -DGEIKPIAKGR-----HWIMG-------FDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDPIF 344 (347)
T ss_dssp -SSSEEEEECSS-----SEEEE-------EEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTSTTT
T ss_pred -CCceEEEecCC-----CeEEe-------eeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHhHH
Confidence 35555554321 11111 23454 5788888999999999998 67889999976543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-16 Score=161.35 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=158.3
Q ss_pred CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCC
Q 007620 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (595)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~ 120 (595)
.+++|+|++..... +....|+++|++++..+.++.... .+..+.|||||+.|++...+
T Consensus 142 ~~~~l~~~s~~~~~----~~~~~i~i~d~~g~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~------------- 199 (415)
T 2hqs_A 142 FRTRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFE------------- 199 (415)
T ss_dssp TTCEEEEEEECSSS----SCCEEEEEEETTSCSCEEEEEESS-----CEEEEEECTTSSEEEEEECT-------------
T ss_pred CCCEEEEEEecCCC----CccceEEEEcCCCCCCEEEeCCCC-----cceeeEEcCCCCEEEEEEec-------------
Confidence 48899999864210 112799999999888888875543 46789999999999997321
Q ss_pred CCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCc
Q 007620 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (595)
Q Consensus 121 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~ 198 (595)
+ ....|+++|+ +|+.+.+... .....++|||||++|+|+.....
T Consensus 200 ---------~------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g- 245 (415)
T 2hqs_A 200 ---------S------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG- 245 (415)
T ss_dssp ---------T------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS-
T ss_pred ---------C------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC-
Confidence 0 1246888898 6677666543 35568999999999998865322
Q ss_pred cccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceE
Q 007620 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (595)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~ 278 (595)
...|++||+.+++.+.+..... ....+.|+|||+. |++... +. ....+
T Consensus 246 ---------~~~i~~~d~~~~~~~~l~~~~~-------------~~~~~~~spdg~~-l~~~s~-~~--------g~~~i 293 (415)
T 2hqs_A 246 ---------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQN-LAFTSD-QA--------GRPQV 293 (415)
T ss_dssp ---------SCEEEEEETTTCCEEECCCCSS-------------CEEEEEECTTSSE-EEEEEC-TT--------SSCEE
T ss_pred ---------CceEEEEECCCCCEEeCcCCCC-------------cccceEECCCCCE-EEEEEC-CC--------CCcEE
Confidence 2479999999887777654321 1235899999984 555421 11 12368
Q ss_pred EeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc-cccccCCCCCCC
Q 007620 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPM 357 (595)
Q Consensus 279 ~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 357 (595)
+++++ .+++.+.+.........+.|||||+.|++.... .+...|+++|++++ +.+.+.... +..
T Consensus 294 ~~~d~---~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~--~~~~l~~~~~~~~--------- 358 (415)
T 2hqs_A 294 YKVNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG--GVQVLSSTFLDET--------- 358 (415)
T ss_dssp EEEET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTC--CEEECCCSSSCEE---------
T ss_pred EEEEC---CCCCEEEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCC--CEEEecCCCCcCC---------
Confidence 88886 555666665555556689999999988776532 23468999999884 445554322 222
Q ss_pred eeeCCCCCEEEEEeee
Q 007620 358 MTRTSTGTNVIAKIKK 373 (595)
Q Consensus 358 ~~~~~dg~~l~~~~~~ 373 (595)
+.|+|||+.|++...+
T Consensus 359 ~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred eEEcCCCCEEEEEEcC
Confidence 8999999999887754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-15 Score=169.61 Aligned_cols=295 Identities=13% Similarity=0.156 Sum_probs=178.3
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC-----CceEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GEAKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-----g~~~~lt~ 79 (595)
..|+++|+. +++.++++... ..+..++|||||++|||+. ..+||++++++ |+.++++.
T Consensus 101 ~~i~~~d~~----~~~~~~l~~~~--~~~~~~~~SpdG~~la~~~-----------~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 101 GGLVGFDML----ARKVTYLFDTN--EETASLDFSPVGDRVAYVR-----------NHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp TEEEEEETT----TTEEEEEECCT--TCCTTCEECTTSSEEEEEE-----------TTEEEEEECBCTTSCCCCCEESCS
T ss_pred CEEEEEECC----CCceEEccCCc--ccccCCcCCCCCCEEEEEE-----------CCeEEEEecCcccccCCCcEEecc
Confidence 468999997 78888887432 3588999999999999963 25799999999 99888876
Q ss_pred CCCccc-cc---------cccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCcc
Q 007620 80 SPDICL-NA---------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (595)
Q Consensus 80 ~~~~~~-~~---------~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (595)
.....+ ++ .+..+.|||||+.|++...+..... . ........... . ... ..++....
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~------~~~~~~~~~~~----~-~~~-~~y~~~g~ 230 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-P------TPIVDYHPLEA----E-SKP-LYYPMAGT 230 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-C------EEEEECCSSSC----E-EEE-ECCCBTTS
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-e------EEeeccCCCCC----c-eEE-eeCCCCCC
Confidence 543210 00 0368999999999999753221110 0 00000000000 0 000 01111110
Q ss_pred ceEEeecceEEEEcC-CCCeeecCCC----CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEE
Q 007620 150 LFDYYTTAQLVLGSL-DGTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRE 223 (595)
Q Consensus 150 ~~~~~~~~~l~~~d~-~g~~~~lt~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~ 223 (595)
. ....+|+++|+ +++.+.+... .....++|||||++|++...++.. ....|++||+.++ ..+.
T Consensus 231 ~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 231 P---SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ--------NECKVNAYDAETGRFVRT 299 (706)
T ss_dssp C---CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS--------CEEEEEEEETTTCCEEEE
T ss_pred C---CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC--------CeeEEEEEECCCCceeeE
Confidence 0 12468999999 5566666532 245689999999999998754321 1348999999877 6655
Q ss_pred eccCCCCccCCccccccccCCCCceeec--CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccc
Q 007620 224 LCDLPPAEDIPVCYNSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF 301 (595)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~wsp--dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~ 301 (595)
+........ ......+.|+| ||+ +++.... .....++.++. +++..+.++......
T Consensus 300 ~~~~~~~~~--------~~~~~~~~~sp~~dg~--~l~~~~~---------~g~~~l~~~~~---~~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 300 LFVETDKHY--------VEPLHPLTFLPGSNNQ--FIWQSRR---------DGWNHLYLYDT---TGRLIRQVTKGEWEV 357 (706)
T ss_dssp EEEEECSSC--------CCCCSCCEECTTCSSE--EEEEECT---------TSSCEEEEEET---TSCEEEECCCSSSCE
T ss_pred EEEccCCCe--------ECccCCceeecCCCCE--EEEEEcc---------CCccEEEEEEC---CCCEEEecCCCCeEE
Confidence 532110000 00013578999 987 3333111 11235777674 555566676555545
Q ss_pred cc-eeecCCCcEEEEEEeecc-cceEEEEEeCCCCCCCcEEEee-cccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 302 RS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 302 ~~-~~wspDg~~l~~~~~~~~-~~~~L~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.. +.|||||..|++....+. ...+||.+|++++ +.+.|.. ..+.. +.|+|||+.+++....
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~---------~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--KTKDLTPESGMHR---------TQLSPDGSAIIDIFQS 421 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--CCEESCCSSSEEE---------EEECTTSSEEEEEEEC
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--CceeccCCCceEE---------EEECCCCCEEEEEecC
Confidence 44 799999998777653321 2458999999883 4555542 22222 7899999998877543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-16 Score=173.48 Aligned_cols=308 Identities=9% Similarity=0.077 Sum_probs=178.7
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
+...|||+|+. +|+.++++...... .+..++|||||++|||++. .+||++++++|+.++++...
T Consensus 89 ~~~~i~~~d~~----~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-----------~~i~~~~~~~g~~~~~~~~~ 153 (723)
T 1xfd_A 89 YTGYYVLSKIP----HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------NNIYYCAHVGKQAIRVVSTG 153 (723)
T ss_dssp CCSEEEEEESS----SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------TEEEEESSSSSCCEEEECCC
T ss_pred ceeeEEEEECC----CCceEeccCCccccccccccEECCCCCEEEEEEC-----------CeEEEEECCCCceEEEecCC
Confidence 34789999998 78777887433221 2678999999999999872 47999999999998887653
Q ss_pred Cccc--c------------ccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCC
Q 007620 82 DICL--N------------AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (595)
Q Consensus 82 ~~~~--~------------~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 147 (595)
.... + ..+..+.|||||+.|++...+..... .+........ ....... +.++.+
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~-~~~~~~ 221 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP----------IMELPTYTGS-IYPTVKP-YHYPKA 221 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC----------EEEECCCSSS-SSCCCEE-EECCBT
T ss_pred CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccc----------eEEeeccCCc-CCCccee-ccCCCC
Confidence 2110 0 01247999999999999754321110 0000000000 0000000 111111
Q ss_pred ccceEEeecceEEEEcC-CCC-eeecCCC-------CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 148 ESLFDYYTTAQLVLGSL-DGT-AKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 148 ~~~~~~~~~~~l~~~d~-~g~-~~~lt~~-------~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+.. .....|+++|+ +++ .+.|+.. .....++|||||+.|++...... ....|++||+.+
T Consensus 222 G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i~~~d~~~ 289 (723)
T 1xfd_A 222 GSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ---------NVSILTLCDATT 289 (723)
T ss_dssp TSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS---------CEEEEEEEETTT
T ss_pred CCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC---------CeEEEEEEeCCC
Confidence 110 12358999999 455 4667643 24468999999998876654321 135799999988
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC---ceecc
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILH 295 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~---~~~l~ 295 (595)
++...+......... ......+.|+|||+. |++......+.. .....+++++. .++++ .+.|+
T Consensus 290 g~~~~~~~~~~~~~~-------~~~~~~~~~spdg~~-l~~~~~~~~~~~----~~~~~l~~~d~--~~~~~~~~~~~l~ 355 (723)
T 1xfd_A 290 GVCTKKHEDESEAWL-------HRQNEEPVFSKDGRK-FFFIRAIPQGGR----GKFYHITVSSS--QPNSSNDNIQSIT 355 (723)
T ss_dssp CCEEEEEEEECSSCC-------CCCCCCCEECTTSCS-EEEEEEECCSSS----SCEEEEEEECS--SCCSSSCCCCBSC
T ss_pred CcceEEEEeccCCEE-------eccCCCceEcCCCCe-EEEEEecccCCC----cceeEEEEEec--cCCCCccceeEee
Confidence 776554321100000 000136899999985 555422111100 01236777772 14556 66676
Q ss_pred ccCcccc-ceeecCCCcEEEEEEeec-ccceEEEEEeCCCCCCCcEEEee-----cccccccCCCCCCCeeeCCCCCEEE
Q 007620 296 KLDLRFR-SVSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVAPRVLFD-----RVFENVYSDPGSPMMTRTSTGTNVI 368 (595)
Q Consensus 296 ~~~~~~~-~~~wspDg~~l~~~~~~~-~~~~~L~~~d~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~dg~~l~ 368 (595)
....... .+.|||||+.|++....+ ....+||.++++++ ...+.|.. ..+. .+.|+|||+.++
T Consensus 356 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~---------~~~~spdg~~l~ 425 (723)
T 1xfd_A 356 SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVENCTYF---------SASFSHSMDFFL 425 (723)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSSCCCC---------EEEECTTSSEEE
T ss_pred cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-CCcceecccccCCCCeE---------EEEECCCCCEEE
Confidence 5444333 368999999887765332 14568999998763 13344432 1122 278999999998
Q ss_pred EEeee
Q 007620 369 AKIKK 373 (595)
Q Consensus 369 ~~~~~ 373 (595)
+....
T Consensus 426 ~~~~~ 430 (723)
T 1xfd_A 426 LKCEG 430 (723)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 87654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-16 Score=172.23 Aligned_cols=329 Identities=10% Similarity=0.015 Sum_probs=185.5
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
...++||||| .+++... ...|+++++++|+.++++...... ...+..+.|||||+.|+|.....
T Consensus 18 ~~~~~~s~dg-~~~~~~~----------d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~---- 81 (719)
T 1z68_A 18 TFFPNWISGQ-EYLHQSA----------DNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYS---- 81 (719)
T ss_dssp CCCCEESSSS-EEEEECT----------TSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEE----
T ss_pred CCccEECCCC-eEEEEcC----------CCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCc----
Confidence 3478999999 4555431 357999999999988886533200 00256899999999999963210
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe---eecCCCCeeeeeEECCCCCe
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~---~~lt~~~~~~~~~~SpDg~~ 188 (595)
+ .+ .+. ....|+++|+ +|+. ++|.. ....++|||||++
T Consensus 82 -----------------~------~~------~~s-------~~~~i~~~d~~~g~~~~~~~l~~--~~~~~~~SPDG~~ 123 (719)
T 1z68_A 82 -----------------K------LW------RYS-------YTATYYIYDLSNGEFVRGNELPR--PIQYLCWSPVGSK 123 (719)
T ss_dssp -----------------E------CS------SSC-------EEEEEEEEETTTTEECCSSCCCS--SBCCEEECSSTTC
T ss_pred -----------------e------eE------Eee-------cceEEEEEECCCCccccceecCc--ccccceECCCCCE
Confidence 0 00 000 1357899999 5566 56642 3457899999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc---------cCCCCceeecCCCeeEEE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR---------EGMRSISWRADKPSTLYW 259 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~wspdg~~~l~~ 259 (595)
|+|+.. ..|+++++.+++.++++...... ..+++.. .....+.|||||+. |++
T Consensus 124 la~~~~--------------~~i~~~~~~~g~~~~l~~~~~~~---~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~ 185 (719)
T 1z68_A 124 LAYVYQ--------------NNIYLKQRPGDPPFQITFNGREN---KIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAY 185 (719)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCCCCBTT---TEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEE
T ss_pred EEEEEC--------------CeEEEEeCCCCCcEEEecCCCcC---CeEcccccceeeeecccCcccEEECCCCCE-EEE
Confidence 999853 27999999888777765322110 0000100 00136899999985 666
Q ss_pred EEeecCCCccc----------------------ccCCcceEEeccCCCCCCCCce---ecc------ccCccccceeecC
Q 007620 260 VEAQDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKPE---ILH------KLDLRFRSVSWCD 308 (595)
Q Consensus 260 ~~~~d~~~~~~----------------------~~~~~~~~~~~d~~~~~g~~~~---~l~------~~~~~~~~~~wsp 308 (595)
....+...... .......++++|+ ++++.. .+. .....+..+.|||
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp 262 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT---TYPAYVGPQEVPVPAMIASSDYYFSWLTWVT 262 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES---SCHHHHCCEECCCCHHHHTSCEEEEEEEESS
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC---CCCCccceeEccCCccCCCCcceEEEeEEeC
Confidence 53322110000 0011236777786 444431 221 2233457899999
Q ss_pred CCcEEEEEEeecccceEEEEEe----CCCCCCCcEEEee----cccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007620 309 DSLALVNETWYKTSQTRTWLVC----PGSKDVAPRVLFD----RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (595)
Q Consensus 309 Dg~~l~~~~~~~~~~~~L~~~d----~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 380 (595)
|++.++...........|+++| +.++ +.+.++. ..-. .+.......+.|+|||+.+++...... ....
T Consensus 263 D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~-g~~~ 338 (719)
T 1z68_A 263 DERVCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTG-WAGGFFVSTPVFSYDAISYYKIFSDKD-GYKH 338 (719)
T ss_dssp SSEEEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSS-CSSSSSCCCCEECTTSSCEEEEEECTT-SCEE
T ss_pred CCeEEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCc-eEccccCCccEECCCCCeEEEEEEccC-CceE
Confidence 9865444322223446899999 7763 3333331 1110 000000002789999998877543221 1223
Q ss_pred EEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEec---CCCcceEEEE
Q 007620 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQYHIL 457 (595)
Q Consensus 381 l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s---~~~p~~l~~~ 457 (595)
|+ .+|+.+++.+.|+.... .+.. ..++ +++.+++.... ...-..||.+
T Consensus 339 l~----------------~~~~~~~~~~~lt~~~~-----~v~~-------~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 339 IH----------------YIKDTVENAIQITSGKW-----EAIN-------IFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EE----------------EESSCSTTCEECSCSSS-----CEEE-------EEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EE----------------EEECCCCceEecccCce-----EEEE-------EEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 43 46776676666653221 1111 1245 78888888754 1234568888
Q ss_pred eCCCC--ceeeEec
Q 007620 458 SWPLK--KSSQITN 469 (595)
Q Consensus 458 d~~~~--~~~~Lt~ 469 (595)
++.++ +.++|+.
T Consensus 390 ~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 390 SIGSYPPSKKCVTC 403 (719)
T ss_dssp ECSSSSCCEEESST
T ss_pred eCCCCCCCceeccC
Confidence 87555 3466663
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-15 Score=153.69 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=169.4
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..||++|+. +++.++++.... .....+.|||||++|||++.. .+||++++++++.++++....
T Consensus 60 ~~l~~~d~~----~~~~~~l~~~~~-~~~~~~~~spdg~~l~~~~~~----------~~l~~~d~~~~~~~~~~~~~~-- 122 (396)
T 3c5m_A 60 RNYYLLNLE----TQQAVQLTEGKG-DNTFGGFISTDERAFFYVKNE----------LNLMKVDLETLEEQVIYTVDE-- 122 (396)
T ss_dssp CEEEEEETT----TTEEEECCCSSC-BCTTTCEECTTSSEEEEEETT----------TEEEEEETTTCCEEEEEECCT--
T ss_pred ceEEEEECC----CCcEEEeecCCC-CccccceECCCCCEEEEEEcC----------CcEEEEECCCCCcEEEEeccc--
Confidence 479999997 888888874222 123348999999999998742 379999999999888865432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.|+++|+.|+|........... ....+ ..+++. ..+... . .. ....+|+++|+
T Consensus 123 --------~~~~~g~~l~~~~~~~~~~~~~-----~~~~~--spdg~~---~~~~~~-~--~~------~~~~~l~~~d~ 175 (396)
T 3c5m_A 123 --------EWKGYGTWVANSDCTKLVGIEI-----LKRDW--QPLTSW---EKFAEF-Y--HT------NPTCRLIKVDI 175 (396)
T ss_dssp --------TEEEEEEEEECTTSSEEEEEEE-----EGGGC--CCCCSH---HHHHHH-H--HT------CCCEEEEEEET
T ss_pred --------ccCCCCCEEEeccCCccccccc-----ccccc--CCCCcc---eeeeee-c--cC------CCcceEEEEEC
Confidence 2899999888852110000000 00000 000100 000000 0 00 02468999999
Q ss_pred -CCCeeecCCC-CeeeeeEECC-CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 165 -DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 165 -~g~~~~lt~~-~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+|+.+.++.. .....+.||| ||++|+|... .+.. .....|+++|++++..+.+......
T Consensus 176 ~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~~------~~~~~l~~~d~~~~~~~~l~~~~~~----------- 237 (396)
T 3c5m_A 176 ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPHD------LVDARMWLVNEDGSNVRKIKEHAEG----------- 237 (396)
T ss_dssp TTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC-SCSS------SCSCCCEEEETTSCCCEESSCCCTT-----------
T ss_pred CCCcEEeeccCCcccccceECCCCCCEEEEEec-CCCC------CCCceEEEEECCCCceeEeeccCCC-----------
Confidence 5677766543 2456789999 8999999874 2210 0124799999988876666542100
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecC-CCcEEEEEEee-
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD-DSLALVNETWY- 319 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~- 319 (595)
.....+.|+|||+. |++....++. ....++++++ .+++.+.+...... . +.|+| ||+.+++....
T Consensus 238 ~~~~~~~~spdg~~-l~~~~~~~~~-------~~~~l~~~d~---~~g~~~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 238 ESCTHEFWIPDGSA-MAYVSYFKGQ-------TDRVIYKANP---ETLENEEVMVMPPC-S-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp EEEEEEEECTTSSC-EEEEEEETTT-------CCEEEEEECT---TTCCEEEEEECCSE-E-EEEECSSSSEEEEEECCC
T ss_pred ccccceEECCCCCE-EEEEecCCCC-------ccceEEEEEC---CCCCeEEeeeCCCC-C-CCccCCCCceEEEecCCc
Confidence 01234789999985 5555322110 1124888886 55566666543332 2 89999 99977664310
Q ss_pred -----------cccceEEEEEeCCCCCCCcEEEeeccccc-c---cCCCCCCCeeeCCCCCEEEEEee
Q 007620 320 -----------KTSQTRTWLVCPGSKDVAPRVLFDRVFEN-V---YSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 320 -----------~~~~~~L~~~d~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
..+...||++|++++ +.+.|....... . ........+.|++||+.|++...
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK--SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT--BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ceeeccccccccCCCCcEEEEecccC--ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 113458999999884 445554322100 0 00000112789999999988764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-14 Score=166.22 Aligned_cols=248 Identities=10% Similarity=-0.009 Sum_probs=164.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc-
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~- 83 (595)
..||..++. ++..++++... ....+.|||||++|||.. ...||++++.++....+......
T Consensus 226 ~~l~~~~~~----g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-----------~~~i~~~d~~~~~l~~l~~~~~~~ 287 (1045)
T 1k32_A 226 GQIYSTDLD----GKDLRKHTSFT---DYYPRHLNTDGRRILFSK-----------GGSIYIFNPDTEKIEKIEIGDLES 287 (1045)
T ss_dssp CEEEEEETT----SCSCEECCCCC---SSCEEEEEESSSCEEEEE-----------TTEEEEECTTTCCEEECCCCCCCB
T ss_pred eEEEEEeCC----CCcceEecCCC---CcceeeEcCCCCEEEEEe-----------CCEEEEecCCceEeeeeccCcccc
Confidence 367877776 67777887422 356789999999999974 25799999866665555331100
Q ss_pred -----cccccccceEEe-cCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecc
Q 007620 84 -----CLNAVFGSFVWV-NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (595)
Q Consensus 84 -----~~~~~~~~~~Ws-pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (595)
.....+..+.|| |||+.|++.. ..
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~--------------------------------------------------~~ 317 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS--------------------------------------------------RG 317 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE--------------------------------------------------TT
T ss_pred cccccccccccceeeecCCCCCEEEEEE--------------------------------------------------cC
Confidence 001135689999 9999998862 12
Q ss_pred eEEEEcC-CCCeeecCCC-C-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEE-EEcCCCceEEEeccCCCCccC
Q 007620 158 QLVLGSL-DGTAKDFGTP-A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ-VWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 158 ~l~~~d~-~g~~~~lt~~-~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~-~~d~~g~~~~~l~~~~~~~~~ 233 (595)
.|+++++ .++.+.++.. . ....++|| ||+.|++.+. . ..++ ++++.+++.+.+....
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~------------~~l~~~~d~~~~~~~~l~~~~----- 378 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-E------------GDFLGIYDYRTGKAEKFEENL----- 378 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-T------------EEEEEEEETTTCCEEECCCCC-----
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-C------------CceEEEEECCCCCceEecCCc-----
Confidence 4666777 4466666543 3 45688999 9999998874 1 3788 9999988777765211
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc-ccCccccceeecCCCcE
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-~~~~~~~~~~wspDg~~ 312 (595)
.....+.|+|||+. |++. ..+..++++|+ .+++.+.+. .....+..+.|||||+.
T Consensus 379 --------~~~~~~~~SpDG~~-la~~------------~~~~~v~~~d~---~tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 379 --------GNVFAMGVDRNGKF-AVVA------------NDRFEIMTVDL---ETGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp --------CSEEEEEECTTSSE-EEEE------------ETTSEEEEEET---TTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred --------cceeeeEECCCCCE-EEEE------------CCCCeEEEEEC---CCCceEEeccCCCCCccceEECCCCCe
Confidence 11235899999984 5443 12346788886 555666665 34455678999999998
Q ss_pred EEEEEeec------ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 313 LVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 313 l~~~~~~~------~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
|++..... .....|+++|++++ +.+.+....... ..+.|++||+.|++...
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g--~~~~l~~~~~~~-------~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHD-------YAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBE-------EEEEECTTSCEEEEEES
T ss_pred EEEEecCccccccCCCCCeEEEEECCCC--cEEEeeCCCccc-------CCceEcCCCCEEEEEec
Confidence 77764322 23458999999883 444454322111 01789999999998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-15 Score=162.86 Aligned_cols=293 Identities=14% Similarity=0.103 Sum_probs=176.5
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCccc---------ceEEc--cCCCE-EEEEEecccccccCCCceEEEEEECC--
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKIN---------FVSWS--PDGKR-IAFSVRVDEEDNVSSCKLRVWIADAE-- 70 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~---------~~~~S--PDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~-- 70 (595)
..||++ .. +|+.++|+... ..+. .+.|| |||++ |||+.. ...+||++++.
T Consensus 49 ~~l~~~-~~----~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~---------~~~~l~~~~~~~~ 112 (662)
T 3azo_A 49 ATLVRR-RA----DGAEESALPAP--WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF---------GDQRLYAFEPDAP 112 (662)
T ss_dssp EEEEEE-CT----TSCEEESSCTT--CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT---------TTCCEEEECTTST
T ss_pred EEEEEE-CC----CCCcceeCCCC--ccccccccccCCccceeeeecCCCeEEEEEEC---------CCCeEEEEcCCCC
Confidence 457766 33 78888888433 2233 56676 99999 999763 24789999998
Q ss_pred C-CceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCcc
Q 007620 71 T-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (595)
Q Consensus 71 ~-g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (595)
+ ++.++|+..........+..+.|||||+.|++...+.... + ..
T Consensus 113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~------------------~----------------~~- 157 (662)
T 3azo_A 113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE------------------G----------------PS- 157 (662)
T ss_dssp TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS------------------S----------------TT-
T ss_pred CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC------------------C----------------CC-
Confidence 6 8889998643100011356899999999999974210000 0 00
Q ss_pred ceEEeecceEEEEcC-C------CCeeecC-CC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-Cc
Q 007620 150 LFDYYTTAQLVLGSL-D------GTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GK 219 (595)
Q Consensus 150 ~~~~~~~~~l~~~d~-~------g~~~~lt-~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~ 219 (595)
....+|+++++ . ++.++|+ .. .....++|||||++|++.+...+. .++ ...+|+++|++ ++
T Consensus 158 ----~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~---~~~--~~~~i~~~d~~~~g 228 (662)
T 3azo_A 158 ----DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR---MPW--EGTELKTARVTEDG 228 (662)
T ss_dssp ----CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC---CTT--TCEEEEEEEECTTS
T ss_pred ----CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC---CCC--CCcEEEEEEECCCC
Confidence 02468999999 4 5677787 54 355688999999999998754321 111 13589999998 46
Q ss_pred ---eEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc
Q 007620 220 ---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (595)
Q Consensus 220 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~ 296 (595)
+.+.+..... .....+.|+|||+ +++....+ ....++++++ ++++.+.++.
T Consensus 229 ~~~~~~~l~~~~~------------~~~~~~~~spdg~--l~~~~~~~---------~~~~l~~~~~---~~~~~~~l~~ 282 (662)
T 3azo_A 229 RFADTRTLLGGPE------------EAIAQAEWAPDGS--LIVATDRT---------GWWNLHRVDP---ATGAATQLCR 282 (662)
T ss_dssp CEEEEEEEEEETT------------BCEEEEEECTTSC--EEEEECTT---------SSCEEEEECT---TTCCEEESSC
T ss_pred cccccEEeCCCCC------------ceEcceEECCCCe--EEEEECCC---------CCeEEEEEEC---CCCceeeccc
Confidence 5555543210 1124588999998 55542111 1226788785 4567777765
Q ss_pred cCccccc---------eeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEE
Q 007620 297 LDLRFRS---------VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 297 ~~~~~~~---------~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l 367 (595)
....... +.|+||+..++... + +..+||.+|++++ +.+.|..... . +. ..|+++|+.+
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d~~~~--~~~~l~~~~~-~-~~------~~~s~~~~~~ 349 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILDPESG--ELVDAAGPWT-E-WA------ATLTVSGTRA 349 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEETTTT--EEEECCSSCC-E-EE------EEEEEETTEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEE--c-CccEEEEEECCCC--cEEEecCCCC-e-EE------EEEecCCCEE
Confidence 4433333 44556666544432 3 5669999999873 4454432111 0 00 1125677777
Q ss_pred EEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeec
Q 007620 368 IAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (595)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (595)
++...... ....+ +.+|+++++.+.|+..
T Consensus 350 ~~~~~~~~-~~~~i----------------~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 350 VGVAASPR-TAYEV----------------VELDTVTGRARTIGAR 378 (662)
T ss_dssp EEEEEETT-EEEEE----------------EEEETTTCCEEEEESC
T ss_pred EEEEcCCC-CCCEE----------------EEEECCCCceEEeecC
Confidence 66654321 11233 3567777777777543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-13 Score=150.06 Aligned_cols=122 Identities=12% Similarity=0.010 Sum_probs=90.1
Q ss_pred ccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCC
Q 007620 434 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPL 513 (595)
Q Consensus 434 ~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~l 513 (595)
.+++++.++++.++...|+++|++++. ++.+.|+..+. ......+.+|.++|++.||.+|+++|++|.++++++++
T Consensus 403 ~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~~-~~~~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~-- 478 (711)
T 4hvt_A 403 SYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKALY-SFDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKN-- 478 (711)
T ss_dssp CCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCSS-CCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCC--
T ss_pred ecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCCc-ccCcccCeeEEEEEECCCCeEEEEEEEecCCCCCCCCc--
Confidence 346778899999999999999999987 78888988753 34444458999999999999999999999998766544
Q ss_pred cEEEEeccCCccCcccCCcccCCCCcccCCCCc--hhHHHhccCeEEEeCCCCceeecCCCCCCchh
Q 007620 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT--SSLIFLARRFAVLAGPSIPIIGEGDKLPNDRY 578 (595)
Q Consensus 514 P~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~--~~q~la~~GY~Vl~~~~~~~~~~~~~~~~~~~ 578 (595)
|+||++|++ |.......+. ..|+|+++||+|+. +.++ |+.+++..+
T Consensus 479 P~vl~~HGG--------------~~~~~~~~~~~~~~q~la~~Gy~Vv~----~d~R-Gsg~~G~~~ 526 (711)
T 4hvt_A 479 PTLLEAYGG--------------FQVINAPYFSRIKNEVWVKNAGVSVL----ANIR-GGGEFGPEW 526 (711)
T ss_dssp CEEEECCCC--------------TTCCCCCCCCHHHHHHTGGGTCEEEE----ECCT-TSSTTCHHH
T ss_pred cEEEEECCC--------------CCCCCCCcccHHHHHHHHHCCCEEEE----EeCC-CCCCcchhH
Confidence 999997743 3321111222 22699999999999 4444 333444443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=140.07 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=149.0
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
+...||+.|+. +++.++| ..+..|+|||||++|||++.... .+..+||++++++|+.++++....
T Consensus 41 ~~~~l~~~d~~----~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~-----~~~~~l~~~~~~~g~~~~l~~~~~ 105 (347)
T 2gop_A 41 YENTIVIENLK----NNARRFI------ENATMPRISPDGKKIAFMRANEE-----KKVSEIWVADLETLSSKKILEAKN 105 (347)
T ss_dssp EEEEEEEEETT----TCCEEEE------ESCEEEEECTTSSEEEEEEEETT-----TTEEEEEEEETTTTEEEEEEEESE
T ss_pred ccceEEEEeCC----CCceEEc------ccCCCeEECCCCCEEEEEEeccC-----CCcceEEEEECCCCceEEEEcCCC
Confidence 46789999998 7888777 24778999999999999886421 246789999999999998875431
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
+..+.|||||+.|+|........ . ....+.. +.+..++.++......+||++
T Consensus 106 ------~~~~~wspdg~~l~~~~~~~~~~------------------~---~~~~~~~-~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 106 ------IRSLEWNEDSRKLLIVGFKRRED------------------E---DFIFEDD-VPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp ------EEEEEECTTSSEEEEEEECCCC-------------------------------CCCC---------CEEEEEEE
T ss_pred ------ccceeECCCCCEEEEEEccCCCc------------------C---CcEEEcc-cceeecCcccccCccceEEEE
Confidence 56899999999999975321000 0 0000100 122222222211234689999
Q ss_pred cC-CCCe-eecCCCCeeeeeEECCCCCeEEEEEcccCccccccCccc-ceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 163 SL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARF-SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 163 d~-~g~~-~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~-~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
++ +|+. +.|+.+ ....+.||||| |+|+........ ... ..+|+++| +++.+.+... .
T Consensus 158 d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~----~~~~~~~l~~~d--~~~~~~l~~~-~---------- 217 (347)
T 2gop_A 158 DTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIP----QYFKFWDIYIWE--DGKEEKMFEK-V---------- 217 (347)
T ss_dssp ETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSC----CSSCCEEEEEEE--TTEEEEEEEE-E----------
T ss_pred ECCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccc----cccccccEEEeC--CCceEEeccC-c----------
Confidence 99 5666 677653 44578999999 677654321100 001 34788999 6666666432 1
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-Cccccc-eeecCCCcEEEEEE
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRS-VSWCDDSLALVNET 317 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-~~~~~~-~~wspDg~~l~~~~ 317 (595)
....++|||+. |++........ ......+++++ + ++.+.++.. ...+.. +.|+ || . ++..
T Consensus 218 -----~~~~~spdg~~-l~~~~~~~~~~----~~~~~~l~~~d----~-~~~~~l~~~~~~~~~~~~~~s-dg-~-~~~~ 279 (347)
T 2gop_A 218 -----SFYAVDSDGER-ILLYGKPEKKY----MSEHNKLYIYD----G-KEVMGILDEVDRGVGQAKIKD-GK-V-YFTL 279 (347)
T ss_dssp -----SEEEEEECSSC-EEEEECCSSSC----CCSSCEEEEEC----S-SCEEESSTTCCSEEEEEEEET-TE-E-EEEE
T ss_pred -----ceeeECCCCCE-EEEEEccccCC----ccccceEEEEC----C-CceEeccccCCcccCCccEEc-Cc-E-EEEE
Confidence 11334999985 65552211100 01123566655 2 355666543 445565 8999 88 3 3332
Q ss_pred eecccceEEEEEeCCCCCCCcEEEe
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
. ..+..+|| ++ ++ +.+.++
T Consensus 280 ~-~~~~~~l~-~~-~g---~~~~~~ 298 (347)
T 2gop_A 280 F-EEGSVNLY-IW-DG---EIKPIA 298 (347)
T ss_dssp E-ETTEEEEE-EE-SS---SEEEEE
T ss_pred e-cCCcEEEE-Ec-CC---ceEEEe
Confidence 2 23566899 88 43 345554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-13 Score=151.80 Aligned_cols=276 Identities=10% Similarity=0.064 Sum_probs=163.4
Q ss_pred eeeEEEecCCCCCCCCceeeecC---CCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGY---PDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~---~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
+.||++++. +++.+.|... ..+ .....++|||||++|||....+. ....+|+++|+++|+..+++.
T Consensus 98 ~~l~~~~~~----~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G-----~~~~~i~v~d~~tg~~~~~~~ 168 (710)
T 2xdw_A 98 RVLYVQDSL----EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG-----SDWVTIKFMKVDGAKELPDVL 168 (710)
T ss_dssp CEEEEESST----TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT-----CSCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCC----CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC-----CceEEEEEEECCCCCCCcccc
Confidence 468888876 6666666421 111 14678999999999999987531 223599999999999877643
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
... .+..+.|||||+.|+|......... ..+. . . .. ....+|
T Consensus 169 ~~~-----~~~~~~wspDg~~l~~~~~~~~~~~---------------~~~~------~-------~-~~----~~~~~v 210 (710)
T 2xdw_A 169 ERV-----KFSCMAWTHDGKGMFYNAYPQQDGK---------------SDGT------E-------T-ST----NLHQKL 210 (710)
T ss_dssp EEE-----CSCCEEECTTSSEEEEEECCCCSSC---------------CSSS------C-------C-CC----CCCCEE
T ss_pred cCc-----ccceEEEEeCCCEEEEEEECCcccc---------------cccc------c-------c-cc----CCCCEE
Confidence 221 3568999999999999754321100 0000 0 0 00 024678
Q ss_pred EEEcC-CCCe--eec-CC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC------c--eEEEe
Q 007620 160 VLGSL-DGTA--KDF-GT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------K--LVREL 224 (595)
Q Consensus 160 ~~~d~-~g~~--~~l-t~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g------~--~~~~l 224 (595)
|++++ +++. +.+ .. +.....+.|||||++|++....... ...+|+++|+.+ + ..+.|
T Consensus 211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECcccccccCCccceEEe
Confidence 99998 4432 333 22 2245688999999999998753210 135899999875 4 34555
Q ss_pred ccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC---ceeccccCc--
Q 007620 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDL-- 299 (595)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~---~~~l~~~~~-- 299 (595)
.... ......|++||+. |++....+ .....|+++++ .+++ .+.|+....
T Consensus 283 ~~~~--------------~~~~~~~s~dg~~-l~~~s~~~--------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 283 IDNF--------------EGEYDYVTNEGTV-FTFKTNRH--------SPNYRLINIDF---TDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp ECSS--------------SSCEEEEEEETTE-EEEEECTT--------CTTCEEEEEET---TSCCGGGCEEEECCCSSC
T ss_pred eCCC--------------CcEEEEEeccCCE-EEEEECCC--------CCCCEEEEEeC---CCCCcccceeccCCCCCC
Confidence 4321 0112458899874 65552111 11246777786 4333 255554322
Q ss_pred cccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe-e-cccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-D-RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
.+..+.|++++..++... +.+..+|+++++.++ ...+.|. . ..+.. +.++++++.+++....
T Consensus 337 ~~~~~~~~~~~~lv~~~~--~~g~~~l~~~~~~~g-~~~~~l~~~~~~v~~---------~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYL--HDVKNTLQLHDLATG-ALLKIFPLEVGSVVG---------YSGQKKDTEIFYQFTS 400 (710)
T ss_dssp EEEEEEEETTTEEEEEEE--ETTEEEEEEEETTTC-CEEEEECCCSSEEEE---------EECCTTCSEEEEEEEC
T ss_pred eEEEEEEEcCCEEEEEEE--ECCEEEEEEEECCCC-CEEEecCCCCceEEE---------EecCCCCCEEEEEEeC
Confidence 456788886655443322 245668999998553 2234442 1 11111 6678899888877643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-13 Score=148.88 Aligned_cols=294 Identities=12% Similarity=0.067 Sum_probs=171.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCC---C--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPD---G--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~---~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
..||+++.. +|++++|+.... + ..+..++|||||++|||...... ....+|+++|+++|+..+...
T Consensus 94 ~~l~~~~~~----~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G-----~~~~~i~v~dl~tg~~~~~~~ 164 (695)
T 2bkl_A 94 AILYWRQGE----SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNA-----ADEAVLHVIDVDSGEWSKVDV 164 (695)
T ss_dssp CEEEEEEST----TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETT-----CSCCEEEEEETTTCCBCSSCC
T ss_pred EEEEEEcCC----CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCC-----CceEEEEEEECCCCCCcCCcc
Confidence 468988876 778888874221 1 14778999999999999987631 234799999999998652211
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
.... ....+.|||||+.|+|...+.... +.. .+ . ....+|
T Consensus 165 ~~~~----~~~~~~wspDg~~l~~~~~d~~~~------------------~~~------~~-------~-----~~~~~v 204 (695)
T 2bkl_A 165 IEGG----KYATPKWTPDSKGFYYEWLPTDPS------------------IKV------DE-------R-----PGYTTI 204 (695)
T ss_dssp BSCC----TTCCCEECTTSSEEEEEECCCCTT------------------SCG------GG-------G-----GGGCEE
T ss_pred cCcc----cccceEEecCCCEEEEEEecCCCC------------------Ccc------cc-------C-----CCCCEE
Confidence 1211 236899999999999975432100 000 00 0 024679
Q ss_pred EEEcC-CCC--eeecCCC----CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCcc
Q 007620 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (595)
Q Consensus 160 ~~~d~-~g~--~~~lt~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~ 232 (595)
|++++ ++. .+.+... .....+.|||||++|++.+.... ...+|++++..++..+.|.....
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~l~~~~~--- 272 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFRLLVKGVG--- 272 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCEEEEECSS---
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceEEeecCCC---
Confidence 99998 454 2344322 24568899999999999875431 13589999887666666653211
Q ss_pred CCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc---eecccc--Cccccceeec
Q 007620 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKL--DLRFRSVSWC 307 (595)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~--~~~~~~~~ws 307 (595)
....+.| ++|+ +++....+ .....|+++++ ++++. +.+... ...+..+.|+
T Consensus 273 ----------~~~~~~~-~~g~--l~~~s~~~--------~~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 273 ----------AKYEVHA-WKDR--FYVLTDEG--------APRQRVFEVDP---AKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp ----------CCEEEEE-ETTE--EEEEECTT--------CTTCEEEEEBT---TBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred ----------ceEEEEe-cCCc--EEEEECCC--------CCCCEEEEEeC---CCCCccCCeEEecCCCCCeEEEEEEE
Confidence 1122444 6765 55442111 12346777786 43442 455533 2335567777
Q ss_pred CCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCC
Q 007620 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (595)
Q Consensus 308 pDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g 387 (595)
++..++... +.+..+||.+++++ +..+.+.-.... .. ..+.+++||+.+++......+++ .+|
T Consensus 329 -~~~lv~~~~--~dg~~~l~~~~~~g--~~~~~l~~~~~~-~v-----~~~~~s~d~~~l~~~~ss~~~P~-~v~----- 391 (695)
T 2bkl_A 329 -GGHLSLEYL--KDATSEVRVATLKG--KPVRTVQLPGVG-AA-----SNLMGLEDLDDAYYVFTSFTTPR-QIY----- 391 (695)
T ss_dssp -TTEEEEEEE--ETTEEEEEEEETTC--CEEEECCCSSSS-EE-----CCCBSCTTCSEEEEEEEETTEEE-EEE-----
T ss_pred -CCEEEEEEE--ECCEEEEEEEeCCC--CeeEEecCCCCe-EE-----EEeecCCCCCEEEEEEcCCCCCC-EEE-----
Confidence 444333322 34567899999876 333333211010 00 11677889998887765422222 233
Q ss_pred CCCCCCcceeEeeecCCCceeeee
Q 007620 388 FTPEGNIPFLDLFDINTGSKERIW 411 (595)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~ 411 (595)
.+|+.+++.+.+.
T Consensus 392 -----------~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 392 -----------KTSVSTGKSELWA 404 (695)
T ss_dssp -----------EEETTTCCEEEEE
T ss_pred -----------EEECCCCcEEEEe
Confidence 4677777765554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-11 Score=125.19 Aligned_cols=247 Identities=13% Similarity=0.050 Sum_probs=156.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|++.|+. +++...... ....+..+.|||||++|++.... ...|+++|+.+++.........
T Consensus 12 ~~v~v~d~~----~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~~~-- 74 (391)
T 1l0q_A 12 DNISVIDVT----SNKVTATIP--VGSNPMGAVISPDGTKVYVANAH---------SNDVSIIDTATNNVIATVPAGS-- 74 (391)
T ss_dssp TEEEEEETT----TTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGG---------GTEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEECC----CCeEEEEee--cCCCcceEEECCCCCEEEEECCC---------CCeEEEEECCCCeEEEEEECCC--
Confidence 358899997 666554432 33357889999999998776532 3678999999888665544333
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|+|||+.|++.... ...|+++|+
T Consensus 75 ---~v~~~~~spdg~~l~~~~~~------------------------------------------------~~~v~v~d~ 103 (391)
T 1l0q_A 75 ---SPQGVAVSPDGKQVYVTNMA------------------------------------------------SSTLSVIDT 103 (391)
T ss_dssp ---SEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEET
T ss_pred ---CccceEECCCCCEEEEEECC------------------------------------------------CCEEEEEEC
Confidence 46789999999998876210 134667777
Q ss_pred -CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 -DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 -~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+++.. .+........++|+|||++|+++... ...|++||+.+++........ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~-------------~ 158 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------R 158 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------S
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEecC-------------C
Confidence 44433 23333345688999999999877643 237999998876554332211 1
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+|||+. |+... .....++++|+ ..++.............+.|+|||..++.... +..
T Consensus 159 ~~~~~~~~~dg~~-l~~~~-----------~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~~ 222 (391)
T 1l0q_A 159 SPKGIAVTPDGTK-VYVAN-----------FDSMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV-DKY 222 (391)
T ss_dssp SEEEEEECTTSSE-EEEEE-----------TTTTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEE-CSS
T ss_pred CcceEEECCCCCE-EEEEe-----------CCCCEEEEEEC---CCCeEEEEEecCCCccceEECCCCCEEEEEec-CcC
Confidence 1235789999974 43321 11246777786 43344433333445667899999987665432 112
Q ss_pred ceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 323 QTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
...|+++|+.++ +....... .... +.|+++|+.+++..
T Consensus 223 ~~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 223 FNTVSMIDTGTN--KITARIPVGPDPAG---------IAVTPDGKKVYVAL 262 (391)
T ss_dssp CCEEEEEETTTT--EEEEEEECCSSEEE---------EEECTTSSEEEEEE
T ss_pred CCcEEEEECCCC--eEEEEEecCCCccE---------EEEccCCCEEEEEc
Confidence 347889998873 22222221 1222 78999999887765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-13 Score=129.08 Aligned_cols=223 Identities=14% Similarity=0.084 Sum_probs=149.1
Q ss_pred eeeEEEecCCCCCC-CCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSL-GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~-g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|+++|+. + ++.+++........+..++|||||++|++..... ++..+||++++.+++.++++...
T Consensus 62 ~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~-- 129 (297)
T 2ojh_A 62 GLLYRLSLA----GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE------FGKSAIYLLPSTGGTPRLMTKNL-- 129 (297)
T ss_dssp TEEEEEESS----SCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT------TSSCEEEEEETTCCCCEECCSSS--
T ss_pred CeEEEEeCC----CCCCceEeccccccccccceEECCCCCEEEEEEeCC------CCcceEEEEECCCCceEEeecCC--
Confidence 368999997 6 7777776433334578899999999999987431 34689999999988888875443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|+|||+.|++.... + ...+||.++
T Consensus 130 ----~~~~~~~spdg~~l~~~~~~---------------------------------------~-------~~~~l~~~~ 159 (297)
T 2ojh_A 130 ----PSYWHGWSPDGKSFTYCGIR---------------------------------------D-------QVFDIYSMD 159 (297)
T ss_dssp ----SEEEEEECTTSSEEEEEEEE---------------------------------------T-------TEEEEEEEE
T ss_pred ----CccceEECCCCCEEEEEECC---------------------------------------C-------CceEEEEEE
Confidence 24578999999999886310 0 123688888
Q ss_pred C-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+ .++.+.+... .....+.|||||++|++...... ...+|.++..++..+.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~------------- 216 (297)
T 2ojh_A 160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG----------QMQIWRVRVDGSSVERITDSA------------- 216 (297)
T ss_dssp TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCEEECCCCS-------------
T ss_pred CCCCcceEcccCCCccccceECCCCCEEEEEecCCC----------CccEEEECCCCCCcEEEecCC-------------
Confidence 8 4566666544 34568999999999998864322 347888888777777665332
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc---cCccccceeecCCCcEEEEEE
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~---~~~~~~~~~wspDg~~l~~~~ 317 (595)
.....+.|+|||+. |++... +.+...........++++++ .+++...+.. ....+..+.|+|||..|++..
T Consensus 217 ~~~~~~~~s~dg~~-l~~~~~-~~~~~~~~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 217 YGDWFPHPSPSGDK-VVFVSY-DADVFDHPRDLDVRVQLMDM---DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEEEEEEECTTSSE-EEEEEE-ETTCCSCCSSEEEEEEEEET---TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred cccCCeEECCCCCE-EEEEEc-CCCCCcccccCceEEEEEec---CCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 11235789999984 555432 22111000012246888886 5556655543 345677899999999877664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-11 Score=122.93 Aligned_cols=276 Identities=8% Similarity=-0.007 Sum_probs=161.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....+.|||||++|++....+... .....|+++|+++++......... ....+.|+|||+.|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~---~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~---- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKL---DKGGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNTTQTLWFGNTV---- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTT---EESEEEEEECTTTCCEEEEEEESS-----CCCSEEEETTTTEEEEEETT----
T ss_pred CccceEECCCCCEEEEEcCCCcCC---CCCccEEEEcCCCCeEEEEEecCC-----CcceEEECCCCCEEEEEecC----
Confidence 467889999999986655321000 114789999999988655543322 35688999999988775210
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecCCC----------Ceeee
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP----------AVYTA 179 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt~~----------~~~~~ 179 (595)
...|+++|+ +++. ..+... .....
T Consensus 110 --------------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 110 --------------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp --------------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred --------------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence 124556666 4443 222111 11357
Q ss_pred eEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEE
Q 007620 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (595)
Q Consensus 180 ~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~ 259 (595)
+.|||||++|++..... ...|+++|..+++......... .....+.|+|||+. |+.
T Consensus 146 ~~~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~-l~~ 201 (353)
T 3vgz_A 146 LVADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKR-LYT 201 (353)
T ss_dssp EEEETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTE-EEE
T ss_pred EEECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCE-EEE
Confidence 89999999988876322 2379999998776544322110 11346889999984 544
Q ss_pred EEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-----CccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 260 ~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-----~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
. .....++++|. ..++....... ......+.|+|||..++.... ....|+++|+.++
T Consensus 202 ~------------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 202 T------------NADGELITIDT---ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNG 263 (353)
T ss_dssp E------------CTTSEEEEEET---TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTC
T ss_pred E------------cCCCeEEEEEC---CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCC
Confidence 3 11245667775 33343322211 122345789999987655431 2247999999874
Q ss_pred CCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecC
Q 007620 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (595)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (595)
+....... .. + ..+.|++||+.+++.... ...+. .+|+.+++........
T Consensus 264 --~~~~~~~~--~~----~--~~~~~s~dg~~l~v~~~~----~~~v~----------------~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 264 --NILAKVAA--PE----S--LAVLFNPARNEAYVTHRQ----AGKVS----------------VIDAKSYKVVKTFDTP 313 (353)
T ss_dssp --CEEEEEEC--SS----C--CCEEEETTTTEEEEEETT----TTEEE----------------EEETTTTEEEEEEECC
T ss_pred --cEEEEEEc--CC----C--ceEEECCCCCEEEEEECC----CCeEE----------------EEECCCCeEEEEEecC
Confidence 32222211 11 1 127899999988876532 22233 4677777654443221
Q ss_pred ccccceeeEEeeeCCCcccccccCCEEEEEEec
Q 007620 415 REKYFETAVALVFGQGEEDINLNQLKILTSKES 447 (595)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s 447 (595)
..+.. ..|++|++.++++...
T Consensus 314 -----~~~~~-------~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 -----THPNS-------LALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----SEEEE-------EEECTTSCEEEEEEEC
T ss_pred -----CCCCe-------EEEcCCCCEEEEEEcc
Confidence 11222 3578899988777655
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=147.91 Aligned_cols=243 Identities=10% Similarity=0.007 Sum_probs=150.1
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEEC--CCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~--~~g~~~~lt~~~~~ 83 (595)
+||+ +. +|+.+++|.... ..+..|.|||| +++|++..+.. +...+||++++ +++.. +++....
T Consensus 47 ~lw~--~~----~g~~~~lt~~~~-~~~~~~~~spd--~~l~~~~~~~g----~~~~~l~~~~~~~~g~~~-~l~~~~~- 111 (582)
T 3o4h_A 47 NAYL--YD----GGETVKLNREPI-NSVLDPHYGVG--RVILVRDVSKG----AEQHALFKVNTSRPGEEQ-RLEAVKP- 111 (582)
T ss_dssp EEEE--EE----TTEEEECCSSCC-SEECEECTTCS--EEEEEEECSTT----SCCEEEEEEETTSTTCCE-ECTTSCS-
T ss_pred eEEE--Ec----CCCcEeeecccc-cccccccCCCC--eEEEEeccCCC----CcceEEEEEeccCCCccc-cccCCCC-
Confidence 3555 55 888999985442 25889999999 68887764110 24568999999 65544 6765432
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
...+.|+|||+.+++.... ...+.++|
T Consensus 112 -----~~~~~~s~dg~~~~~~s~~------------------------------------------------~~~~~l~d 138 (582)
T 3o4h_A 112 -----MRILSGVDTGEAVVFTGAT------------------------------------------------EDRVALYA 138 (582)
T ss_dssp -----BEEEEEEECSSCEEEEEEC------------------------------------------------SSCEEEEE
T ss_pred -----ceeeeeCCCCCeEEEEecC------------------------------------------------CCCceEEE
Confidence 3467999999988876321 01122446
Q ss_pred C-CCCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 164 ~-~g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+ +|+.++|+.... ..+.|||||++|++.+..... ...|+++|+++++.+.|+....
T Consensus 139 ~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~---------~~~i~~~d~~~g~~~~l~~~~~------------- 195 (582)
T 3o4h_A 139 LDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGEG------------- 195 (582)
T ss_dssp EETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETT---------EEEEEEEETTTCCCEEECCSSC-------------
T ss_pred ccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCC---------CeEEEEEcCCCCCceEeecCCC-------------
Confidence 6 556666654322 578999999999988754321 2479999999888888764421
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCcccccee--------ecCCCcEEE
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS--------WCDDSLALV 314 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~--------wspDg~~l~ 314 (595)
....+.|||||+. |+ . . +. .....++++|+ ++++.+.+......+..+. ||||| .++
T Consensus 196 ~~~~~~~SpDG~~-l~-~-~-~~-------~~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 196 SFSSASISPGMKV-TA-G-L-ET-------AREARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp EEEEEEECTTSCE-EE-E-E-EC-------SSCEEEEEECT---TTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred ccccceECCCCCE-EE-E-c-cC-------CCeeEEEEEcC---CCCcEEEccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 1246899999984 44 2 1 11 11236888886 5566663333444555677 99999 444
Q ss_pred EEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+.... .+..+||.+ + .. .......+.. +.++ ||+.++...
T Consensus 261 ~~~~~-~g~~~l~~~---g--~~-~~~~~~~v~~---------~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 261 VVARR-EGRSAVFID---G--ER-VEAPQGNHGR---------VVLW-RGKLVTSHT 300 (582)
T ss_dssp EEEEE-TTEEEEEET---T--EE-ECCCSSEEEE---------EEEE-TTEEEEEEE
T ss_pred EEEEc-CCcEEEEEE---C--Ce-eccCCCceEE---------EEec-CCEEEEEEc
Confidence 43322 344566655 4 11 1112222322 6788 887765444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-12 Score=140.92 Aligned_cols=274 Identities=12% Similarity=0.058 Sum_probs=156.0
Q ss_pred eeeEEEecCCCCCCCCceeeecC---CCC--CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGY---PDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~---~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
+.||+++.... .+++.++|... ..+ .....++|||||++|||.+.++. ....+||++|+++|+....+.
T Consensus 133 ~~l~~~~~~~~-~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-----~e~~~i~v~dl~tg~~~~~~~ 206 (741)
T 1yr2_A 133 SQLLVRPADAP-VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG-----SDWRTVKFVGVADGKPLADEL 206 (741)
T ss_dssp CEEEEEETTSC-TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT-----CSEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCcc-CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC-----CceEEEEEEECCCCCCCCccC
Confidence 56788876410 14566665421 111 14678999999999999987531 223789999999998765521
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
.. ..+..+.|||| +.|+|........ .+. ..+ . ....+|
T Consensus 207 -~~----~~~~~~~wspD-~~l~~~~~~~~~~-----------------~~~------~~~-------~-----~~~~~v 245 (741)
T 1yr2_A 207 -KW----VKFSGLAWLGN-DALLYSRFAEPKE-----------------GQA------FQA-------L-----NYNQTV 245 (741)
T ss_dssp -EE----EESCCCEESTT-SEEEEEECCCC--------------------------------------C-----CCCCEE
T ss_pred -CC----ceeccEEEECC-CEEEEEEecCccc-----------------ccc------ccc-------C-----CCCCEE
Confidence 11 12368999999 9999975321100 000 000 0 013578
Q ss_pred EEEcC-CCC--eeecCCC----CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc--e-EEEeccCCC
Q 007620 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VRELCDLPP 229 (595)
Q Consensus 160 ~~~d~-~g~--~~~lt~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~-~~~l~~~~~ 229 (595)
|+.++ ++. .+.+... .....+.|||||++|++....... ...+|+++|++++ + .+.|.....
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEECCCEEEECSSS
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCcccEEecCCCC
Confidence 88888 443 2333221 245688999999999998754310 1358999999876 4 555543210
Q ss_pred CccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCC--Cceecccc-Cccccceee
Q 007620 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKL-DLRFRSVSW 306 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~--~~~~l~~~-~~~~~~~~w 306 (595)
.....++|||+. |++... +. .....|+++++ +++ +.+.++.. ...+..+.|
T Consensus 318 --------------~~~~~~~~dg~~-l~~~s~-~~-------~~~~~l~~~d~---~~~~~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 318 --------------AQWDFVDGVGDQ-LWFVSG-DG-------APLKKIVRVDL---SGSTPRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp --------------SCEEEEEEETTE-EEEEEC-TT-------CTTCEEEEEEC---SSSSCEEEEEECCCSSEEEEEEE
T ss_pred --------------ceEEEEeccCCE-EEEEEC-CC-------CCCCEEEEEeC---CCCccccEEEecCCCCeEEEEEE
Confidence 111234588874 655521 11 11346777776 432 34555432 223445566
Q ss_pred cCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe-e--cccccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-D--RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 307 spDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~-~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
+ +..+++... +.+..+||++++++ +..+.|. . ..+.. +.+++||+.+++....
T Consensus 372 ~--~~~lv~~~~-~dg~~~l~~~~~~g--~~~~~l~~~~~~~v~~---------~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 372 A--GNRLFASYI-HDAKSQVLAFDLDG--KPAGAVSLPGIGSASG---------LSGRPGDRHAYLSFSS 427 (741)
T ss_dssp E--BTEEEEEEE-ETTEEEEEEEETTS--CEEEECBCSSSCEEEE---------EECCBTCSCEEEEEEE
T ss_pred E--CCEEEEEEE-ECCEEEEEEEeCCC--CceeeccCCCCeEEEE---------eecCCCCCEEEEEEcC
Confidence 6 333443322 24567899999876 3334442 1 11222 6788899888777643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-12 Score=127.28 Aligned_cols=88 Identities=8% Similarity=-0.121 Sum_probs=57.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+++++.. .+|+..+++..........+.|||||+ |+++... .....|+++++++|+.+++......
T Consensus 17 ~i~v~~~d~--~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~-- 84 (347)
T 3hfq_A 17 GIYQGTLDT--TAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAP-- 84 (347)
T ss_dssp EEEEEEEET--TTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEE--
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecC--
Confidence 466665541 267666654333344577899999998 6666542 1347899999988887666542110
Q ss_pred cccccceEEecCCcEEEEEe
Q 007620 86 NAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~ 105 (595)
......+.|+|||+.|++..
T Consensus 85 ~~~p~~~a~spdg~~l~~~~ 104 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSAN 104 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEe
Confidence 11345789999999988863
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-11 Score=117.93 Aligned_cols=284 Identities=8% Similarity=0.056 Sum_probs=178.3
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
...-.+++||++|+|.... ...+||.++.++..+++|+... .--++++|+.|+|........
T Consensus 16 ~n~g~~~~~g~~iy~~n~~--------d~~~ly~~~~dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~- 77 (302)
T 3s25_A 16 YNAGLFCESDGEVFFSNTN--------DNGRLYAMNIDGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKI- 77 (302)
T ss_dssp GGTTCEEEETTEEEEEEGG--------GTTEEEEEETTSCSCEEEEEEE---------EEEEEECSSEEEEEEECC----
T ss_pred ecceEEEEeCCEEEEEeCC--------CCceEEEEcCCCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcc-
Confidence 3344678999999998653 2478999999999999996421 234689999999974321000
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCCCeeeeeEECCCCCeEEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~~~~~~~~SpDg~~l~~ 191 (595)
. . . ..+. .....||+++++| +.++|+... ...|+++|++|+|
T Consensus 78 ---------------~-~-----~---~~~~----------~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~ 120 (302)
T 3s25_A 78 ---------------T-S-----Q---TFFS----------YDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYY 120 (302)
T ss_dssp ---------------------------CCSS----------CCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEE
T ss_pred ---------------c-c-----c---ceec----------cCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEE
Confidence 0 0 0 0000 0246799999977 556666543 2368899999999
Q ss_pred EEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccc
Q 007620 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~ 271 (595)
+...+. ....|++++++|...++|+.... ..++++|+ .|||.. .
T Consensus 121 ~~~~~~---------~~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~-~iy~t~---~------ 164 (302)
T 3s25_A 121 LHYDTQ---------TATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDR-YFYYNN---P------ 164 (302)
T ss_dssp EEESSS---------SCEEEEEEETTSCCCEEEESSCC-----------------CCSEEETT-EEEEEC---T------
T ss_pred EeecCC---------CCceEEEEECCCCCeEEEeCCCc-----------------eEeeEECC-EEEEEe---C------
Confidence 962111 13589999999888888765421 23466776 477761 1
Q ss_pred cCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccC
Q 007620 272 VSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYS 351 (595)
Q Consensus 272 ~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~ 351 (595)
....|++.++ +|+..+.|.... ...+ ++|++..|++..+.. ..+|+++++++ ...+.|++...
T Consensus 165 --g~~~Iy~~~l---~g~~~~~l~~~~--~~~~-~~P~g~~iy~t~~~~--~~~I~~~~ldG--~~~~~Lt~~~~----- 227 (302)
T 3s25_A 165 --KNGQLYRYDT---ASQSEALFYDCN--CYKP-VVLDDTNVYYMDVNR--DNAIVHVNINN--PNPVVLTEANI----- 227 (302)
T ss_dssp --TTCCEEEEET---TTTEEEEEECSC--EEEE-EEEETTEEEEEEGGG--TTEEEEECSSS--CCCEECSCSCE-----
T ss_pred --CCceEEEEEC---CCCCEEEEeCCC--ccce-eeecCCEEEEEEcCC--CcEEEEEECCC--CCeEEEeCCCc-----
Confidence 1346787776 666666665422 2223 459999888876532 25899999999 45566654322
Q ss_pred CCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCc
Q 007620 352 DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGE 431 (595)
Q Consensus 352 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 431 (595)
+.++++|+.||+..... ...| +++++.....++|.... .
T Consensus 228 ------~~~~~~g~~Iy~~~~~~---~~~i----------------~~~~~DG~~r~~l~~~~-------~--------- 266 (302)
T 3s25_A 228 ------EHYNVYGSLIFYQRGGD---NPAL----------------CVVKNDGTGFKELAKGE-------F--------- 266 (302)
T ss_dssp ------EEEEEETTEEEEEECSS---SCEE----------------EEEETTSCCCEEEEESC-------E---------
T ss_pred ------ceEEECCCEEEEEECCC---CcEE----------------EEEECCCCccEEeeCCc-------c---------
Confidence 45778899988764321 2334 45677555556664321 1
Q ss_pred ccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEe
Q 007620 432 EDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (595)
Q Consensus 432 ~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt 468 (595)
..+++.+++++++..... .++.+.+.+...++|.
T Consensus 267 ~~i~i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 267 CNINVTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp EEEEECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred ceEEEeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 123556789988864332 3888887665555554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-10 Score=114.02 Aligned_cols=257 Identities=9% Similarity=-0.014 Sum_probs=148.1
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCC
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPD 82 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~ 82 (595)
..|.+.|+. +++.......... .. .+.|||||++|++... ....|+++|+++++. ..+....
T Consensus 20 ~~v~~~d~~----~~~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~- 83 (331)
T 3u4y_A 20 RRISFFSTD----TLEILNQITLGYD-FV-DTAITSDCSNVVVTSD---------FCQTLVQIETQLEPPKVVAIQEGQ- 83 (331)
T ss_dssp TEEEEEETT----TCCEEEEEECCCC-EE-EEEECSSSCEEEEEES---------TTCEEEEEECSSSSCEEEEEEECS-
T ss_pred CeEEEEeCc----ccceeeeEEccCC-cc-eEEEcCCCCEEEEEeC---------CCCeEEEEECCCCceeEEecccCC-
Confidence 357888887 6776555433332 44 8999999998777653 246899999998874 3332222
Q ss_pred ccccccccc-eEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 83 ICLNAVFGS-FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 83 ~~~~~~~~~-~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
.... +.|+|||+.|+ .... .+ ....|++
T Consensus 84 -----~~~~~~~~s~dg~~l~-~~~~---------------------~~------------------------~~~~i~v 112 (331)
T 3u4y_A 84 -----SSMADVDITPDDQFAV-TVTG---------------------LN------------------------HPFNMQS 112 (331)
T ss_dssp -----SCCCCEEECTTSSEEE-ECCC---------------------SS------------------------SSCEEEE
T ss_pred -----CCccceEECCCCCEEE-EecC---------------------CC------------------------CcccEEE
Confidence 2335 89999999888 4110 00 0126777
Q ss_pred EcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCccccee-EEEEcCCC-ceEEEec--cCCCCccCCc
Q 007620 162 GSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK-VQVWTTDG-KLVRELC--DLPPAEDIPV 235 (595)
Q Consensus 162 ~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~-l~~~d~~g-~~~~~l~--~~~~~~~~~~ 235 (595)
+|+ +++.. .+........++|||||++|+++.... .. +.+|+++. +...... ..+.
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~------ 174 (331)
T 3u4y_A 113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFISG------ 174 (331)
T ss_dssp EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEECS------
T ss_pred EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccccC------
Confidence 887 45433 333333446899999999988775432 24 66666552 2221110 0000
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc---eeccccCccccceeecCCCcE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~~~~~~~~~~wspDg~~ 312 (595)
......+.|+|||+. ++... .....+.+++. ..++. ............+.|+|||+.
T Consensus 175 -----~~~~~~~~~spdg~~-l~v~~-----------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 175 -----GTRPFNITFTPDGNF-AFVAN-----------LIGNSIGILET---QNPENITLLNAVGTNNLPGTIVVSRDGST 234 (331)
T ss_dssp -----SSSEEEEEECTTSSE-EEEEE-----------TTTTEEEEEEC---SSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred -----CCCccceEECCCCCE-EEEEe-----------CCCCeEEEEEC---CCCcccceeeeccCCCCCceEEECCCCCE
Confidence 012346889999983 44431 11346777786 33444 222233345677899999997
Q ss_pred EEEEEeecccceEEEEEeCCCCCCCcEEEe--ecccccccCCC--CCCCeeeCCCCCEEEEEee
Q 007620 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDP--GSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~--~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~ 372 (595)
++.... ....|+++|+.++ +.+.+. ..... ....+ +...+.|+|||+.|++...
T Consensus 235 l~v~~~---~~~~i~~~d~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 235 VYVLTE---STVDVFNFNQLSG--TLSFVKSFGHGLL-IDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp EEEECS---SEEEEEEEETTTT--EEEEEEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred EEEEEc---CCCEEEEEECCCC--ceeeecccccccc-cCCCCcccccceEECCCCCEEEEecC
Confidence 654421 2346889999873 333331 11100 00000 0112689999999887764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-10 Score=115.05 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=158.4
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccccccc----CCCceEEEEEECCCCceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNV----SSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~----~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
.||-++.. ++..++|+. ....-++|+|++|+|+......+.. ......|+++++++++.++|+...
T Consensus 38 ~ly~~~~d----g~~~~~l~~------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~ 107 (302)
T 3s25_A 38 RLYAMNID----GSNIHKLSN------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP 107 (302)
T ss_dssp EEEEEETT----SCSCEEEEE------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC
T ss_pred eEEEEcCC----CCCCEEccC------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC
Confidence 48888876 678888872 2235679999999999865310000 002578999999999888886432
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
...|+++|+.|+|.... .. ....||+
T Consensus 108 ---------~~~~s~~g~~Iy~~~~~--------------------~~-------------------------~~~~Iy~ 133 (302)
T 3s25_A 108 ---------CIYASLIGNYIYYLHYD--------------------TQ-------------------------TATSLYR 133 (302)
T ss_dssp ---------EEEEEEETTEEEEEEES--------------------SS-------------------------SCEEEEE
T ss_pred ---------ccEEEEeCCEEEEEeec--------------------CC-------------------------CCceEEE
Confidence 24789999999996200 00 1357999
Q ss_pred EcCCC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 162 GSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 162 ~d~~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
++++| +.++|+.... ..++|+|+.|+|+.... ..|++++++|+..+.|...+.
T Consensus 134 ~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g~------------~~Iy~~~l~g~~~~~l~~~~~----------- 187 (302)
T 3s25_A 134 IRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPKN------------GQLYRYDTASQSEALFYDCNC----------- 187 (302)
T ss_dssp EETTSCCCEEEESSCC---CCSEEETTEEEEECTTT------------CCEEEEETTTTEEEEEECSCE-----------
T ss_pred EECCCCCeEEEeCCCc---eEeeEECCEEEEEeCCC------------ceEEEEECCCCCEEEEeCCCc-----------
Confidence 99987 6677775533 45788999999996522 379999999988887754321
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
...+.|++. .|||....+ ...|+..++ +|+..+.|+.... +.|+|++..|++....
T Consensus 188 -----~~~~~P~g~-~iy~t~~~~----------~~~I~~~~l---dG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~- 243 (302)
T 3s25_A 188 -----YKPVVLDDT-NVYYMDVNR----------DNAIVHVNI---NNPNPVVLTEANI----EHYNVYGSLIFYQRGG- 243 (302)
T ss_dssp -----EEEEEEETT-EEEEEEGGG----------TTEEEEECS---SSCCCEECSCSCE----EEEEEETTEEEEEECS-
T ss_pred -----cceeeecCC-EEEEEEcCC----------CcEEEEEEC---CCCCeEEEeCCCc----ceEEECCCEEEEEECC-
Confidence 112348887 477763211 136777786 7767777764332 5689999988775422
Q ss_pred ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 321 ~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
....|+.++++|. .++.|..... ...+..+.+|||+..
T Consensus 244 -~~~~i~~~~~DG~--~r~~l~~~~~-----------~~i~i~~d~Iy~td~ 281 (302)
T 3s25_A 244 -DNPALCVVKNDGT--GFKELAKGEF-----------CNINVTSQYVYFTDF 281 (302)
T ss_dssp -SSCEEEEEETTSC--CCEEEEESCE-----------EEEEECSSEEEEEET
T ss_pred -CCcEEEEEECCCC--ccEEeeCCcc-----------ceEEEeCCEEEEEEC
Confidence 2258999999984 4566654322 234456677777753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-10 Score=116.71 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=55.2
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.+|+++++.. .+|+.++++.+ .........|||||++|++....+.. .+...+|.++.++|+.+++.......
T Consensus 27 ~~i~~~~~d~--~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~----~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 27 KGIYTFRFNE--ETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKD----QAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CEEEEEEEET--TTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSST----TCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCEEEEEEeC--CCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCC----CCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 3677877642 37888777755 44456677999999998877653100 24556787887778877775432110
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....+.+ ||+.|++.
T Consensus 100 --~~p~~~~~--dg~~l~~~ 115 (361)
T 3scy_A 100 --ADPCYLTT--NGKNIVTA 115 (361)
T ss_dssp --SCEEEEEE--CSSEEEEE
T ss_pred --CCcEEEEE--CCCEEEEE
Confidence 01223444 88887775
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-10 Score=113.04 Aligned_cols=266 Identities=9% Similarity=0.028 Sum_probs=161.0
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|+++|+++++......... .+..+.|+|||+.|++...
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~---------------------------------- 51 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANA---------------------------------- 51 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEG----------------------------------
T ss_pred CCEEEEEECCCCeEEEEeecCC-----CcceEEECCCCCEEEEECC----------------------------------
Confidence 4678999999888665543332 4568999999998877521
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
....|.++|+ +++.. .+........++|||||++|+++.... ..|++||+.+
T Consensus 52 --------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~------------~~v~v~d~~~ 105 (391)
T 1l0q_A 52 --------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS------------STLSVIDTTS 105 (391)
T ss_dssp --------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTT
T ss_pred --------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCC------------CEEEEEECCC
Confidence 0135667777 55433 333333556899999999998886432 3799999987
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~ 298 (595)
++........ .....+.|+|||+. |++.. .....++++|+ ..++........
T Consensus 106 ~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~~-----------~~~~~v~~~d~---~~~~~~~~~~~~ 157 (391)
T 1l0q_A 106 NTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTN-----------NGDKTVSVINT---VTKAVINTVSVG 157 (391)
T ss_dssp TEEEEEEECS-------------SSEEEEEECTTSSE-EEEEE-----------TTTTEEEEEET---TTTEEEEEEECC
T ss_pred CeEEEEEeCC-------------CCcceEEECCCCCE-EEEEe-----------CCCCEEEEEEC---CCCcEEEEEecC
Confidence 7654432211 11346889999984 43331 12346778886 333443333333
Q ss_pred ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEeeecCC
Q 007620 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (595)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~ 376 (595)
.....+.|+|||..++... ... ..|+++|+.++ +....... .... +.|+++|+.+++...+..
T Consensus 158 ~~~~~~~~~~dg~~l~~~~-~~~--~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~~~~~- 222 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVAN-FDS--MSISVIDTVTN--SVIDTVKVEAAPSG---------IAVNPEGTKAYVTNVDKY- 222 (391)
T ss_dssp SSEEEEEECTTSSEEEEEE-TTT--TEEEEEETTTT--EEEEEEECSSEEEE---------EEECTTSSEEEEEEECSS-
T ss_pred CCcceEEECCCCCEEEEEe-CCC--CEEEEEECCCC--eEEEEEecCCCccc---------eEECCCCCEEEEEecCcC-
Confidence 4456789999998764432 112 36888999873 32222221 1222 789999998887764211
Q ss_pred cccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEE
Q 007620 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (595)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~ 456 (595)
...++ .+|+.+++......... .+.. ..|+++++.++++.+.. ..+.+
T Consensus 223 -~~~v~----------------~~d~~~~~~~~~~~~~~-----~~~~-------~~~s~dg~~l~~s~~~d---~~v~v 270 (391)
T 1l0q_A 223 -FNTVS----------------MIDTGTNKITARIPVGP-----DPAG-------IAVTPDGKKVYVALSFX---NTVSV 270 (391)
T ss_dssp -CCEEE----------------EEETTTTEEEEEEECCS-----SEEE-------EEECTTSSEEEEEETTT---TEEEE
T ss_pred -CCcEE----------------EEECCCCeEEEEEecCC-----CccE-------EEEccCCCEEEEEcCCC---CEEEE
Confidence 12232 35776665444332211 1111 35788998887765332 56899
Q ss_pred EeCCCCceee
Q 007620 457 LSWPLKKSSQ 466 (595)
Q Consensus 457 ~d~~~~~~~~ 466 (595)
+|+..++...
T Consensus 271 ~d~~~~~~~~ 280 (391)
T 1l0q_A 271 IDTATNTITA 280 (391)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9988776543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-10 Score=112.78 Aligned_cols=263 Identities=12% Similarity=0.087 Sum_probs=138.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|++.++.. +|+.+.+..+.....+....|||||++|++.... ++.-.+|-++.++++.+.+......
T Consensus 16 ~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~-- 83 (343)
T 1ri6_A 16 QIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESALP-- 83 (343)
T ss_dssp EEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEECS--
T ss_pred eEEEEEECC---CCcEEEeeeEecCCCCceEEECCCCCEEEEeecC-------CCeEEEEEecCCCCceeeccccccC--
Confidence 577888852 4554444433444467789999999998876642 1334445455447776655332211
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
..+..+.|+|||+.|++.... ...|.++++
T Consensus 84 -~~~~~~~~s~dg~~l~~~~~~------------------------------------------------~~~i~~~d~~ 114 (343)
T 1ri6_A 84 -GSLTHISTDHQGQFVFVGSYN------------------------------------------------AGNVSVTRLE 114 (343)
T ss_dssp -SCCSEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEEEE
T ss_pred -CCCcEEEEcCCCCEEEEEecC------------------------------------------------CCeEEEEECC
Confidence 135688999999988876321 012333333
Q ss_pred CCC---ee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceEEEec--cCCCCccCCccc
Q 007620 165 DGT---AK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELC--DLPPAEDIPVCY 237 (595)
Q Consensus 165 ~g~---~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~l~--~~~~~~~~~~~~ 237 (595)
+|. .. .+........++|+|||++|++..... ..+.+||+.+ ++...+. ......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~~~~~~------ 176 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTTVE------ 176 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEECST------
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCC------------CEEEEEEecCCCceeeecccccccCC------
Confidence 331 11 122222345789999999998775322 3688888875 5544322 110000
Q ss_pred cccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc---cC------ccccceeecC
Q 007620 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD------LRFRSVSWCD 308 (595)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~---~~------~~~~~~~wsp 308 (595)
....+.+.|+|||+. ++... .....+.+++.+. ..++...+.. .. .....+.|+|
T Consensus 177 ---~~~~~~~~~~pdg~~-l~~~~-----------~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 177 ---GAGPRHMVFHPNEQY-AYCVN-----------ELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp ---TCCEEEEEECTTSSE-EEEEE-----------TTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred ---CCCcceEEECCCCCE-EEEEe-----------CCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEECC
Confidence 011345789999983 44431 1123455556411 1223322111 11 1223588999
Q ss_pred CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 309 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 309 Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
||+.++... ...+ .|.++|++...+..+.+........ + ..+.|++||+.|++..
T Consensus 241 dg~~l~v~~-~~~~--~i~v~d~~~~~~~~~~~~~~~~~~~---~--~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 241 DGRHLYACD-RTAS--LITVFSVSEDGSVLSKEGFQPTETQ---P--RGFNVDHSGKYLIAAG 295 (343)
T ss_dssp TSSEEEEEE-TTTT--EEEEEEECTTSCCEEEEEEEECSSS---C--CCEEECTTSSEEEEEC
T ss_pred CCCEEEEEe-cCCC--EEEEEEEcCCCCceEEeeeecCCCc---c--ceEEECCCCCEEEEec
Confidence 998765442 1223 4555665521123333321111110 1 1289999999888765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-10 Score=112.14 Aligned_cols=254 Identities=11% Similarity=-0.029 Sum_probs=150.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|++.|+. +++....... +.....+.|||||++|++... ....|+++|+++++............
T Consensus 70 ~v~~~d~~----~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~~~ 134 (353)
T 3vgz_A 70 VVYRLDPV----TLEVTQAIHN--DLKPFGATINNTTQTLWFGNT---------VNSAVTAIDAKTGEVKGRLVLDDRKR 134 (353)
T ss_dssp EEEEECTT----TCCEEEEEEE--SSCCCSEEEETTTTEEEEEET---------TTTEEEEEETTTCCEEEEEESCCCCC
T ss_pred cEEEEcCC----CCeEEEEEec--CCCcceEEECCCCCEEEEEec---------CCCEEEEEeCCCCeeEEEEecCCCcc
Confidence 48888887 6665544422 234778999999998777653 24689999999988644433321100
Q ss_pred -----cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 86 -----NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 86 -----~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
......+.|+|||+.|++.... ....|+
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------------------------------------~~~~i~ 167 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIG-----------------------------------------------KESVIW 167 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEES-----------------------------------------------SSCEEE
T ss_pred ccccCCCCCceEEECCCCCEEEEEecC-----------------------------------------------CCceEE
Confidence 0013468999999988775210 023577
Q ss_pred EEcC-CCCee-ecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccc
Q 007620 161 LGSL-DGTAK-DFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (595)
Q Consensus 161 ~~d~-~g~~~-~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~ 237 (595)
++|+ +++.. .+. .......+.|+|||++|++... ...++++|+.+++...........
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~~------ 228 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------------DGELITIDTADNKILSRKKLLDDG------ 228 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCSS------
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCCC------
Confidence 7887 45433 333 2223457899999999888753 237889999877654332211000
Q ss_pred cccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEE
Q 007620 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
.......+.|+|||+. ++... .....++++|. ..++......... ...+.|+|||..++...
T Consensus 229 --~~~~~~~~~~s~dg~~-l~~~~-----------~~~~~v~~~d~---~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 229 --KEHFFINISLDTARQR-AFITD-----------SKAAEVLVVDT---RNGNILAKVAAPE-SLAVLFNPARNEAYVTH 290 (353)
T ss_dssp --SCCCEEEEEEETTTTE-EEEEE-----------SSSSEEEEEET---TTCCEEEEEECSS-CCCEEEETTTTEEEEEE
T ss_pred --CCcccceEEECCCCCE-EEEEe-----------CCCCEEEEEEC---CCCcEEEEEEcCC-CceEEECCCCCEEEEEE
Confidence 0001224789999984 54431 11246777785 3344433222222 25689999998655443
Q ss_pred eecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
. ....|+++|+.++ +....+. ..... +.|++||+.+++...
T Consensus 291 ~---~~~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 291 R---QAGKVSVIDAKSY--KVVKTFDTPTHPNS---------LALSADGKTLYVSVK 333 (353)
T ss_dssp T---TTTEEEEEETTTT--EEEEEEECCSEEEE---------EEECTTSCEEEEEEE
T ss_pred C---CCCeEEEEECCCC--eEEEEEecCCCCCe---------EEEcCCCCEEEEEEc
Confidence 1 1237889998873 2222221 12222 789999998887754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-10 Score=112.17 Aligned_cols=292 Identities=10% Similarity=0.031 Sum_probs=158.1
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
++.|++++++++.+.. ....|.++|+++++.......... .. .+.|+|||+.|++....
T Consensus 2 ~~~~~~~~~~~~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~~~~------- 60 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVEQ---------HLRRISFFSTDTLEILNQITLGYD----FV-DTAITSDCSNVVVTSDF------- 60 (331)
T ss_dssp -----CCCCEEEEEEG---------GGTEEEEEETTTCCEEEEEECCCC----EE-EEEECSSSCEEEEEEST-------
T ss_pred ceeEcCCCCEEEEEec---------CCCeEEEEeCcccceeeeEEccCC----cc-eEEEcCCCCEEEEEeCC-------
Confidence 5678888887655442 246899999999987655443321 34 88999999988775210
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe--eecCCCCeeee-eEECCCCCeEE
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTPAVYTA-VEPSPDQKYVL 190 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~--~~lt~~~~~~~-~~~SpDg~~l~ 190 (595)
...|+++|+ +++. +.+........ ++|||||++|+
T Consensus 61 -----------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 99 (331)
T 3u4y_A 61 -----------------------------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99 (331)
T ss_dssp -----------------------------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred -----------------------------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence 135777888 5553 33433333344 89999999998
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCccc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~ 270 (595)
+..... ....|++||+.+++........ .....+.|+|||+. |+... .+
T Consensus 100 -~~~~~~---------~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~-l~~~~-~~------ 148 (331)
T 3u4y_A 100 -TVTGLN---------HPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNG-LILID-RS------ 148 (331)
T ss_dssp -ECCCSS---------SSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSC-EEEEE-ET------
T ss_pred -EecCCC---------CcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCE-EEEEe-cC------
Confidence 432210 0127999999876654332111 11246889999984 54432 11
Q ss_pred ccCCcce-EEeccCCCCCCCCce----eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc---EEEe
Q 007620 271 EVSPRDI-IYTQPAEPAEGEKPE----ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP---RVLF 342 (595)
Q Consensus 271 ~~~~~~~-~~~~d~~~~~g~~~~----~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~---~~l~ 342 (595)
... +.++++ ..++... ...........+.|+|||+.++.... ....|+++|+.++ +. ...+
T Consensus 149 ----~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~--~~~~~~~~~ 217 (331)
T 3u4y_A 149 ----SANTVRRFKI--DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNP--ENITLLNAV 217 (331)
T ss_dssp ----TTTEEEEEEE--CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSST--TSCEEEEEE
T ss_pred ----CCceEEEEEE--CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCC--cccceeeec
Confidence 122 444443 1112221 11122233567889999986554432 2237888898874 32 1112
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccc-ee
Q 007620 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF-ET 421 (595)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~-~~ 421 (595)
... . .| ..+.|+|||+.+++.... ...++ .+|+.+++.+.+......-.. ..
T Consensus 218 ~~~--~---~~--~~~~~spdg~~l~v~~~~----~~~i~----------------~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 218 GTN--N---LP--GTIVVSRDGSTVYVLTES----TVDVF----------------NFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp ECS--S---CC--CCEEECTTSSEEEEECSS----EEEEE----------------EEETTTTEEEEEEEEECCCCCCCG
T ss_pred cCC--C---CC--ceEEECCCCCEEEEEEcC----CCEEE----------------EEECCCCceeeecccccccccCCC
Confidence 111 0 01 127899999988876532 22233 467777766443211100000 00
Q ss_pred eEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCc
Q 007620 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (595)
Q Consensus 422 ~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~ 463 (595)
.. .......|++|++++++.... -..+.++++....
T Consensus 271 ~~---~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 271 PL---FGANQMALNKTETKLFISANI---SRELKVFTISGKV 306 (331)
T ss_dssp GG---TTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCE
T ss_pred Cc---ccccceEECCCCCEEEEecCC---CCcEEEEEecCCc
Confidence 00 000123689999988776533 3468888876543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-09 Score=109.22 Aligned_cols=267 Identities=11% Similarity=0.002 Sum_probs=147.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCC-cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|++.|+. +++......+.... ....+.|||||++|++... ....|+++|+.+++..........
T Consensus 11 ~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTE----KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETT----TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECC----CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---------CCCeEEEEECCCCCeEeeEEcCCc
Confidence 468889987 66555443333311 3678999999998877653 246899999998886543222210
Q ss_pred c-ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 84 C-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 84 ~-~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
. .......+.|+|||+.|++..... +. . .+. .. ....+|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~---------------------~~------~-------~~~--~~-~~~~~i~v~ 120 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPV---------------------RL------E-------LTH--FE-VQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEE---------------------EE------C-------SSC--EE-ECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccc---------------------cc------c-------ccc--cc-ccCceEEEE
Confidence 0 001245789999999888862100 00 0 000 00 013578888
Q ss_pred cC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccc
Q 007620 163 SL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~ 240 (595)
|+ +++.. .+..+.....+.|||||++|++.. ..++++|+.+++.........
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~~----------- 174 (337)
T 1pby_B 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQS----------- 174 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTT-----------
T ss_pred ECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeeccc-----------
Confidence 88 45433 333333345688999999998872 168899998776543322110
Q ss_pred ccCCCCceeecCCCeeEEEEE------------eecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceee
Q 007620 241 REGMRSISWRADKPSTLYWVE------------AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSW 306 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~------------~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~w 306 (595)
......|+|||+. |+... ....+....-......++++|. ..++...+. ........+.|
T Consensus 175 --~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 175 --WEAETYAQPDVLA-VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp --TTTTTBCCCBCCC-CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred --cCCCceeCCCccE-EeeeccCCCceeeeeeccccccccccccccccceEEEeC---CCCCceEeecCCCCCceeeEEE
Confidence 0123467777763 22110 0000000000001114667775 434443222 12223456899
Q ss_pred cCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 307 spDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
+|||+.++... ..|+++|+.++ +...... ..... +.|++||+.+++.
T Consensus 249 s~dg~~l~~~~------~~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~~ 297 (337)
T 1pby_B 249 NPAKTRAFGAY------NVLESFDLEKN--ASIKRVPLPHSYYS---------VNVSTDGSTVWLG 297 (337)
T ss_dssp CTTSSEEEEEE------SEEEEEETTTT--EEEEEEECSSCCCE---------EEECTTSCEEEEE
T ss_pred CCCCCEEEEeC------CeEEEEECCCC--cCcceecCCCceee---------EEECCCCCEEEEE
Confidence 99998766542 37999999873 2222222 11222 7899999988775
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-09 Score=109.99 Aligned_cols=322 Identities=11% Similarity=0.044 Sum_probs=174.4
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc-c
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-C 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~-~ 84 (595)
.||..|.. ++..+.+..++.......+.||| +..++++... ...|+++|+.+++..+....... .
T Consensus 102 ~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~---------~~~i~~~d~~~g~~~~~~~~~~~~~ 167 (433)
T 3bws_A 102 KLIALDKE----GITHRFISRFKTGFQPKSVRFID-NTRLAIPLLE---------DEGMDVLDINSGQTVRLSPPEKYKK 167 (433)
T ss_dssp CEEECCBT----TCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTT---------SSSEEEEETTTCCEEEECCCHHHHT
T ss_pred EEEEECCC----CCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCC---------CCeEEEEECCCCeEeeecCcccccc
Confidence 45555554 44434444333444567899999 5567776532 35688899999887664322100 0
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
....+..+.|+++|+.++.... ...|+++++
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~-------------------------------------------------d~~v~~~d~ 198 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQ-------------------------------------------------ANAVHVFDL 198 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGG-------------------------------------------------GTEEEEEET
T ss_pred cCCceeEEEEcCCCEEEEEECC-------------------------------------------------CCEEEEEEC
Confidence 0113557899999886554310 134666676
Q ss_pred -CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 165 -DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 165 -~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+++. ..+. .......++|+|||++|+++.... ..|.+||+.+++........
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~i~~~d~~~~~~~~~~~~~------------- 253 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS------------EDISVIDRKTKLEIRKTDKI------------- 253 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT------------TEEEEEETTTTEEEEECCCC-------------
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC------------CcEEEEECCCCcEEEEecCC-------------
Confidence 4433 2332 233456889999999998776322 37899998876553322111
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
.....+.|+|||+. |+... .+.+... .....++++++ ..++.............+.|+||+..++....
T Consensus 254 ~~~~~~~~~~~g~~-l~~~~-~~~~~~~---~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--- 322 (433)
T 3bws_A 254 GLPRGLLLSKDGKE-LYIAQ-FSASNQE---SGGGRLGIYSM---DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--- 322 (433)
T ss_dssp SEEEEEEECTTSSE-EEEEE-EESCTTC---SCCEEEEEEET---TTTEEEEEEEEEECEEEEEECSSTTEEEEEET---
T ss_pred CCceEEEEcCCCCE-EEEEE-CCCCccc---cCCCeEEEEEC---CCCcEEeeccCCCCcceEEECCCCCEEEEEec---
Confidence 11345789999973 44432 1111100 12346778886 33444433333345567899999986554421
Q ss_pred cceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEeeecCCc-ccEEEEecCCCCCCCCcceeE
Q 007620 322 SQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE-QIYILLNGRGFTPEGNIPFLD 398 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~-~~~l~~~~~g~~~~~~~~~l~ 398 (595)
....|.++|+.++ +...... ..+.. +.|+++|+.+++........ ...++ .+ .....+.
T Consensus 323 ~~~~v~v~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~~~~~~~~~~~~~~~-~g------~~dg~v~ 384 (433)
T 3bws_A 323 CCSKIEVYDLKEK--KVQKSIPVFDKPNT---------IALSPDGKYLYVSCRGPNHPTEGYLK-KG------LVLGKVY 384 (433)
T ss_dssp TTTEEEEEETTTT--EEEEEEECSSSEEE---------EEECTTSSEEEEEECCCCCTTTCTTS-CC------SSCCEEE
T ss_pred CCCEEEEEECCCC--cEEEEecCCCCCCe---------EEEcCCCCEEEEEecCCCcccccccc-cc------ccceEEE
Confidence 1237888898873 3222222 12222 78999999888776432100 00000 00 0001233
Q ss_pred eeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeC
Q 007620 399 LFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (595)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~ 459 (595)
.+|+.+++........ ..+.. ..|+++++.+++.... . ..++++++
T Consensus 385 ~~d~~~~~~~~~~~~~-----~~~~~-------~~~s~dg~~l~~~~~~-d--~~i~v~~~ 430 (433)
T 3bws_A 385 VIDTTTDTVKEFWEAG-----NQPTG-------LDVSPDNRYLVISDFL-D--HQIRVYRR 430 (433)
T ss_dssp EEETTTTEEEEEEECS-----SSEEE-------EEECTTSCEEEEEETT-T--TEEEEEEE
T ss_pred EEECCCCcEEEEecCC-----CCCce-------EEEcCCCCEEEEEECC-C--CeEEEEEe
Confidence 5677777655443321 11221 3578898887665432 2 34666664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-09 Score=107.63 Aligned_cols=300 Identities=10% Similarity=0.001 Sum_probs=148.5
Q ss_pred CceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccc
Q 007620 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (595)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 139 (595)
..-.+|.+|.++|+...+...... .....+.|+|||+ |++.... +
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~~----------------------~--------- 60 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDKE----------------------D--------- 60 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEEE----------------------T---------
T ss_pred CCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEec----------------------C---------
Confidence 346688888888887665332211 1356799999999 6665210 0
Q ss_pred ccccCcCCccceEEeecceEEEEcC-CCCeeecCC----CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~----~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
....|+++++ +|+.+.+.. ......++|||||++|++..... ..+.+|
T Consensus 61 ---------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------------~~v~v~ 113 (347)
T 3hfq_A 61 ---------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------------GTAEVM 113 (347)
T ss_dssp ---------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------------TEEEEE
T ss_pred ---------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------------CEEEEE
Confidence 0235666776 455444432 22345789999999998886322 357777
Q ss_pred cCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee
Q 007620 215 TTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (595)
Q Consensus 215 d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 293 (595)
++. ++..+.+.........|. ..........+.|+|||+ ++... ...+.++++++ ..+++...
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~--l~v~~-----------~~~~~v~~~~~--~~~g~~~~ 177 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR--LAVID-----------LGSDKVYVYNV--SDAGQLSE 177 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC--EEEEE-----------TTTTEEEEEEE--CTTSCEEE
T ss_pred EeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc--EEEEe-----------CCCCEEEEEEE--CCCCcEEE
Confidence 764 444444332211000000 000000122478999998 54331 11235666665 11334333
Q ss_pred ccc----cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeeccc-ccccCC-CCCCCeeeCCCCCEE
Q 007620 294 LHK----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSD-PGSPMMTRTSTGTNV 367 (595)
Q Consensus 294 l~~----~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~dg~~l 367 (595)
+.. .......+.|+|||+.++... ...+...+|.++..+ ++.+.+..... ...+.. .....+.|+|||++|
T Consensus 178 ~~~~~~~~g~~p~~~~~spdg~~l~v~~-~~~~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 178 QSVLTMEAGFGPRHLVFSPDGQYAFLAG-ELSSQIASLKYDTQT--GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEEETTT--TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred eeeEEcCCCCCCceEEECCCCCEEEEEe-CCCCEEEEEEecCCC--CceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 221 111334579999998655532 222333455555434 23232211000 000000 000127899999998
Q ss_pred EEEeeecCCcccEEEEecCCCCCCCCcceeEeeecC-CCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEe
Q 007620 368 IAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE 446 (595)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~ 446 (595)
|+..... ....+| ++. +|+.+.+...... ...+. ...|++|+++|++...
T Consensus 255 ~v~~~~~--~~v~v~------------------~~~~~g~~~~~~~~~~~--~~~~~-------~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 255 YVSNRGY--NTLAVF------------------AVTADGHLTLIQQISTE--GDFPR-------DFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEETT--TEEEEE------------------EECGGGCEEEEEEEECS--SSCCC-------EEEECTTSSEEEEEET
T ss_pred EEEeCCC--CEEEEE------------------EECCCCcEEEeEEEecC--CCCcC-------eEEECCCCCEEEEEEc
Confidence 8765421 122232 332 2332322111100 00111 2468999998876654
Q ss_pred cCCCcceEEEEeCCCCceeeEecC
Q 007620 447 SKTEITQYHILSWPLKKSSQITNF 470 (595)
Q Consensus 447 s~~~p~~l~~~d~~~~~~~~Lt~~ 470 (595)
. ..--.+|.++..+++++++...
T Consensus 306 ~-~~~v~v~~~d~~tg~l~~~~~~ 328 (347)
T 3hfq_A 306 N-TDNATLYARDLTSGKLSLLQKD 328 (347)
T ss_dssp T-TTEEEEEEECTTTCCEEEEEEE
T ss_pred C-CCcEEEEEEeCCCCeEEecccc
Confidence 3 3334456668777888777643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-09 Score=102.49 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=146.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|.|+|+...........+........+....|+|||+.|+.... ...|.++++.+++...+......
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~-- 140 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----------ASTLSIWDLAAPTPRIKAELTSS-- 140 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----------SSEEEEEECCCC--EEEEEEECS--
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----------CCcEEEEECCCCCcceeeecccC--
Confidence 477888873111112223321123346888999999998887653 25688889888763222111110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
...+..+.|+|+++.|+.... ...|.++++
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~-------------------------------------------------dg~v~~~d~~ 171 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCS-------------------------------------------------DGNIAVWDLH 171 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEET-------------------------------------------------TSCEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEeC-------------------------------------------------CCcEEEEeCC
Confidence 114568999999998877521 123555566
Q ss_pred CCC-eeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 165 DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 165 ~g~-~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
+++ ...+.. ......+.|+|||+.|+..... ..+.+||+.+++.......+ .
T Consensus 172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~-------------~ 225 (337)
T 1gxr_A 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------S 225 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------S
T ss_pred CCceeeeeecccCceEEEEECCCCCEEEEEecC-------------CcEEEEECCCCceEeeecCC-------------C
Confidence 343 223332 3345689999999998877532 37899998876554332211 1
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+|+++. ++.. . ....+++++. ..++...+......+..+.|+||+..++... .++
T Consensus 226 ~v~~~~~s~~~~~-l~~~-~-----------~~~~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg 287 (337)
T 1gxr_A 226 QIFSLGYCPTGEW-LAVG-M-----------ESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTG--KDN 287 (337)
T ss_dssp CEEEEEECTTSSE-EEEE-E-----------TTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEE--TTS
T ss_pred ceEEEEECCCCCE-EEEE-c-----------CCCcEEEEEC---CCCCeEEEcCCccceeEEEECCCCCEEEEec--CCC
Confidence 1235789999873 3322 1 1235666775 4344444545556678899999999877654 223
Q ss_pred ceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 323 QTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.|.++|+.++ +...... ..+.. +.|+++|+.++...
T Consensus 288 --~i~~~~~~~~--~~~~~~~~~~~v~~---------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 288 --LLNAWRTPYG--ASIFQSKESSSVLS---------CDISVDDKYIVTGS 325 (337)
T ss_dssp --EEEEEETTTC--CEEEEEECSSCEEE---------EEECTTSCEEEEEE
T ss_pred --cEEEEECCCC--eEEEEecCCCcEEE---------EEECCCCCEEEEec
Confidence 6777888773 3222221 22222 78999999876654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-08 Score=98.66 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=134.2
Q ss_pred CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEEec
Q 007620 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.....+....|||||+.|+... ...|.++++.+++.. .+...........+..+.|+||++.|+....
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred cCCCceEEEEEecCCcEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence 3444688999999999988764 245667788765421 1211000001124678999999998877521
Q ss_pred CCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe---eecC-CCCeeeeeE
Q 007620 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFG-TPAVYTAVE 181 (595)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~---~~lt-~~~~~~~~~ 181 (595)
...|.++++ +++. ..+. .......++
T Consensus 118 -------------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 118 -------------------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp -------------------------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred -------------------------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 123444555 2331 1222 223456889
Q ss_pred ECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCccccccccCCCCceeecCCCeeEEEE
Q 007620 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 182 ~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
|+|+++.|+..... ..+.+||+.+++.. .+.... .....+.|+|+++. |+..
T Consensus 149 ~~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~-l~~~ 201 (337)
T 1gxr_A 149 ISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGHT-------------DGASCIDISNDGTK-LWTG 201 (337)
T ss_dssp ECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSE-EEEE
T ss_pred ECCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeeeccc-------------CceEEEEECCCCCE-EEEE
Confidence 99999998877542 36889998866543 332211 11345889999873 3322
Q ss_pred EeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 261 ~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
.....+.++|. ..++..........+..+.|+|++..++... ..+ .|.++|+.++ +...
T Consensus 202 ------------~~dg~i~~~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~--~i~~~~~~~~--~~~~ 260 (337)
T 1gxr_A 202 ------------GLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGM--ESS--NVEVLHVNKP--DKYQ 260 (337)
T ss_dssp ------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTSS--CEEE
T ss_pred ------------ecCCcEEEEEC---CCCceEeeecCCCceEEEEECCCCCEEEEEc--CCC--cEEEEECCCC--CeEE
Confidence 12346777786 3334433334455677899999999877654 123 5777888773 3333
Q ss_pred Eee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 341 LFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 341 l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+.. ..+.. +.|+++|+.++...
T Consensus 261 ~~~~~~~v~~---------~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 261 LHLHESCVLS---------LKFAYCGKWFVSTG 284 (337)
T ss_dssp ECCCSSCEEE---------EEECTTSSEEEEEE
T ss_pred EcCCccceeE---------EEECCCCCEEEEec
Confidence 322 22222 78999999876654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-08 Score=110.44 Aligned_cols=219 Identities=14% Similarity=0.197 Sum_probs=134.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|+|||+.|+.... + ..|.++++.+.....+..... .+..+.|+|||+.|+....+
T Consensus 305 ~v~~~~~~~~~~~l~t~~~--------d--~~i~~w~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~d---- 365 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASD--------D--KTVKLWNRNGQHLQTLTGHSS-----SVWGVAFSPDGQTIASASDD---- 365 (577)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred CeEEEEECCCCCEEEEEeC--------C--CeEEEEeCCCCeeEEEeCCCC-----CEEEEEECCCCCEEEEEeCC----
Confidence 4778899999999877653 2 345555887776666654333 46688999999988775211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecC-CCCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFG-TPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt-~~~~~~~~~~SpDg~~l 189 (595)
..+.+++.+++ ...+. ....+..++|||||++|
T Consensus 366 ---------------------------------------------g~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 366 ---------------------------------------------KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp ---------------------------------------------SEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred ---------------------------------------------CEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 12233344442 22232 22345678999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
+....+ ..+.+||..+...+.+.... .....+.|+||++. |+..
T Consensus 401 ~~~~~d-------------~~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~d~~~-l~~~--------- 444 (577)
T 2ymu_A 401 ASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVWGVAFSPDDQT-IASA--------- 444 (577)
T ss_dssp EEEETT-------------SEEEEECTTCCEEEEEECCS-------------SCEEEEEECTTSSE-EEEE---------
T ss_pred EEEeCC-------------CEEEEEeCCCCEEEEecCCC-------------CCeEEEEECCCCCE-EEEE---------
Confidence 877542 36888998777666654321 11235789999873 3322
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccc
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFE 347 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~ 347 (595)
.....+.+++. ++.....+......+..+.|+||+..|+... .++ .|.++|.++ ...+.+.. ..+.
T Consensus 445 ---~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~--~d~--~i~iw~~~~--~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 445 ---SDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDK--TVKLWNRNG--QLLQTLTGHSSSVR 512 (577)
T ss_dssp ---ETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEE--TTS--EEEEEETTS--CEEEEEECCSSCEE
T ss_pred ---cCCCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCC--EEEEEcCCC--CEEEEEeCCCCCEE
Confidence 11235666775 4433444544555677899999999877654 223 466667655 22333322 2233
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEe
Q 007620 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. +.|+|||++|+...
T Consensus 513 ~---------l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 513 G---------VAFSPDGQTIASAS 527 (577)
T ss_dssp E---------EEECTTSSCEEEEE
T ss_pred E---------EEEcCCCCEEEEEE
Confidence 3 78999999876554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-08 Score=101.01 Aligned_cols=303 Identities=8% Similarity=0.031 Sum_probs=162.5
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
..+...+|||||+.||.... ...|.++++.+++......... ..+..+.|+||++.|+....
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~---- 94 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSK----------DSSASVWYSLNGERLGTLDGHT----GTIWSIDVDCFTKYCVTGSA---- 94 (369)
T ss_dssp SCEEEEEECTTSCEEEEEES----------SSCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSEEEEEET----
T ss_pred ceEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCchhhhhhhhcC----CcEEEEEEcCCCCEEEEEeC----
Confidence 35889999999998877643 2457777988887544433221 15678999999998877521
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecCCCCeeeeeEECCCCCe
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt~~~~~~~~~~SpDg~~ 188 (595)
...|.++++ +++. ..+........+.|+|+|+.
T Consensus 95 ---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 129 (369)
T 3zwl_B 95 ---------------------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY 129 (369)
T ss_dssp ---------------------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSE
T ss_pred ---------------------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCE
Confidence 123555666 4433 23333445668999999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE----EEeccCCCCccCCcccccccc--CCCCceeecCCCeeEEEEEe
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV----RELCDLPPAEDIPVCYNSVRE--GMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~l~~~~~~~~~~~~~~~~~~--~~~~~~wspdg~~~l~~~~~ 262 (595)
|++...... .....+.+||+..+.. ......+.. .+..... ....+.|+|+++. |+..
T Consensus 130 l~~~~~~~~--------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~~~-- 193 (369)
T 3zwl_B 130 FLAILDNVM--------KNPGSINIYEIERDSATHELTKVSEEPIH-----KIITHEGLDAATVAGWSTKGKY-IIAG-- 193 (369)
T ss_dssp EEEEECCBT--------TBCCEEEEEEEEECTTTCCEEEECSSCSE-----EEECCTTCCCEEEEEECGGGCE-EEEE--
T ss_pred EEEecCCcc--------CCCCEEEEEEecCCccceeecccccceee-----eccCCcCccceeEEEEcCCCCE-EEEE--
Confidence 988864311 0124677787653211 111100000 0000000 1235788998873 3322
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
.....+.++|+ .++++.. .+......+..+.|+||+..|+.... ++ .|.++|+.++ +....
T Consensus 194 ----------~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~--~i~v~d~~~~--~~~~~ 255 (369)
T 3zwl_B 194 ----------HKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR--DT--NSFLVDVSTL--QVLKK 255 (369)
T ss_dssp ----------ETTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET--TS--EEEEEETTTC--CEEEE
T ss_pred ----------cCCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecC--Cc--eEEEEECCCC--ceeee
Confidence 12245777776 1212222 23334556778999999998776542 23 6888898873 33322
Q ss_pred ee--cccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccc
Q 007620 342 FD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (595)
Q Consensus 342 ~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (595)
+. ..+.. +.|+++|+.+++...+. ...++... .......+..+|+.+++.........
T Consensus 256 ~~~~~~~~~---------~~~~~~~~~l~~~~~~~---~~~~~~~~----~~~~~~~i~~~d~~~~~~~~~~~~~~---- 315 (369)
T 3zwl_B 256 YETDCPLNT---------AVITPLKEFIILGGGQE---AKDVTTTS----ANEGKFEARFYHKIFEEEIGRVQGHF---- 315 (369)
T ss_dssp EECSSCEEE---------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECCS----
T ss_pred ecCCCCcee---------EEecCCCceEEEeecCC---CceEEEEe----cCCCcceeEEEecCCCcchhheeccc----
Confidence 22 12222 78999999888776431 22232211 01111224445666665444332211
Q ss_pred eeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCC
Q 007620 420 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (595)
Q Consensus 420 ~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~ 461 (595)
..+. ...|+++++.|+....+ ..+.+.++..
T Consensus 316 ~~v~-------~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 316 GPLN-------TVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp SCEE-------EEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred CcEE-------EEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 1122 14578888866544322 4577777654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-08 Score=106.92 Aligned_cols=219 Identities=14% Similarity=0.191 Sum_probs=132.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|+|||+.|+.... + ..|.+++..+...+.+..... .+..+.|+||++.|+....+
T Consensus 264 ~v~~v~~~~d~~~l~~~~~--------d--~~i~~w~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d---- 324 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASD--------D--KTVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDD---- 324 (577)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEEEEeC--------C--CEEEEEeCCCcEEEEEecCCC-----CeEEEEECCCCCEEEEEeCC----
Confidence 5778899999998876553 2 345666776544455543332 46688999999988765211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCC-CCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-PAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~-~~~~~~~~~SpDg~~l 189 (595)
..|.++++++ ....+.. ......++|+|||++|
T Consensus 325 ---------------------------------------------~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 325 ---------------------------------------------KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp ---------------------------------------------SCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------CeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEE
Confidence 1122334433 2333332 2345678999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
+..... ..+.+||..+.....+.... .....+.|+|||+. |+..
T Consensus 360 ~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~-l~~~--------- 403 (577)
T 2ymu_A 360 ASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVRGVAFSPDGQT-IASA--------- 403 (577)
T ss_dssp EEEETT-------------SEEEEEETTCCEEEEEECCS-------------SCEEEEEECTTSSC-EEEE---------
T ss_pred EEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CCeEEEEECCCCCE-EEEE---------
Confidence 877532 36778888777666654321 11345789999984 3322
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccc
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFE 347 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~ 347 (595)
.....+.+++. ++...+.+......+..+.|+||+..++... .++ .|.++|+.+ ...+.+.. ..+.
T Consensus 404 ---~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~d~--~v~~w~~~~--~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 404 ---SDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS--DDK--TVKLWNRNG--QLLQTLTGHSSSVR 471 (577)
T ss_dssp ---ETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTS--EEEEEETTS--CEEEEEECCSSCEE
T ss_pred ---eCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEc--CCC--EEEEEECCC--CEEEEEcCCCCCEE
Confidence 11235666775 4323334444455677889999999877654 223 566667765 22233322 2222
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEe
Q 007620 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. +.|+|||+.|+...
T Consensus 472 ~---------~~~spd~~~las~~ 486 (577)
T 2ymu_A 472 G---------VAFSPDGQTIASAS 486 (577)
T ss_dssp E---------EEECTTSCEEEEEE
T ss_pred E---------EEEcCCCCEEEEEe
Confidence 2 78999999877654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-08 Score=106.20 Aligned_cols=256 Identities=9% Similarity=0.010 Sum_probs=152.0
Q ss_pred eeEEEecCCCCCCCCceeeecC----CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGY----PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~----~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
.|++.|+. +|+..+.... .....+....|+|+|+.++ +.. ....|+++++++++........
T Consensus 145 ~i~~~d~~----~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~---------~d~~v~~~d~~~~~~~~~~~~~ 210 (433)
T 3bws_A 145 GMDVLDIN----SGQTVRLSPPEKYKKKLGFVETISIPEHNELWV-SQM---------QANAVHVFDLKTLAYKATVDLT 210 (433)
T ss_dssp SEEEEETT----TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEE-EEG---------GGTEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECC----CCeEeeecCcccccccCCceeEEEEcCCCEEEE-EEC---------CCCEEEEEECCCceEEEEEcCC
Confidence 38888987 6766654311 1112466789999997543 332 2367888899887754433221
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ..+..+.|+||++.|++.... ...|++
T Consensus 211 ~----~~~~~~~~~~~~~~l~~~~~~------------------------------------------------~~~i~~ 238 (433)
T 3bws_A 211 G----KWSKILLYDPIRDLVYCSNWI------------------------------------------------SEDISV 238 (433)
T ss_dssp S----SSEEEEEEETTTTEEEEEETT------------------------------------------------TTEEEE
T ss_pred C----CCeeEEEEcCCCCEEEEEecC------------------------------------------------CCcEEE
Confidence 1 145689999999988775210 134666
Q ss_pred EcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 162 GSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 162 ~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
+|+ +++.. .+........++|+|||+.|++......... .....|++||+.+++.......+
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-----~~dg~i~~~d~~~~~~~~~~~~~----------- 302 (433)
T 3bws_A 239 IDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE-----SGGGRLGIYSMDKEKLIDTIGPP----------- 302 (433)
T ss_dssp EETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC-----SCCEEEEEEETTTTEEEEEEEEE-----------
T ss_pred EECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc-----cCCCeEEEEECCCCcEEeeccCC-----------
Confidence 777 45433 3333344568999999999988864321000 01347999999876554432111
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEee
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....+.|+|+++. ++... .....+.+++. .+++.............+.|+|||..++.....
T Consensus 303 --~~~~~~~~~~~g~~-l~~~~-----------~~~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 303 --GNKRHIVSGNTENK-IYVSD-----------MCCSKIEVYDL---KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp --ECEEEEEECSSTTE-EEEEE-----------TTTTEEEEEET---TTTEEEEEEECSSSEEEEEECTTSSEEEEEECC
T ss_pred --CCcceEEECCCCCE-EEEEe-----------cCCCEEEEEEC---CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecC
Confidence 11245789999874 43331 12346777786 434444333344456789999999876654321
Q ss_pred ccc-----------ceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 320 KTS-----------QTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 320 ~~~-----------~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
... ...|+++|+.++ +....+.. .+.. +.|++||+.|++..
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~~~~~~~~---------~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWEAGNQPTG---------LDVSPDNRYLVISD 419 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEECSSSEEE---------EEECTTSCEEEEEE
T ss_pred CCccccccccccccceEEEEEECCCC--cEEEEecCCCCCce---------EEEcCCCCEEEEEE
Confidence 110 127999999873 33323221 1222 78999999887664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-08 Score=100.64 Aligned_cols=276 Identities=11% Similarity=0.041 Sum_probs=150.4
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
...|+++|+.+++........... .....+.|+|||+.|++....
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~--------------------------------- 54 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVNK--------------------------------- 54 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEETT---------------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeCC---------------------------------
Confidence 468999999988765543322200 014578999999988775210
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCee-ecCCCC------eeeeeEECCCCCeEEEEEcccCccccccCcc--ccee
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCAR--FSQK 210 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~------~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~--~~~~ 210 (595)
...|+++|+ +++.. .+.... ....++|||||++|++....... .+... ....
T Consensus 55 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~ 116 (337)
T 1pby_B 55 ---------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL---ELTHFEVQPTR 116 (337)
T ss_dssp ---------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE---CSSCEEECCCE
T ss_pred ---------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccc---ccccccccCce
Confidence 135667777 45433 333221 23478999999999888522100 00000 1257
Q ss_pred EEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC
Q 007620 211 VQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK 290 (595)
Q Consensus 211 l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~ 290 (595)
|++||+.+++........ .....+.|+|||+. |+.. ...++++|+ .+++
T Consensus 117 i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~--------------~~~i~~~d~---~~~~ 165 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAP-------------RQITMLAWARDGSK-LYGL--------------GRDLHVMDP---EAGT 165 (337)
T ss_dssp EEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSC-EEEE--------------SSSEEEEET---TTTE
T ss_pred EEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCE-EEEe--------------CCeEEEEEC---CCCc
Confidence 999999876654322111 11346789999984 4433 124667775 3334
Q ss_pred ceeccccCccccceeecCCCcEEEEEEeec--------------------ccceEEEEEeCCCCCCCcEEEeeccccccc
Q 007620 291 PEILHKLDLRFRSVSWCDDSLALVNETWYK--------------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY 350 (595)
Q Consensus 291 ~~~l~~~~~~~~~~~wspDg~~l~~~~~~~--------------------~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~ 350 (595)
...............|+|||..++...... .....|+++|+.++ +...+.-......
T Consensus 166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~- 242 (337)
T 1pby_B 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG--EMAMREVRIMDVF- 242 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--CEEEEEEEECSSC-
T ss_pred EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC--CceEeecCCCCCc-
Confidence 333222222123457899987543221000 01126889999884 3332211000000
Q ss_pred CCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCC
Q 007620 351 SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQG 430 (595)
Q Consensus 351 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (595)
...+.|++||+.+++.. + .++ .+|+++++......... .+.
T Consensus 243 ----~~~~~~s~dg~~l~~~~------~-~v~----------------~~d~~~~~~~~~~~~~~-----~~~------- 283 (337)
T 1pby_B 243 ----YFSTAVNPAKTRAFGAY------N-VLE----------------SFDLEKNASIKRVPLPH-----SYY------- 283 (337)
T ss_dssp ----EEEEEECTTSSEEEEEE------S-EEE----------------EEETTTTEEEEEEECSS-----CCC-------
T ss_pred ----eeeEEECCCCCEEEEeC------C-eEE----------------EEECCCCcCcceecCCC-----cee-------
Confidence 00178999999888762 1 232 45776766544332211 111
Q ss_pred cccccccCCEEEEEEecCCCcceEEEEeCCCCceee
Q 007620 431 EEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (595)
Q Consensus 431 ~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~ 466 (595)
...|++|++++++.. ....++++|+.+++...
T Consensus 284 ~~~~s~dg~~l~~~~----~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 284 SVNVSTDGSTVWLGG----ALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEECTTSCEEEEES----BSSEEEEEETTTCCEEE
T ss_pred eEEECCCCCEEEEEc----CCCcEEEEECcCCcEEE
Confidence 135788998777642 24679999988776543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-08 Score=101.99 Aligned_cols=231 Identities=14% Similarity=0.198 Sum_probs=121.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...+|||||++||-.+..... --...|++++..+++...............+..+.|+||++.|+-. .+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~----~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s-~d---- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSR----TWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS-DS---- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSS----SCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-TT----
T ss_pred CEEEEEECCCCCEEEEEcCCCCc----cccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-CC----
Confidence 47789999999988765531000 0135688888877654322111101111246789999999865432 11
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee------ecCCCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK------DFGTPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~------~lt~~~~~~~~~~Sp 184 (595)
| .|.++|+ +++.. .......+..++|||
T Consensus 115 ------------------g---------------------------~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 115 ------------------G---------------------------AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp ------------------S---------------------------CEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred ------------------C---------------------------EEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 1 1222233 22111 011223456889999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
||++|+..... ..|.+||+.+++... +.... .....+.|++++...++..
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~~h~-------------~~v~~v~~s~~~~~~~~s~--- 200 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYNAHS-------------SEVNCVAACPGKDTIFLSC--- 200 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTCSSCEEEE---
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCCC-------------CCEEEEEEccCCCceeeee---
Confidence 99998876542 368899988765433 32111 1123577888876433322
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCcee-cc--ccCccccceeecCCCc-EEEEEEeecccceEEEEEeCCCCCCCcE
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH--KLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~--~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~L~~~d~~~~~~~~~ 339 (595)
.....+.++|+ ..++... +. ........+.|+|++. .|+... .++ .|.++|+.+++ ..+
T Consensus 201 ---------~~dg~v~~wd~---~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~--~i~~wd~~~~~-~~~ 263 (357)
T 4g56_B 201 ---------GEDGRILLWDT---RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETG--NVSLVNIKNPD-SAQ 263 (357)
T ss_dssp ---------ETTSCEEECCT---TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSS--CEEEEESSCGG-GCE
T ss_pred ---------ccCCceEEEEC---CCCceeeeeeeccccccccchhhhhcccceEEEee--ccc--ceeEEECCCCc-EeE
Confidence 11235677776 3233322 21 2233466789999864 455443 223 56677887742 223
Q ss_pred EEe--ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 340 VLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 340 ~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+. ...+.. +.|+|+|+.+++..
T Consensus 264 ~~~~~~~~v~~---------l~~sp~~~~~lasg 288 (357)
T 4g56_B 264 TSAVHSQNITG---------LAYSYHSSPFLASI 288 (357)
T ss_dssp EECCCSSCEEE---------EEECSSSSCCEEEE
T ss_pred EEeccceeEEE---------EEEcCCCCCEEEEE
Confidence 332 122332 78999986544443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-09 Score=115.69 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=148.6
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccc---cCCCceEEEEEECCCCc--eEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDN---VSSCKLRVWIADAETGE--AKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~---~~~~~~~L~v~d~~~g~--~~~lt~ 79 (595)
..|+++||. +|+..+.+ +. ......+.|| ||+.|+|++....+.+ ......+||+.++.++. .+.|+.
T Consensus 155 ~~i~v~dl~----tg~~~~~~-~~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~ 227 (693)
T 3iuj_A 155 REIHLMDVE----SKQPLETP-LK-DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG 227 (693)
T ss_dssp EEEEEEETT----TCSEEEEE-EE-EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES
T ss_pred EEEEEEECC----CCCCCccc-cC-CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe
Confidence 579999998 88876664 22 2135789999 9999999986521000 00234679999997754 356654
Q ss_pred CCC-ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecce
Q 007620 80 SPD-ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (595)
Q Consensus 80 ~~~-~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (595)
... .. ..+..+.|||||+.|++..... + ..++
T Consensus 228 ~~~~~~--~~~~~~~~SpDg~~l~~~~~~~---------------------~------------------------~~~~ 260 (693)
T 3iuj_A 228 AIPAQH--HRYVGATVTEDDRFLLISAANS---------------------T------------------------SGNR 260 (693)
T ss_dssp CSGGGC--CSEEEEEECTTSCEEEEEEESS---------------------S------------------------SCCE
T ss_pred cCCCCC--eEEEEEEEcCCCCEEEEEEccC---------------------C------------------------CCcE
Confidence 332 10 0234788999999998863210 0 1257
Q ss_pred EEEEcC-CC--CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE---EEeccCCCCcc
Q 007620 159 LVLGSL-DG--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPAED 232 (595)
Q Consensus 159 l~~~d~-~g--~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---~~l~~~~~~~~ 232 (595)
||++++ ++ +.+.|+.........|+++|++|+|.++... ....|+++|++++.. +.+....
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~---------~~~~l~~~d~~~~~~~~~~~l~~~~---- 327 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDA---------PNRRLVTVDAANPGPAHWRDLIPER---- 327 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTC---------TTCEEEEEETTSCCGGGCEEEECCC----
T ss_pred EEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCC---------CCCEEEEEeCCCCCccccEEEecCC----
Confidence 899998 44 5677765432222238899999999876421 135899999987654 4443221
Q ss_pred CCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc-cCccccceeecCCCc
Q 007620 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSL 311 (595)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~-~~~~~~~~~wspDg~ 311 (595)
... +.|+++++. |++.. .+. ....++++++ +|+..+.+.- ..+.+..+.+++|+.
T Consensus 328 ---------~~~--~~~s~~g~~-lv~~~-~~~--------g~~~l~~~d~---~g~~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 328 ---------QQV--LTVHSGSGY-LFAEY-MVD--------ATARVEQFDY---EGKRVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp ---------SSC--EEEEEETTE-EEEEE-EET--------TEEEEEEECT---TSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred ---------CCE--EEEEEECCE-EEEEE-EEC--------CeeEEEEEEC---CCCeeEEeecCCCceEEeeecCCCCC
Confidence 111 278899875 54432 111 1236777786 5555555432 233455677888887
Q ss_pred EEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 312 ~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.+++..........||.+|+.+ ++.+.|.
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~--g~~~~l~ 412 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKS--GAISLYR 412 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTT--CCEEEEE
T ss_pred EEEEEecCCCCCCEEEEEECCC--CeEEEEE
Confidence 6555432223345899999987 3455553
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-09 Score=115.99 Aligned_cols=270 Identities=7% Similarity=0.004 Sum_probs=147.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEEC---CCC--ceEecccCCCcccc---ccccceEEe-cCCcEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETG--EAKPLFESPDICLN---AVFGSFVWV-NNSTLLI 102 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g--~~~~lt~~~~~~~~---~~~~~~~Ws-pdg~~l~ 102 (595)
..+.|. |+|.+++|++.... .....+++.+. .++ +.+.+.+......+ ...+.+.|| |||++|+
T Consensus 118 ~~~~p~--~~g~~~yy~~~~~g-----~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lA 190 (751)
T 2xe4_A 118 DMSAPY--VYGKYRYYTREVKG-----KPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVA 190 (751)
T ss_dssp EECCCE--EETTEEEEEEECTT-----CCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEE
T ss_pred cCCCCe--EECCEEEEEEECCC-----CceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEE
Confidence 455665 79999999876421 22356888886 444 44444322100000 024578999 9999999
Q ss_pred EEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC-CeeecCCC--Ceee
Q 007620 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYT 178 (595)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g-~~~~lt~~--~~~~ 178 (595)
|.... .|. ...+||++|+ +| + .+... ....
T Consensus 191 y~~~~---------------------~G~-----------------------~~~~l~v~dl~~g~~--~l~~~~~~~~~ 224 (751)
T 2xe4_A 191 FSVDM---------------------SGN-----------------------EVYTIEFKRISDPSQ--TIADKVSGTNG 224 (751)
T ss_dssp EEEES---------------------SSS-----------------------SCEEEEEEETTCTTC--CCCCCEEEECS
T ss_pred EEEeC---------------------CCC-----------------------ceEEEEEEECCCCCE--eCCccccCcee
Confidence 97431 111 1246999999 55 4 22211 1234
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (595)
.++|||||+.|+|++.... ..+.+|+++++.++... ..+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~--------~~~~~v~~~~lgt~~~~--------------------------------~~lv 264 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDET--------LRENKVWRHVMGKLQSE--------------------------------DVCL 264 (751)
T ss_dssp CCEECSSTTEEEEEEECTT--------CCEEEEEEEETTSCGGG--------------------------------CEEE
T ss_pred eEEEecCCCEEEEEEECCC--------CCCCEEEEEECCCCchh--------------------------------cEEE
Confidence 7899999999999975321 01234555544332100 0010
Q ss_pred EEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
+- . . .......+.|||||+.|++.... .....||++|++++..+.
T Consensus 265 ~~---------------------~----~---------~~~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 265 YE---------------------E----H---------NPLFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp EE---------------------C----C---------CTTCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCC
T ss_pred Ee---------------------c----C---------CCceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCc
Confidence 10 0 0 00112457899999987776543 245689999998743244
Q ss_pred --EEEeecccccccCCCCCCCeeeCCC---CCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCC-Cceee-ee
Q 007620 339 --RVLFDRVFENVYSDPGSPMMTRTST---GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-GSKER-IW 411 (595)
Q Consensus 339 --~~l~~~~~~~~~~~~~~~~~~~~~d---g~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~-g~~~~-l~ 411 (595)
+.|+.... . ..|+++ |+.+++.....+..... |+.+++.+ ++.+. |+
T Consensus 310 ~~~~l~~~~~-~---------~~~s~~~~~g~~l~~~t~~~~a~~~~----------------L~~~d~~~~~~~~~~li 363 (751)
T 2xe4_A 310 TLEIVRPREK-G---------VRYDVQMHGTSHLVILTNEGGAVNHK----------------LLIAPRGQPSDWSHVLV 363 (751)
T ss_dssp CEEESSCCCT-T---------CCEEEEEETTTEEEEEECTTTCTTCE----------------EEEEETTSTTCCCCEEE
T ss_pred eeEEeecCCC-C---------ceEEEeeeeCCEEEEEeCCCCCCCcE----------------EEEEcCCCcccceeeEE
Confidence 55543321 1 334444 78887776432011223 34567654 34444 44
Q ss_pred ecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeC-------CCCc-eeeEe
Q 007620 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW-------PLKK-SSQIT 468 (595)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~-------~~~~-~~~Lt 468 (595)
..... ..+ ..++++++.+++.... .....|+++++ .+++ .++|+
T Consensus 364 ~~~~~---~~l---------~~~~~~~~~lv~~~~~-~g~~~l~~~dl~~~~~~~~~g~~~~~l~ 415 (751)
T 2xe4_A 364 DHSED---VFM---------ESIAVRSNYLVVAGRR-AGLTRIWTMMADSQDGVFKAGTGLREVV 415 (751)
T ss_dssp CCCSS---EEE---------EEEEECSSEEEEEEEE-TTEEEEEEEECCTTTSCCCTTTCCEECC
T ss_pred CCCCC---cEE---------EEEEEECCEEEEEEEe-CCEEEEEEEecccccccccCCccceEEC
Confidence 32211 011 1244566788777654 44567999996 4556 66664
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-08 Score=96.85 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=131.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|+|++..+|-.+. ...|.++|+.+++......... ..+..+.|+|||+.|+....
T Consensus 82 ~v~~~~~~~~~~~l~s~s~----------D~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~g~~----- 142 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSL----------DAHIRLWDLENGKQIKSIDAGP----VDAWTLAFSPDSQYLATGTH----- 142 (321)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCT----TCCCCEEECTTSSEEEEECT-----
T ss_pred CEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCEEEEEeCCC----ccEEEEEECCCCCEEEEEcC-----
Confidence 4778899999987765442 2567777998886543322211 13557999999998877521
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC-CCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~ 188 (595)
...+.++++ +++. ..+. .......++|||||++
T Consensus 143 --------------------------------------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 143 --------------------------------------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp --------------------------------------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred --------------------------------------------CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 123344455 3322 2222 2234568999999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
|+....+ ..+.+||+.+++. ..+.... .....+.|+||++. |+..
T Consensus 179 lasg~~d-------------g~i~iwd~~~~~~~~~~~~h~-------------~~v~~l~~spd~~~-l~s~------- 224 (321)
T 3ow8_A 179 LASGAID-------------GIINIFDIATGKLLHTLEGHA-------------MPIRSLTFSPDSQL-LVTA------- 224 (321)
T ss_dssp EEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCCCEEEECTTSCE-EEEE-------
T ss_pred EEEEcCC-------------CeEEEEECCCCcEEEEEcccC-------------CceeEEEEcCCCCE-EEEE-------
Confidence 9877642 3688999886654 3332211 11356899999873 3221
Q ss_pred cccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec--
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-- 344 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~-- 344 (595)
.....+.++|. ..++. ..+......+..+.|+||+..|+... .++ .|.++|+.++. ....+..+
T Consensus 225 -----s~dg~i~iwd~---~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~D~--~v~iwd~~~~~-~~~~~~~h~~ 291 (321)
T 3ow8_A 225 -----SDDGYIKIYDV---QHANLAGTLSGHASWVLNVAFCPDDTHFVSSS--SDK--SVKVWDVGTRT-CVHTFFDHQD 291 (321)
T ss_dssp -----CTTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTTTE-EEEEECCCSS
T ss_pred -----cCCCeEEEEEC---CCcceeEEEcCCCCceEEEEECCCCCEEEEEe--CCC--cEEEEeCCCCE-EEEEEcCCCC
Confidence 12235677775 32232 23434445577899999999877654 233 46666777631 11222221
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 345 VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+.. +.|+++|+.|+...
T Consensus 292 ~v~~---------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 292 QVWG---------VKYNGNGSKIVSVG 309 (321)
T ss_dssp CEEE---------EEECTTSSEEEEEE
T ss_pred cEEE---------EEECCCCCEEEEEe
Confidence 2222 78999999876543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-07 Score=99.28 Aligned_cols=324 Identities=10% Similarity=0.004 Sum_probs=168.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEEC--CCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~--~~g~~~~lt~~~~~ 83 (595)
.|.+.|.. +++..... ..+.......|||||++|+... . . ..|.++|+ ++++...-.....
T Consensus 160 ~V~v~D~~----t~~~~~~i--~~g~~~~~v~~spdg~~l~v~~-~--------d-~~V~v~D~~~~t~~~~~~i~~g~- 222 (543)
T 1nir_A 160 QIALVDGD----SKKIVKVI--DTGYAVHISRMSASGRYLLVIG-R--------D-ARIDMIDLWAKEPTKVAEIKIGI- 222 (543)
T ss_dssp EEEEEETT----TCCEEEEE--ECSTTEEEEEECTTSCEEEEEE-T--------T-SEEEEEETTSSSCEEEEEEECCS-
T ss_pred eEEEEECC----CceEEEEE--ecCcccceEEECCCCCEEEEEC-C--------C-CeEEEEECcCCCCcEEEEEecCC-
Confidence 36777776 66554332 2222366788999999876554 2 2 67899999 6665432222111
Q ss_pred cccccccceEEec----CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 84 CLNAVFGSFVWVN----NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 84 ~~~~~~~~~~Wsp----dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
....+.+|| ||++|+..... ...+
T Consensus 223 ----~p~~va~sp~~~~dg~~l~v~~~~------------------------------------------------~~~v 250 (543)
T 1nir_A 223 ----EARSVESSKFKGYEDRYTIAGAYW------------------------------------------------PPQF 250 (543)
T ss_dssp ----EEEEEEECCSTTCTTTEEEEEEEE------------------------------------------------SSEE
T ss_pred ----CcceEEeCCCcCCCCCEEEEEEcc------------------------------------------------CCeE
Confidence 345789999 99998775210 1234
Q ss_pred EEEcC-CCCee-ecCC------------CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEec
Q 007620 160 VLGSL-DGTAK-DFGT------------PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (595)
Q Consensus 160 ~~~d~-~g~~~-~lt~------------~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~ 225 (595)
.++|. ++++. .+.. ......+.+|||++.++++... ...|+++|..+.+...+.
T Consensus 251 ~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 251 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEEE
T ss_pred EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCcceeE
Confidence 44444 33322 1211 1134578899999988777532 247899998754321111
Q ss_pred cCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC---cccc
Q 007620 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---LRFR 302 (595)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~---~~~~ 302 (595)
..+. ......+.|+|||+. ++.. . ...+.+.++|. ..++........ ....
T Consensus 319 ~i~~-----------~~~~~~~~~spdg~~-l~va-~----------~~~~~v~v~D~---~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 319 SIGA-----------APFLHDGGWDSSHRY-FMTA-A----------NNSNKVAVIDS---KDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEEC-----------CSSCCCEEECTTSCE-EEEE-E----------GGGTEEEEEET---TTTEEEEEEECSSSBCCTT
T ss_pred Eecc-----------CcCccCceECCCCCE-EEEE-e----------cCCCeEEEEEC---CCCeEEEeeccCCCCCCCC
Confidence 1110 012356889999984 3322 1 12346777786 334443322211 1112
Q ss_pred ceee-cCCCcE-EEEEEeecccceEEEEEeCCCCCC---CcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCC-
Q 007620 303 SVSW-CDDSLA-LVNETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND- 376 (595)
Q Consensus 303 ~~~w-spDg~~-l~~~~~~~~~~~~L~~~d~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~- 376 (595)
.+.| +|++.. ++... ..++ .|-++|.++... ..+++-...... .+...+.++|||+.||+...-..+
T Consensus 373 g~~~~~p~~g~~~~s~~-~~d~--~V~v~d~~~~~~~~~~~~~v~~l~~~g----~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 373 GANFVHPKYGPVWSTSH-LGDG--SISLIGTDPKNHPQYAWKKVAELQGQG----GGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp CEEEEETTTEEEEEEEB-SSSS--EEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CcccCCCCCccEEEecc-CCCc--eEEEEEeCCCCCchhcCeEEEEEEcCC----CCceEEEcCCCCCcEEEecCCCCCc
Confidence 2333 677544 44332 1122 566677765210 123221111100 122347889999998876411000
Q ss_pred -cccEEEEecCCCCCCCCcceeEeeecCCCcee-eeeecC----ccccceeeEEeeeCCCcccccccCCEEEEEEecC-C
Q 007620 377 -EQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESN----REKYFETAVALVFGQGEEDINLNQLKILTSKESK-T 449 (595)
Q Consensus 377 -~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~~----~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~-~ 449 (595)
.... +..+|+++++.. .++... .......+.. ..|++||+.++++..+. .
T Consensus 446 ~~~~~----------------v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 446 RISQS----------------VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ-------PEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp HHHTC----------------EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE-------EEECSSSSEEEEEEECCTT
T ss_pred ccCce----------------EEEEECCCCCCCeEEeechhhcccCCCCCceEe-------ccCCCCCCEEEEEeecCCC
Confidence 0111 224577776643 222100 0000112221 46899999998876432 4
Q ss_pred CcceEEEEeCCCCceee
Q 007620 450 EITQYHILSWPLKKSSQ 466 (595)
Q Consensus 450 ~p~~l~~~d~~~~~~~~ 466 (595)
....|.++|..++++++
T Consensus 503 ~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKA 519 (543)
T ss_dssp SCCEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCceEEE
Confidence 46789999988776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-08 Score=100.38 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=89.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|++.|+. +++..+...+........+.|||||+++++... ....|+++|+++++...........
T Consensus 21 ~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---------~~~~i~~~d~~t~~~~~~~~~~~~~ 87 (349)
T 1jmx_B 21 NNLHVVDVA----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------HYGDIYGIDLDTCKNTFHANLSSVP 87 (349)
T ss_dssp TEEEEEETT----TTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---------TTTEEEEEETTTTEEEEEEESCCST
T ss_pred CeEEEEECC----CCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---------CCCcEEEEeCCCCcEEEEEEccccc
Confidence 468889987 666554433333114678999999987766542 3468999999988765433322100
Q ss_pred --ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 85 --LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 85 --~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
....+..+.|+|||+.|++...... .. .+. +. .....|+++
T Consensus 88 ~~~~~~~~~~~~spdg~~l~~~~~~~~---------------------------~~-------~~~--~~-~~~~~i~~~ 130 (349)
T 1jmx_B 88 GEVGRSMYSFAISPDGKEVYATVNPTQ---------------------------RL-------NDH--YV-VKPPRLEVF 130 (349)
T ss_dssp TEEEECSSCEEECTTSSEEEEEEEEEE---------------------------EC-------SSC--EE-ECCCEEEEE
T ss_pred ccccccccceEECCCCCEEEEEccccc---------------------------cc-------ccc--cc-cCCCeEEEE
Confidence 0012457899999999888632100 00 000 00 013578888
Q ss_pred cC-CCCee----ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE
Q 007620 163 SL-DGTAK----DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (595)
Q Consensus 163 d~-~g~~~----~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 222 (595)
|+ +++.. .+..+.....++|||||+ |++.. .+++++|+.+++..
T Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~---------------~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 131 STADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG---------------PDIYKMDVKTGKYT 179 (349)
T ss_dssp EGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES---------------SSEEEECTTTCCEE
T ss_pred ECCCccccceeeeccCCCcccceeECCCCc-EEEcc---------------CcEEEEeCCCCcee
Confidence 88 44322 122223345678999999 66531 14889998866543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-07 Score=94.89 Aligned_cols=312 Identities=12% Similarity=0.025 Sum_probs=150.3
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
.+.+|+...... .++.-.+|.+|.++|+.+.++.. .. .....+.|+|||+.|++......
T Consensus 13 ~~~~~vg~y~~~---~~~~i~~~~~d~~~g~~~~~~~~-~~---~~p~~l~~spdg~~l~~~~~~~~------------- 72 (361)
T 3scy_A 13 ELTMLVGTYTSG---NSKGIYTFRFNEETGESLPLSDA-EV---ANPSYLIPSADGKFVYSVNEFSK------------- 72 (361)
T ss_dssp EEEEEEEECCSS---SCCEEEEEEEETTTCCEEEEEEE-EC---SCCCSEEECTTSSEEEEEECCSS-------------
T ss_pred ceEEEEEeccCC---CCCCEEEEEEeCCCCCEEEeecc-cC---CCCceEEECCCCCEEEEEEccCC-------------
Confidence 345566543211 02345677778888988777543 21 13467899999999888632100
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC-CCeeecCC----CCeeeeeEECCCCCeEEEEEcccC
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRP 197 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~lt~----~~~~~~~~~SpDg~~l~~~~~~~~ 197 (595)
+ . ..-.+|.++.. |+.+.+.. ......+++ ||++|+++....
T Consensus 73 -------~-----------------~------~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~- 119 (361)
T 3scy_A 73 -------D-----------------Q------AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSG- 119 (361)
T ss_dssp -------T-----------------T------CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTT-
T ss_pred -------C-----------------C------CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCC-
Confidence 0 0 01234555553 55554421 222334555 899888775322
Q ss_pred ccccccCcccceeEEEEcCC-CceEEEecc---CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccC
Q 007620 198 YSYKVPCARFSQKVQVWTTD-GKLVRELCD---LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVS 273 (595)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~ 273 (595)
..+.+|++. .+....+.. .......+. .........+.|+|||+. |+.. +.
T Consensus 120 -----------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~spdg~~-l~~~---~~-------- 174 (361)
T 3scy_A 120 -----------GSITVFPIGQDGALLPASDVIEFKGSGPDKE--RQTMPHLHCVRITPDGKY-LLAD---DL-------- 174 (361)
T ss_dssp -----------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTT--TCSSCCEEEEEECTTSSE-EEEE---ET--------
T ss_pred -----------CEEEEEEeCCCCcCcccceeEEccCCCCCcc--ccCCCcceEEEECCCCCE-EEEE---eC--------
Confidence 367788875 333222211 000000000 000001124789999984 4443 11
Q ss_pred CcceEEeccCCCCCCC----C-ce------ec-cccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 274 PRDIIYTQPAEPAEGE----K-PE------IL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 274 ~~~~~~~~d~~~~~g~----~-~~------~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
..+.+.+++++. .++ + .. .+ .........+.|+|||+.++.... ..+ .|.++++++ +..+.+
T Consensus 175 ~~~~v~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~--~v~v~~~~~--g~~~~~ 248 (361)
T 3scy_A 175 GTDQIHKFNINP-NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE-IGG--TVIAFRYAD--GMLDEI 248 (361)
T ss_dssp TTTEEEEEEECT-TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-TTC--EEEEEEEET--TEEEEE
T ss_pred CCCEEEEEEEcC-CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC-CCC--eEEEEEecC--CceEEe
Confidence 123444444301 222 1 11 11 112223456899999987655431 122 566677665 333333
Q ss_pred eecccc-cccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccce
Q 007620 342 FDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (595)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (595)
...... .... +...+.|+|||++||+..... +....+| .++..+++.+.+...... .
T Consensus 249 ~~~~~~~~~~~--~~~~i~~spdg~~l~v~~~~~-~~~i~v~----------------~~~~~~g~~~~~~~~~~g---~ 306 (361)
T 3scy_A 249 QTVAADTVNAQ--GSGDIHLSPDGKYLYASNRLK-ADGVAIF----------------KVDETNGTLTKVGYQLTG---I 306 (361)
T ss_dssp EEEESCSSCCC--CEEEEEECTTSSEEEEEECSS-SCEEEEE----------------EECTTTCCEEEEEEEECS---S
T ss_pred EEEecCCCCCC--CcccEEECCCCCEEEEECCCC-CCEEEEE----------------EEcCCCCcEEEeeEecCC---C
Confidence 211100 0000 001278999999988765320 1122333 344445665444221100 0
Q ss_pred eeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEe
Q 007620 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (595)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt 468 (595)
.+. ...|++|+++|++.... ..--.+|.+|..+++++.+.
T Consensus 307 ~~~-------~~~~spdg~~l~~~~~~-~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 307 HPR-------NFIITPNGKYLLVACRD-TNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp CCC-------EEEECTTSCEEEEEETT-TTEEEEEEECTTTCCEEECS
T ss_pred CCc-------eEEECCCCCEEEEEECC-CCCEEEEEEECCCCcEeecc
Confidence 111 24689999988776533 33334566787777765553
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-07 Score=97.98 Aligned_cols=248 Identities=12% Similarity=0.096 Sum_probs=146.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+|+|+. +|+...+........+....|||||+.||.... ...|.++++.+++.........
T Consensus 114 ~v~lw~~~----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~--- 176 (401)
T 4aez_A 114 NVYVWNAD----SGSVSALAETDESTYVASVKWSHDGSFLSVGLG----------NGLVDIYDVESQTKLRTMAGHQ--- 176 (401)
T ss_dssp EEEEEETT----TCCEEEEEECCTTCCEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCS---
T ss_pred eEEEeeCC----CCcEeEeeecCCCCCEEEEEECCCCCEEEEECC----------CCeEEEEECcCCeEEEEecCCC---
Confidence 58899998 777766665444446889999999999887653 2467777988877544432221
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
..+..+.| +++.|+.... ...|.++++.
T Consensus 177 -~~v~~~~~--~~~~l~~~~~-------------------------------------------------dg~i~i~d~~ 204 (401)
T 4aez_A 177 -ARVGCLSW--NRHVLSSGSR-------------------------------------------------SGAIHHHDVR 204 (401)
T ss_dssp -SCEEEEEE--ETTEEEEEET-------------------------------------------------TSEEEEEETT
T ss_pred -CceEEEEE--CCCEEEEEcC-------------------------------------------------CCCEEEEecc
Confidence 14667888 4555554321 1234445552
Q ss_pred -C-C-eeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 166 -G-T-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 166 -g-~-~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+ . ...+. ....+..++|+|||+.|+....+ ..+.+||+.++.. ..+....
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~------------ 259 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKTNHN------------ 259 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEECCCS------------
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEecCCc------------
Confidence 2 2 22232 23356689999999998877642 3688999886543 3332211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeec
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
.....+.|+|++...++.. ++ .....+.+++. ..++..........+..+.|+|++..++......
T Consensus 260 -~~v~~~~~~p~~~~ll~~~----~g------s~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 260 -AAVKAVAWCPWQSNLLATG----GG------TMDKQIHFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp -SCCCEEEECTTSTTEEEEE----CC------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred -ceEEEEEECCCCCCEEEEe----cC------CCCCEEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 1235689999987533221 10 12346777786 3334444334455678899999999877653223
Q ss_pred ccceEEEEEeCCCCCCCcEEEe--ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 321 TSQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 321 ~~~~~L~~~d~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++ .|.++|+.++ ....+. ..... ....+.|+++|+.|+...
T Consensus 326 dg--~i~v~~~~~~--~~~~~~~~~~h~~------~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 326 DN--NLSIWSYSSS--GLTKQVDIPAHDT------RVLYSALSPDGRILSTAA 368 (401)
T ss_dssp TC--EEEEEEEETT--EEEEEEEEECCSS------CCCEEEECTTSSEEEEEC
T ss_pred CC--cEEEEecCCc--cceeEEEecCCCC------CEEEEEECCCCCEEEEEe
Confidence 34 4555666552 222221 11100 011278999999877654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.2e-08 Score=96.32 Aligned_cols=248 Identities=8% Similarity=0.011 Sum_probs=145.0
Q ss_pred eeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +++.. .+.. ....+....|+|||+.|+.... ...|.++++.+++.........
T Consensus 55 ~i~vwd~~----~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~-- 116 (369)
T 3zwl_B 55 SASVWYSL----NGERLGTLDG--HTGTIWSIDVDCFTKYCVTGSA----------DYSIKLWDVSNGQCVATWKSPV-- 116 (369)
T ss_dssp CEEEEETT----TCCEEEEECC--CSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSS--
T ss_pred EEEEEeCC----Cchhhhhhhh--cCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEeecCC--
Confidence 47888887 45443 4432 2335889999999998877643 2567888999888665544333
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|+|+++.|+........ ....|.++++
T Consensus 117 ---~v~~~~~~~~~~~l~~~~~~~~~--------------------------------------------~~g~i~~~d~ 149 (369)
T 3zwl_B 117 ---PVKRVEFSPCGNYFLAILDNVMK--------------------------------------------NPGSINIYEI 149 (369)
T ss_dssp ---CEEEEEECTTSSEEEEEECCBTT--------------------------------------------BCCEEEEEEE
T ss_pred ---CeEEEEEccCCCEEEEecCCccC--------------------------------------------CCCEEEEEEe
Confidence 56789999999988876321000 0011222222
Q ss_pred ------------CC-Ceeec-CCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-ceE-EEecc
Q 007620 165 ------------DG-TAKDF-GTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLV-RELCD 226 (595)
Q Consensus 165 ------------~g-~~~~l-t~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~-~~l~~ 226 (595)
.. ....+ .... ....++|+|||+.|++.... ..|.+||+.+ +.. ..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEEC
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEec
Confidence 11 11111 1111 45688999999998877542 3788999875 333 33322
Q ss_pred CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceee
Q 007620 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW 306 (595)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~w 306 (595)
.. .....+.|+|++.. |+.. .....+.++|+ ..++.............+.|
T Consensus 217 ~~-------------~~v~~~~~~~~~~~-l~~~------------~~d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 217 HE-------------KSISDMQFSPDLTY-FITS------------SRDTNSFLVDV---STLQVLKKYETDCPLNTAVI 267 (369)
T ss_dssp CS-------------SCEEEEEECTTSSE-EEEE------------ETTSEEEEEET---TTCCEEEEEECSSCEEEEEE
T ss_pred CC-------------CceeEEEECCCCCE-EEEe------------cCCceEEEEEC---CCCceeeeecCCCCceeEEe
Confidence 11 11345889999873 3322 12246777786 33344443444556778899
Q ss_pred cCCCcEEEEEEeec----------ccceEEEEEeCCCCCCCcEEEee---cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 307 CDDSLALVNETWYK----------TSQTRTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 307 spDg~~l~~~~~~~----------~~~~~L~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+|++..++...... .+...+.++|+.++ +....+. ..+.. +.|+++|+.|+...
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~---------~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFGPLNT---------VAISPQGTSYASGG 334 (369)
T ss_dssp CSSSSEEEEEECCC-------------CEEEEEETTTC--CEEEEEECCSSCEEE---------EEECTTSSEEEEEE
T ss_pred cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--cchhheecccCcEEE---------EEECCCCCEEEEEc
Confidence 99999876653211 11225777777663 2222221 12222 78999999877654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-07 Score=94.04 Aligned_cols=292 Identities=11% Similarity=0.157 Sum_probs=152.3
Q ss_pred CcccceEEccCCC-EEEEEEecccccccCCCceEEEEEEC----CCCc-------eEecccCCCcc-----ccccccceE
Q 007620 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA----ETGE-------AKPLFESPDIC-----LNAVFGSFV 93 (595)
Q Consensus 31 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~----~~g~-------~~~lt~~~~~~-----~~~~~~~~~ 93 (595)
..+....|||||+ .||.... + ..|.++++ .+++ ...+....... ....+..+.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEK--------N--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEET--------B--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred CceEEEEECCCCCcEEEEecC--------C--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 3588999999999 8776543 2 44555566 6665 23332211000 012467899
Q ss_pred EecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecC
Q 007620 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFG 172 (595)
Q Consensus 94 Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt 172 (595)
|+|||+.|+....+ ..|.+++.+++ ...+.
T Consensus 116 ~s~~~~~l~~~~~d-------------------------------------------------g~i~i~~~~~~~~~~~~ 146 (425)
T 1r5m_A 116 WSHDGNSIVTGVEN-------------------------------------------------GELRLWNKTGALLNVLN 146 (425)
T ss_dssp ECTTSSEEEEEETT-------------------------------------------------SCEEEEETTSCEEEEEC
T ss_pred EcCCCCEEEEEeCC-------------------------------------------------CeEEEEeCCCCeeeecc
Confidence 99999988875211 12334444443 33333
Q ss_pred -CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcc---ccccccCCCCce
Q 007620 173 -TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC---YNSVREGMRSIS 248 (595)
Q Consensus 173 -~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 248 (595)
....+..+.|+|++++|+..... ..+.+||+.+++................ ..........+.
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVE-------------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred CCCccEEEEEECCCCCEEEEEecC-------------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence 23356689999999998877642 3688999876654332221110000000 000000034577
Q ss_pred eecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 249 wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
|++++. ++.. .....+++++. ..++.. .+......+..+.|+|++..|+... .++ .|.
T Consensus 214 ~~~~~~--~~~~------------~~~g~i~~~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~--~i~ 272 (425)
T 1r5m_A 214 WVDDDK--FVIP------------GPKGAIFVYQI---TEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS--DDG--TLR 272 (425)
T ss_dssp EEETTE--EEEE------------CGGGCEEEEET---TCSSCSEEECCCSSCEEEEEEETTTTEEEEEE--TTS--CEE
T ss_pred EcCCCE--EEEE------------cCCCeEEEEEc---CCCceeeeeccCCCceEEEEECCCCCEEEEEc--CCC--EEE
Confidence 888754 3222 12345677776 323333 3333445677899999998776653 223 577
Q ss_pred EEeCCCCCCCcEEEe--ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCC
Q 007620 328 LVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (595)
Q Consensus 328 ~~d~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (595)
++|+.+++ ....+. ...+.. +.|+++| .++.... ...+. .+|+.++
T Consensus 273 i~d~~~~~-~~~~~~~~~~~i~~---------~~~~~~~-~l~~~~~-----d~~i~----------------i~d~~~~ 320 (425)
T 1r5m_A 273 IWHGGNGN-SQNCFYGHSQSIVS---------ASWVGDD-KVISCSM-----DGSVR----------------LWSLKQN 320 (425)
T ss_dssp EECSSSBS-CSEEECCCSSCEEE---------EEEETTT-EEEEEET-----TSEEE----------------EEETTTT
T ss_pred EEECCCCc-cceEecCCCccEEE---------EEECCCC-EEEEEeC-----CCcEE----------------EEECCCC
Confidence 77877632 223332 112222 7899998 4444332 11222 3466666
Q ss_pred ceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCC
Q 007620 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (595)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~ 462 (595)
+......... ..+.. ..|+++++.|+..... ..+.++++..+
T Consensus 321 ~~~~~~~~~~----~~i~~-------~~~s~~~~~l~~~~~d----g~i~i~~~~~~ 362 (425)
T 1r5m_A 321 TLLALSIVDG----VPIFA-------GRISQDGQKYAVAFMD----GQVNVYDLKKL 362 (425)
T ss_dssp EEEEEEECTT----CCEEE-------EEECTTSSEEEEEETT----SCEEEEECHHH
T ss_pred cEeEecccCC----ccEEE-------EEEcCCCCEEEEEECC----CeEEEEECCCC
Confidence 5444332211 11221 3578888876654422 45788887544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-08 Score=97.03 Aligned_cols=231 Identities=14% Similarity=0.107 Sum_probs=126.1
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc---eEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~ 82 (595)
.|.++++.. .+|+.+.+..+.........+|||||++|++.... ...|.++++..+. ..+......
T Consensus 61 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~ 129 (343)
T 1ri6_A 61 RVLAYRIAP--DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLEDGLPVGVVDVVEGLD 129 (343)
T ss_dssp EEEEEEECT--TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEETTEEEEEEEEECCCT
T ss_pred eEEEEEecC--CCCceeeccccccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECCCCccccccccccCCC
Confidence 466666642 24565555444433357788999999998776532 3456666763332 222222111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.+..+.|+|||+.|++.... ...|+++
T Consensus 130 -----~~~~~~~s~dg~~l~~~~~~------------------------------------------------~~~v~~~ 156 (343)
T 1ri6_A 130 -----GCHSANISPDNRTLWVPALK------------------------------------------------QDRICLF 156 (343)
T ss_dssp -----TBCCCEECTTSSEEEEEEGG------------------------------------------------GTEEEEE
T ss_pred -----CceEEEECCCCCEEEEecCC------------------------------------------------CCEEEEE
Confidence 35688999999988775210 1234455
Q ss_pred cC-C-CCeee-----cC--CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC--CceEEE---eccCC
Q 007620 163 SL-D-GTAKD-----FG--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRE---LCDLP 228 (595)
Q Consensus 163 d~-~-g~~~~-----lt--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~---l~~~~ 228 (595)
++ + ++... +. .......++|+|||++|+++.... ..+.+|+++ +++... +...+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~------------~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN------------SSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT------------TEEEEEESSCTTSCCEEEEEEECSC
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC------------CEEEEEEecCCCCcEEEEeeccccC
Confidence 55 2 43321 11 122345789999999998876322 367888874 444322 22221
Q ss_pred CCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceee
Q 007620 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSW 306 (595)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~w 306 (595)
.. ..+ ......+.|+|||+. |+... .....+.+++. ...++..+.+. ........+.|
T Consensus 225 ~~------~~~-~~~~~~i~~s~dg~~-l~v~~-----------~~~~~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 284 (343)
T 1ri6_A 225 EN------FSD-TRWAADIHITPDGRH-LYACD-----------RTASLITVFSV-SEDGSVLSKEGFQPTETQPRGFNV 284 (343)
T ss_dssp TT------CCS-CCCEEEEEECTTSSE-EEEEE-----------TTTTEEEEEEE-CTTSCCEEEEEEEECSSSCCCEEE
T ss_pred cc------ccc-cCCccceEECCCCCE-EEEEe-----------cCCCEEEEEEE-cCCCCceEEeeeecCCCccceEEE
Confidence 10 000 001124889999973 44331 11245666665 11133333332 22233678899
Q ss_pred cCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 307 CDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 307 spDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+|||..++... ...+...+|.+|..+
T Consensus 285 s~dg~~l~~~~-~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 285 DHSGKYLIAAG-QKSHHISVYEIVGEQ 310 (343)
T ss_dssp CTTSSEEEEEC-TTTCEEEEEEEETTT
T ss_pred CCCCCEEEEec-CCCCeEEEEEEcCCC
Confidence 99998766543 223455777778777
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-07 Score=96.09 Aligned_cols=116 Identities=9% Similarity=-0.078 Sum_probs=68.1
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE--eccCCCCccCCccccccccCCCCceeecC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (595)
.....++|+|||++|++... ...+++|++.++.... +.. +.+.......+.|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~-------------~g~v~~~~~~~~~~~~~~~~~----------~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADK-------------FGDVYSIDINSIPEEKFTQEP----------ILGHVSMLTDVHLIKD 206 (450)
T ss_dssp SCEEEEEECTTSSEEEEEET-------------TSEEEEEETTSCCCSSCCCCC----------SEECSSCEEEEEEEEC
T ss_pred CCceEEEEcCCCCEEEEEeC-------------CCcEEEEecCCccccccccee----------eecccCceEEEEEcCC
Confidence 34568999999999988753 2368888877544221 100 0111112346789999
Q ss_pred ---CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-e-ccccCccccceeecCCCcEEEEEEeecccceEEE
Q 007620 253 ---KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-I-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 253 ---g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~ 327 (595)
++. |+.. .....+++|++ ..++.. . +......+..+.|+ |+..|+... .++ .|.
T Consensus 207 ~~~~~~-l~s~------------~~d~~i~vwd~---~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~--~d~--~v~ 265 (450)
T 2vdu_B 207 SDGHQF-IITS------------DRDEHIKISHY---PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG--GDD--KIF 265 (450)
T ss_dssp TTSCEE-EEEE------------ETTSCEEEEEE---SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE--SSS--EEE
T ss_pred CCCCcE-EEEE------------cCCCcEEEEEC---CCCceeeeeecCCCCceEEEEEC-CCCEEEEEe--CCC--eEE
Confidence 652 3322 11235677775 323332 2 22344567789999 998877654 223 677
Q ss_pred EEeCCCC
Q 007620 328 LVCPGSK 334 (595)
Q Consensus 328 ~~d~~~~ 334 (595)
++|+.++
T Consensus 266 vwd~~~~ 272 (450)
T 2vdu_B 266 AWDWKTG 272 (450)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 7888774
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-07 Score=91.49 Aligned_cols=296 Identities=9% Similarity=0.056 Sum_probs=159.5
Q ss_pred cccceEEccCC-CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEec-CCcEEEEEecCCC
Q 007620 32 KINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-dg~~l~~~~~~~~ 109 (595)
.+....|+||| +.||.... ...|.++++.+++......... ....+..+.|+| +++.|+....
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~--- 139 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK----------GGDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSSI--- 139 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB----------TSCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEET---
T ss_pred CEEEEEECCCCCCEEEEEcC----------CCeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEeC---
Confidence 58899999999 66655542 2456677988877555433211 112567899999 5566655421
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCC----CCeeeeeEECC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT----PAVYTAVEPSP 184 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~----~~~~~~~~~Sp 184 (595)
...|.++++.+ ..+.+.. ...+..++|+|
T Consensus 140 ----------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 140 ----------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp ----------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET
T ss_pred ----------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECC
Confidence 12344455533 2333221 12456899999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
|++.|+....+ ..+.+||+.+.....+.... .....+.|+|+++..++..
T Consensus 174 ~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~s~---- 223 (383)
T 3ei3_B 174 SRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMATS---- 223 (383)
T ss_dssp TTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEEEE----
T ss_pred CCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEEEE----
Confidence 99988877542 37899999777666654321 1134688999987433332
Q ss_pred CCCcccccCCcceEEeccCCCCCC---CCceeccccCccccceeecC-CCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEG---EKPEILHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g---~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
.....+.++|+ .++ +...........+..+.|+| |+..|+.... ++ .|.++|+.+++ ....
T Consensus 224 --------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~--d~--~i~iwd~~~~~-~~~~ 288 (383)
T 3ei3_B 224 --------SVDATVKLWDL--RNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ--RN--EIRVYSSYDWS-KPDQ 288 (383)
T ss_dssp --------ETTSEEEEEEG--GGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES--SS--EEEEEETTBTT-SCSE
T ss_pred --------eCCCEEEEEeC--CCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC--CC--cEEEEECCCCc-cccc
Confidence 11235666675 111 12222223455678899999 9988776542 23 67778887742 2233
Q ss_pred EeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccce
Q 007620 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (595)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (595)
+...... ...........|+|++..+.+..... +. + ++. ....+..+|+.+++......... ..
T Consensus 289 ~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~s~d---g~-~--s~s------~d~~i~iwd~~~~~~~~~l~~~~---~~ 352 (383)
T 3ei3_B 289 IIIHPHR-QFQHLTPIKATWHPMYDLIVAGRYPD---DQ-L--LLN------DKRTIDIYDANSGGLVHQLRDPN---AA 352 (383)
T ss_dssp EEECCBC-CCTTSCCCCCEECSSSSEEEEECBCC---TT-T--CTT------CCCCEEEEETTTCCEEEEECBTT---BC
T ss_pred ccccccc-ccccccceEEeccCCCCceEEEecCC---cc-c--ccC------CCCeEEEEecCCCceeeeecCCC---CC
Confidence 3221110 00000111247888887766554321 11 1 110 01123346777776543332210 01
Q ss_pred eeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 421 ~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
.... ...|++++..|+.. ++ ..+.+.+++
T Consensus 353 ~~~~------~~~~s~~g~~l~s~-sd----~~i~iw~~~ 381 (383)
T 3ei3_B 353 GIIS------LNKFSPTGDVLASG-MG----FNILIWNRE 381 (383)
T ss_dssp SCCC------EEEECTTSSEEEEE-ET----TEEEEEECC
T ss_pred ceEE------EEEEecCccEEEEe-cC----CcEEEEecC
Confidence 1111 12688888866544 32 557777764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=102.97 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=115.2
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
+...+|||||++||..+.. ....|.++|+.+++......... .+.++.|+|||++|+....+
T Consensus 136 ~~~v~fSpDg~~la~as~~--------~d~~i~iwd~~~~~~~~~~~~~~-----~V~~v~fspdg~~l~s~s~~----- 197 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSK--------VPAIMRIIDPSDLTEKFEIETRG-----EVKDLHFSTDGKVVAYITGS----- 197 (365)
T ss_dssp EEEEEECTTSSCEEEEESC--------SSCEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSSEEEEECSS-----
T ss_pred EEEEEEcCCCCEEEEEECC--------CCCEEEEeECCCCcEEEEeCCCC-----ceEEEEEccCCceEEeccce-----
Confidence 4457899999999886642 23567778999887655443332 56789999999988775210
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC---CCCeeeeeEECCCCC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG---TPAVYTAVEPSPDQK 187 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt---~~~~~~~~~~SpDg~ 187 (595)
.+.+++. +++. ...+ ....+..++|||||+
T Consensus 198 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 198 ---------------------------------------------SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp ---------------------------------------------CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred ---------------------------------------------eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 1122222 3321 1111 122456889999999
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
.++..+.... ....++.|++.......+..... .+.......+.|+|||+. |+..
T Consensus 233 ~l~~~s~d~~---------~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~V~~~~~Spdg~~-lasg------- 287 (365)
T 4h5i_A 233 VLIAASLKKG---------KGIVLTKISIKSGNTSVLRSKQV--------TNRFKGITSMDVDMKGEL-AVLA------- 287 (365)
T ss_dssp EEEEEEESSS---------CCEEEEEEEEETTEEEEEEEEEE--------ESSCSCEEEEEECTTSCE-EEEE-------
T ss_pred EEEEEecCCc---------ceeEEeecccccceecceeeeee--------cCCCCCeEeEEECCCCCc-eEEE-------
Confidence 9988765432 12356777766543322110000 000011345789999983 3322
Q ss_pred cccccCCcceEEeccCCCCCCCCce-ec-cccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPE-IL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~-~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
.....+.+||+ ..++.. .+ ......+..+.|||||+.|+..+. ++..+||-+
T Consensus 288 -----s~D~~V~iwd~---~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~--D~tvrvw~i 341 (365)
T 4h5i_A 288 -----SNDNSIALVKL---KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA--ANTIHIIKL 341 (365)
T ss_dssp -----ETTSCEEEEET---TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET--TSEEEEEEC
T ss_pred -----cCCCEEEEEEC---CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC--CCeEEEEEc
Confidence 11235777786 333432 22 234556789999999999887652 343455544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.3e-07 Score=96.33 Aligned_cols=218 Identities=9% Similarity=0.062 Sum_probs=123.9
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE---ecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~ 82 (595)
.+.|+++.+ +...+.++++. ..+...+|||||++||-... + ..|.++|+.+++.. .+.....
T Consensus 40 ~v~l~~~~~---~~~~~~~~~h~--~~v~~~~~spdg~~lasg~~--------d--~~v~lWd~~~~~~~~~~~~~~~~~ 104 (611)
T 1nr0_A 40 SVYTVPVGS---LTDTEIYTEHS--HQTTVAKTSPSGYYCASGDV--------H--GNVRIWDTTQTTHILKTTIPVFSG 104 (611)
T ss_dssp EEEEEETTC---SSCCEEECCCS--SCEEEEEECTTSSEEEEEET--------T--SEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEecCCC---cccCeEecCCC--CceEEEEECCCCcEEEEEeC--------C--CCEEEeECCCCcceeeEeecccCC
Confidence 577888872 33444555433 35888999999998877653 2 34555687654422 2222222
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.+..+.|+|||+.|+...... . ....++++
T Consensus 105 -----~v~~v~fs~dg~~l~~~~~~~---------------------~------------------------~~~~v~~w 134 (611)
T 1nr0_A 105 -----PVKDISWDSESKRIAAVGEGR---------------------E------------------------RFGHVFLF 134 (611)
T ss_dssp -----CEEEEEECTTSCEEEEEECCS---------------------S------------------------CSEEEEET
T ss_pred -----ceEEEEECCCCCEEEEEECCC---------------------C------------------------ceeEEEEe
Confidence 567899999999988753210 0 01234444
Q ss_pred cCCCCeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 163 SLDGTAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 163 d~~g~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+.......+. ....+..++|+||+..++++.... ..+.+||...++. ..+...
T Consensus 135 d~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D------------~~v~lwd~~~~~~~~~l~~H------------- 189 (611)
T 1nr0_A 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD------------NTVAIFEGPPFKFKSTFGEH------------- 189 (611)
T ss_dssp TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT------------SCEEEEETTTBEEEEEECCC-------------
T ss_pred eCCCCcceecCCCCCceEEEECCCCCeEEEEEeCC------------CeEEEEECCCCeEeeeeccc-------------
Confidence 4311222222 223466899999998644443322 3678888776543 233221
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecc-------ccCccccceeecCCCcE
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-------KLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~-------~~~~~~~~~~wspDg~~ 312 (595)
......+.|+|||+. |+-. .....+.+|+. ..++.. .+. .....+..+.|+|||..
T Consensus 190 ~~~V~~v~fspdg~~-las~------------s~D~~i~lwd~---~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSL-FAST------------GGDGTIVLYNG---VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp SSCEEEEEECTTSSE-EEEE------------ETTSCEEEEET---TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred cCceEEEEECCCCCE-EEEE------------ECCCcEEEEEC---CCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence 112346889999983 3222 11235666775 223332 221 23345678999999998
Q ss_pred EEEEEeecccceEEEEEeCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~ 333 (595)
|+... .++ .|.++|+.+
T Consensus 254 l~s~s--~D~--~v~lWd~~~ 270 (611)
T 1nr0_A 254 IASAS--ADK--TIKIWNVAT 270 (611)
T ss_dssp EEEEE--TTS--EEEEEETTT
T ss_pred EEEEe--CCC--eEEEEeCCC
Confidence 87654 223 466667776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-07 Score=94.01 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=122.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||+.||.... + ..|.+++..+.....+..... .+..+.|+|+++.|+....+..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~--------d--g~i~i~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~-- 172 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVE--------N--GELRLWNKTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVENV-- 172 (425)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCC--
T ss_pred ceEEEEEcCCCCEEEEEeC--------C--CeEEEEeCCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCCe--
Confidence 5888999999999887653 2 346666755444555543333 5678999999998887532110
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Ceee-----c-CCCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKD-----F-GTPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~-----l-t~~~~~~~~~~Sp 184 (595)
. ..+ ++ . ....+..+.... .... . ........+.|+|
T Consensus 173 -----------i------------~iw-d~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 173 -----------T------------ILW-NV----I--------SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp -----------E------------EEE-ET----T--------TTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred -----------E------------EEE-EC----C--------CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 0 000 00 0 000111111100 0000 0 0111245788999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
++. +++... ...+.+||+.+++. ..+.... .....+.|+|+++. |+..
T Consensus 217 ~~~-~~~~~~-------------~g~i~~~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~-l~~~--- 265 (425)
T 1r5m_A 217 DDK-FVIPGP-------------KGAIFVYQITEKTPTGKLIGHH-------------GPISVLEFNDTNKL-LLSA--- 265 (425)
T ss_dssp TTE-EEEECG-------------GGCEEEEETTCSSCSEEECCCS-------------SCEEEEEEETTTTE-EEEE---
T ss_pred CCE-EEEEcC-------------CCeEEEEEcCCCceeeeeccCC-------------CceEEEEECCCCCE-EEEE---
Confidence 865 443332 23788999876543 2222110 11245889999873 3322
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.....+.+++. ..++. ..+......+..+.|+|++ .++... .++ .|.++|+.++ +....+
T Consensus 266 ---------~~d~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~d~--~i~i~d~~~~--~~~~~~ 326 (425)
T 1r5m_A 266 ---------SDDGTLRIWHG---GNGNSQNCFYGHSQSIVSASWVGDD-KVISCS--MDG--SVRLWSLKQN--TLLALS 326 (425)
T ss_dssp ---------ETTSCEEEECS---SSBSCSEEECCCSSCEEEEEEETTT-EEEEEE--TTS--EEEEEETTTT--EEEEEE
T ss_pred ---------cCCCEEEEEEC---CCCccceEecCCCccEEEEEECCCC-EEEEEe--CCC--cEEEEECCCC--cEeEec
Confidence 11235677775 32233 3343345567789999999 555443 223 6788888763 222222
Q ss_pred e---cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 343 D---RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 343 ~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. ..+.. +.|+++|+.++...
T Consensus 327 ~~~~~~i~~---------~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 327 IVDGVPIFA---------GRISQDGQKYAVAF 349 (425)
T ss_dssp ECTTCCEEE---------EEECTTSSEEEEEE
T ss_pred ccCCccEEE---------EEEcCCCCEEEEEE
Confidence 2 12222 78999999877665
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-07 Score=96.10 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=96.2
Q ss_pred eeEEEecCCCCCCCCceeeecC--CCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC-CCceEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGY--PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~--~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~ 82 (595)
.||+.++.. .+|+...+... ..........|||||++|+.. .. . .|.+++++ +|+..++.....
T Consensus 15 ~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~-~~--------~--~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-AM--------K--KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-EB--------T--EEEEEEEEETTEEEEEEEEEC
T ss_pred cEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEE-cc--------c--eEEEEEECCCCCEEEeeEeec
Confidence 588877642 36666655432 122246788999999987544 32 2 56677765 677655432211
Q ss_pred ccccccccceEEecCCcEE-EEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLL-IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. +....+.|+|||+.| ++..... .. . .+... .+..+ ....+|.
T Consensus 82 ~---g~~~~~~~spdg~~l~~~~~~~~--~~-----------~------------~~~~~-~~~~~-------g~v~v~~ 125 (365)
T 1jof_A 82 G---GHPRANDADTNTRAIFLLAAKQP--PY-----------A------------VYANP-FYKFA-------GYGNVFS 125 (365)
T ss_dssp C---SSGGGGCTTSCCEEEEEEECSST--TC-----------C------------EEEEE-ESSSC-------CEEEEEE
T ss_pred C---CCCccEEECCCCCEEEEEEecCC--cc-----------e------------eccce-eecCC-------ceEEEEc
Confidence 0 123468899999974 3442100 00 0 00000 00000 1123444
Q ss_pred EcCCCCee-ecC-----CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCC
Q 007620 162 GSLDGTAK-DFG-----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIP 234 (595)
Q Consensus 162 ~d~~g~~~-~lt-----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~ 234 (595)
++.+|+.. .+. .......+.|||||++|+++... ...|++|+++ +++...+.......
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~~--- 190 (365)
T 1jof_A 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAPD--- 190 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECSS---
T ss_pred cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecCC---
Confidence 44345432 221 22345688999999998766422 2368889887 66554432211000
Q ss_pred ccccccccCCCCceeecCCCeeEEEE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
...+++.+.|+|||+. ||..
T Consensus 191 -----~g~~p~~~~~spdg~~-l~v~ 210 (365)
T 1jof_A 191 -----PGDHPRWVAMHPTGNY-LYAL 210 (365)
T ss_dssp -----TTCCEEEEEECTTSSE-EEEE
T ss_pred -----CCCCCCEeEECCCCCE-EEEE
Confidence 0012456889999983 5443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-07 Score=97.14 Aligned_cols=262 Identities=14% Similarity=0.098 Sum_probs=143.3
Q ss_pred eeEEEec--CCCCCCCCceeeecCCCCCcccceEEcc----CCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc
Q 007620 6 GIGIHRL--LPDDSLGPEKEVHGYPDGAKINFVSWSP----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 6 ~~~~~~~--~~~~~~g~~~~lt~~~~~~~~~~~~~SP----DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
.|.+.|+ . +++... .++.+.......||| ||++|+..... ...|.++|..+++..+...
T Consensus 201 ~V~v~D~~~~----t~~~~~--~i~~g~~p~~va~sp~~~~dg~~l~v~~~~---------~~~v~v~D~~t~~~~~~i~ 265 (543)
T 1nir_A 201 RIDMIDLWAK----EPTKVA--EIKIGIEARSVESSKFKGYEDRYTIAGAYW---------PPQFAIMDGETLEPKQIVS 265 (543)
T ss_dssp EEEEEETTSS----SCEEEE--EEECCSEEEEEEECCSTTCTTTEEEEEEEE---------SSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECcCC----CCcEEE--EEecCCCcceEEeCCCcCCCCCEEEEEEcc---------CCeEEEEeccccccceeec
Confidence 4677788 4 443322 223444678889999 99987665422 3678888999888655433
Q ss_pred CCCccc-------cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceE
Q 007620 80 SPDICL-------NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD 152 (595)
Q Consensus 80 ~~~~~~-------~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (595)
...... ...+..+.+||+++.+++...
T Consensus 266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~---------------------------------------------- 299 (543)
T 1nir_A 266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK---------------------------------------------- 299 (543)
T ss_dssp CCEECSSSCCEESCCCEEEEEECSSSSEEEEEET----------------------------------------------
T ss_pred ccCcccCccccccCCceEEEEECCCCCEEEEEEC----------------------------------------------
Confidence 211000 012346788888887666421
Q ss_pred EeecceEEEEcC-CCC-ee--ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCC
Q 007620 153 YYTTAQLVLGSL-DGT-AK--DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (595)
Q Consensus 153 ~~~~~~l~~~d~-~g~-~~--~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~ 228 (595)
....|+++|+ +++ .+ .+........+.|+|||++++++.... ..|.+||+.+++........
T Consensus 300 --~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~------------~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 300 --ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNS------------NKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp --TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEEEECS
T ss_pred --CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCC------------CeEEEEECCCCeEEEeeccC
Confidence 0235667776 332 22 333334456789999999998776432 36889999877654432110
Q ss_pred CCccCCccccccccCCCCcee-ecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCC----CCc-eeccccCcccc
Q 007620 229 PAEDIPVCYNSVREGMRSISW-RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG----EKP-EILHKLDLRFR 302 (595)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~w-spdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g----~~~-~~l~~~~~~~~ 302 (595)
..|- . .+...| +|++.. ++.... ...+.+.+++.++... .+. +.+........
T Consensus 366 ---~~ph------~-g~g~~~~~p~~g~-~~~s~~----------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~ 424 (543)
T 1nir_A 366 ---KTPH------P-GRGANFVHPKYGP-VWSTSH----------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL 424 (543)
T ss_dssp ---SSBC------C-TTCEEEEETTTEE-EEEEEB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred ---CCCC------C-CCCcccCCCCCcc-EEEecc----------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce
Confidence 0000 0 122333 566432 432211 1123566667521100 121 22322233446
Q ss_pred ceeecCCCcEEEEEEeecc---cceEEEEEeCCCCCCCcEEE-e---------ecccccccCCCCCCCeeeCCCCCEEEE
Q 007620 303 SVSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVL-F---------DRVFENVYSDPGSPMMTRTSTGTNVIA 369 (595)
Q Consensus 303 ~~~wspDg~~l~~~~~~~~---~~~~L~~~d~~~~~~~~~~l-~---------~~~~~~~~~~~~~~~~~~~~dg~~l~~ 369 (595)
.+.++|||+.|+....... ....|.++|+++.+...+.| . ...+.. +.+++||+.+++
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~g~~~~~ 495 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ---------PEYNKRGDEVWF 495 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE---------EEECSSSSEEEE
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe---------ccCCCCCCEEEE
Confidence 6889999998776531111 12378899998854221333 1 111222 789999999998
Q ss_pred Eee
Q 007620 370 KIK 372 (595)
Q Consensus 370 ~~~ 372 (595)
...
T Consensus 496 s~~ 498 (543)
T 1nir_A 496 SVW 498 (543)
T ss_dssp EEE
T ss_pred Eee
Confidence 763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-07 Score=103.03 Aligned_cols=228 Identities=13% Similarity=0.124 Sum_probs=137.4
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCccccccccceEEecCCc
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
.+.++.... .+...+|||||++||.... ...|.++++.+++... +..... .+..+.|+|||+
T Consensus 6 ~~~~~~h~~--~v~~i~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~ 68 (814)
T 3mkq_A 6 KKTFSNRSD--RVKGIDFHPTEPWVLTTLY----------SGRVEIWNYETQVEVRSIQVTET-----PVRAGKFIARKN 68 (814)
T ss_dssp EEEEEEECS--CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGT
T ss_pred ceeeecCCC--ceEEEEECCCCCEEEEEeC----------CCEEEEEECCCCceEEEEecCCC-----cEEEEEEeCCCC
Confidence 345554333 4889999999999988753 2567777988876443 332222 577899999999
Q ss_pred EEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCe
Q 007620 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAV 176 (595)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~ 176 (595)
.|+.... ...|.++++ +++ ...+. ....
T Consensus 69 ~l~~~~~-------------------------------------------------dg~i~vw~~~~~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 69 WIIVGSD-------------------------------------------------DFRIRVFNYNTGEKVVDFEAHPDY 99 (814)
T ss_dssp EEEEEET-------------------------------------------------TSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEEeC-------------------------------------------------CCeEEEEECCCCcEEEEEecCCCC
Confidence 9888521 124555666 443 33333 3345
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eE-EEeccCCCCccCCccccccccCCCCceeec-CC
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV-RELCDLPPAEDIPVCYNSVREGMRSISWRA-DK 253 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp-dg 253 (595)
+..++|||||++|+..... ..+.+||+.++ .. ..+.... .....+.|+| ++
T Consensus 100 v~~~~~s~~~~~l~~~~~d-------------g~i~vw~~~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~ 153 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDP 153 (814)
T ss_dssp EEEEEECSSSSEEEEEETT-------------SEEEEEEGGGTSEEEEEEECCS-------------SCEEEEEEETTEE
T ss_pred EEEEEEeCCCCEEEEEcCC-------------CEEEEEECCCCceEEEEEcCCC-------------CcEEEEEEEcCCC
Confidence 6789999999998876532 36888988754 33 3332211 1124578998 55
Q ss_pred CeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecccc-CccccceeecC--CCcEEEEEEeecccceEEEEE
Q 007620 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKL-DLRFRSVSWCD--DSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~-~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~L~~~ 329 (595)
. .++.. .....+.+++. ..+... .+... ...+..+.|+| ++..++... .++ .|.++
T Consensus 154 ~-~l~~~------------~~dg~v~vwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg--~i~~~ 213 (814)
T 3mkq_A 154 S-TFASG------------CLDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDL--TIKIW 213 (814)
T ss_dssp E-EEEEE------------ETTSEEEEEET---TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC--TTS--EEEEE
T ss_pred C-EEEEE------------eCCCeEEEEEC---CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe--CCC--EEEEE
Confidence 4 23332 11235677775 322332 23222 25567889998 888776653 223 67778
Q ss_pred eCCCCCCCcEEEee-c--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 330 CPGSKDVAPRVLFD-R--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 330 d~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
|+.++ +....+. + .+.. +.|+|+|+.++...
T Consensus 214 d~~~~--~~~~~~~~~~~~v~~---------~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 214 DYQTK--SCVATLEGHMSNVSF---------AVFHPTLPIIISGS 247 (814)
T ss_dssp ETTTT--EEEEEEECCSSCEEE---------EEECSSSSEEEEEE
T ss_pred ECCCC--cEEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 88763 2222222 1 2222 78999999776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-07 Score=92.22 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=70.8
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~ 114 (595)
.+.++++++.+ ++.. ....|+++|+++++.......... .....+.|+|||+.|++....
T Consensus 4 g~~~~~~~~~~-v~~~---------~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~~------- 63 (349)
T 1jmx_B 4 GPALKAGHEYM-IVTN---------YPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNNH------- 63 (349)
T ss_dssp CCCCCTTCEEE-EEEE---------TTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEETT-------
T ss_pred cccccCCCEEE-EEeC---------CCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeCC-------
Confidence 45677777543 3332 247899999998876544332220 024578999999987775210
Q ss_pred ccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecCCCC-------eeeeeEECCC
Q 007620 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA-------VYTAVEPSPD 185 (595)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~-------~~~~~~~SpD 185 (595)
...|+++|+ +++.. .+.... ....++||||
T Consensus 64 -----------------------------------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 64 -----------------------------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp -----------------------------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred -----------------------------------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC
Confidence 134666777 44432 222111 1347899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
|++|++......... ..+......+++||+.+++
T Consensus 103 g~~l~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 103 GKEVYATVNPTQRLN-DHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp SSEEEEEEEEEEECS-SCEEECCCEEEEEEGGGGG
T ss_pred CCEEEEEcccccccc-cccccCCCeEEEEECCCcc
Confidence 999998864310000 0000012479999987643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-07 Score=93.79 Aligned_cols=209 Identities=11% Similarity=0.144 Sum_probs=124.4
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|.|+. +++. +.+.. ....+....|||||++||.... ...|.++++.+++.........
T Consensus 103 ~i~lWd~~----~~~~~~~~~~--~~~~~~~~~~spdg~~l~~g~~----------dg~v~i~~~~~~~~~~~~~~~~-- 164 (321)
T 3ow8_A 103 HIRLWDLE----NGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTH----------VGKVNIFGVESGKKEYSLDTRG-- 164 (321)
T ss_dssp EEEEEETT----TTEEEEEEEC--CTTCCCCEEECTTSSEEEEECT----------TSEEEEEETTTCSEEEEEECSS--
T ss_pred cEEEEECC----CCCEEEEEeC--CCccEEEEEECCCCCEEEEEcC----------CCcEEEEEcCCCceeEEecCCC--
Confidence 46778887 4443 34442 2224678999999999877542 3567777988876544322221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
..+..+.|+|||+.|+....+ ..|.++|+
T Consensus 165 --~~v~~~~~spdg~~lasg~~d-------------------------------------------------g~i~iwd~ 193 (321)
T 3ow8_A 165 --KFILSIAYSPDGKYLASGAID-------------------------------------------------GIINIFDI 193 (321)
T ss_dssp --SCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEET
T ss_pred --ceEEEEEECCCCCEEEEEcCC-------------------------------------------------CeEEEEEC
Confidence 145689999999988875211 23445555
Q ss_pred -CCCe-eecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 165 -DGTA-KDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 165 -~g~~-~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+++. ..+.. ...+..++|+|||+.|+....+ ..+.+||+.++.. ..+....
T Consensus 194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d-------------g~i~iwd~~~~~~~~~~~~h~------------ 248 (321)
T 3ow8_A 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD-------------GYIKIYDVQHANLAGTLSGHA------------ 248 (321)
T ss_dssp TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT-------------SCEEEEETTTCCEEEEECCCS------------
T ss_pred CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC-------------CeEEEEECCCcceeEEEcCCC------------
Confidence 4432 23332 2245678999999988776532 3688999875543 3332211
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEee
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWY 319 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (595)
.....+.|+||++. |+.. .....+.+||+ ..++. ..+......+..+.|+|||..|+...
T Consensus 249 -~~v~~~~~sp~~~~-l~s~------------s~D~~v~iwd~---~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~-- 309 (321)
T 3ow8_A 249 -SWVLNVAFCPDDTH-FVSS------------SSDKSVKVWDV---GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG-- 309 (321)
T ss_dssp -SCEEEEEECTTSSE-EEEE------------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--
T ss_pred -CceEEEEECCCCCE-EEEE------------eCCCcEEEEeC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe--
Confidence 11345889999873 3322 11235677776 32232 23434455677899999998877654
Q ss_pred cccceEEE
Q 007620 320 KTSQTRTW 327 (595)
Q Consensus 320 ~~~~~~L~ 327 (595)
.++..+||
T Consensus 310 ~d~~i~vw 317 (321)
T 3ow8_A 310 DDQEIHIY 317 (321)
T ss_dssp TTCCEEEE
T ss_pred CCCeEEEE
Confidence 23433444
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-07 Score=92.25 Aligned_cols=218 Identities=7% Similarity=0.015 Sum_probs=125.0
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~ 113 (595)
...+|||||++|+.... ...|+++++.+++......... ......|++|++.|+....
T Consensus 60 ~~~~~s~~g~~l~~~~~----------d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~------- 117 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARL----------DGHDFLFNTIIRDGSKMLKRAD-----YTAVDTAKLQMRRFILGTT------- 117 (420)
T ss_dssp TTCEEEEEETTEEEEEE----------TTEEEEEECCSEETTTTSCSCC-----EEEEEEECSSSCEEEEEET-------
T ss_pred cceeeeecCCeEEEEEc----------CCcEEEEEecccceeeEEecCC-----ceEEEEEecCCCEEEEEEC-------
Confidence 47899999999887764 2567888887765443332221 2335578999998877521
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeec--CCCCeeeeeEECCCCCeEE
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF--GTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~l--t~~~~~~~~~~SpDg~~l~ 190 (595)
...|.++++ .++...+ .....+..++|+|||+.|+
T Consensus 118 ------------------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 155 (420)
T 3vl1_A 118 ------------------------------------------EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI 155 (420)
T ss_dssp ------------------------------------------TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE
T ss_pred ------------------------------------------CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE
Confidence 123445565 3433333 2234567899999999888
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
....+ ..+.+||+.+++ ...+.... .....+.|+|+++. |+.. ..
T Consensus 156 s~s~d-------------~~i~iwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~s~-~~------ 201 (420)
T 3vl1_A 156 SSSQD-------------MQLKIWSVKDGSNPRTLIGHR-------------ATVTDIAIIDRGRN-VLSA-SL------ 201 (420)
T ss_dssp EEETT-------------SEEEEEETTTCCCCEEEECCS-------------SCEEEEEEETTTTE-EEEE-ET------
T ss_pred EEeCC-------------CeEEEEeCCCCcCceEEcCCC-------------CcEEEEEEcCCCCE-EEEE-cC------
Confidence 77542 378999987543 34443211 11346889999873 3322 11
Q ss_pred cccCCcceEEeccCCCCCCCCcee-ccc------------------------cCccccceeecCCCcEEEEEEeecccce
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEI-LHK------------------------LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~-l~~------------------------~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (595)
...+.+||+ ..++... +.. .......+.|+||+..++... .++
T Consensus 202 -----d~~v~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg-- 269 (420)
T 3vl1_A 202 -----DGTIRLWEC---GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--VSG-- 269 (420)
T ss_dssp -----TSCEEEEET---TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--TTS--
T ss_pred -----CCcEEEeEC---CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc--CCC--
Confidence 123445554 2122111 110 123455688999998877653 223
Q ss_pred EEEEEeCCCCCCCcEEEee---cccccccCCCCCCCeeeCCCCC-EEEEEe
Q 007620 325 RTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGT-NVIAKI 371 (595)
Q Consensus 325 ~L~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~-~l~~~~ 371 (595)
.|.++|+.+++ ....+.. ..+.. +.|+++|+ .++...
T Consensus 270 ~i~i~d~~~~~-~~~~~~~~~~~~v~~---------~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 270 VITVHNVFSKE-QTIQLPSKFTCSCNS---------LTVDGNNANYIYAGY 310 (420)
T ss_dssp CEEEEETTTCC-EEEEECCTTSSCEEE---------EEECSSCTTEEEEEE
T ss_pred eEEEEECCCCc-eeEEcccccCCCcee---------EEEeCCCCCEEEEEe
Confidence 57777887741 1122211 11222 78999998 655443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-06 Score=81.94 Aligned_cols=193 Identities=14% Similarity=0.176 Sum_probs=116.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||++||.... + ..|.++++.+++......... ..+..+.|+||++.|+....
T Consensus 25 ~v~~~~~s~~~~~l~s~~~--------d--g~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~----- 85 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA--------D--KLIKIWGAYDGKFEKTISGHK----LGISDVAWSSDSNLLVSASD----- 85 (312)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSEEEEEET-----
T ss_pred cEEEEEECCCCCEEEEeeC--------C--CeEEEEeCCCcccchhhccCC----CceEEEEEcCCCCEEEEECC-----
Confidence 5888999999998877653 2 346666887777544432221 15678999999998877521
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC-CCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~ 188 (595)
...|.++|+ +++. ..+. .......+.|+|+++.
T Consensus 86 --------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 86 --------------------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp --------------------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred --------------------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 123444555 3432 2332 2234567899999998
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
|+....+ ..+.+||+.+++ ...+.... .....+.|+|+++. ++..
T Consensus 122 l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~~~------- 167 (312)
T 4ery_A 122 IVSGSFD-------------ESVRIWDVKTGKCLKTLPAHS-------------DPVSAVHFNRDGSL-IVSS------- 167 (312)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSE-EEEE-------
T ss_pred EEEEeCC-------------CcEEEEECCCCEEEEEecCCC-------------CcEEEEEEcCCCCE-EEEE-------
Confidence 8877542 368899987554 34433211 11235789999873 3222
Q ss_pred cccccCCcceEEeccCCCCCCCCc-eeccc-cCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
.....+.++|. ..++. ..+.. .......+.|+|++..++... .++ .|.++|+.+
T Consensus 168 -----~~d~~i~~wd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~--~i~iwd~~~ 223 (312)
T 4ery_A 168 -----SYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDN--TLKLWDYSK 223 (312)
T ss_dssp -----ETTSCEEEEET---TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE--TTT--EEEEEETTT
T ss_pred -----eCCCcEEEEEC---CCCceeeEEeccCCCceEEEEECCCCCEEEEEc--CCC--eEEEEECCC
Confidence 11235667775 32232 22222 233456789999999877654 223 677788876
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-06 Score=90.45 Aligned_cols=226 Identities=9% Similarity=0.032 Sum_probs=129.4
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+++|+. +++..... ..........|+|||++||.... ...|.++++.+++...+.....
T Consensus 79 ~v~i~d~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~--- 139 (420)
T 3vl1_A 79 HDFLFNTI----IRDGSKML--KRADYTAVDTAKLQMRRFILGTT----------EGDIKVLDSNFNLQREIDQAHV--- 139 (420)
T ss_dssp EEEEEECC----SEETTTTS--CSCCEEEEEEECSSSCEEEEEET----------TSCEEEECTTSCEEEEETTSSS---
T ss_pred cEEEEEec----ccceeeEE--ecCCceEEEEEecCCCEEEEEEC----------CCCEEEEeCCCcceeeeccccc---
Confidence 47777776 34333222 22234556689999999887653 2457777998887766532221
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
..+..+.|+|+++.|+.... ...|.++|+
T Consensus 140 -~~v~~~~~~~~~~~l~s~s~-------------------------------------------------d~~i~iwd~~ 169 (420)
T 3vl1_A 140 -SEITKLKFFPSGEALISSSQ-------------------------------------------------DMQLKIWSVK 169 (420)
T ss_dssp -SCEEEEEECTTSSEEEEEET-------------------------------------------------TSEEEEEETT
T ss_pred -CccEEEEECCCCCEEEEEeC-------------------------------------------------CCeEEEEeCC
Confidence 15778999999998776521 124555666
Q ss_pred CC-CeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCc---c--
Q 007620 165 DG-TAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPV---C-- 236 (595)
Q Consensus 165 ~g-~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~---~-- 236 (595)
++ ....+. ....+..++|+|||+.|+....+ ..+.+||+.+++.. .+........ +. .
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~ 235 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHD-GVNSIALF 235 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEE
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCC-CccEEEEe
Confidence 44 333443 23456789999999998876542 36889998865543 3322110000 00 0
Q ss_pred -------ccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccc-cCccccceeec
Q 007620 237 -------YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWC 307 (595)
Q Consensus 237 -------~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~-~~~~~~~~~ws 307 (595)
..........+.|+|+++. |+.. .....+.++|+ ..++. ..+.. ....+..+.|+
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~------------~~dg~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKY-VIAG------------HVSGVITVHNV---FSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEE-EEEE------------ETTSCEEEEET---TTCCEEEEECCTTSSCEEEEEEC
T ss_pred cCCcceeeecccCcccceEEcCCCCE-EEEE------------cCCCeEEEEEC---CCCceeEEcccccCCCceeEEEe
Confidence 0000011245788899863 3222 11235667775 32232 22322 34457789999
Q ss_pred CCCc-EEEEEEeecccceEEEEEeCCCC
Q 007620 308 DDSL-ALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 308 pDg~-~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
|++. .++... .++ .|.++|+.++
T Consensus 300 ~~~~~~l~~g~--~dg--~i~vwd~~~~ 323 (420)
T 3vl1_A 300 GNNANYIYAGY--ENG--MLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEE--TTS--EEEEEETTCT
T ss_pred CCCCCEEEEEe--CCC--eEEEEEcCCC
Confidence 9998 666543 223 6777888774
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.4e-07 Score=91.77 Aligned_cols=119 Identities=8% Similarity=0.155 Sum_probs=66.4
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..++|+|||+.|+.. . . ..+.+||+. ++....+.... +..+.+.......+.|+|++.
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-d------------~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-D------------LRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-S------------SEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSCT
T ss_pred ceEEEEEcCCCCEEEEe-C-C------------CeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCCC
Confidence 45689999999988765 3 2 378899988 44333221110 001111112234688999983
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-----eeccccCc------------cccceeecCCCcEEEEEE
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDL------------RFRSVSWCDDSLALVNET 317 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-----~~l~~~~~------------~~~~~~wspDg~~l~~~~ 317 (595)
..|+.. . ....+.++|+ ..++. ..+..... .+..+.|+|||..|+...
T Consensus 240 ~~l~s~-~-----------~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 240 NTFVYS-S-----------SKGTIRLCDM---RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp TEEEEE-E-----------TTSCEEEEET---TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred cEEEEE-e-----------CCCeEEEEEC---cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 334332 1 1235666675 32232 22322222 577899999999877653
Q ss_pred eecccceEEEEEeCCC
Q 007620 318 WYKTSQTRTWLVCPGS 333 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~ 333 (595)
. + .|.++|+..
T Consensus 305 ~---~--~v~iwd~~~ 315 (447)
T 3dw8_B 305 Y---L--SVKVWDLNM 315 (447)
T ss_dssp S---S--EEEEEETTC
T ss_pred C---C--eEEEEeCCC
Confidence 2 3 677778765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-07 Score=108.51 Aligned_cols=355 Identities=8% Similarity=-0.047 Sum_probs=178.1
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.+.+.|+. ++.............+....|||+|+.++.... ...|.++++.++..........
T Consensus 820 ~v~~~d~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------dg~v~vwd~~~~~~~~~~~~h~--- 882 (1249)
T 3sfz_A 820 KVLLFDIH----TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----------QYCVELWNIDSRLKVADCRGHL--- 882 (1249)
T ss_dssp EEEEEETT----TCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----------SSCEEEEETTTTEEEEEECCCS---
T ss_pred cEEEEEec----CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeeecCCCc---
Confidence 56778887 444333322233346888999999998877643 2457777888876544332221
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCcc------cc-----------CCCCeeeec-----------Cccccc--cc
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT------MV-----------PLGPKIQSN-----------EQKNII--IS 135 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~------~~-----------~~g~~~~~~-----------~~g~~~--~~ 135 (595)
..+..+.|+|||+.|+....+..-...... .. +........ ..+... ..
T Consensus 883 -~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1249)
T 3sfz_A 883 -SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE 961 (1249)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC
T ss_pred -cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc
Confidence 146789999999988776433211100000 00 000000000 000000 00
Q ss_pred ccccccccCcCCccceE-EeecceEEEEcC-CCCe-eecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeE
Q 007620 136 RMTDNLLKDEYDESLFD-YYTTAQLVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKV 211 (595)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l 211 (595)
..+.. .....+...+. ......|.++++ +++. ..+. ....+..++|||||++|+....+ ..+
T Consensus 962 ~~i~~-~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i 1027 (1249)
T 3sfz_A 962 AQVSC-CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVI 1027 (1249)
T ss_dssp SCEEE-EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBE
T ss_pred CcEEE-EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEE
Confidence 00000 00001111111 112345666666 4433 2232 22345678999999988876532 368
Q ss_pred EEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc
Q 007620 212 QVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP 291 (595)
Q Consensus 212 ~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~ 291 (595)
.+||+.++....+.... .....+.|++++. ++.. .....+.+++. .++...
T Consensus 1028 ~vwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~--l~~~------------~~dg~v~vwd~--~~~~~~ 1078 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQAHQ-------------ETVKDFRLLQDSR--LLSW------------SFDGTVKVWNV--ITGRIE 1078 (1249)
T ss_dssp EEEETTTTEEECCBCCS-------------SCEEEEEECSSSE--EEEE------------ESSSEEEEEET--TTTCCC
T ss_pred EEEECCCCceEEEecCC-------------CcEEEEEEcCCCc--EEEE------------ECCCcEEEEEC--CCCcee
Confidence 89999887665443221 1123577888764 3222 12346777786 233233
Q ss_pred eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEE
Q 007620 292 EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIA 369 (595)
Q Consensus 292 ~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~ 369 (595)
..+......+..+.|+||+..++.... ++ .|.++|+.++. ....+.. ..+.. +.|++||+.++.
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~--d~--~v~iwd~~~~~-~~~~l~~h~~~v~~---------~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSA--DK--TAKIWSFDLLS-PLHELKGHNGCVRC---------SAFSLDGILLAT 1144 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECC--SS--CCCEECSSSSS-CSBCCCCCSSCEEE---------EEECSSSSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcC--CC--cEEEEECCCcc-eeeeeccCCCcEEE---------EEECCCCCEEEE
Confidence 344445566788999999987766532 23 45566776632 2222221 11222 789999998776
Q ss_pred EeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCC
Q 007620 370 KIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (595)
Q Consensus 370 ~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~ 449 (595)
...+ ....+| |+.+++.......... ..........-....|++|+..++.. .
T Consensus 1145 ~~~d---g~i~vw------------------d~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~dg~~l~s~-~--- 1197 (1249)
T 3sfz_A 1145 GDDN---GEIRIW------------------NVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSPDSKTLVSA-G--- 1197 (1249)
T ss_dssp EETT---SCCCEE------------------ESSSSCCCCCCCCCC---------CCSCCCEEEECTTSSCEEEE-S---
T ss_pred EeCC---CEEEEE------------------ECCCCceEEEeccccc--cccccccCceEEEEEECCCCCEEEEC-C---
Confidence 5432 233343 5555543222100000 00000000000124689999877543 2
Q ss_pred CcceEEEEeCCCCce
Q 007620 450 EITQYHILSWPLKKS 464 (595)
Q Consensus 450 ~p~~l~~~d~~~~~~ 464 (595)
+.+.+.++..++.
T Consensus 1198 --g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1198 --GYLKWWNVATGDS 1210 (1249)
T ss_dssp --SSEEEBCSSSCBC
T ss_pred --CeEEEEECCCCce
Confidence 5788999877654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-06 Score=86.16 Aligned_cols=199 Identities=11% Similarity=0.111 Sum_probs=107.7
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+...++|||||++|++.+... ...|.+||+.+++........ .....+.|+|||+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~-----------d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKV-----------PAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV 190 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCS-----------SCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE
T ss_pred CEEEEEEcCCCCEEEEEECCC-----------CCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce
Confidence 456789999999998876432 246889999876554322211 11356899999983
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
|+.. . .+.+.+++. .++....... .....+..+.|+|||..++...........++.+++..
T Consensus 191 -l~s~--s-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 191 -VAYI--T-----------GSSLEVIST--VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp -EEEE--C-----------SSCEEEEET--TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred -EEec--c-----------ceeEEEEEe--ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 3332 1 122333332 1332222222 22344678899999998766543323334566777655
Q ss_pred CCCCcEEE-----ee--cccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCc
Q 007620 334 KDVAPRVL-----FD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (595)
Q Consensus 334 ~~~~~~~l-----~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (595)
. ....+ .. ..+.. +.|+|||++|+....+ ...++ +|+.+++
T Consensus 255 ~--~~~~~~~~~~~~~~~~V~~---------~~~Spdg~~lasgs~D---~~V~i------------------wd~~~~~ 302 (365)
T 4h5i_A 255 G--NTSVLRSKQVTNRFKGITS---------MDVDMKGELAVLASND---NSIAL------------------VKLKDLS 302 (365)
T ss_dssp T--EEEEEEEEEEESSCSCEEE---------EEECTTSCEEEEEETT---SCEEE------------------EETTTTE
T ss_pred c--eecceeeeeecCCCCCeEe---------EEECCCCCceEEEcCC---CEEEE------------------EECCCCc
Confidence 2 22221 11 11222 7899999988766532 23334 4776665
Q ss_pred eeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 407 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
.......... ..+.. ..||||++.|+ +.+.. .-+.+.++.
T Consensus 303 ~~~~~~~gH~---~~V~~-------v~fSpdg~~la-S~S~D---~tvrvw~ip 342 (365)
T 4h5i_A 303 MSKIFKQAHS---FAITE-------VTISPDSTYVA-SVSAA---NTIHIIKLP 342 (365)
T ss_dssp EEEEETTSSS---SCEEE-------EEECTTSCEEE-EEETT---SEEEEEECC
T ss_pred EEEEecCccc---CCEEE-------EEECCCCCEEE-EEeCC---CeEEEEEcC
Confidence 4322111111 12222 47999998764 44332 236666664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=97.87 Aligned_cols=239 Identities=11% Similarity=0.141 Sum_probs=123.2
Q ss_pred cccceEEccCCCEEEEEEeccccc-ccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEED-NVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~-~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+...+|||||+.++++....... ........|.++++.+++.. .+..... ...+..+.|+||++.|+....+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV---DSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC---SSCEEEEEECSSSSCEEEEESS--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec---CCceEEEEECCCCCeEEEEccC--
Confidence 467899999998555655221000 00001245777788876522 2211111 1256789999999988775221
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C---C--CeeecCC-CCeeeeeEE
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D---G--TAKDFGT-PAVYTAVEP 182 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~---g--~~~~lt~-~~~~~~~~~ 182 (595)
..|.++++ . + ....+.. ...+..++|
T Consensus 89 -----------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 89 -----------------------------------------------GSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp -----------------------------------------------SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred -----------------------------------------------CeEEEeecccccccccchhhccCCccceEEEEE
Confidence 12333343 1 1 1222322 234568899
Q ss_pred CCC-CCeEEEEEcccCccccccCcccceeEEEEcCCCce------E-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 183 SPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL------V-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 183 SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~------~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
+|+ ++.|+.... ...|.+||+.++. . ..+... .........+.|+|++.
T Consensus 122 ~~~~~~~l~s~~~-------------dg~v~iwd~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~ 178 (416)
T 2pm9_A 122 NAKQDNVLASGGN-------------NGEIFIWDMNKCTESPSNYTPLTPGQS----------MSSVDEVISLAWNQSLA 178 (416)
T ss_dssp CSSSTTBEEEECS-------------SSCEEBCBTTTTSSCTTTCCCBCCCCS----------CCSSCCCCEEEECSSCT
T ss_pred cCCCCCEEEEEcC-------------CCeEEEEECCCCccccccccccccccc----------cCCCCCeeEEEeCCCCC
Confidence 999 666655542 2368899987654 1 111110 01112234688999954
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-cccc------CccccceeecCCCc-EEEEEEeecccceEE
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL------DLRFRSVSWCDDSL-ALVNETWYKTSQTRT 326 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~------~~~~~~~~wspDg~-~l~~~~~~~~~~~~L 326 (595)
..++.. .....+.++|+ ..++... +... ...+..+.|+|++. .++.... +.....|
T Consensus 179 ~~l~~~------------~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~~~~i 242 (416)
T 2pm9_A 179 HVFASA------------GSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG-SDNDPSI 242 (416)
T ss_dssp TEEEEE------------SSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC-CSSSCCC
T ss_pred cEEEEE------------cCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC-CCCCceE
Confidence 333322 12235677775 3223322 2222 34567899999974 5554431 1111146
Q ss_pred EEEeCCCCCCCcEEEee--c--ccccccCCCCCCCeeeCC-CCCEEEEEe
Q 007620 327 WLVCPGSKDVAPRVLFD--R--VFENVYSDPGSPMMTRTS-TGTNVIAKI 371 (595)
Q Consensus 327 ~~~d~~~~~~~~~~l~~--~--~~~~~~~~~~~~~~~~~~-dg~~l~~~~ 371 (595)
.++|+.++. .+...+. + .+.. +.|+| +++.++...
T Consensus 243 ~~~d~~~~~-~~~~~~~~~~~~~v~~---------~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 243 LIWDLRNAN-TPLQTLNQGHQKGILS---------LDWCHQDEHLLLSSG 282 (416)
T ss_dssp CEEETTSTT-SCSBCCCSCCSSCEEE---------EEECSSCSSCEEEEE
T ss_pred EEEeCCCCC-CCcEEeecCccCceeE---------EEeCCCCCCeEEEEe
Confidence 667877631 2221221 1 1222 78998 787766554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-07 Score=101.74 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=126.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
......|||||++||+... ..+.+.++.+++. ..++.... .+..+.|||||++|+-...+
T Consensus 20 ~~~~~~~spdg~~l~~~~~-----------~~v~l~~~~~~~~~~~~~~h~~-----~v~~~~~spdg~~lasg~~d--- 80 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNG-----------TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVH--- 80 (611)
T ss_dssp CCCCCEECTTSSEEEEEET-----------TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETT---
T ss_pred ceeEEeeCCCCCEEEeCCC-----------CEEEEecCCCcccCeEecCCCC-----ceEEEEECCCCcEEEEEeCC---
Confidence 4667889999999998651 3677778876654 44433333 56789999999988775221
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC--ee-ecC-CCCeeeeeEECCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AK-DFG-TPAVYTAVEPSPD 185 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~--~~-~lt-~~~~~~~~~~SpD 185 (595)
..|.++|+ +++ .. .+. ....+..++||||
T Consensus 81 ----------------------------------------------~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 81 ----------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp ----------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCEEEeECCCCcceeeEeecccCCceEEEEECCC
Confidence 12333344 221 11 121 2234568999999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+.|+....... ....+++||... ....+. +.......+.|+|++...|+.. .
T Consensus 115 g~~l~~~~~~~~---------~~~~v~~wd~~~-~~~~l~-------------gh~~~v~~v~f~p~~~~~l~s~--s-- 167 (611)
T 1nr0_A 115 SKRIAAVGEGRE---------RFGHVFLFDTGT-SNGNLT-------------GQARAMNSVDFKPSRPFRIISG--S-- 167 (611)
T ss_dssp SCEEEEEECCSS---------CSEEEEETTTCC-BCBCCC-------------CCSSCEEEEEECSSSSCEEEEE--E--
T ss_pred CCEEEEEECCCC---------ceeEEEEeeCCC-Ccceec-------------CCCCCceEEEECCCCCeEEEEE--e--
Confidence 999988764321 023677777422 212221 1112234678999987434322 1
Q ss_pred CCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe-e
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-D 343 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~-~ 343 (595)
....+.+++. ..++. ..+......+..+.|+|||..|+... .++ .|.++|+.++ +....+ .
T Consensus 168 --------~D~~v~lwd~---~~~~~~~~l~~H~~~V~~v~fspdg~~las~s--~D~--~i~lwd~~~g--~~~~~~~~ 230 (611)
T 1nr0_A 168 --------DDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG--GDG--TIVLYNGVDG--TKTGVFED 230 (611)
T ss_dssp --------TTSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTTC--CEEEECBC
T ss_pred --------CCCeEEEEEC---CCCeEeeeeccccCceEEEEECCCCCEEEEEE--CCC--cEEEEECCCC--cEeeeecc
Confidence 1234566664 21222 22333445577899999999877654 234 4555676663 222222 1
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
......--......+.|+|||+.|+...
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEe
Confidence 0000000000001278999999876554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-07 Score=93.82 Aligned_cols=228 Identities=9% Similarity=0.077 Sum_probs=125.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...+||||+ +|+..+ . + ..|.++|+.+++...............+..+.|+|||++|+....+
T Consensus 84 ~v~~~~~s~d~-~l~~~s-~-------d--g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---- 148 (344)
T 4gqb_B 84 GVADLTWVGER-GILVAS-D-------S--GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---- 148 (344)
T ss_dssp CEEEEEEETTT-EEEEEE-T-------T--SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEeCCC-eEEEEE-C-------C--CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 37788999997 455333 1 2 3466668877764332211000011246789999999988775211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC-CCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~~ 188 (595)
..|.++|+ +++. ..+. ....+..+.|+|++..
T Consensus 149 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 149 ---------------------------------------------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 12444555 4432 2332 2335568899999987
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
++++...+ ..|.+||+.+++. ..+.... . ......+.|+|++...++..
T Consensus 184 ~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~-~----------~~~~~~~~~~p~~~~~l~sg------- 233 (344)
T 4gqb_B 184 VFLSCSED------------NRILLWDTRCPKPASQIGCSA-P----------GYLPTSLAWHPQQSEVFVFG------- 233 (344)
T ss_dssp EEEEEETT------------SCEEEEETTSSSCEEECC---------------CCCEEEEEECSSCTTEEEEE-------
T ss_pred ceeeeccc------------cccccccccccceeeeeecce-e----------eccceeeeecCCCCcceEEe-------
Confidence 76665432 3688999875543 3332110 0 00123577888765433221
Q ss_pred cccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcE-EEEEEeecccceEEEEEeCCCCCCCcEEEee--c
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--R 344 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~ 344 (595)
.....+.++|+ .++.....+......+..+.|+|||.. |+... .++ .|.++|+.++ +...+.. .
T Consensus 234 -----~~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~--~i~vwd~~~~--~~~~~~~H~~ 300 (344)
T 4gqb_B 234 -----DENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDC--SLAVLDSSLS--ELFRSQAHRD 300 (344)
T ss_dssp -----ETTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTS--CEEEECTTCC--EEEEECCCSS
T ss_pred -----ccCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCC--eEEEEECCCC--cEEEEcCCCC
Confidence 11235777786 233233344444556778999999864 55543 223 4666688773 2222222 1
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 345 VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+.. +.|+|+|+.++++.
T Consensus 301 ~V~~---------v~~sp~~~~llas~ 318 (344)
T 4gqb_B 301 FVRD---------ATWSPLNHSLLTTV 318 (344)
T ss_dssp CEEE---------EEECSSSTTEEEEE
T ss_pred CEEE---------EEEeCCCCeEEEEE
Confidence 2333 78999998766554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-07 Score=95.93 Aligned_cols=224 Identities=10% Similarity=0.043 Sum_probs=128.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC----c-eEecccCCCcccccc-ccceEEec--CCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----E-AKPLFESPDICLNAV-FGSFVWVN--NSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----~-~~~lt~~~~~~~~~~-~~~~~Wsp--dg~~l~~ 103 (595)
.+....|||||++||+... ..|.+++++++ + ...+..... . +..+.|+| |++.|+.
T Consensus 20 ~v~~~~~spdg~~l~~~~~-----------~~v~v~~~~~~~~~~~~~~~~~~h~~-----~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCG-----------KSAFVRCLDDGDSKVPPVVQFTGHGS-----SVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCCEEETTTTEEEEEET-----------TEEEEEECCSSCCSSCSEEEECTTTT-----SCEEEEEECSSTTCCEEEE
T ss_pred ceeEEEECCCCCEEEEecC-----------CeEEEEECCCCCCccccceEEecCCC-----ceEEEEEECcCCCCCEEEE
Confidence 5788999999999999751 36777788877 4 444433332 5 77899999 9998887
Q ss_pred EecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC------C---eeecC-
Q 007620 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG------T---AKDFG- 172 (595)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g------~---~~~lt- 172 (595)
...+ | .|.++++ ++ + ...+.
T Consensus 84 ~~~d----------------------g---------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~ 114 (615)
T 1pgu_A 84 GDES----------------------G---------------------------KVIVWGWTFDKESNSVEVNVKSEFQV 114 (615)
T ss_dssp EETT----------------------S---------------------------EEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred ecCC----------------------C---------------------------EEEEEeCCCCcccccccccccchhhc
Confidence 5321 1 1222222 11 0 11111
Q ss_pred CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecC
Q 007620 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (595)
Q Consensus 173 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (595)
....+..++|+|||++|+........ ...+++|| .+.....+.... .....+.|+|+
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~---------~~~v~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~ 171 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDN---------FGVFISWD-SGNSLGEVSGHS-------------QRINACHLKQS 171 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSC---------SEEEEETT-TCCEEEECCSCS-------------SCEEEEEECSS
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCC---------ccEEEEEE-CCCcceeeecCC-------------ccEEEEEECCC
Confidence 22345688999999999988754321 24678888 333444432211 11345789999
Q ss_pred CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCc---cccceeecCC-CcEEEEEEeecccceEEE
Q 007620 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDL---RFRSVSWCDD-SLALVNETWYKTSQTRTW 327 (595)
Q Consensus 253 g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~---~~~~~~wspD-g~~l~~~~~~~~~~~~L~ 327 (595)
++..++.. .....+.+++. ..++.. .+..... .+..+.|+|| +..++.... ++ .|.
T Consensus 172 ~~~~l~~~------------~~d~~v~vwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg--~i~ 232 (615)
T 1pgu_A 172 RPMRSMTV------------GDDGSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DR--KIS 232 (615)
T ss_dssp SSCEEEEE------------ETTTEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TC--CEE
T ss_pred CCcEEEEE------------eCCCcEEEEeC---CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--CC--eEE
Confidence 87434332 12245677775 222222 2333334 5778999999 887776532 23 577
Q ss_pred EEeCCCCCCCcEEEe-e---cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 328 LVCPGSKDVAPRVLF-D---RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 328 ~~d~~~~~~~~~~l~-~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++|+.++ +....+ . ... ..+ ..+.|+ +++.++...
T Consensus 233 vwd~~~~--~~~~~~~~~~~~~~-~~v-----~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 233 CFDGKSG--EFLKYIEDDQEPVQ-GGI-----FALSWL-DSQKFATVG 271 (615)
T ss_dssp EEETTTC--CEEEECCBTTBCCC-SCE-----EEEEES-SSSEEEEEE
T ss_pred EEECCCC--CEeEEecccccccC-Cce-----EEEEEc-CCCEEEEEc
Confidence 7788773 322222 1 110 000 126788 888776654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-07 Score=92.91 Aligned_cols=256 Identities=11% Similarity=0.121 Sum_probs=133.7
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC----C-ceEeccc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----G-EAKPLFE 79 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~----g-~~~~lt~ 79 (595)
.|.|+|+. +++. +.+..+.....+....|||||+.||.... + ..|.++++.+ . ....+..
T Consensus 46 ~v~iw~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------d--g~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 46 SLELWSLL----AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD--------N--GSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp CCEEEESS----SGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES--------S--SCEEEECCSSTTSCCCEEEECCC
T ss_pred eEEEEEcc----CCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc--------C--CeEEEeecccccccccchhhccC
Confidence 48889987 4432 22322333446889999999999887653 2 3456667765 2 2333432
Q ss_pred CCCccccccccceEEecC-CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecce
Q 007620 80 SPDICLNAVFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspd-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (595)
... .+..+.|+|+ ++.|+....+ ..
T Consensus 112 h~~-----~v~~~~~~~~~~~~l~s~~~d-------------------------------------------------g~ 137 (416)
T 2pm9_A 112 HSS-----SVKTVKFNAKQDNVLASGGNN-------------------------------------------------GE 137 (416)
T ss_dssp SSS-----CCCEEEECSSSTTBEEEECSS-------------------------------------------------SC
T ss_pred Ccc-----ceEEEEEcCCCCCEEEEEcCC-------------------------------------------------Ce
Confidence 222 5678999998 6666554211 12
Q ss_pred EEEEcC-CCC-------eeec----CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEecc
Q 007620 159 LVLGSL-DGT-------AKDF----GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (595)
Q Consensus 159 l~~~d~-~g~-------~~~l----t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~ 226 (595)
|.++|+ +++ ...+ ........++|+|++..++++... ...+.+||+.+++......
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS------------SNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS------------SSCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC------------CCCEEEEECCCCCcceEEe
Confidence 223333 111 1111 112234578999995544445432 2368999998665433222
Q ss_pred CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecc-ccCccccce
Q 007620 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-KLDLRFRSV 304 (595)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~-~~~~~~~~~ 304 (595)
..... .+.......+.|+|++...++.. ..++. ...+.++|+ ..+.... .+. .....+..+
T Consensus 206 ~~~~~------~~~~~~v~~~~~~~~~~~~l~~~-~~d~~--------~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 206 YTSPN------SGIKQQLSVVEWHPKNSTRVATA-TGSDN--------DPSILIWDL--RNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp CCCCS------SCCCCCEEEEEECSSCTTEEEEE-ECCSS--------SCCCCEEET--TSTTSCSBCCCSCCSSCEEEE
T ss_pred ccccc------cccCCceEEEEECCCCCCEEEEE-ECCCC--------CceEEEEeC--CCCCCCcEEeecCccCceeEE
Confidence 11000 00001134688999986434332 11110 014555665 1221222 233 344567789
Q ss_pred eecC-CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCC-CEEEEE
Q 007620 305 SWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAK 370 (595)
Q Consensus 305 ~wsp-Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~ 370 (595)
.|+| ++..|+.... ++ .|.++|+.++ +....+..... .+ ..+.|+|+| +.++..
T Consensus 269 ~~s~~~~~~l~s~~~--dg--~v~~wd~~~~--~~~~~~~~~~~-~v-----~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGR--DN--TVLLWNPESA--EQLSQFPARGN-WC-----FKTKFAPEAPDLFACA 324 (416)
T ss_dssp EECSSCSSCEEEEES--SS--EEEEECSSSC--CEEEEEECSSS-CC-----CCEEECTTCTTEEEEC
T ss_pred EeCCCCCCeEEEEeC--CC--CEEEeeCCCC--ccceeecCCCC-ce-----EEEEECCCCCCEEEEE
Confidence 9999 7877766542 23 6777888773 32222221110 01 128999999 555443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-06 Score=85.83 Aligned_cols=198 Identities=15% Similarity=0.218 Sum_probs=108.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE--ecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~--~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
.+...+|||||+.||.... ++.-.|| ++.+++.. .+..... ...+..+.|+|||+.|+....+
T Consensus 18 ~v~~l~~sp~g~~las~~~--------D~~i~iw--~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~g~~l~s~s~D-- 82 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG--------DRRIRIW--GTEGDSWICKSVLSEGH---QRTVRKVAWSPCGNYLASASFD-- 82 (345)
T ss_dssp CEEEEEECTTSSCEEEEET--------TSCEEEE--EEETTEEEEEEEECSSC---SSCEEEEEECTTSSEEEEEETT--
T ss_pred cEEEEEECCCCCEEEEEcC--------CCeEEEE--EcCCCcceeeeeecccc---CCcEEEEEECCCCCEEEEEECC--
Confidence 4668899999999887653 3344455 66666422 1111111 1246789999999988775321
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC---eeecC-CCCeeeeeEECCC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT---AKDFG-TPAVYTAVEPSPD 185 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~lt-~~~~~~~~~~SpD 185 (595)
+ ...||.++ .++ ...+. ....+..++|+||
T Consensus 83 --------------------~-------------------------~v~iw~~~-~~~~~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 83 --------------------A-------------------------TTCIWKKN-QDDFECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp --------------------S-------------------------CEEEEEEC-CC-EEEEEEECCCSSCEEEEEECTT
T ss_pred --------------------C-------------------------cEEEEEcc-CCCeEEEEEccCCCCCceEEEEeCC
Confidence 1 01122221 111 11222 2234568999999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
|++|+..+.+ ..+.+||+..+. ...+.... +.......+.|+|+++. |+.. .
T Consensus 117 ~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~-l~s~--s- 169 (345)
T 3fm0_A 117 GNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLN----------SHTQDVKHVVWHPSQEL-LASA--S- 169 (345)
T ss_dssp SSEEEEEETT-------------SCEEEEEECTTSCEEEEEEEC----------CCCSCEEEEEECSSSSC-EEEE--E-
T ss_pred CCEEEEEECC-------------CeEEEEECCCCCCeEEEEEec----------CcCCCeEEEEECCCCCE-EEEE--e-
Confidence 9998877643 368888876442 22221111 00111345789999873 3322 1
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCce---eccccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
....+.+++. ..++.. .+......+..+.|+|||..|+... .++..+||....
T Consensus 170 ---------~d~~i~~w~~---~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s--~D~~v~iW~~~~ 225 (345)
T 3fm0_A 170 ---------YDDTVKLYRE---EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS--DDRTVRIWRQYL 225 (345)
T ss_dssp ---------TTSCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEEEC
T ss_pred ---------CCCcEEEEEe---cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe--CCCeEEEecccc
Confidence 1224555554 222222 2333345577899999999887654 345567776543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.84 E-value=7.7e-06 Score=81.90 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=121.5
Q ss_pred cccceEE-----cc-CCCEEEEEEecccccccCCCceEEEEEECCCCc-------e-EecccCCCccccccccceEEecC
Q 007620 32 KINFVSW-----SP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 32 ~~~~~~~-----SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
.+....| +| ||+.||-.+. ++.-.|| ++..++ + ..+..... .+..+.|+|+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~--------D~~v~iW--d~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSR--------DKTVMIW--KLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEET--------TSCEEEE--EECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcC--------CCEEEEE--ECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 4677888 77 8987765442 3445555 554322 1 22222222 4678999999
Q ss_pred CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CC
Q 007620 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TP 174 (595)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~ 174 (595)
++.|+....+ ..|.++|+ +++ ...+. ..
T Consensus 88 ~~~l~s~s~D-------------------------------------------------~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSSWD-------------------------------------------------KTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEETT-------------------------------------------------SEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEcCC-------------------------------------------------CcEEEEECCCCcEEEEEcCCC
Confidence 9987654211 23444555 443 22332 23
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
..+..++|||||++|+....+ ..+.+||+.+.....+...... ......+.|+|++.
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECKFSSAEKENH----------SDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEEEECCTTTSC----------SSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCceeeeecccCC----------Cceeeeeeeccccc
Confidence 356689999999998877542 3688999876554443221110 01123466777763
Q ss_pred e---------eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceE
Q 007620 255 S---------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (595)
Q Consensus 255 ~---------~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (595)
. .++.. .....+.+++. .+.....+......+..+.|+|||..|+... .++ .
T Consensus 176 ~~~~~~~~~~~l~s~------------~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs--~dg--~ 236 (343)
T 2xzm_R 176 SANKVQPFAPYFASV------------GWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGG--KDK--K 236 (343)
T ss_dssp SCSCCCSSCCEEEEE------------ETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTC--E
T ss_pred cccccCCCCCEEEEE------------cCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEc--CCC--e
Confidence 1 12111 11235666664 3212222333445677899999999887754 223 5
Q ss_pred EEEEeCCCCCCCcEEE-eecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 326 TWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 326 L~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
|.++|+.........+ ....+.. +.|+|+++.+...
T Consensus 237 v~iwd~~~~~~~~~~~~~~~~v~~---------v~~sp~~~~la~~ 273 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDAGSTINQ---------IAFNPKLQWVAVG 273 (343)
T ss_dssp EEEEESSCCSSCSEEEECSSCEEE---------EEECSSSCEEEEE
T ss_pred EEEEECCCCcccceeecCCCcEEE---------EEECCCCCEEEEE
Confidence 6667774321122222 1222333 7899999876543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-07 Score=91.84 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=122.6
Q ss_pred eeEEEecCCCCCCCCceeeec---CCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHG---YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~---~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.|.|+|+. +++...... ......+....|||||++||-.+. + ..|.++|+.+++..+......
T Consensus 104 ~v~lWd~~----~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~--------d--~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 104 AVELWELD----ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK--------D--ICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp EEEEEEEC----TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET--------T--SCEEEEETTTTEEEEEECCCS
T ss_pred EEEEEecc----CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC--------C--CeEEEEECCCCcEEEEEcCcC
Confidence 36788887 454322211 112235888999999998876543 2 456666998887654432211
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
..+..+.|+|+++.++.+... ...|.++
T Consensus 170 ----~~V~~~~~~~~~~~~l~s~s~------------------------------------------------D~~v~iw 197 (344)
T 4gqb_B 170 ----AQVTCVAASPHKDSVFLSCSE------------------------------------------------DNRILLW 197 (344)
T ss_dssp ----SCEEEEEECSSCTTEEEEEET------------------------------------------------TSCEEEE
T ss_pred ----CceEEEEecCCCCCceeeecc------------------------------------------------ccccccc
Confidence 146789999999765543210 1234455
Q ss_pred cC-CCC-eeecCC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCcc
Q 007620 163 SL-DGT-AKDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVC 236 (595)
Q Consensus 163 d~-~g~-~~~lt~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~ 236 (595)
|+ +++ ...+.. ......++|+|++..++++... ...|.+||+.+++ ...+...
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~------------dg~v~~wd~~~~~~~~~~~~h--------- 256 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE------------NGTVSLVDTKSTSCVLSSAVH--------- 256 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET------------TSEEEEEESCC--CCEEEECC---------
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEecc------------CCcEEEEECCCCcEEEEEcCC---------
Confidence 66 443 333422 1234578999987666555432 2368899987554 3333321
Q ss_pred ccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEE
Q 007620 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 237 ~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
......+.|+|||...|+-. .....+.+||. ..++...+......+..+.|+||+..++..
T Consensus 257 ----~~~v~~v~fsp~g~~~lasg------------s~D~~i~vwd~---~~~~~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 257 ----SQCVTGLVFSPHSVPFLASL------------SEDCSLAVLDS---SLSELFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp ----SSCEEEEEECSSSSCCEEEE------------ETTSCEEEECT---TCCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ----CCCEEEEEEccCCCeEEEEE------------eCCCeEEEEEC---CCCcEEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence 11234678999986434322 11235777886 444544444445567889999998754433
Q ss_pred EeecccceEEEEE
Q 007620 317 TWYKTSQTRTWLV 329 (595)
Q Consensus 317 ~~~~~~~~~L~~~ 329 (595)
.. .++...+|.+
T Consensus 318 ~s-~D~~v~~w~v 329 (344)
T 4gqb_B 318 VG-WDHQVVHHVV 329 (344)
T ss_dssp EE-TTSCEEEEEC
T ss_pred Ec-CCCeEEEEEC
Confidence 21 2344445544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-06 Score=82.23 Aligned_cols=223 Identities=9% Similarity=0.077 Sum_probs=124.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||+.||-.+. + ..|.++|+.+++......... ..+..+.|+|+|+.|+....+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~--------D--g~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~d---- 118 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQ--------D--GKLIIWDSYTTNKVHAIPLRS----SWVMTCAYAPSGNYVACGGLD---- 118 (340)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--TEEEEEETTTCCEEEEEECSS----SCEEEEEECTTSSEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEeC--------C--CcEEEEECCCCCcceEeecCC----ccEEEEEECCCCCEEEEEeCC----
Confidence 5888999999998766542 2 456666888776443322221 146688999999988775221
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC--Ce---eecC-CCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TA---KDFG-TPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g--~~---~~lt-~~~~~~~~~~Sp 184 (595)
..+.++++ ++ .. +.+. .......+.|+|
T Consensus 119 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 119 ---------------------------------------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ---------------------------------------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred ---------------------------------------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 11222233 11 11 1121 223455778898
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (595)
+++ |+..+. ...+.+||+.+++. ..+.... .....+.|+|+++. ++..
T Consensus 154 ~~~-l~s~s~-------------d~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~sg--- 202 (340)
T 1got_B 154 DNQ-IVTSSG-------------DTTCALWDIETGQQTTTFTGHT-------------GDVMSLSLAPDTRL-FVSG--- 202 (340)
T ss_dssp TTE-EEEEET-------------TSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSE-EEEE---
T ss_pred CCc-EEEEEC-------------CCcEEEEECCCCcEEEEEcCCC-------------CceEEEEECCCCCE-EEEE---
Confidence 886 444432 23688999886654 3332211 11346789999873 2221
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.....+.+||. ..+... .+......+..+.|+|++..|+... .++ .|.++|+.++ .....+
T Consensus 203 ---------~~d~~v~~wd~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~d~--~v~iwd~~~~--~~~~~~ 264 (340)
T 1got_B 203 ---------ACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGS--DDA--TCRLFDLRAD--QELMTY 264 (340)
T ss_dssp ---------ETTSCEEEEET---TTCSEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTTT--EEEEEE
T ss_pred ---------eCCCcEEEEEC---CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc--CCC--cEEEEECCCC--cEEEEE
Confidence 11235667775 323332 3334455677899999999877654 233 4666687663 222222
Q ss_pred ecc-cccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 343 DRV-FENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 343 ~~~-~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
... ... +...+.|+|+|+.++...
T Consensus 265 ~~~~~~~-----~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 265 SHDNIIC-----GITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp CCTTCCS-----CEEEEEECTTSSEEEEEE
T ss_pred ccCCccc-----ceEEEEECCCCCEEEEEC
Confidence 111 000 001278999999877654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=94.46 Aligned_cols=228 Identities=8% Similarity=0.079 Sum_probs=117.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...+||||++.|+ .+ . ++ .|.++|+.+++...+...........+..+.|+|||+.|+....+
T Consensus 96 ~V~~~~~s~d~~~l~-~s-~-------dg--~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---- 160 (357)
T 4g56_B 96 GVTDVAWVSEKGILV-AS-D-------SG--AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---- 160 (357)
T ss_dssp CEEEEEEETTTEEEE-EE-T-------TS--CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEE-EE-C-------CC--EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 478899999996543 22 1 23 455668777764333211100011246789999999988765211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecCC-CCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt~-~~~~~~~~~SpDg~~ 188 (595)
..|.++|+ +++. ..+.. ...+..++|+|+++.
T Consensus 161 ---------------------------------------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 161 ---------------------------------------------FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 12444555 3432 23322 234567899999986
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
++++.... ..|.+||+.+++.......... ......+.|+|++...|+..
T Consensus 196 ~~~s~~~d------------g~v~~wd~~~~~~~~~~~~~~~----------~~~v~~v~~sp~~~~~la~g-------- 245 (357)
T 4g56_B 196 IFLSCGED------------GRILLWDTRKPKPATRIDFCAS----------DTIPTSVTWHPEKDDTFACG-------- 245 (357)
T ss_dssp CEEEEETT------------SCEEECCTTSSSCBCBCCCTTC----------CSCEEEEEECTTSTTEEEEE--------
T ss_pred eeeeeccC------------CceEEEECCCCceeeeeeeccc----------cccccchhhhhcccceEEEe--------
Confidence 65554322 3688899876543221111000 01123578899876433321
Q ss_pred ccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcE-EEEEEeecccceEEEEEeCCCCCCCcEEEeec--
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-- 344 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~-- 344 (595)
.....+.++|+ ..++. +.+......+..+.|+||+.. |+... .++ .|.++|+.++ +......+
T Consensus 246 ----~~d~~i~~wd~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs--~D~--~i~iwd~~~~--~~~~~~~H~~ 312 (357)
T 4g56_B 246 ----DETGNVSLVNI---KNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS--EDC--TVAVLDADFS--EVFRDLSHRD 312 (357)
T ss_dssp ----ESSSCEEEEES---SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE--TTS--CEEEECTTSC--EEEEECCCSS
T ss_pred ----ecccceeEEEC---CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe--CCC--EEEEEECCCC--cEeEECCCCC
Confidence 11235667775 32232 334344456778999999854 55443 223 4666788773 22222221
Q ss_pred ccccccCCCCCCCeeeCC-CCCEEEEEe
Q 007620 345 VFENVYSDPGSPMMTRTS-TGTNVIAKI 371 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-dg~~l~~~~ 371 (595)
.+.. +.|+| |++.|+...
T Consensus 313 ~V~~---------vafsP~d~~~l~s~s 331 (357)
T 4g56_B 313 FVTG---------VAWSPLDHSKFTTVG 331 (357)
T ss_dssp CEEE---------EEECSSSTTEEEEEE
T ss_pred CEEE---------EEEeCCCCCEEEEEc
Confidence 2332 78998 787765443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-06 Score=85.60 Aligned_cols=190 Identities=7% Similarity=0.010 Sum_probs=110.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc----eEecccCCCccccccccceEEecCCc-EEEEEec
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESPDICLNAVFGSFVWVNNST-LLIFTIP 106 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~~~~~~~~~~~~~~Wspdg~-~l~~~~~ 106 (595)
.+...+|||||+.|+.... ...|.++++.+++ .+.+..... .+..+.|+|+++ .|+....
T Consensus 13 ~v~~~~~s~~~~~l~~~~~----------d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSW----------DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET----------TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEcC----------CCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcC
Confidence 5888999999998877653 2456666776666 444443332 567899999999 7777521
Q ss_pred CCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC-CeeecCC---CCeeeeeE
Q 007620 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT---PAVYTAVE 181 (595)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g-~~~~lt~---~~~~~~~~ 181 (595)
...|.++++ .+ +...+.. ...+..+.
T Consensus 78 -------------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 78 -------------------------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp -------------------------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred -------------------------------------------------CCeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 123555565 43 4444433 33556889
Q ss_pred ECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC---------ceEEEeccCCCCccCCccccccccCCCCceeecC
Q 007620 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG---------KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (595)
Q Consensus 182 ~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (595)
|+| ++.|+....+ ..+.+||+.+ ++. +.... .......+.|+++
T Consensus 109 ~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~--~~~~~-----------~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLN--SNNTK-----------VKNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESC--SSSSS-----------SCCCEEEEEECSS
T ss_pred eCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCe--eeEEe-----------eCCceEEEEecCC
Confidence 999 8888776542 3688888753 221 11111 0011235677776
Q ss_pred CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCC-CCc-e-e-ccccCccccceeecC-CCcEEEEEEeecccceEEE
Q 007620 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKP-E-I-LHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 253 g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g-~~~-~-~-l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~L~ 327 (595)
+ ++.. .....+.++++ .. +.. . . .......+..+.|+| ++..++... .++...||
T Consensus 162 ~---l~~~------------~~d~~i~i~d~---~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~ 221 (342)
T 1yfq_A 162 R---LIVG------------MNNSQVQWFRL---PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVE 221 (342)
T ss_dssp E---EEEE------------ESTTEEEEEES---SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEE
T ss_pred c---EEEE------------eCCCeEEEEEC---CccccccceeeecCCCCceeEEEECCCCCCEEEEEe--cCCcEEEE
Confidence 4 3222 12236777776 32 221 1 1 122344567889999 998777654 23544555
Q ss_pred EEeCC
Q 007620 328 LVCPG 332 (595)
Q Consensus 328 ~~d~~ 332 (595)
.++..
T Consensus 222 ~~~~~ 226 (342)
T 1yfq_A 222 FFDDQ 226 (342)
T ss_dssp ECCTT
T ss_pred EEcCC
Confidence 55544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-07 Score=96.01 Aligned_cols=140 Identities=8% Similarity=0.104 Sum_probs=79.1
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce--------EEEeccCCCCccCCccccccccCCCCce
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--------VRELCDLPPAEDIPVCYNSVREGMRSIS 248 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (595)
+..++|||||++|+....+ ..|.+||+.++. ...+.... .++...+..++
T Consensus 132 v~svafSPDG~~LAsgs~D-------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~gh~~~V~sVa 189 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNED-------------GELQFFSIRKNSENTPEFYFESSIRLSD---------AGSKDWVTHIV 189 (588)
T ss_dssp EEEEEECSSSSCEEEEETT-------------SEEEEEECCCCTTTCCCCEEEEEEECSC---------TTCCCCEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCccccccceeeeeeeccc---------ccccccEEEEE
Confidence 6689999999999988642 378899988764 23332111 00111134689
Q ss_pred eecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce----ecc-ccCccccceeecCCCcEEEEEEeecccc
Q 007620 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE----ILH-KLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 249 wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~----~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
|+||| ++.. .....+++|++ .+++.. .+. .....+..+.|+ |..++... .+
T Consensus 190 wSPdg---Laas------------s~D~tVrlWd~---~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~- 245 (588)
T 2j04_A 190 WYEDV---LVAA------------LSNNSVFSMTV---SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PG- 245 (588)
T ss_dssp EETTE---EEEE------------ETTCCEEEECC---CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SS-
T ss_pred EcCCc---EEEE------------eCCCeEEEEEC---CCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CC-
Confidence 99997 3222 11235677776 443432 232 233567889999 45565543 13
Q ss_pred eEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeee--CCCCCEEEEEe
Q 007620 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR--TSTGTNVIAKI 371 (595)
Q Consensus 324 ~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~dg~~l~~~~ 371 (595)
.|.++|+.++ ....+.-... +.+.+ +.+ ++||+.++...
T Consensus 246 -tIkLWd~~~~--~~~~~~~gh~-~~V~~-----va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 246 -YVHKIDLKNY--SISSLKTGSL-ENFHI-----IPLNHEKESTILLMSN 286 (588)
T ss_dssp -EEEEEETTTT--EEEEEECSCC-SCCCE-----EEETTCSSCEEEEECS
T ss_pred -eEEEEECCCC--eEEEEEcCCC-ceEEE-----EEeeeCCCCCEEEEEc
Confidence 6777888773 3222221111 11111 678 89987665544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-06 Score=83.72 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=132.4
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-----Eeccc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFE 79 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~ 79 (595)
.|.|+|+. +++. ..+.. ....+....|||||+.||.... ...+.++++.+++. +.+..
T Consensus 78 ~v~iWd~~----~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~----------d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 78 KLIIWDSY----TTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGL----------DNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EEEEEETT----TCCEEEEEEC--SSSCEEEEEECTTSSEEEEEET----------TCEEEEEETTTCSBSCEEEEEEEC
T ss_pred cEEEEECC----CCCcceEeec--CCccEEEEEECCCCCEEEEEeC----------CCeEEEEECccCCCcceeEEEecC
Confidence 36677776 4433 33332 2235778899999998876543 24566667766431 12222
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
... .+..+.|+++++ |+.... ...|
T Consensus 142 h~~-----~v~~~~~~~~~~-l~s~s~-------------------------------------------------d~~i 166 (340)
T 1got_B 142 HTG-----YLSCCRFLDDNQ-IVTSSG-------------------------------------------------DTTC 166 (340)
T ss_dssp CSS-----CEEEEEEEETTE-EEEEET-------------------------------------------------TSCE
T ss_pred CCc-----cEEEEEECCCCc-EEEEEC-------------------------------------------------CCcE
Confidence 121 456788998887 333211 1234
Q ss_pred EEEcC-CCC-eeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCc
Q 007620 160 VLGSL-DGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPV 235 (595)
Q Consensus 160 ~~~d~-~g~-~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~ 235 (595)
.++|+ +++ ...+. ....+..++|+||++.|+....+ ..+.+||+.++.. ..+....
T Consensus 167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~~~h~------- 226 (340)
T 1got_B 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGHE------- 226 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCSEEEEECCCS-------
T ss_pred EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC-------------CcEEEEECCCCeeEEEEcCCc-------
Confidence 44555 343 22332 22345689999999987766532 3688999875543 3332211
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-cccc--CccccceeecCCCcE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL--DLRFRSVSWCDDSLA 312 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~--~~~~~~~~wspDg~~ 312 (595)
.....+.|+|++.. ++.. .....+.++|. ..++... +... ...+..+.|+|||..
T Consensus 227 ------~~v~~v~~~p~~~~-l~s~------------s~d~~v~iwd~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 227 ------SDINAICFFPNGNA-FATG------------SDDATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp ------SCEEEEEECTTSSE-EEEE------------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred ------CCEEEEEEcCCCCE-EEEE------------cCCCcEEEEEC---CCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 11345789999873 3222 11235666775 3222221 2111 124567899999998
Q ss_pred EEEEEeecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++... .++ .|.++|+.+++ ....+..+ .+.. +.|+++|+.|+...
T Consensus 285 l~~g~--~d~--~i~vwd~~~~~-~~~~~~~h~~~v~~---------~~~s~dg~~l~s~s 331 (340)
T 1got_B 285 LLAGY--DDF--NCNVWDALKAD-RAGVLAGHDNRVSC---------LGVTDDGMAVATGS 331 (340)
T ss_dssp EEEEE--TTS--EEEEEETTTCC-EEEEEECCSSCEEE---------EEECTTSSCEEEEE
T ss_pred EEEEC--CCC--eEEEEEcccCc-EeeEeecCCCcEEE---------EEEcCCCCEEEEEc
Confidence 77654 223 57777876631 22223222 2222 78999998776554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-06 Score=83.02 Aligned_cols=225 Identities=10% Similarity=0.096 Sum_probs=122.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC---c-eEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG---E-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g---~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
.+....|+|++..++++... ++.-.||-+..... . .+.+..... .+..+.|+|||+.|+....+
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~-------D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASR-------DKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp CEEEEEECSSCTTEEEEEET-------TSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCccEEEEecC-------CccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEeCC
Confidence 47788999987555555543 34455554432111 1 122222222 46688999999987765211
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCeeeeeEECC
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEPSP 184 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~~~~~~~Sp 184 (595)
..|.++|+ +++ .+.+. ....+..++|+|
T Consensus 87 -------------------------------------------------~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 87 -------------------------------------------------KTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp -------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred -------------------------------------------------CEEEEEECCCCCeeEEEccCCCcEEEEEEcC
Confidence 23444555 443 22332 233456889999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe---eEEEEE
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS---TLYWVE 261 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~---~l~~~~ 261 (595)
+++.|+..+.+ ..+.+||+.+.....+.... .....+.|+|.+.. ...++.
T Consensus 118 ~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~l~s 171 (319)
T 3frx_A 118 KASMIISGSRD-------------KTIKVWTIKGQCLATLLGHN-------------DWVSQVRVVPNEKADDDSVTIIS 171 (319)
T ss_dssp TSCEEEEEETT-------------SCEEEEETTSCEEEEECCCS-------------SCEEEEEECCC------CCEEEE
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCeEEEEeccC-------------CcEEEEEEccCCCCCCCccEEEE
Confidence 99988877642 36888999877665553221 11223555554321 011111
Q ss_pred eecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 262 ~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
. .....+.++++ ..++.. .+......+..+.|+|||..|+... .++ .|.++|+.++ +...
T Consensus 172 ~----------~~d~~i~~wd~---~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg--~i~iwd~~~~--~~~~ 232 (319)
T 3frx_A 172 A----------GNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDG--EIMLWNLAAK--KAMY 232 (319)
T ss_dssp E----------ETTSCEEEEET---TTTEEEEEECCCCSCEEEEEECTTSSEEEEEE--TTC--EEEEEETTTT--EEEE
T ss_pred E----------eCCCEEEEEEC---CcchhheeecCCCCcEEEEEEcCCCCEEEEEe--CCC--eEEEEECCCC--cEEE
Confidence 1 11235666675 322222 2333445577889999999877654 223 5777788763 2221
Q ss_pred Eee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 341 LFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 341 l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.+. ..+.. +.|+|+|..++...
T Consensus 233 ~~~~~~~v~~---------~~~sp~~~~la~~~ 256 (319)
T 3frx_A 233 TLSAQDEVFS---------LAFSPNRYWLAAAT 256 (319)
T ss_dssp EEECCSCEEE---------EEECSSSSEEEEEE
T ss_pred EecCCCcEEE---------EEEcCCCCEEEEEc
Confidence 121 12222 78999999876654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.3e-06 Score=80.56 Aligned_cols=230 Identities=13% Similarity=0.135 Sum_probs=127.2
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
+.+..... .+....|||||++||-... + ..|.++|+.+++......... ..+....|+|+++.|
T Consensus 7 ~~~~~h~~--~V~~~~fsp~~~~l~s~~~--------d--g~v~lWd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 7 KTFSNRSD--RVKGIDFHPTEPWVLTTLY--------S--GRVELWNYETQVEVRSIQVTE----TPVRAGKFIARKNWI 70 (304)
T ss_dssp EEEEEECS--CEEEEEECSSSSEEEEEET--------T--SEEEEEETTTTEEEEEEECCS----SCEEEEEEEGGGTEE
T ss_pred EeecCCCC--ceEEEEECCCCCEEEEEcC--------C--CcEEEEECCCCceeEEeeccC----CcEEEEEEeCCCCEE
Confidence 44543333 4889999999998876542 2 456666988876433322221 146688999999988
Q ss_pred EEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCeee
Q 007620 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYT 178 (595)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~~~ 178 (595)
+....+ ..|.++|+ +++ ...+. ....+.
T Consensus 71 ~s~s~d-------------------------------------------------~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 71 IVGSDD-------------------------------------------------FRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp EEEETT-------------------------------------------------SEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEECCC-------------------------------------------------CEEEEEECCCCcEEEEEeCCCCcEE
Confidence 775211 23445555 443 22332 234567
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEE-eccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
.++|+|++++|+..+.+ ..+.+||+.++ .... +.... .....+.|+|++...
T Consensus 102 ~~~~~~~~~~l~sgs~D-------------~~v~lWd~~~~~~~~~~~~~h~-------------~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEECSSSSEEEEEETT-------------SCEEEEEGGGTTEEEEEECCCC-------------SCEEEEEECTTCTTE
T ss_pred EEEEcCCCCEEEEECCC-------------CeEEEEECCCCcchhhhhcccC-------------CcEEEEEECCCCCCE
Confidence 89999999988766542 36888998754 3322 22111 112357888843322
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccc-cCccccceeecC--CCcEEEEEEeecccceEEEEEeCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWCD--DSLALVNETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~-~~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~L~~~d~~ 332 (595)
++.. .....+.+||+ ..+.. ..+.. .........|+| ++..++... .++ .|.++|+.
T Consensus 156 l~sg------------s~D~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~--~i~iWd~~ 216 (304)
T 2ynn_A 156 FASG------------CLDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDL--TIKIWDYQ 216 (304)
T ss_dssp EEEE------------ETTSEEEEEET---TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTS--EEEEEETT
T ss_pred EEEE------------eCCCeEEEEEC---CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCC--eEEEEeCC
Confidence 3322 12235667775 22222 22222 223345566765 666666653 223 56667887
Q ss_pred CCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 333 SKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 333 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+++ ....+..+ .+.. +.|+|+++.|+...
T Consensus 217 ~~~-~~~~~~~h~~~v~~---------~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 217 TKS-CVATLEGHMSNVSF---------AVFHPTLPIIISGS 247 (304)
T ss_dssp TTE-EEEEEECCSSCEEE---------EEECSSSSEEEEEE
T ss_pred CCc-cceeeCCCCCCEEE---------EEECCCCCEEEEEc
Confidence 631 11222221 2222 68899998766544
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-05 Score=80.31 Aligned_cols=227 Identities=11% Similarity=0.083 Sum_probs=123.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||++||-.+. + ..|.++|..+++......... ..+..+.|+|+|+.|+....+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~--------D--g~v~vWd~~~~~~~~~~~~~~----~~v~~~~~sp~g~~lasg~~d---- 127 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQ--------D--GKVIVWDSFTTNKEHAVTMPC----TWVMACAYAPSGCAIACGGLD---- 127 (354)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SEEEEEETTTCCEEEEEECSS----SCCCEEEECTTSSEEEEESTT----
T ss_pred eEEEEEECCCCCEEEEEeC--------C--CeEEEEECCCCCcceEEecCC----CCEEEEEECCCCCEEEEeeCC----
Confidence 5889999999998766542 2 456666887776433322222 146689999999988775211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC---C---Ceeec-CCCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---G---TAKDF-GTPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---g---~~~~l-t~~~~~~~~~~Sp 184 (595)
+ .-.+|.+... + ....+ .....+..+.|+|
T Consensus 128 ------------------~-------------------------~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 164 (354)
T 2pbi_B 128 ------------------N-------------------------KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164 (354)
T ss_dssp ------------------S-------------------------EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS
T ss_pred ------------------C-------------------------CEEEEEEeccccccccccceeeeccCCcEEEEEEeC
Confidence 1 0011111110 0 01111 1223456789999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecC--CCeeEEEEE
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD--KPSTLYWVE 261 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd--g~~~l~~~~ 261 (595)
+++.|+..+.+ ..+.+||+.+++. ..+.... .....+.|+|+ |. .++..
T Consensus 165 ~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~g~-~l~sg- 216 (354)
T 2pbi_B 165 SDMQILTASGD-------------GTCALWDVESGQLLQSFHGHG-------------ADVLCLDLAPSETGN-TFVSG- 216 (354)
T ss_dssp SSSEEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECCCSSCC-EEEEE-
T ss_pred CCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEcCCC-------------CCeEEEEEEeCCCCC-EEEEE-
Confidence 99998877542 3688999886543 3333211 11223455553 43 23221
Q ss_pred eecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 262 ~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
.....+.+||. ..++.. .+......+..+.|+|++..|+... .++ .+.++|+.+. ....
T Consensus 217 -----------s~Dg~v~~wd~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~D~--~v~lwd~~~~--~~~~ 276 (354)
T 2pbi_B 217 -----------GCDKKAMVWDM---RSGQCVQAFETHESDVNSVRYYPSGDAFASGS--DDA--TCRLYDLRAD--REVA 276 (354)
T ss_dssp -----------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTTT--EEEE
T ss_pred -----------eCCCeEEEEEC---CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe--CCC--eEEEEECCCC--cEEE
Confidence 11235677776 323333 2333445677899999998877654 234 4556677662 2222
Q ss_pred EeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
++...... .+...+.|+++|+.++...
T Consensus 277 ~~~~~~~~----~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 277 IYSKESII----FGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EECCTTCC----SCEEEEEECTTSSEEEEEE
T ss_pred EEcCCCcc----cceeEEEEeCCCCEEEEEE
Confidence 22211000 0011278999999877654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-06 Score=86.00 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=138.3
Q ss_pred eeEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +++ .+.+..+. ..+....|+|||+.||-.+. + ..|.++|+.+++..+......
T Consensus 131 ~i~vwd~~----~~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~--------D--~~i~iwd~~~~~~~~~~~~h~-- 192 (410)
T 1vyh_C 131 TIKVWDYE----TGDFERTLKGHT--DSVQDISFDHSGKLLASCSA--------D--MTIKLWDFQGFECIRTMHGHD-- 192 (410)
T ss_dssp CEEEEETT----TCCCCEEECCCS--SCEEEEEECTTSSEEEEEET--------T--SCCCEEETTSSCEEECCCCCS--
T ss_pred eEEEEECC----CCcEEEEEeccC--CcEEEEEEcCCCCEEEEEeC--------C--CeEEEEeCCCCceeEEEcCCC--
Confidence 47788887 444 44454322 35888999999997765542 2 345555888777544322211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
..+..+.|+|+|+.|+....+ ..|.++|+
T Consensus 193 --~~V~~v~~~p~~~~l~s~s~D-------------------------------------------------~~i~~wd~ 221 (410)
T 1vyh_C 193 --HNVSSVSIMPNGDHIVSASRD-------------------------------------------------KTIKMWEV 221 (410)
T ss_dssp --SCEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEET
T ss_pred --CCEEEEEEeCCCCEEEEEeCC-------------------------------------------------CeEEEEEC
Confidence 156789999999987764211 23444555
Q ss_pred -CCC-eeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 165 -DGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 165 -~g~-~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
++. .+.+. ....+..+.++|||+.|+....+ ..+.+||+.+++. ..+....
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D-------------~~v~vwd~~~~~~~~~~~~h~------------ 276 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREHR------------ 276 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCCS------------
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCceeeEecCCC------------
Confidence 443 22332 22345678999999988877642 3688899876543 3332211
Q ss_pred ccCCCCceeecCCCe------------------eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccc
Q 007620 241 REGMRSISWRADKPS------------------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRF 301 (595)
Q Consensus 241 ~~~~~~~~wspdg~~------------------~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~ 301 (595)
.....+.|+|++.. .+... . .....+.+||+ ..+.. ..+......+
T Consensus 277 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s-g----------s~D~~i~iwd~---~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 277 -HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-G----------SRDKTIKMWDV---STGMCLMTLVGHDNWV 341 (410)
T ss_dssp -SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE-E----------ETTSEEEEEET---TTTEEEEEEECCSSCE
T ss_pred -ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE-E----------eCCCeEEEEEC---CCCceEEEEECCCCcE
Confidence 01224556665320 01111 1 12235777786 32232 2333344556
Q ss_pred cceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..+.|+|+|..|+... .++ .|.++|+.+++ ....+.. ..+.. +.|++++..|+...
T Consensus 342 ~~v~~~~~g~~l~s~s--~D~--~i~vwd~~~~~-~~~~~~~h~~~v~~---------l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCA--DDK--TLRVWDYKNKR-CMKTLNAHEHFVTS---------LDFHKTAPYVVTGS 399 (410)
T ss_dssp EEEEECSSSSCEEEEE--TTT--EEEEECCTTSC-CCEEEECCSSCEEE---------EEECSSSSCEEEEE
T ss_pred EEEEEcCCCCEEEEEe--CCC--eEEEEECCCCc-eEEEEcCCCCcEEE---------EEEcCCCCEEEEEe
Confidence 7889999999877654 234 56667877642 2333322 22333 78999998766543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.7e-06 Score=83.28 Aligned_cols=240 Identities=13% Similarity=0.094 Sum_probs=122.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||++||-.+. ...|.++|+.+++......... ..+..+.|+|||+.|+....+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~h~----~~v~~~~~s~~g~~las~~~d---- 129 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ----------DGRLIVWNALTSQKTHAIKLHC----PWVMECAFAPNGQSVACGGLD---- 129 (380)
T ss_dssp CEEEEEECTTSSCEEEEET----------TSEEEEEETTTTEEEEEEECCC----TTCCCCEECTTSSEEEECCSS----
T ss_pred EEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCccceEEecCC----CCEEEEEECCCCCEEEEeeCC----
Confidence 5889999999998766542 2456667988876544332221 146689999999988764211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC----CCC---eeecC-CCCeeeeeEEC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGT---AKDFG-TPAVYTAVEPS 183 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~----~g~---~~~lt-~~~~~~~~~~S 183 (595)
+ .-.||-+.. .+. .+.+. .......+.|+
T Consensus 130 ------------------~-------------------------~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~ 166 (380)
T 3iz6_a 130 ------------------S-------------------------ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166 (380)
T ss_dssp ------------------S-------------------------CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCC
T ss_pred ------------------C-------------------------cEEEEECCCCccccCCccceeeccCCCcceEEEEEe
Confidence 0 011111110 010 11121 12234567899
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeec-CCCeeEEEEEe
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEA 262 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp-dg~~~l~~~~~ 262 (595)
|++...+++... ...+.+||+.++........... .+.......+.|++ ++. .++..
T Consensus 167 ~~~~~~l~s~s~------------D~~i~~wd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~-~l~sg-- 224 (380)
T 3iz6_a 167 PDQETRLITGSG------------DQTCVLWDVTTGQRISIFGSEFP-------SGHTADVLSLSINSLNAN-MFISG-- 224 (380)
T ss_dssp SSSSSCEEEECT------------TSCEEEECTTTCCEEEEECCCSS-------SSCCSCEEEEEECSSSCC-EEEEE--
T ss_pred cCCCCEEEEECC------------CCcEEEEEcCCCcEEEEeecccC-------CCCccCeEEEEeecCCCC-EEEEE--
Confidence 986554444432 23688999886654332211100 00001122355654 443 22221
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.....+.+||+ ...+...+.+......+..+.|+||+..|+... .++ .|.++|+.++ .....+
T Consensus 225 ----------s~D~~v~~wd~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~D~--~i~lwd~~~~--~~~~~~ 287 (380)
T 3iz6_a 225 ----------SCDTTVRLWDL-RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS--DDG--TCRLFDMRTG--HQLQVY 287 (380)
T ss_dssp ----------ETTSCEEEEET-TTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC--SSS--CEEEEETTTT--EEEEEE
T ss_pred ----------ECCCeEEEEEC-CCCCcceEEECCcCCCeEEEEEecCCCeEEEEc--CCC--eEEEEECCCC--cEEEEe
Confidence 11235666775 111112233444556688899999999887654 234 4666687763 222222
Q ss_pred ecccc-cccCCCCCCCeeeCCCCCEEEEEe
Q 007620 343 DRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 343 ~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..... .....+....+.|+++|+.++...
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred cccccccccccCceEEEEECCCCCEEEEEE
Confidence 21110 000001112378999999877654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-06 Score=89.45 Aligned_cols=304 Identities=10% Similarity=0.081 Sum_probs=148.6
Q ss_pred cccceEEccC-CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEec-CCcEEEEEecCCC
Q 007620 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-dg~~l~~~~~~~~ 109 (595)
.+...+|+|+ ++.||.-+ . + ..|.++|+.+++...+..... ....+..+.|+| |++.|+-...+
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~-------d--g~i~lWd~~~~~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s~D-- 186 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-K-------G--GDIMLWNFGIKDKPTFIKGIG--AGGSITGLKFNPLNTNQFYASSME-- 186 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-T-------T--SCEEEECSSCCSCCEEECCCS--SSCCCCEEEECSSCTTEEEEECSS--
T ss_pred CEEEEEEeCCCCCEEEEEe-C-------C--CEEEEEECCCCCceeEEEccC--CCCCEEEEEEeCCCCCEEEEEeCC--
Confidence 4788999995 55555433 2 2 456666887766433322111 112577999998 67766554211
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCC----CeeeeeEECC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPSP 184 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~----~~~~~~~~Sp 184 (595)
..|.++|+.+ ..+.+... .....++|+|
T Consensus 187 -----------------------------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 187 -----------------------------------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp -----------------------------------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred -----------------------------------------------CEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 1233445533 22222111 1234789999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
||+.|+.... ...|.+||+.++....+... ......+.|+|++...++.. .
T Consensus 220 ~~~~l~~g~~-------------dg~i~~wd~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~~~~s~-s-- 270 (435)
T 4e54_B 220 SSRMVVTGDN-------------VGNVILLNMDGKELWNLRMH-------------KKKVTHVALNPCCDWFLATA-S-- 270 (435)
T ss_dssp TTTEEEEECS-------------SSBEEEEESSSCBCCCSBCC-------------SSCEEEEEECTTCSSEEEEE-E--
T ss_pred CCCEEEEEeC-------------CCcEeeeccCcceeEEEecc-------------cceEEeeeecCCCceEEEEe-c--
Confidence 9998877643 23688999887654433211 11234578999987533222 1
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCceecc---ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
....+.+||+ ..+.....+. .....+..+.|+|||..|+... .++ .|.++|+.+++ .+..+
T Consensus 271 ---------~d~~v~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~--~D~--~i~iwd~~~~~-~~~~~ 334 (435)
T 4e54_B 271 ---------VDQTVKIWDL--RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD--QKS--EIRVYSASQWD-CPLGL 334 (435)
T ss_dssp ---------TTSBCCEEET--TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE--SSS--CEEEEESSSSS-SEEEE
T ss_pred ---------CcceeeEEec--ccccccceEEEeeeccccccceeECCCCCeeEEEc--CCC--EEEEEECCCCc-cceEE
Confidence 1123445554 1111111221 2234567789999999877654 223 46666777642 22333
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCcccccee
Q 007620 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (595)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (595)
..+... ...........|++++..+++..... +..+...+ .....+..+|..+|+.......... ..
T Consensus 335 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~------~~~~~i~iwd~~~g~~~~~l~~~~~---~~ 401 (435)
T 4e54_B 335 IPHPHR-HFQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSCTP------YELRTIDVFDGNSGKMMCQLYDPES---SG 401 (435)
T ss_dssp CCCCCC-CCSSSCCCBCEECSSSSCEEEECCCC---TTSCCSST------TCCCCEEEECSSSCCEEEEECCSSC---CC
T ss_pred eccccc-ccccceeEEEEEcCCCCEEEEEEcCC---CCeEEEEe------cCCCEEEEEECCCCcEEEEEeCCCC---Cc
Confidence 221110 00000011256788887766554321 11111110 0111233456666664433221110 11
Q ss_pred eEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCcee
Q 007620 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (595)
Q Consensus 422 ~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~ 465 (595)
+..+ ..|++++..|+ +.+ . ..+.+-++..++.+
T Consensus 402 v~s~------~~fspdg~~la-sg~-d---~~i~iW~~~~gk~r 434 (435)
T 4e54_B 402 ISSL------NEFNPMGDTLA-SAM-G---YHILIWSQQEARTR 434 (435)
T ss_dssp CCCE------EEECTTSSCEE-EEC-S---SEEEECCCC-----
T ss_pred EEEE------EEECCCCCEEE-EEc-C---CcEEEEECCcCeee
Confidence 1111 24788887654 332 2 24778787766554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-06 Score=95.10 Aligned_cols=236 Identities=11% Similarity=0.091 Sum_probs=138.9
Q ss_pred eeEEEecCCCCCCCC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCc
Q 007620 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~ 83 (595)
.|.|+|+. +|+ .+.++. ....+..+.|||||++||.... ...|.++++.+++... +.....
T Consensus 36 ~v~iwd~~----~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~- 98 (814)
T 3mkq_A 36 RVEIWNYE----TQVEVRSIQV--TETPVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD- 98 (814)
T ss_dssp EEEEEETT----TTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-
T ss_pred EEEEEECC----CCceEEEEec--CCCcEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEecCCC-
Confidence 57888887 453 445553 2335889999999999988753 3568888998887544 332222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+..+.|+||++.|+....+ ..|.+++
T Consensus 99 ----~v~~~~~s~~~~~l~~~~~d-------------------------------------------------g~i~vw~ 125 (814)
T 3mkq_A 99 ----YIRSIAVHPTKPYVLSGSDD-------------------------------------------------LTVKLWN 125 (814)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----CEEEEEEeCCCCEEEEEcCC-------------------------------------------------CEEEEEE
Confidence 56789999999988765211 1233444
Q ss_pred C-CC-Ce-eecC-CCCeeeeeEECC-CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccc
Q 007620 164 L-DG-TA-KDFG-TPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (595)
Q Consensus 164 ~-~g-~~-~~lt-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~ 237 (595)
+ ++ .. ..+. .......++|+| |++.|+..... ..+.+||+.++.. ..+....
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~~--------- 183 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQ--------- 183 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-------------SEEEEEETTCSSCSEEEECCC---------
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCcceeEEecCC---------
Confidence 4 22 22 2222 233456889999 77777776532 3688999875433 2222110
Q ss_pred cccccCCCCceeec--CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEE
Q 007620 238 NSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALV 314 (595)
Q Consensus 238 ~~~~~~~~~~~wsp--dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~ 314 (595)
......+.|+| ++.. |+.. .....+.+++. ..++.. .+......+..+.|+|++..++
T Consensus 184 ---~~~v~~~~~~~~~~~~~-l~~~------------~~dg~i~~~d~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 184 ---ERGVNYVDYYPLPDKPY-MITA------------SDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp ---TTCCCEEEECCSTTCCE-EEEE------------CTTSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred ---CCCEEEEEEEECCCCCE-EEEE------------eCCCEEEEEEC---CCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 01134578888 7662 3222 12235677775 322322 2333445677899999998776
Q ss_pred EEEeecccceEEEEEeCCCCCCCcEEEee---cccccccCCCCCCCeeeCCCCCEE
Q 007620 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~dg~~l 367 (595)
... .++ .|.++|+.++ .....+. ..+.. +.|+|+|+.+
T Consensus 245 ~~~--~dg--~v~vwd~~~~--~~~~~~~~~~~~v~~---------~~~~~~~~~~ 285 (814)
T 3mkq_A 245 SGS--EDG--TLKIWNSSTY--KVEKTLNVGLERSWC---------IATHPTGRKN 285 (814)
T ss_dssp EEE--TTS--CEEEEETTTC--SEEEEECCSSSSEEE---------EEECTTCGGG
T ss_pred EEe--CCC--eEEEEECCCC--cEEEEeecCCCcEEE---------EEEccCCCce
Confidence 653 223 5667788763 2222221 12222 7889998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-07 Score=89.08 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=125.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc---eEecccCCCccccccccceEEecCCcEEEEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
.+...+|||||+.||.... ...|.++++.+++ ...+..... .+..+.|+|+++.|+....+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d- 73 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD- 73 (372)
T ss_dssp CCCEEEECTTSSEEEEECS----------SSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEEeC----------CCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC-
Confidence 5889999999998887642 3567777888775 333332222 56789999999988775211
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee---ecC-CCCeeeeeEEC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFG-TPAVYTAVEPS 183 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~---~lt-~~~~~~~~~~S 183 (595)
..|.++++ +++.. .+. .......++|+
T Consensus 74 ------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 74 ------------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ------------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ------------------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 12333444 33211 111 22345689999
Q ss_pred CCCCeEEEEEcccCccccccCcccceeEEEEcCCCce----EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEE
Q 007620 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (595)
Q Consensus 184 pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~ 259 (595)
|||++|+..... ..+.+||+..+. ...+... .......+.|+|+++. ++.
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~-l~~ 159 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKKP------------IRSTVLSLDWHPNSVL-LAA 159 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECTT------------CCSCEEEEEECTTSSE-EEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeecc------------cCCCeeEEEEcCCCCE-EEE
Confidence 999998887642 257777766443 1222110 0011346889999873 322
Q ss_pred EEeecCCCcccccCCcceEEeccCCC---------------CCCCCc-eeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 260 VEAQDRGDANVEVSPRDIIYTQPAEP---------------AEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 260 ~~~~d~~~~~~~~~~~~~~~~~d~~~---------------~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
. . ....+.++++.. ...++. ..+......+..+.|+|++..|+... .++
T Consensus 160 ~-~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~- 224 (372)
T 1k8k_C 160 G-S-----------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS--HDS- 224 (372)
T ss_dssp E-E-----------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE--TTT-
T ss_pred E-c-----------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe--CCC-
Confidence 2 1 122455555300 001122 22323344577899999998777654 223
Q ss_pred eEEEEEeCCCCCCCcEEEeec---ccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 324 TRTWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 324 ~~L~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
.|.++|+.++ +....+.. .+.. +.|+++|+.++..
T Consensus 225 -~i~i~d~~~~--~~~~~~~~~~~~v~~---------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 225 -TVCLADADKK--MAVATLASETLPLLA---------VTFITESSLVAAG 262 (372)
T ss_dssp -EEEEEEGGGT--TEEEEEECSSCCEEE---------EEEEETTEEEEEE
T ss_pred -EEEEEECCCC--ceeEEEccCCCCeEE---------EEEecCCCEEEEE
Confidence 5777788763 32222221 2222 7889998866544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.76 E-value=9.2e-07 Score=90.25 Aligned_cols=121 Identities=13% Similarity=0.008 Sum_probs=67.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
....++|+|+| .|+.... ...+.+||+.+++. ..+........ .......+.|+|+++
T Consensus 188 ~i~~~~~~~~~-~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~h~~-------~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 188 FATSVDISERG-LIATGFN-------------NGTVQISELSTLRPLYNFESQHSMIN-------NSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCEEEECTTS-EEEEECT-------------TSEEEEEETTTTEEEEEEECCC---C-------CCCCEEEEEECSSTT
T ss_pred CceEEEECCCc-eEEEEeC-------------CCcEEEEECCCCceeEEEeccccccc-------cCCccceEEECCCCC
Confidence 35678999999 6555532 23789999886544 33332000000 001134688999987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccc-------------cCccccceeecCCCcEEEEEEeec
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHK-------------LDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~-------------~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
. |+.. ..++ ....+.++|+ ..++.. .+.. ....+..+.|+||+..|+... .
T Consensus 247 ~-l~~~-~~d~--------~~g~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~ 311 (397)
T 1sq9_A 247 L-LAIA-HDSN--------SFGCITLYET---EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--W 311 (397)
T ss_dssp E-EEEE-EEET--------TEEEEEEEET---TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--T
T ss_pred E-EEEE-ecCC--------CCceEEEEEC---CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--C
Confidence 3 3322 1110 0035777775 323332 2333 345577899999999877654 2
Q ss_pred ccceEEEEEeCCCC
Q 007620 321 TSQTRTWLVCPGSK 334 (595)
Q Consensus 321 ~~~~~L~~~d~~~~ 334 (595)
++ .|.++|+.++
T Consensus 312 dg--~i~iwd~~~~ 323 (397)
T 1sq9_A 312 DG--KLRFWDVKTK 323 (397)
T ss_dssp TS--EEEEEETTTT
T ss_pred CC--eEEEEEcCCC
Confidence 23 6777888773
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-05 Score=81.01 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=122.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.+....|||||+.|+-.+. ...|.++|+.+++... +..... .+..+.|+||++.|+....+
T Consensus 78 ~V~~~~~~~~~~~l~s~s~----------D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d--- 139 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSW----------DKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAE--- 139 (343)
T ss_dssp CEEEEEECSSTTEEEEEET----------TSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETT---
T ss_pred ceEEEEECCCCCEEEEEcC----------CCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCC---
Confidence 5788999999998764432 2456677998887543 332222 56789999999988765211
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecC----CCCeeeeeEECCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFG----TPAVYTAVEPSPD 185 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt----~~~~~~~~~~SpD 185 (595)
..|.++|+.+. ...+. .......+.|+|+
T Consensus 140 ----------------------------------------------~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 140 ----------------------------------------------REIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp ----------------------------------------------SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred ----------------------------------------------CEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence 12233333221 11111 1223557788888
Q ss_pred C----------CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 186 Q----------KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 186 g----------~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+ .+|+.... ...+.+||..+.....+.... .....+.|+|||+.
T Consensus 174 ~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~h~-------------~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGW-------------DGRLKVWNTNFQIRYTFKAHE-------------SNVNHLSISPNGKY 227 (343)
T ss_dssp CCSCSCCCSSCCEEEEEET-------------TSEEEEEETTTEEEEEEECCS-------------SCEEEEEECTTSSE
T ss_pred cccccccCCCCCEEEEEcC-------------CCEEEEEcCCCceeEEEcCcc-------------ccceEEEECCCCCE
Confidence 7 45554432 236888996655444443221 11345889999983
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~ 335 (595)
|+.. .....+.+||+ ...+...........+..+.|+|++..++... ++ .+.++++.+..
T Consensus 228 -l~sg------------s~dg~v~iwd~--~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~---d~--~v~iw~~~~~~ 287 (343)
T 2xzm_R 228 -IATG------------GKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGT---DQ--GVKIFNLMTQS 287 (343)
T ss_dssp -EEEE------------ETTCEEEEEES--SCCSSCSEEEECSSCEEEEEECSSSCEEEEEE---SS--CEEEEESSSCC
T ss_pred -EEEE------------cCCCeEEEEEC--CCCcccceeecCCCcEEEEEECCCCCEEEEEC---CC--CEEEEEeCCCC
Confidence 3222 12245677775 12222222222334577899999998765432 22 35566766632
Q ss_pred CCcEEEee-ccccccc---C-CCCCCCeeeCCCCCEEEEEe
Q 007620 336 VAPRVLFD-RVFENVY---S-DPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 336 ~~~~~l~~-~~~~~~~---~-~~~~~~~~~~~dg~~l~~~~ 371 (595)
......+. ....... . .+....+.|+|+|+.|+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 11111111 0000000 0 00011278999999876654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-06 Score=88.23 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=133.5
Q ss_pred eeEEEecCCCCCCCCceeeecC-CCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~-~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|+|+. +++......+ .....+....|+| |++.|+... . ...|.++++.++....+.....
T Consensus 97 ~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~---------d~~i~iwd~~~~~~~~~~~~~~- 161 (383)
T 3ei3_B 97 DIILWDYD----VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-I---------RGATTLRDFSGSVIQVFAKTDS- 161 (383)
T ss_dssp CEEEEETT----STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-T---------TTEEEEEETTSCEEEEEECCCC-
T ss_pred eEEEEeCC----CcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-C---------CCEEEEEECCCCceEEEeccCC-
Confidence 57888887 5555444322 2334688999999 566655543 2 2567777988766555543321
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+..+.|+|+++.|+.... ...|.++|
T Consensus 162 -~~~~v~~~~~~~~~~~l~~~~~-------------------------------------------------d~~i~i~d 191 (383)
T 3ei3_B 162 -WDYWYCCVDVSVSRQMLATGDS-------------------------------------------------TGRLLLLG 191 (383)
T ss_dssp -SSCCEEEEEEETTTTEEEEEET-------------------------------------------------TSEEEEEE
T ss_pred -CCCCeEEEEECCCCCEEEEECC-------------------------------------------------CCCEEEEE
Confidence 1124678999999998776521 12455566
Q ss_pred CCCC-eeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC----ceEEEeccCCCCccCCccc
Q 007620 164 LDGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG----KLVRELCDLPPAEDIPVCY 237 (595)
Q Consensus 164 ~~g~-~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~l~~~~~~~~~~~~~ 237 (595)
++++ ...+. ....+..++|+|++++++++.... ..+.+||+.. +.........
T Consensus 192 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~--------- 250 (383)
T 3ei3_B 192 LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD------------ATVKLWDLRNIKDKNSYIAEMPHE--------- 250 (383)
T ss_dssp TTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT------------SEEEEEEGGGCCSTTCEEEEEECS---------
T ss_pred CCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC------------CEEEEEeCCCCCcccceEEEecCC---------
Confidence 6543 33332 234567899999999544444322 3688898764 2222211110
Q ss_pred cccccCCCCceeec-CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC------ccccceeecCCC
Q 007620 238 NSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD------LRFRSVSWCDDS 310 (595)
Q Consensus 238 ~~~~~~~~~~~wsp-dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~------~~~~~~~wspDg 310 (595)
.....+.|+| ++.. |+.. .....+.++|+ .++.....+.... .......|+|++
T Consensus 251 ----~~v~~~~~s~~~~~~-l~~~------------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 311 (383)
T 3ei3_B 251 ----KPVNAAYFNPTDSTK-LLTT------------DQRNEIRVYSS--YDWSKPDQIIIHPHRQFQHLTPIKATWHPMY 311 (383)
T ss_dssp ----SCEEEEEECTTTSCE-EEEE------------ESSSEEEEEET--TBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred ----CceEEEEEcCCCCCE-EEEE------------cCCCcEEEEEC--CCCccccccccccccccccccceEEeccCCC
Confidence 1134688999 8873 3322 11245667775 2222222222111 111234677766
Q ss_pred cEEEEEEee-----cccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 311 LALVNETWY-----KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 311 ~~l~~~~~~-----~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
..++..... ......|.++|+.+++ ....+......... ..+.|+++|+.|+..
T Consensus 312 ~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~-~~~~l~~~~~~~~~-----~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 312 DLIVAGRYPDDQLLLNDKRTIDIYDANSGG-LVHQLRDPNAAGII-----SLNKFSPTGDVLASG 370 (383)
T ss_dssp SEEEEECBCCTTTCTTCCCCEEEEETTTCC-EEEEECBTTBCSCC-----CEEEECTTSSEEEEE
T ss_pred CceEEEecCCcccccCCCCeEEEEecCCCc-eeeeecCCCCCceE-----EEEEEecCccEEEEe
Confidence 543322100 0012357777887731 22222211111111 125899999987655
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=95.90 Aligned_cols=224 Identities=12% Similarity=0.048 Sum_probs=118.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||++||.... + ..|.++++.++....+..... ....+..+.|+||++.|+....+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~--------d--~~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d---- 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA--------T--NQVELYEQDGNGWKHARTFSD--HDKIVTCVDWAPKSNRIVTCSQD---- 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCS--------S--SCBCEEEEETTEEEECCCBCC--CSSCEEEEEECTTTCCEEEEETT----
T ss_pred cEEEEEECCCCCEEEEecC--------C--CEEEEEEccCCceEEEEEEec--CCceEEEEEEeCCCCEEEEEeCC----
Confidence 5889999999998876532 2 344555666663233322211 01256789999999988775321
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC----eeecC-CCCeeeeeEECCC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT----AKDFG-TPAVYTAVEPSPD 185 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~----~~~lt-~~~~~~~~~~SpD 185 (595)
..|.++++ +++ ...+. ....+..++|+||
T Consensus 77 ---------------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (377)
T 3dwl_C 77 ---------------------------------------------RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN 111 (377)
T ss_dssp ---------------------------------------------SSEEEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred ---------------------------------------------CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence 12333333 222 11222 2234568999999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCce----EEEecc-CCCCccCCccccccccCCCCceeecCCCeeEEEE
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
|+.|+..... ..+.+||+.++. .+.+.. .. .....+.|+|+++. |+..
T Consensus 112 ~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~~~ 164 (377)
T 3dwl_C 112 EDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKRPLR-------------STILSLDWHPNNVL-LAAG 164 (377)
T ss_dssp SSCCEEEESS-------------SCEEECCC-----CCCCEEECSSCC-------------SCEEEEEECTTSSE-EEEE
T ss_pred CCEEEEEecC-------------CeEEEEEECCcccceeeeEeecccC-------------CCeEEEEEcCCCCE-EEEE
Confidence 9998877642 368889988664 333332 11 11346889999873 3322
Q ss_pred EeecCCCcccccCCcceEEeccCCCCCC-----------------CCceeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 261 EAQDRGDANVEVSPRDIIYTQPAEPAEG-----------------EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 261 ~~~d~~~~~~~~~~~~~~~~~d~~~~~g-----------------~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
.. ...+.++++ ..+ ++..........+..+.|+|||..|+... .++
T Consensus 165 -~~-----------d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~- 227 (377)
T 3dwl_C 165 -CA-----------DRKAYVLSA--YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG--HDS- 227 (377)
T ss_dssp -ES-----------SSCEEEEEE--CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE--TTT-
T ss_pred -eC-----------CCEEEEEEE--EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe--CCC-
Confidence 11 123445553 000 01111112334467889999999877654 223
Q ss_pred eEEEEEeCCCCCCCc---EEEee--cccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 324 TRTWLVCPGSKDVAP---RVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 324 ~~L~~~d~~~~~~~~---~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
.|.++|+.+++..+ ..+.. ..+.. +.|+++|+.|+..
T Consensus 228 -~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---------~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 228 -SVTIAYPSAPEQPPRALITVKLSQLPLRS---------LLWANESAIVAAG 269 (377)
T ss_dssp -EEC-CEECSTTSCEEECCCEECSSSCEEE---------EEEEETTEEEEEE
T ss_pred -cEEEEECCCCCCcceeeEeecCCCCceEE---------EEEcCCCCEEEEE
Confidence 56666766642111 11211 11222 7899999876554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-06 Score=83.65 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=124.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.+....|+|||+.|+-.+. + ..|.++|+.+++... +..... .+..+.|+|+|+.|+....+
T Consensus 110 ~V~~~~~~p~~~~l~s~s~--------D--g~i~vwd~~~~~~~~~l~~h~~-----~V~~v~~~~~~~~l~sgs~D--- 171 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE--------D--ATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCSAD--- 171 (410)
T ss_dssp CEEEEEECSSSSEEEEEES--------S--SCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEETT---
T ss_pred cEEEEEEcCCCCEEEEEeC--------C--CeEEEEECCCCcEEEEEeccCC-----cEEEEEEcCCCCEEEEEeCC---
Confidence 4778899999997766542 2 456667988887543 322222 46789999999987765321
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC-CCCeeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~~~SpDg~ 187 (595)
+ .|.++|+ +++. +.+. ....+..++|+|+|+
T Consensus 172 -------------------~---------------------------~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 205 (410)
T 1vyh_C 172 -------------------M---------------------------TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205 (410)
T ss_dssp -------------------S---------------------------CCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred -------------------C---------------------------eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence 1 1222333 2222 2222 223456899999999
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
+|+..+.+ ..+.+||+.++. .+.+.... .....+.+++||.. ++..
T Consensus 206 ~l~s~s~D-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~g~~-l~s~------ 252 (410)
T 1vyh_C 206 HIVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTL-IASC------ 252 (410)
T ss_dssp EEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSE-EEEE------
T ss_pred EEEEEeCC-------------CeEEEEECCCCcEEEEEeCCC-------------ccEEEEEECCCCCE-EEEE------
Confidence 88776532 378899987554 34433221 11235678888873 2221
Q ss_pred CcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCC--------------------CcEEEEEEeecccceE
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDD--------------------SLALVNETWYKTSQTR 325 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspD--------------------g~~l~~~~~~~~~~~~ 325 (595)
.....+.+|+. ..++.. .+......+..+.|+|+ |..++... .++ .
T Consensus 253 ------s~D~~v~vwd~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~--~ 319 (410)
T 1vyh_C 253 ------SNDQTVRVWVV---ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDK--T 319 (410)
T ss_dssp ------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTS--E
T ss_pred ------cCCCeEEEEEC---CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCC--e
Confidence 11234666665 322332 23334445667788886 33455443 223 5
Q ss_pred EEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 326 TWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 326 L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
|.++|+.++. ....+..+ .+.. +.|+++|+.|+...
T Consensus 320 i~iwd~~~~~-~~~~~~~h~~~v~~---------v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 320 IKMWDVSTGM-CLMTLVGHDNWVRG---------VLFHSGGKFILSCA 357 (410)
T ss_dssp EEEEETTTTE-EEEEEECCSSCEEE---------EEECSSSSCEEEEE
T ss_pred EEEEECCCCc-eEEEEECCCCcEEE---------EEEcCCCCEEEEEe
Confidence 7777887631 11222221 2222 78899999876554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-05 Score=81.78 Aligned_cols=229 Identities=10% Similarity=-0.014 Sum_probs=122.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-------eEecccCCCccccccccceEEecC----C--
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLFESPDICLNAVFGSFVWVNN----S-- 98 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~~~lt~~~~~~~~~~~~~~~Wspd----g-- 98 (595)
.+....|+| +.|+.... ...|.++++.+++ ...+..... .+..+.|+|+ |
T Consensus 18 ~i~~~~~~~--~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSG----------DGYLKVWDNKLLDNENPKDKSYSHFVHKS-----GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp CEEEEEECS--SEEEEEET----------TSEEEEEESBCCTTCCGGGGEEEEECCTT-----CEEEEEEEEEEETTTEE
T ss_pred CeEEEEecC--CeEEEEcC----------CCEEEEEECCCcccccCCCcceEEecCCC-----cEEEEEEecccccCCcc
Confidence 577899999 55555432 3567777888876 444433332 5678999999 8
Q ss_pred -cEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC------eee
Q 007620 99 -TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT------AKD 170 (595)
Q Consensus 99 -~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~------~~~ 170 (595)
+.|+....+ ..|.++++ +++ ...
T Consensus 81 ~~~l~s~~~d-------------------------------------------------g~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTSFS-------------------------------------------------GDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEETT-------------------------------------------------SCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEcCC-------------------------------------------------CCEEEEEccCCccccccccee
Confidence 877665211 12333333 222 333
Q ss_pred cCCC------CeeeeeEEC----CCCCe-EEEEEcccCccccccCcccceeEEEEcCCC------ce-EE-----Eecc-
Q 007620 171 FGTP------AVYTAVEPS----PDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDG------KL-VR-----ELCD- 226 (595)
Q Consensus 171 lt~~------~~~~~~~~S----pDg~~-l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g------~~-~~-----~l~~- 226 (595)
+... ..+..++|+ |+++. |+..... ..+.+||+.. ++ .. .+..
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcEEEEeCCccccccccceeeccCcceeeee
Confidence 3322 345688999 99999 7666532 3677888765 32 11 2210
Q ss_pred CCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccc---c---Cc
Q 007620 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK---L---DL 299 (595)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~---~---~~ 299 (595)
.... .........+.|+|++ .++.. .....+.++++ ..++... +.. . ..
T Consensus 179 ~~~~-------~~~~~~i~~~~~~~~~--~l~~~------------~~dg~i~i~d~---~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 179 VESP-------MTPSQFATSVDISERG--LIATG------------FNNGTVQISEL---STLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp ECCS-------SSSCCCCCEEEECTTS--EEEEE------------CTTSEEEEEET---TTTEEEEEEECCC---CCCC
T ss_pred eccc-------cCCCCCceEEEECCCc--eEEEE------------eCCCcEEEEEC---CCCceeEEEeccccccccCC
Confidence 0000 0001123468899998 24332 12346777776 3233332 222 2 55
Q ss_pred cccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecc------------cccccCCCCCCCeeeCCCCCEE
Q 007620 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV------------FENVYSDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~dg~~l 367 (595)
.+..+.|+|++..|+..... .....|.++|+.++ +....+... -... ...+.|+++|+.|
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l 306 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETL 306 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEE
T ss_pred ccceEEECCCCCEEEEEecC-CCCceEEEEECCCC--cccceeccCcccccccccccccCCc-----EEEEEECCCCCEE
Confidence 67789999999887665321 11137888898773 322222210 0000 0127899999987
Q ss_pred EEEe
Q 007620 368 IAKI 371 (595)
Q Consensus 368 ~~~~ 371 (595)
+...
T Consensus 307 ~~~~ 310 (397)
T 1sq9_A 307 CSAG 310 (397)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.6e-06 Score=83.40 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=111.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC---CcEEEEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN---STLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd---g~~l~~~~~~~ 108 (595)
.+...+|||||++++.+...+ .....|.++++.+++...+..... ...+..+.|+|+ |+.|+....+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~------~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~d- 89 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA------RGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFG- 89 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETT-
T ss_pred ceEEEEEcCCCceEEEecCcc------CCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecCC-
Confidence 588999999999888766421 124678888988887654432211 125678999998 5776664211
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC--eeecCC-CCeeeee----
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGT-PAVYTAV---- 180 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~--~~~lt~-~~~~~~~---- 180 (595)
..|.++++ +++ ...+.. ...+..+
T Consensus 90 ------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 90 ------------------------------------------------GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ------------------------------------------------SCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred ------------------------------------------------CeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 12334444 222 222221 1222333
Q ss_pred --EECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce--EEEeccCCCCccCCccccccccCCCCce----eecC
Q 007620 181 --EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSIS----WRAD 252 (595)
Q Consensus 181 --~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~----wspd 252 (595)
+|+||++.|+..... ..+.+||+..+. ...+........ .....+. |+|+
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGENK---------RDCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSCC---------CCEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCCC---------CceEEEEEEeccCCC
Confidence 678999998877542 368899987553 344332211000 0011233 7788
Q ss_pred CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecC---CCcEEEEEEeecccceEEEEE
Q 007620 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD---DSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 253 g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wsp---Dg~~l~~~~~~~~~~~~L~~~ 329 (595)
+.. ++.. .....+.+++. ..++..........+..+.|+| ++..++... .++ .|.++
T Consensus 180 ~~~-l~~~------------~~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg--~i~i~ 239 (357)
T 3i2n_A 180 ERV-VCAG------------YDNGDIKLFDL---RNMALRWETNIKNGVCSLEFDRKDISMNKLVATS--LEG--KFHVF 239 (357)
T ss_dssp CCE-EEEE------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE--STT--EEEEE
T ss_pred CCE-EEEE------------ccCCeEEEEEC---ccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC--CCC--eEEEE
Confidence 873 3222 11246777786 4334443444455678899999 888776653 224 45566
Q ss_pred eCCC
Q 007620 330 CPGS 333 (595)
Q Consensus 330 d~~~ 333 (595)
|+.+
T Consensus 240 d~~~ 243 (357)
T 3i2n_A 240 DMRT 243 (357)
T ss_dssp EEEE
T ss_pred eCcC
Confidence 6655
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-06 Score=82.46 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=38.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||++||..+. ++...|| ++..+....+..... ....+..+.|+|||+.|+..
T Consensus 63 ~v~~~~~sp~g~~l~s~s~--------D~~v~iw--~~~~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~ 123 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASF--------DATTCIW--KKNQDDFECVTTLEG--HENEVKSVAWAPSGNLLATC 123 (345)
T ss_dssp CEEEEEECTTSSEEEEEET--------TSCEEEE--EECCC-EEEEEEECC--CSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEEECCCCCEEEEEEC--------CCcEEEE--EccCCCeEEEEEccC--CCCCceEEEEeCCCCEEEEE
Confidence 5788999999998877653 3445555 555554322221111 01146789999999988775
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-05 Score=78.75 Aligned_cols=201 Identities=12% Similarity=0.196 Sum_probs=115.8
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
..|+++++.+++...+..... ...+..+.|+|||+.|+....+
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~~d---------------------------------- 155 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDE---STYVASVKWSHDGSFLSVGLGN---------------------------------- 155 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCT---TCCEEEEEECTTSSEEEEEETT----------------------------------
T ss_pred CeEEEeeCCCCcEeEeeecCC---CCCEEEEEECCCCCEEEEECCC----------------------------------
Confidence 568888999998766654422 1256789999999988775211
Q ss_pred ccCcCCccceEEeecceEEEEcC-CCC-eeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD- 217 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~- 217 (595)
..|.++++ +++ .+.+.. ...+..++| +++.|+.... ...+.+||+.
T Consensus 156 ---------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~ 205 (401)
T 4aez_A 156 ---------------GLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-------------SGAIHHHDVRI 205 (401)
T ss_dssp ---------------SCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET-------------TSEEEEEETTS
T ss_pred ---------------CeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC-------------CCCEEEEeccc
Confidence 23444555 333 233322 234456777 5566665543 2378899987
Q ss_pred Cc-eEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecc
Q 007620 218 GK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH 295 (595)
Q Consensus 218 g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~ 295 (595)
++ ....+.... .....+.|+|++.. ++.. .....+.++|+ ..++.. .+.
T Consensus 206 ~~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~s~------------~~d~~v~iwd~---~~~~~~~~~~ 256 (401)
T 4aez_A 206 ANHQIGTLQGHS-------------SEVCGLAWRSDGLQ-LASG------------GNDNVVQIWDA---RSSIPKFTKT 256 (401)
T ss_dssp SSCEEEEEECCS-------------SCEEEEEECTTSSE-EEEE------------ETTSCEEEEET---TCSSEEEEEC
T ss_pred CcceeeEEcCCC-------------CCeeEEEEcCCCCE-EEEE------------eCCCeEEEccC---CCCCccEEec
Confidence 33 333332221 11346889999873 3322 11235677786 323333 333
Q ss_pred ccCccccceeecCCCcEEEEEEe-ecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 296 KLDLRFRSVSWCDDSLALVNETW-YKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 296 ~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.....+..+.|+|++..++.... ..++ .|.++|+.++ +....+. ..+.. +.|+++|+.++...
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~--~i~i~d~~~~--~~~~~~~~~~~v~~---------~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDK--QIHFWNAATG--ARVNTVDAGSQVTS---------LIWSPHSKEIMSTH 322 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTC--EEEEEETTTC--CEEEEEECSSCEEE---------EEECSSSSEEEEEE
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCC--EEEEEECCCC--CEEEEEeCCCcEEE---------EEECCCCCeEEEEe
Confidence 44556788999998865444321 1123 6888888773 3332222 22333 88999999887754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.6e-06 Score=95.97 Aligned_cols=214 Identities=7% Similarity=0.032 Sum_probs=115.4
Q ss_pred eeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +|+.. .+.. ....+....|+|+++...+++.. ....|.++|+.+++.........
T Consensus 680 ~v~vwd~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~sg~--------~d~~v~vwd~~~~~~~~~~~~h~-- 743 (1249)
T 3sfz_A 680 KVKIWDSA----TGKLVHTYDE--HSEQVNCCHFTNKSNHLLLATGS--------NDFFLKLWDLNQKECRNTMFGHT-- 743 (1249)
T ss_dssp EEEEEETT----TCCEEEEEEC--CSSCEEEEEECSSSSCCEEEEEE--------TTSCEEEEETTSSSEEEEECCCS--
T ss_pred eEEEEECC----CCceEEEEcC--CCCcEEEEEEecCCCceEEEEEe--------CCCeEEEEECCCcchhheecCCC--
Confidence 47888887 55543 3442 23358889999976654443332 23557777998887544332221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
..+..+.|+|||+.|+....+ |. .+.|.- . ....+..+..
T Consensus 744 --~~v~~~~~sp~~~~l~s~s~d----------------------g~---v~vwd~--~-----------~~~~~~~~~~ 783 (1249)
T 3sfz_A 744 --NSVNHCRFSPDDELLASCSAD----------------------GT---LRLWDV--R-----------SANERKSINV 783 (1249)
T ss_dssp --SCEEEEEECSSTTEEEEEESS----------------------SE---EEEEEG--G-----------GTEEEEEEEC
T ss_pred --CCEEEEEEecCCCEEEEEECC----------------------Ce---EEEEeC--C-----------CCcccceecc
Confidence 156789999999988775321 10 001100 0 0001111111
Q ss_pred CC-Cee---ec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccc
Q 007620 165 DG-TAK---DF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYN 238 (595)
Q Consensus 165 ~g-~~~---~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~ 238 (595)
.. ... .. ........++|||||+.|++... ..+.+||+.++.. ..+....
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--------------~~v~~~d~~~~~~~~~~~~~~---------- 839 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--------------NKVLLFDIHTSGLLAEIHTGH---------- 839 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEET--------------TEEEEEETTTCCEEEEEECSS----------
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcC--------------CcEEEEEecCCCceeEEcCCC----------
Confidence 00 000 00 00113457899999999988762 2688999875543 3332110
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEEE
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
......+.|+|++.. ++.. .....+.+++. ..+.. ..+......+..+.|+|||..++...
T Consensus 840 --~~~v~~~~~sp~~~~-l~~~------------~~dg~v~vwd~---~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 840 --HSTIQYCDFSPYDHL-AVIA------------LSQYCVELWNI---DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp --SSCCCEEEECSSTTE-EEEE------------CSSSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --CCceEEEEEcCCCCE-EEEE------------eCCCeEEEEEc---CCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence 012346789999883 3222 12235666675 32222 22333445677899999998877654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-05 Score=78.39 Aligned_cols=92 Identities=13% Similarity=-0.123 Sum_probs=52.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC-Ccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~-~~~ 84 (595)
.+++.|+. +++... .++.+... .+.+||||++|++................|.++|+++++...-.... ...
T Consensus 48 ~v~v~D~~----t~~~~~--~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAG----SGSILG--HVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECC----CCeEEE--EecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 34666776 555432 24455444 99999999998776431100000012356889999877643321111 000
Q ss_pred c--cccccceEEecCCcEEEEE
Q 007620 85 L--NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~--~~~~~~~~Wspdg~~l~~~ 104 (595)
. ......+.|||||++|++.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~ 142 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred cccCCCccceEECCCCCEEEEE
Confidence 0 0013478999999999886
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-05 Score=77.91 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=132.5
Q ss_pred CCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
+.+.+.+.. .......|.|+|||+.|+|+... ...|++++++++ .+.+..... ....+.+++|
T Consensus 17 ~~~~~~l~~--~~~~~eg~~~d~~g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~~~-----~~~~l~~~~d 79 (296)
T 3e5z_A 17 GAEARRLAD--GFTWTEGPVYVPARSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHPSH-----HQNGHCLNKQ 79 (296)
T ss_dssp TCCCEEEEC--CCSSEEEEEEEGGGTEEEEEEGG---------GTEEEEEETTSC-EEEEESSCS-----SEEEEEECTT
T ss_pred CCcEEEEec--CCccccCCeEeCCCCEEEEEeCC---------CCEEEEEECCCC-eEEEECCCC-----CcceeeECCC
Confidence 455566663 23346789999999988887643 468999999888 655543222 3557899999
Q ss_pred CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC--
Q 007620 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-- 174 (595)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-- 174 (595)
|++++... ....|++++. +|+.+.+...
T Consensus 80 g~l~v~~~-------------------------------------------------~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 80 GHLIACSH-------------------------------------------------GLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp CCEEEEET-------------------------------------------------TTTEEEEECSTTCCEEEEECEET
T ss_pred CcEEEEec-------------------------------------------------CCCeEEEEcCCCCcEEEEeeccC
Confidence 98544320 0134666777 6665544221
Q ss_pred ----CeeeeeEECCCCCeEEEEEcc----cCccccc-cCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCC
Q 007620 175 ----AVYTAVEPSPDQKYVLITSMH----RPYSYKV-PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (595)
Q Consensus 175 ----~~~~~~~~SpDg~~l~~~~~~----~~~~~~~-~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (595)
.....++++|||+ |+++... ....... ........|+.++.. ++.+.+.... ....
T Consensus 111 ~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~ 175 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKPN 175 (296)
T ss_dssp TEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSEE
T ss_pred CCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCCc
Confidence 1224688999997 4454210 0000000 000012378888887 4444432211 1123
Q ss_pred CceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc---eeccc-cCccccceeecCCCcEEEEEEeecc
Q 007620 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHK-LDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 246 ~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~---~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
.+.|+|||+. + +. + .....+++++. ...|+. ..+.. .......+.+++||..++..
T Consensus 176 gi~~s~dg~~-l-v~---~--------~~~~~i~~~~~--~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----- 235 (296)
T 3e5z_A 176 GLAFLPSGNL-L-VS---D--------TGDNATHRYCL--NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----- 235 (296)
T ss_dssp EEEECTTSCE-E-EE---E--------TTTTEEEEEEE--CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-----
T ss_pred cEEECCCCCE-E-EE---e--------CCCCeEEEEEE--CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-----
Confidence 5789999983 3 33 1 11235666664 112343 12221 12234568899999865554
Q ss_pred cceEEEEEeCCCCCCCcEEEe-ecccccccCCCCCCCeee-CCCCCEEEEEe
Q 007620 322 SQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTR-TSTGTNVIAKI 371 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~ 371 (595)
...|+++++++ .....+. ...+.. +.+ +++++.|++..
T Consensus 236 -~~~v~~~~~~g--~~~~~~~~~~~~~~---------~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 236 -GDGVHVLTPDG--DELGRVLTPQTTSN---------LCFGGPEGRTLYMTV 275 (296)
T ss_dssp -TTEEEEECTTS--CEEEEEECSSCCCE---------EEEESTTSCEEEEEE
T ss_pred -CCeEEEECCCC--CEEEEEECCCCcee---------EEEECCCCCEEEEEc
Confidence 12789999875 2222221 111222 566 57888888775
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-06 Score=84.14 Aligned_cols=200 Identities=18% Similarity=0.162 Sum_probs=113.0
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
+...+|||||++||.... ...|.++|+.+++......... ..+..+.|+|+++.|+....+
T Consensus 126 v~~v~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~s~d----- 186 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE----------DRLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGSGD----- 186 (393)
T ss_dssp EEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEECCCCCEEEEEcC----------CCeEEEEECCCCcEEEEEccCC----CCEEEEEEcCCCCEEEEecCC-----
Confidence 667899999999876542 2457777998887654433221 146789999999988764211
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecCCCCeeeeeEECC-CCCeE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSP-DQKYV 189 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt~~~~~~~~~~Sp-Dg~~l 189 (595)
..+.++|+ +++. ..+........++|+| ||+.|
T Consensus 187 --------------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 187 --------------------------------------------RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp --------------------------------------------SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred --------------------------------------------CcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 23444455 3432 2232333456789999 88888
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
+....+ ..+.+||+.++.. ..+...... ..+.......+.|+|||+. |+..
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~~g~~-l~s~-------- 274 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSENES------GTGHKDSVYSVVFTRDGQS-VVSG-------- 274 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSE-EEEE--------
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeecccccC------CCCCCCCEEEEEECCCCCE-EEEE--------
Confidence 777542 3688999876543 333211000 0011112345789999873 3221
Q ss_pred ccccCCcceEEeccCCCCCCCC------------c-eeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEK------------P-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~------------~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.....+.+||+ .... . ..+......+..+.|+|++..|+... .++ .|.++|+.++
T Consensus 275 ----s~d~~v~~wd~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~--~v~iwd~~~~ 342 (393)
T 1erj_A 275 ----SLDRSVKLWNL---QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDR--GVLFWDKKSG 342 (393)
T ss_dssp ----ETTSEEEEEEC------------------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTS--EEEEEETTTC
T ss_pred ----eCCCEEEEEEC---CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe--CCC--eEEEEECCCC
Confidence 11234555564 2111 0 11222233456788999998877654 223 5777788773
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-05 Score=87.81 Aligned_cols=228 Identities=13% Similarity=0.079 Sum_probs=129.1
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc------eEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~------~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
.+...+|+|++..+.++... ++ .|.++++..+. .+.++.... .+..+.|+|||+.|+...
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~-------D~--~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASR-------DK--SIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEEET-------TS--EEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred eeEEEEecCCCCCEEEEEeC-------CC--cEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEe
Confidence 48888999988666666543 33 44455665422 233433332 467899999999887652
Q ss_pred cCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecC-CCCeeeeeEE
Q 007620 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEP 182 (595)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt-~~~~~~~~~~ 182 (595)
. ...|.++|+ ++. .+.+. ....+..++|
T Consensus 450 ~-------------------------------------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 W-------------------------------------------------DGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp T-------------------------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred C-------------------------------------------------CCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 1 123445555 442 23332 3345668999
Q ss_pred CCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 183 SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
||||++|+..+.+ ..|.+||+.+.....+..... ++......+.|+|++...+... .
T Consensus 481 s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s-~ 537 (694)
T 3dm0_A 481 SLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGE---------GHRDWVSCVRFSPNTLQPTIVS-A 537 (694)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTT---------SCSSCEEEEEECSCSSSCEEEE-E
T ss_pred eCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCC---------CCCCcEEEEEEeCCCCcceEEE-E
Confidence 9999998877642 368899987766555432210 0111123577888874322222 1
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
.....+.++|+ ..++.. .+......+..+.|+|||..|+... .++ .|.++|+.++ +.+
T Consensus 538 ----------s~d~~v~vwd~---~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~--~Dg--~i~iwd~~~~----~~~ 596 (694)
T 3dm0_A 538 ----------SWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDG--VVLLWDLAEG----KKL 596 (694)
T ss_dssp ----------ETTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--BCEEEETTTT----EEE
T ss_pred ----------eCCCeEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCC--eEEEEECCCC----ceE
Confidence 11235667776 333333 3434455678899999999877654 234 4556677663 233
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
......... ..+.|+|++..+....
T Consensus 597 ~~~~~~~~v-----~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 597 YSLEANSVI-----HALCFSPNRYWLCAAT 621 (694)
T ss_dssp ECCBCSSCE-----EEEEECSSSSEEEEEE
T ss_pred EEecCCCcE-----EEEEEcCCCcEEEEEc
Confidence 211111101 1278999998766543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-05 Score=79.41 Aligned_cols=305 Identities=14% Similarity=0.104 Sum_probs=151.4
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCc
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~ 115 (595)
....|||++|+ +.+.... .....|+++|.++++...-..... ... +..||||+.|++.....
T Consensus 38 ~~~~pd~~~vy-V~~~~~~----~~~~~V~ViD~~t~~v~~~I~vG~-----~P~-va~spDG~~lyVan~~~------- 99 (386)
T 3sjl_D 38 EAPAPDARRVY-VNDPAHF----AAVTQQFVIDGEAGRVIGMIDGGF-----LPN-PVVADDGSFIAHASTVF------- 99 (386)
T ss_dssp CCCCCCTTEEE-EEECGGG----CSSEEEEEEETTTTEEEEEEEECS-----SCE-EEECTTSSCEEEEEEEE-------
T ss_pred eccCCCCCEEE-EEcCccc----CCCCEEEEEECCCCeEEEEEECCC-----CCc-EEECCCCCEEEEEcccc-------
Confidence 34479999864 4442100 124789999999887543322121 234 89999999988852100
Q ss_pred cccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eec--CC------CCeeeeeEECCC
Q 007620 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDF--GT------PAVYTAVEPSPD 185 (595)
Q Consensus 116 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~l--t~------~~~~~~~~~SpD 185 (595)
.. + . +.+ ....|.++|. ++++ ..| .. ...-..+.+|||
T Consensus 100 -----------~r-~-------~-------~G~------~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD 147 (386)
T 3sjl_D 100 -----------SR-I-------A-------RGE------RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 147 (386)
T ss_dssp -----------EE-T-------T-------EEE------EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred -----------cc-c-------c-------cCC------CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence 00 0 0 000 1346788888 5543 233 21 012346899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCC-CceeecCCCeeEEEEEee
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~-~~~wspdg~~~l~~~~~~ 263 (595)
|++|++.... + ...+.++|+.++++ ..+ ..+.... ....+.+ .+..++||+ ++++. .
T Consensus 148 Gk~lyVan~~-~----------~~~VsVID~~t~~vv~tI-~v~g~~~------~~P~g~~~~~~~~~DG~--~~~v~-~ 206 (386)
T 3sjl_D 148 GKTLLFYQFS-P----------APAVGVVDLEGKAFKRML-DVPDCYH------IFPTAPDTFFMHCRDGS--LAKVA-F 206 (386)
T ss_dssp SSEEEEEECS-S----------SCEEEEEETTTTEEEEEE-ECCSEEE------EEEEETTEEEEEETTSC--EEEEE-C
T ss_pred CCEEEEEEcC-C----------CCeEEEEECCCCcEEEEE-ECCCcce------eecCCCceeEEECCCCC--EEEEE-C
Confidence 9999887432 1 23789999987765 333 2111000 0001111 134567765 33331 1
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCce----eccc--cCccccceeec-CCCcEEEEEEeecccceEEEEEeCCCCCC
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPE----ILHK--LDLRFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~~----~l~~--~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~L~~~d~~~~~~ 336 (595)
+. . ++.. .+.. ....+..+.|. +||+.+ |... .+ .++.+|+.+.
T Consensus 207 ~~---------------------~-g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~--~g--~V~v~d~~~~-- 257 (386)
T 3sjl_D 207 GT---------------------E-GTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTY--TG--KIHQIDLSSG-- 257 (386)
T ss_dssp CS---------------------S-SCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBT--TS--EEEEEECTTS--
T ss_pred CC---------------------C-CeEEEeecceeccccccccccceeEcCCCcEE-EEeC--CC--EEEEEECCCC--
Confidence 10 0 1110 0111 11122345674 678643 3321 23 7999999873
Q ss_pred CcEEEeeccc-c----cccCCCC-CCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeee
Q 007620 337 APRVLFDRVF-E----NVYSDPG-SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (595)
Q Consensus 337 ~~~~l~~~~~-~----~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (595)
..+.+-..++ . ..-..|+ ...+..+++++.+|+.....+ .+ +....-..+..+|+++++..+-
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~----------~~-~hk~~~~~V~viD~~t~kv~~~ 326 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD----------EW-RHKTASRFVVVLDAKTGERLAK 326 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC----------TT-CTTSCEEEEEEEETTTCCEEEE
T ss_pred cceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc----------cc-ccCCCCCEEEEEECCCCeEEEE
Confidence 3333311110 0 0000122 234667788888887653211 00 0011111244689988886554
Q ss_pred eecCccccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCcee
Q 007620 411 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (595)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~ 465 (595)
+... ..+. +..+++|++.++|... .....+.++|..+++..
T Consensus 327 i~vg-----~~~~-------~lavs~D~~~~ly~tn--~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 327 FEMG-----HEID-------SINVSQDEKPLLYALS--TGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEE-----EEEC-------EEEECSSSSCEEEEEE--TTTTEEEEEETTTCCEE
T ss_pred EECC-----CCcc-------eEEECCCCCeEEEEEc--CCCCeEEEEECCCCcEE
Confidence 3221 1111 1457889874444432 33577999998877653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=87.08 Aligned_cols=249 Identities=13% Similarity=0.037 Sum_probs=134.3
Q ss_pred eeEEEecCCCCCCCC----ceeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCc-------
Q 007620 6 GIGIHRLLPDDSLGP----EKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------- 73 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~----~~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~------- 73 (595)
.|.|+++.. .++ ...+.+ ....+....|+| +++.||.... + ..|.++++.++.
T Consensus 58 ~i~v~~~~~---~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~~l~s~s~--------d--g~v~vw~~~~~~~~~~~~~ 122 (402)
T 2aq5_A 58 AFLVLPLGK---TGRVDKNVPLVCG--HTAPVLDIAWCPHNDNVIASGSE--------D--CTVMVWEIPDGGLVLPLRE 122 (402)
T ss_dssp CEEEEETTC---CEECCTTCCCBCC--CSSCEEEEEECTTCTTEEEEEET--------T--SEEEEEECCTTCCSSCBCS
T ss_pred EEEEEECcc---CCCCCCCCceEec--CCCCEEEEEeCCCCCCEEEEEeC--------C--CeEEEEEccCCCCccccCC
Confidence 577888852 322 122332 223588999999 8887766542 2 456666877663
Q ss_pred -eEecccCCCccccccccceEEecCCc-EEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccce
Q 007620 74 -AKPLFESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (595)
Q Consensus 74 -~~~lt~~~~~~~~~~~~~~~Wspdg~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (595)
...+..... .+..+.|+|+++ .|+....
T Consensus 123 ~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~--------------------------------------------- 152 (402)
T 2aq5_A 123 PVITLEGHTK-----RVGIVAWHPTAQNVLLSAGC--------------------------------------------- 152 (402)
T ss_dssp CSEEEECCSS-----CEEEEEECSSBTTEEEEEET---------------------------------------------
T ss_pred ceEEecCCCC-----eEEEEEECcCCCCEEEEEcC---------------------------------------------
Confidence 223322222 567899999995 4444311
Q ss_pred EEeecceEEEEcC-CCC-eeec--C-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEe-
Q 007620 152 DYYTTAQLVLGSL-DGT-AKDF--G-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-REL- 224 (595)
Q Consensus 152 ~~~~~~~l~~~d~-~g~-~~~l--t-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l- 224 (595)
...|.++|+ +++ ...+ . ....+..++|+|||+.|+....+ ..|.+||+.+++. ..+
T Consensus 153 ----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 153 ----DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp ----TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEE
T ss_pred ----CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeec
Confidence 123555666 443 3334 2 23456789999999999887642 3789999886654 333
Q ss_pred ccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCcccc
Q 007620 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFR 302 (595)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~ 302 (595)
..... .....+.|+||++ ++...+.. .....+.++|+ ..+..+..+. .....+.
T Consensus 216 ~~~~~------------~~~~~~~~~~~~~--~l~~g~~~--------~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 216 RPHEG------------TRPVHAVFVSEGK--ILTTGFSR--------MSERQVALWDT--KHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp CSSCS------------SSCCEEEECSTTE--EEEEEECT--------TCCEEEEEEET--TBCSSCSEEEECCCCSSCE
T ss_pred cCCCC------------CcceEEEEcCCCc--EEEEeccC--------CCCceEEEEcC--ccccCCceEEeccCCCcee
Confidence 11110 0123578999976 22221100 12346777776 2222222222 2334567
Q ss_pred ceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEE
Q 007620 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (595)
Q Consensus 303 ~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~ 368 (595)
.+.|+||+..++.... .++ .|.++|+.+++.....+......... ..+.|+|+|..++
T Consensus 272 ~~~~s~~~~~l~~~g~-~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v-----~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGK-GDS--SIRYFEITSEAPFLHYLSMFSSKESQ-----RGMGYMPKRGLEV 329 (402)
T ss_dssp EEEEETTTTEEEEEET-TCS--CEEEEEECSSTTCEEEEEEECCSSCC-----SEEEECCGGGSCG
T ss_pred EEEEcCCCCEEEEEEc-CCC--eEEEEEecCCCcceEeecccccCCcc-----cceEEecccccce
Confidence 8899999987654421 223 45566666631112333222111111 1278888887543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.8e-06 Score=85.19 Aligned_cols=125 Identities=7% Similarity=0.084 Sum_probs=64.8
Q ss_pred eeeeeEECCCC-CeEEEEEcccCccccccCcccceeEEEEcCCCceE-----EEeccCCCCccCCccccccccCCCCcee
Q 007620 176 VYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-----RELCDLPPAEDIPVCYNSVREGMRSISW 249 (595)
Q Consensus 176 ~~~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~w 249 (595)
.+..++|+|+| +.|+....+ ..|.+||+.++.. +.+.......... .+.+.......+.|
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 293 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDPSNRS-FFSEIISSISDVKF 293 (447)
T ss_dssp CEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC-----CC-HHHHHTTCEEEEEE
T ss_pred ceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCccccc-cccccCceEEEEEE
Confidence 45689999999 666666532 3688999876553 3332211000000 00000002346889
Q ss_pred ecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCcc---------------ccceeecCCCcEE
Q 007620 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLR---------------FRSVSWCDDSLAL 313 (595)
Q Consensus 250 spdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~---------------~~~~~wspDg~~l 313 (595)
+|+|+. |+.. .. ..+.++|+ ...++.. .+...... ...+.|+||+..|
T Consensus 294 s~~g~~-l~~~------------~~-~~v~iwd~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l 357 (447)
T 3dw8_B 294 SHSGRY-MMTR------------DY-LSVKVWDL--NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357 (447)
T ss_dssp CTTSSE-EEEE------------ES-SEEEEEET--TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred CCCCCE-EEEe------------eC-CeEEEEeC--CCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence 999884 3221 11 45677775 1112322 22211110 1238999999987
Q ss_pred EEEEeecccceEEEEEeCCCC
Q 007620 314 VNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 314 ~~~~~~~~~~~~L~~~d~~~~ 334 (595)
+... .++ .|+++|+.++
T Consensus 358 ~s~s--~dg--~v~iwd~~~~ 374 (447)
T 3dw8_B 358 MTGS--YNN--FFRMFDRNTK 374 (447)
T ss_dssp EEEC--STT--EEEEEETTTC
T ss_pred EEec--cCC--EEEEEEcCCC
Confidence 6653 223 6777788773
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-06 Score=80.81 Aligned_cols=230 Identities=8% Similarity=0.011 Sum_probs=126.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
...|.|+|+++.|+|+-. ....|+++++++++.+.+.. .. .+..+.+++||++++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~~~~~-~~-----~~~~i~~~~dG~l~v~~-------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDI---------PAKKVCRWDSFTKQVQRVTM-DA-----PVSSVALRQSGGYVATI-------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEET---------TTTEEEEEETTTCCEEEEEC-SS-----CEEEEEEBTTSSEEEEE--------
T ss_pred ccCCeEECCCCEEEEEEC---------CCCEEEEEECCCCcEEEEeC-CC-----ceEEEEECCCCCEEEEE--------
Confidence 447999999999988753 34789999999887654422 22 45688999999943322
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCC-----C-CeeeeeEECCC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-----P-AVYTAVEPSPD 185 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~-----~-~~~~~~~~SpD 185 (595)
...|++++. +++.+.+.. + .....+.++||
T Consensus 72 -------------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d 108 (297)
T 3g4e_A 72 -------------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA 108 (297)
T ss_dssp -------------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT
T ss_pred -------------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC
Confidence 123555555 344433321 1 12457899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+ |++.......... ........|+.++.++.......... ....+.|+||++. ||+...
T Consensus 109 G~-l~~~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~~~~~~~--------------~pngi~~spdg~~-lyv~~~--- 168 (297)
T 3g4e_A 109 GR-YFAGTMAEETAPA-VLERHQGALYSLFPDHHVKKYFDQVD--------------ISNGLDWSLDHKI-FYYIDS--- 168 (297)
T ss_dssp SC-EEEEEEECCSBTT-BCCTTCEEEEEECTTSCEEEEEEEES--------------BEEEEEECTTSCE-EEEEEG---
T ss_pred CC-EEEecCCcccccc-cccCCCcEEEEEECCCCEEEEeeccc--------------cccceEEcCCCCE-EEEecC---
Confidence 98 5555432210000 00011347888887754433322110 1235889999973 665521
Q ss_pred CCcccccCCcceEEeccCCCCCCCCce---eccc---cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcE
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~ 339 (595)
....+++++.++.+ |... .+.. ..+....+.+.++|..++... ....|+++|++++ +..
T Consensus 169 --------~~~~i~~~~~d~~~-G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~----~~~~v~~~d~~tG--~~~ 233 (297)
T 3g4e_A 169 --------LSYSVDAFDYDLQT-GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY----NGGRVIRLDPVTG--KRL 233 (297)
T ss_dssp --------GGTEEEEEEECTTT-CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----TTTEEEEECTTTC--CEE
T ss_pred --------CCCcEEEEeccCCC-CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----CCCEEEEEcCCCc--eEE
Confidence 12345555531123 2321 1221 123345677888887655542 1236999999863 222
Q ss_pred EEee---cccccccCCCCCCCeeeC-CCCCEEEEEee
Q 007620 340 VLFD---RVFENVYSDPGSPMMTRT-STGTNVIAKIK 372 (595)
Q Consensus 340 ~l~~---~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~ 372 (595)
.... ..+.. +.+. +|++.||++..
T Consensus 234 ~~i~~p~~~~t~---------~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVDKTTS---------CCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSSBEEE---------EEEESGGGCEEEEEEB
T ss_pred EEEECCCCCceE---------EEEeCCCCCEEEEEcC
Confidence 2221 12222 6676 78888887764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-05 Score=80.62 Aligned_cols=322 Identities=10% Similarity=-0.005 Sum_probs=161.6
Q ss_pred eeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECC--CCce-EecccCC
Q 007620 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~-~~lt~~~ 81 (595)
.|++.|+. +++.. .|. .+.....+.+||||++|+. ..+ ...|.++|+. +++. .++ .
T Consensus 178 ~V~viD~~----t~~v~~~i~---~g~~p~~v~~SpDGr~lyv-~~~---------dg~V~viD~~~~t~~~v~~i---~ 237 (567)
T 1qks_A 178 QIALIDGS----TYEIKTVLD---TGYAVHISRLSASGRYLFV-IGR---------DGKVNMIDLWMKEPTTVAEI---K 237 (567)
T ss_dssp EEEEEETT----TCCEEEEEE---CSSCEEEEEECTTSCEEEE-EET---------TSEEEEEETTSSSCCEEEEE---E
T ss_pred eEEEEECC----CCeEEEEEe---CCCCccceEECCCCCEEEE-EcC---------CCeEEEEECCCCCCcEeEEE---e
Confidence 46777776 55544 333 3334668999999998654 432 2479999995 5543 222 1
Q ss_pred CccccccccceEEe----cCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecc
Q 007620 82 DICLNAVFGSFVWV----NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (595)
Q Consensus 82 ~~~~~~~~~~~~Ws----pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (595)
.+ .....+.+| |||++|++... ...
T Consensus 238 ~G---~~P~~ia~s~~~~pDGk~l~v~n~------------------------------------------------~~~ 266 (567)
T 1qks_A 238 IG---SEARSIETSKMEGWEDKYAIAGAY------------------------------------------------WPP 266 (567)
T ss_dssp CC---SEEEEEEECCSTTCTTTEEEEEEE------------------------------------------------ETT
T ss_pred cC---CCCceeEEccccCCCCCEEEEEEc------------------------------------------------cCC
Confidence 11 123478899 69999887521 012
Q ss_pred eEEEEcC-CCCeee-cCC------------CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE
Q 007620 158 QLVLGSL-DGTAKD-FGT------------PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (595)
Q Consensus 158 ~l~~~d~-~g~~~~-lt~------------~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 223 (595)
++.++|. +.++.. +.. ......+..|+++..+++.... ...|+++|....+...
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~------------~g~v~~vd~~~~~~~~ 334 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLK 334 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC------------CCeEEEEecCCCccce
Confidence 3444454 223221 110 1123456778887766655421 3478888876543222
Q ss_pred eccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-C--cc
Q 007620 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-D--LR 300 (595)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-~--~~ 300 (595)
+...+.. .......|+|||+. ++.. . ...+.+.++|. ..++...+... . ..
T Consensus 335 v~~i~~~-----------~~~~d~~~~pdgr~-~~va-~----------~~sn~V~ViD~---~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 335 TTEISAE-----------RFLHDGGLDGSHRY-FITA-A----------NARNKLVVIDT---KEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp EEEEECC-----------SSEEEEEECTTSCE-EEEE-E----------GGGTEEEEEET---TTTEEEEEEECSSSSBC
T ss_pred eeeeecc-----------ccccCceECCCCCE-EEEE-e----------CCCCeEEEEEC---CCCcEEEEEeccCcCCC
Confidence 2221110 11235679999984 3332 1 22356777886 33344332222 1 11
Q ss_pred c-cceee-cCCCcEEEEEEeecccceEEEEEeCCCCCC---CcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecC
Q 007620 301 F-RSVSW-CDDSLALVNETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (595)
Q Consensus 301 ~-~~~~w-spDg~~l~~~~~~~~~~~~L~~~d~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 375 (595)
. ..+.| .|++..+...... +...|-++|.++... ..+.+-.-.... .+..++..+|+|+.+|+...-..
T Consensus 389 pg~g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 389 PGRGANFVHPTFGPVWATSHM--GDDSVALIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp CTTCEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTTCS
T ss_pred CccceeeECCCCCcEEEeCCC--CCCeEEEecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCCCC
Confidence 1 23344 6775544333211 223688888776311 122221101100 12234667899999887652110
Q ss_pred Cc--ccEEEEecCCCCCCCCcceeEeeecCCC-----ce--eeeeecC---ccccceeeEEeeeCCCcccccccCCEEEE
Q 007620 376 DE--QIYILLNGRGFTPEGNIPFLDLFDINTG-----SK--ERIWESN---REKYFETAVALVFGQGEEDINLNQLKILT 443 (595)
Q Consensus 376 ~~--~~~l~~~~~g~~~~~~~~~l~~~d~~~g-----~~--~~l~~~~---~~~~~~~~~~~~~~~~~~~~s~d~~~l~~ 443 (595)
+. ...+ ..+|+++. +. +.|.... .+.....+. ...|+++|+.+++
T Consensus 463 ~~~~~~~v----------------~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~G~~~~~ 519 (567)
T 1qks_A 463 EAEISGSV----------------AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV-------QGEFNKDGTEVWF 519 (567)
T ss_dssp SHHHHTCE----------------EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE-------EEEECTTSSEEEE
T ss_pred CcccCceE----------------EEEECCcccccccCCCcEEeccccccccCCCCcceE-------eeeECCCCCEEEE
Confidence 00 1122 23455443 11 2221000 000001222 1468999999888
Q ss_pred EEe-cCCCcceEEEEeCCCCcee
Q 007620 444 SKE-SKTEITQYHILSWPLKKSS 465 (595)
Q Consensus 444 ~~~-s~~~p~~l~~~d~~~~~~~ 465 (595)
+.. .......|.++|.++.+++
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEEE
T ss_pred EeecCCCCCCcEEEEECCCceEE
Confidence 753 3335678999998776654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.5e-06 Score=81.09 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=125.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
...|.|+||++.|+|+... ...|+++++++++.+.+.. .. .+..+.|++||+.++.. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~-~~-----~v~~i~~~~dg~l~v~~-~------ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL---------ERELHELHLASGRKTVHAL-PF-----MGSALAKISDSKQLIAS-D------ 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG---------GTEEEEEETTTTEEEEEEC-SS-----CEEEEEEEETTEEEEEE-T------
T ss_pred CcCCeEeCCCCEEEEEECC---------CCEEEEEECCCCcEEEEEC-CC-----cceEEEEeCCCeEEEEE-C------
Confidence 4579999999999887532 4689999999887665532 22 46688999999865543 0
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC------CeeeeeEECCC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPD 185 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~------~~~~~~~~SpD 185 (595)
..|++++. +|+.+.+... .....+.++||
T Consensus 109 --------------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 144 (326)
T 2ghs_A 109 --------------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 144 (326)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred --------------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC
Confidence 12556666 4555444221 13457899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
|+ |++....... ......|++++ + ++.+.+.... .....+.|+|||+. +|+...
T Consensus 145 G~-l~v~~~~~~~------~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~-lyv~~~--- 198 (326)
T 2ghs_A 145 GA-LWIGTMGRKA------ETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTT-GYFVDT--- 198 (326)
T ss_dssp SC-EEEEEEETTC------CTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCE-EEEEET---
T ss_pred CC-EEEEeCCCcC------CCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCE-EEEEEC---
Confidence 98 4454432110 00134788888 4 5544442110 01235789999873 655421
Q ss_pred CCcccccCCcceEEeccCCCCCCC-Cc---eeccc---cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGE-KP---EILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~-~~---~~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
....+++++.++ .+| +. +.+.. ..+....+.+.++|..++... ....|+++|+++ ...
T Consensus 199 --------~~~~I~~~d~~~-~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~~d~~g--~~~ 263 (326)
T 2ghs_A 199 --------KVNRLMRVPLDA-RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDTDG--NHI 263 (326)
T ss_dssp --------TTCEEEEEEBCT-TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECTTC--CEE
T ss_pred --------CCCEEEEEEccc-ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEEECCCC--CEE
Confidence 123566666410 123 21 12211 122334567788887655432 123799999854 222
Q ss_pred EEEe--ecccccccCCCCCCCeeeC-CCCCEEEEEee
Q 007620 339 RVLF--DRVFENVYSDPGSPMMTRT-STGTNVIAKIK 372 (595)
Q Consensus 339 ~~l~--~~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~ 372 (595)
+.+. ...+.. +.++ ++++.||+...
T Consensus 264 ~~i~~~~~~~~~---------~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 264 ARYEVPGKQTTC---------PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEECSCSBEEE---------EEEESTTSCEEEEEEB
T ss_pred EEEECCCCCcEE---------EEEecCCCCEEEEEec
Confidence 2221 111222 6676 78888877654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-05 Score=78.47 Aligned_cols=212 Identities=13% Similarity=0.116 Sum_probs=112.4
Q ss_pred CCceeeecCCCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC---------cccccc
Q 007620 19 GPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD---------ICLNAV 88 (595)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~---------~~~~~~ 88 (595)
++.+.+.. .....+....||| ||+.||.... ...|.++++.+++......... ......
T Consensus 33 ~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 33 NKDRDVER-IHGGGINTLDIEPVEGRYMLSGGS----------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp CTTEEECC-CCSSCEEEEEECTTTCCEEEEEET----------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred Ccceeeee-ccCCcEEEEEEecCCCCEEEEEcC----------CCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 34444432 2333688999999 9998877653 2456677887765433321000 001124
Q ss_pred ccceEEec-CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CC
Q 007620 89 FGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (595)
Q Consensus 89 ~~~~~Wsp-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g 166 (595)
+..+.|+| +++.|+.... ...|.++++ ++
T Consensus 102 v~~~~~~~~~~~~l~s~~~-------------------------------------------------d~~i~iwd~~~~ 132 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSF-------------------------------------------------DKTLKVWDTNTL 132 (408)
T ss_dssp EEEEEECTTCTTCEEEEET-------------------------------------------------TSEEEEEETTTT
T ss_pred EEEEEEccCCCcEEEEEeC-------------------------------------------------CCeEEEeeCCCC
Confidence 67889999 5555555311 123555566 33
Q ss_pred Cee-ecCCCCeeeeeEECCCC---CeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccc
Q 007620 167 TAK-DFGTPAVYTAVEPSPDQ---KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 167 ~~~-~lt~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~ 241 (595)
+.. .+........+.|+|.+ ..|+.... ...+.+||+.++. ...+....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~d~~~~~~~~~~~~~~------------- 186 (408)
T 4a11_B 133 QTADVFNFEETVYSHHMSPVSTKHCLVAVGTR-------------GPKVQLCDLKSGSCSHILQGHR------------- 186 (408)
T ss_dssp EEEEEEECSSCEEEEEECSSCSSCCEEEEEES-------------SSSEEEEESSSSCCCEEECCCC-------------
T ss_pred ccceeccCCCceeeeEeecCCCCCcEEEEEcC-------------CCeEEEEeCCCcceeeeecCCC-------------
Confidence 322 22223334567777754 46665543 2368899987554 33332211
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCC-Cceec---------------cccCcccccee
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEIL---------------HKLDLRFRSVS 305 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~-~~~~l---------------~~~~~~~~~~~ 305 (595)
.....+.|+|+++..++.. .. ...+.++++ ..+. ....+ ......+..+.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~-~~-----------dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATA-SA-----------DSRVKLWDV--RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SCEEEEEECSSCTTEEEEE-ET-----------TSCEEEEET--TCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CcEEEEEECCCCCcEEEEE-cC-----------CCcEEEEEC--CCCCcccccccccccccceeeccccccccCceeEEE
Confidence 1134578999987423222 11 223455554 1110 11111 12234466789
Q ss_pred ecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 306 WCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 306 wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
|+||+..++... .++ .|.++|+.++
T Consensus 253 ~~~~~~~l~~~~--~dg--~i~vwd~~~~ 277 (408)
T 4a11_B 253 FTSDGLHLLTVG--TDN--RMRLWNSSNG 277 (408)
T ss_dssp ECTTSSEEEEEE--TTS--CEEEEETTTC
T ss_pred EcCCCCEEEEec--CCC--eEEEEECCCC
Confidence 999998877654 223 5777788774
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-05 Score=78.10 Aligned_cols=216 Identities=12% Similarity=0.124 Sum_probs=122.2
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. .++. ..+.. ....+....|+|+|+.|+.... ...|.++|+.+++.........
T Consensus 88 ~i~vwd~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~-- 149 (312)
T 4ery_A 88 TLKIWDVS----SGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSF----------DESVRIWDVKTGKCLKTLPAHS-- 149 (312)
T ss_dssp EEEEEETT----TCCEEEEEEC--CSSCEEEEEECSSSSEEEEEET----------TSCEEEEETTTCCEEEEECCCS--
T ss_pred EEEEEECC----CCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCEEEEEecCCC--
Confidence 47788887 4443 34442 2235778899999998876542 2457777998877543322211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
..+..+.|+|+++.|+.... ...|.++|+
T Consensus 150 --~~v~~~~~~~~~~~l~~~~~-------------------------------------------------d~~i~~wd~ 178 (312)
T 4ery_A 150 --DPVSAVHFNRDGSLIVSSSY-------------------------------------------------DGLCRIWDT 178 (312)
T ss_dssp --SCEEEEEECTTSSEEEEEET-------------------------------------------------TSCEEEEET
T ss_pred --CcEEEEEEcCCCCEEEEEeC-------------------------------------------------CCcEEEEEC
Confidence 14678999999998776521 123445555
Q ss_pred -CCC-eeecCC--CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCccccc
Q 007620 165 -DGT-AKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 165 -~g~-~~~lt~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~~~~~ 239 (595)
+++ ...+.. ......++|+|+|++|+..... ..+.+||+.+++.. .+......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~--------- 236 (312)
T 4ery_A 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-------------NTLKLWDYSKGKCLKTYTGHKNE--------- 236 (312)
T ss_dssp TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT-------------TEEEEEETTTTEEEEEECSSCCS---------
T ss_pred CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCcEEEEEEecCCc---------
Confidence 343 223322 1234578999999999877642 37889998866543 33221100
Q ss_pred cccCCCCceee-cCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEE
Q 007620 240 VREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 240 ~~~~~~~~~ws-pdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
.......++ +++. .|+.. .....+.++++ ..++.. .+......+..+.|+|++..++...
T Consensus 237 --~~~~~~~~~~~~~~-~l~sg------------~~dg~i~vwd~---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 237 --KYCIFANFSVTGGK-WIVSG------------SEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp --SSCCCEEEECSSSC-EEEEC------------CTTSCEEEEET---TTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred --eEEEEEEEEeCCCc-EEEEE------------CCCCEEEEEEC---CCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 000122333 3333 12111 12345777786 333332 3333444567889999998877654
Q ss_pred eecccceEEEEEe
Q 007620 318 WYKTSQTRTWLVC 330 (595)
Q Consensus 318 ~~~~~~~~L~~~d 330 (595)
...++..+||..|
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 3234555666543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-05 Score=82.21 Aligned_cols=249 Identities=14% Similarity=0.130 Sum_probs=136.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCC-CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|+|+|+. +|+..++..+.. ...+...+|||||++||..+. + ..|.++++.+++..+......
T Consensus 126 tV~lWd~~----tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~--------D--g~v~iWd~~~~~~~~~~~~h~-- 189 (420)
T 4gga_A 126 SVYLWSAS----SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS--------S--AEVQLWDVQQQKRLRNMTSHS-- 189 (420)
T ss_dssp EEEEEETT----TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET--------T--SCEEEEETTTTEEEEEECCCS--
T ss_pred EEEEEECC----CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC--------C--CeEEEEEcCCCcEEEEEeCCC--
Confidence 58899998 787776654433 235889999999999876543 2 446666888887544332211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
..+..+.| +++.|+....+ ..+.+.+.
T Consensus 190 --~~v~~~s~--~~~~l~sgs~d-------------------------------------------------~~i~~~d~ 216 (420)
T 4gga_A 190 --ARVGSLSW--NSYILSSGSRS-------------------------------------------------GHIHHHDV 216 (420)
T ss_dssp --SCEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEEEET
T ss_pred --CceEEEee--CCCEEEEEeCC-------------------------------------------------CceeEeee
Confidence 12334444 56665553211 11222332
Q ss_pred CC---CeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE--eccCCCCccCCcccc
Q 007620 165 DG---TAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIPVCYN 238 (595)
Q Consensus 165 ~g---~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--l~~~~~~~~~~~~~~ 238 (595)
.. ....+. .........|+|+|+.|+....+ ..+.+|+...++... +....
T Consensus 217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~~~~~---------- 273 (420)
T 4gga_A 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFT---------- 273 (420)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCSEEEC----------
T ss_pred cccceeeEEecccccceeeeeecCCCCeeeeeecc-------------ccceEEeeccccccceeeeeec----------
Confidence 11 111221 22344578999999998877643 257788876443111 10000
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEe
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (595)
........+.|+|++...++... . .....+.+||+ ..++...............|++++..++....
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~--g--------s~D~~I~iwd~---~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGG--G--------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEE--C--------TTTCEEEEEET---TTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred ccCCceeeeeeCCCcccEEEEEe--e--------cCCCEEEEEeC---CccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 00011235778888775443321 1 11235777786 33344333334445677889999988776543
Q ss_pred ecccceEEEEEeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 319 YKTSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 319 ~~~~~~~L~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..++ .|.++|+.+++ ....+..+ .+.. +.|+|||+.|+...
T Consensus 341 ~~d~--~I~iwd~~~~~-~v~~l~gH~~~V~~---------l~~spdg~~l~S~s 383 (420)
T 4gga_A 341 FAQN--QLVIWKYPTMA-KVAELKGHTSRVLS---------LTMSPDGATVASAA 383 (420)
T ss_dssp TTTC--CEEEEETTTCC-EEEEECCCSSCEEE---------EEECTTSSCEEEEE
T ss_pred cCCC--EEEEEECCCCc-EEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 3233 57777887731 22222222 2333 78999999876554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-06 Score=84.48 Aligned_cols=214 Identities=8% Similarity=0.038 Sum_probs=116.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccC---CCEEEEEEecccccccCCCceEEEEEECCCCc--eEeccc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFE 79 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~ 79 (595)
..|.|+|+. +++...+..+.....+....|+|+ |+.|+.... ...|.++++.+++ ...+..
T Consensus 44 ~~v~iw~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 44 GVIQLYEIQ----HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF----------GGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp EEEEEEEEC----SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET----------TSCEEEECTTSCSSCSEEECC
T ss_pred cEEEEEeCC----CCcccceeeecccCcEEEEEEcCCCCCCceEEEecC----------CCeEEEEeCCCCCccEEEEEe
Confidence 458889998 666654443333346889999999 677766542 2457777888765 333332
Q ss_pred CCCccccccccce------EEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEE
Q 007620 80 SPDICLNAVFGSF------VWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (595)
Q Consensus 80 ~~~~~~~~~~~~~------~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (595)
... .+..+ .|+|+++.|+....+
T Consensus 110 ~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d---------------------------------------------- 138 (357)
T 3i2n_A 110 HKE-----IINAIDGIGGLGIGEGAPEIVTGSRD---------------------------------------------- 138 (357)
T ss_dssp CSS-----CEEEEEEESGGGCC-CCCEEEEEETT----------------------------------------------
T ss_pred ccc-----ceEEEeeccccccCCCccEEEEEeCC----------------------------------------------
Confidence 222 34455 457889887765221
Q ss_pred eecceEEEEcC-CCC--eeecCC-----CCeeeee----EECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 154 YTTAQLVLGSL-DGT--AKDFGT-----PAVYTAV----EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 154 ~~~~~l~~~d~-~g~--~~~lt~-----~~~~~~~----~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
..|.++|+ +++ ...+.. ......+ +|+|+++.|+..... ..+.+||+.+++.
T Consensus 139 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 139 ---GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMAL 202 (357)
T ss_dssp ---SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEE
T ss_pred ---CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCce
Confidence 12334444 221 222211 1122333 489999998877642 3789999987776
Q ss_pred EEeccCCCCccCCccccccccCCCCceeec---CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eecc--
Q 007620 222 RELCDLPPAEDIPVCYNSVREGMRSISWRA---DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILH-- 295 (595)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp---dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~-- 295 (595)
....... .....+.|+| ++.. ++.. . ....+.++++ ..++. ..+.
T Consensus 203 ~~~~~~~-------------~~v~~~~~~~~~~~~~~-l~~~-~-----------~dg~i~i~d~---~~~~~~~~~~~~ 253 (357)
T 3i2n_A 203 RWETNIK-------------NGVCSLEFDRKDISMNK-LVAT-S-----------LEGKFHVFDM---RTQHPTKGFASV 253 (357)
T ss_dssp EEEEECS-------------SCEEEEEESCSSSSCCE-EEEE-E-----------STTEEEEEEE---EEEETTTEEEEE
T ss_pred eeecCCC-------------CceEEEEcCCCCCCCCE-EEEE-C-----------CCCeEEEEeC---cCCCcccceeee
Confidence 4443221 1134578888 7763 3222 1 1235566664 21121 1121
Q ss_pred ---ccCccccceeecCCCc-EEEEEEeecccceEEEEEe
Q 007620 296 ---KLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 296 ---~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~L~~~d 330 (595)
.....+..+.|+|++. .++... .++...||-+.
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 290 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYE 290 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEE
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecC
Confidence 3345577899999998 455543 23434455443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-05 Score=78.03 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=122.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecc-cCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt-~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
.+....|+|||++|+-.+. ...|.++|+.+++..+.. .... .+..+.|+|+++.|+....+
T Consensus 67 ~v~~~~~s~dg~~l~s~s~----------D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D--- 128 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW----------DKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRD--- 128 (319)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETT---
T ss_pred cEEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCC---
Confidence 4778899999998776542 245667799888754432 2222 46789999999987765321
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecC-CCCeeeeeEECCCC--
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFG-TPAVYTAVEPSPDQ-- 186 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt-~~~~~~~~~~SpDg-- 186 (595)
..|.++++.+. ...+. .......+.|+|++
T Consensus 129 ----------------------------------------------~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 129 ----------------------------------------------KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ----------------------------------------------SCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred ----------------------------------------------CeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 12233344332 22222 22345567788753
Q ss_pred ----CeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCccccccccCCCCceeecCCCeeEEEEE
Q 007620 187 ----KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (595)
Q Consensus 187 ----~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (595)
..|+.... ...+.+||+...... .+... ......+.|+|||+. |+..
T Consensus 163 ~~~~~~l~s~~~-------------d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~sp~g~~-l~s~- 214 (319)
T 3frx_A 163 DDDSVTIISAGN-------------DKMVKAWNLNQFQIEADFIGH-------------NSNINTLTASPDGTL-IASA- 214 (319)
T ss_dssp ---CCEEEEEET-------------TSCEEEEETTTTEEEEEECCC-------------CSCEEEEEECTTSSE-EEEE-
T ss_pred CCCccEEEEEeC-------------CCEEEEEECCcchhheeecCC-------------CCcEEEEEEcCCCCE-EEEE-
Confidence 35554432 236889998865543 22211 111345789999983 3222
Q ss_pred eecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 262 ~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
.....+.+||+ ..++..........+..+.|+||+..++.... . .+.+++++.. .....
T Consensus 215 -----------~~dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~---~--~i~v~~~~~~--~~~~~ 273 (319)
T 3frx_A 215 -----------GKDGEIMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA---T--GIKVFSLDPQ--YLVDD 273 (319)
T ss_dssp -----------ETTCEEEEEET---TTTEEEEEEECCSCEEEEEECSSSSEEEEEET---T--EEEEEEETTE--EEEEE
T ss_pred -----------eCCCeEEEEEC---CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC---C--CcEEEEeCcC--eeeec
Confidence 12346777886 32233222223345678999999988766531 2 2444454441 11111
Q ss_pred eeccccc--ccCCCCCCCeeeCCCCCEEEEEe
Q 007620 342 FDRVFEN--VYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 342 ~~~~~~~--~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
....... ....+....+.|+|||+.|+...
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 1111000 00000111278999999887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-05 Score=81.73 Aligned_cols=272 Identities=12% Similarity=0.058 Sum_probs=134.1
Q ss_pred eeEEEecCCCCCCCC-ceeeecCCCCCcccceEEc----cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWS----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~S----PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
.|.+.|+.. .+++ ..+| +.+.......+| |||++++.... ...+|.++|..+.+.......
T Consensus 219 ~V~viD~~~--~t~~~v~~i---~~G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 219 KVNMIDLWM--KEPTTVAEI---KIGSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp EEEEEETTS--SSCCEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCC--CCCcEeEEE---ecCCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEec
Confidence 366777730 1222 2333 334456788999 79998766543 246788999988876554322
Q ss_pred CCcccc-------ccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEE
Q 007620 81 PDICLN-------AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (595)
Q Consensus 81 ~~~~~~-------~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (595)
.....+ ..+..+..|+++..+++...
T Consensus 285 ~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~----------------------------------------------- 317 (567)
T 1qks_A 285 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK----------------------------------------------- 317 (567)
T ss_dssp CEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------------------------------------
T ss_pred cccccccccccCCCceEEEEEcCCCCEEEEEec-----------------------------------------------
Confidence 210000 01223444555544333210
Q ss_pred eecceEEEEcCCC-C---eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCC
Q 007620 154 YTTAQLVLGSLDG-T---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (595)
Q Consensus 154 ~~~~~l~~~d~~g-~---~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~ 229 (595)
...+|+++|... + ...+........+.|+|||++++++.... ..|.++|+.+++.......-
T Consensus 318 -~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s------------n~V~ViD~~t~kl~~~i~vg- 383 (567)
T 1qks_A 318 -ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR------------NKLVVIDTKEGKLVAIEDTG- 383 (567)
T ss_dssp -TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEEEECS-
T ss_pred -CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC------------CeEEEEECCCCcEEEEEecc-
Confidence 134677777632 2 22233334556789999999998886532 37899999877654332110
Q ss_pred CccCCccccccccCCCCcee-ecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCC--Ccee---ccccCccccc
Q 007620 230 AEDIPVCYNSVREGMRSISW-RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEI---LHKLDLRFRS 303 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~w-spdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~--~~~~---l~~~~~~~~~ 303 (595)
. ..|- . .+...| .|++. .++..... ..+.+.+++.++.... ..+. +.........
T Consensus 384 g-~~Ph------p-g~g~~~~~p~~g-~v~~t~~~----------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~ 444 (567)
T 1qks_A 384 G-QTPH------P-GRGANFVHPTFG-PVWATSHM----------GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF 444 (567)
T ss_dssp S-SSBC------C-TTCEEEEETTTE-EEEEEEBS----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred C-cCCC------C-ccceeeECCCCC-cEEEeCCC----------CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEE
Confidence 0 0110 0 123444 56644 24333111 1235666665210000 0121 2211122234
Q ss_pred eeecCCCcEEEEEEeecc---cceEEEEEeCCCC-----CCCcEEEeecccccccCCCCC--CCeeeCCCCCEEEEEee
Q 007620 304 VSWCDDSLALVNETWYKT---SQTRTWLVCPGSK-----DVAPRVLFDRVFENVYSDPGS--PMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 304 ~~wspDg~~l~~~~~~~~---~~~~L~~~d~~~~-----~~~~~~l~~~~~~~~~~~~~~--~~~~~~~dg~~l~~~~~ 372 (595)
+..+||++.++.+..... ....|.++|+++. +...+.+.-..... ....+. .-+.+++||+.++++..
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG-ITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT-CCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc-cCCCCcceEeeeECCCCCEEEEEee
Confidence 567899987665431111 1347888998763 11113331000000 000010 11788999999998854
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-05 Score=88.27 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=121.3
Q ss_pred eeEEEecCCCCCC-CC-ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe-cccCCC
Q 007620 6 GIGIHRLLPDDSL-GP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~-g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~ 82 (595)
.|.|+++...... +. .+.++.+. ..+...+|||||++|+-.+. ...|.++|+.+++..+ +.....
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~sgs~----------Dg~v~vwd~~~~~~~~~~~~h~~ 473 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDGQFALSGSW----------DGELRLWDLAAGVSTRRFVGHTK 473 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS
T ss_pred cEEEEEccCCCcccccccceecCCC--CcEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcceeEEeCCCC
Confidence 3667787631111 11 23455433 35888999999998876542 2567777998886543 333232
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.+..+.|+||++.|+....+ ..|.++
T Consensus 474 -----~v~~~~~s~~~~~l~s~s~D-------------------------------------------------~~i~iw 499 (694)
T 3dm0_A 474 -----DVLSVAFSLDNRQIVSASRD-------------------------------------------------RTIKLW 499 (694)
T ss_dssp -----CEEEEEECTTSSCEEEEETT-------------------------------------------------SCEEEE
T ss_pred -----CEEEEEEeCCCCEEEEEeCC-------------------------------------------------CEEEEE
Confidence 56789999999988765321 112223
Q ss_pred cCCCC-eeecC-----CCCeeeeeEECCCCC-eEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCC
Q 007620 163 SLDGT-AKDFG-----TPAVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (595)
Q Consensus 163 d~~g~-~~~lt-----~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~ 234 (595)
|+.+. ...+. ....+..++|+|++. .++++... ...|.+||+.+++. ..+....
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------d~~v~vwd~~~~~~~~~~~~h~------ 561 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW------------DKTVKVWNLSNCKLRSTLAGHT------ 561 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET------------TSCEEEEETTTCCEEEEECCCS------
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC------------CCeEEEEECCCCcEEEEEcCCC------
Confidence 33221 11111 122456789999974 23333322 23688999886544 3332211
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (595)
.....+.|+|||+. |+.. .....+.+||+ ..++..........+..+.|+|++..++
T Consensus 562 -------~~v~~v~~spdg~~-l~sg------------~~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 562 -------GYVSTVAVSPDGSL-CASG------------GKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp -------SCEEEEEECTTSSE-EEEE------------ETTSBCEEEET---TTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred -------CCEEEEEEeCCCCE-EEEE------------eCCCeEEEEEC---CCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence 11346889999873 3221 11235666775 3223222222334567789999998776
Q ss_pred EEEeecccceEEEEEeCCCC
Q 007620 315 NETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~ 334 (595)
... .. .|.++|+.++
T Consensus 619 ~~~---~~--~i~iwd~~~~ 633 (694)
T 3dm0_A 619 AAT---EH--GIKIWDLESK 633 (694)
T ss_dssp EEE---TT--EEEEEETTTT
T ss_pred EEc---CC--CEEEEECCCC
Confidence 543 12 4777788763
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=83.83 Aligned_cols=256 Identities=14% Similarity=0.112 Sum_probs=130.6
Q ss_pred eeEEEecCCCCCCCCceeeecC-CCCCcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~-~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|+|+. +++...+..+ .....+...+||| ||++|+-.+ . ++ .|.++|+.++..+.+......
T Consensus 143 ~i~lWd~~----~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-~-------D~--~v~iwd~~~~~~~~~~~~~~~ 208 (435)
T 4e54_B 143 DIMLWNFG----IKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-M-------EG--TTRLQDFKGNILRVFASSDTI 208 (435)
T ss_dssp CEEEECSS----CCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-S-------SS--CEEEEETTSCEEEEEECCSSC
T ss_pred EEEEEECC----CCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-C-------CC--EEEEeeccCCceeEEeccCCC
Confidence 47888887 4443333222 2334688999999 677665433 2 33 455569887765555432211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
...+..+.|+||++.|+.... ...|.++|
T Consensus 209 --~~~~~~~~~~~~~~~l~~g~~-------------------------------------------------dg~i~~wd 237 (435)
T 4e54_B 209 --NIWFCSLDVSASSRMVVTGDN-------------------------------------------------VGNVILLN 237 (435)
T ss_dssp --SCCCCCEEEETTTTEEEEECS-------------------------------------------------SSBEEEEE
T ss_pred --CccEEEEEECCCCCEEEEEeC-------------------------------------------------CCcEeeec
Confidence 113457899999998776411 12355566
Q ss_pred CCC-CeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCcccccc
Q 007620 164 LDG-TAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 164 ~~g-~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~ 240 (595)
+++ ....+. ....+..++|+|+++.++++...+ ..+.+||+...+. ..+... .++
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d------------~~v~iwd~~~~~~~~~~~~~----------~~h 295 (435)
T 4e54_B 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD------------QTVKIWDLRQVRGKASFLYS----------LPH 295 (435)
T ss_dssp SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT------------SBCCEEETTTCCSSSCCSBC----------CBC
T ss_pred cCcceeEEEecccceEEeeeecCCCceEEEEecCc------------ceeeEEecccccccceEEEe----------eec
Confidence 654 333332 223456899999998777665432 2567888764332 111110 011
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC------ccccceeecCCCcEEE
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD------LRFRSVSWCDDSLALV 314 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~------~~~~~~~wspDg~~l~ 314 (595)
......+.|+|||.. |+.. .....+.+|++ .++.....+.... .......|+|++..++
T Consensus 296 ~~~v~~~~~spdg~~-l~s~------------~~D~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 296 RHPVNAACFSPDGAR-LLTT------------DQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp SSCEEECCBCTTSSE-EEEE------------ESSSCEEEEES--SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred cccccceeECCCCCe-eEEE------------cCCCEEEEEEC--CCCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence 112345789999983 3322 11235666665 2221222222111 1123456888776554
Q ss_pred EEEeec--------ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEE
Q 007620 315 NETWYK--------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (595)
Q Consensus 315 ~~~~~~--------~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 369 (595)
.....+ .....|.++|..+++ ....+.......+. ....|+|+|+.|+.
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~-~~~~l~~~~~~~v~-----s~~~fspdg~~las 417 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGK-MMCQLYDPESSGIS-----SLNEFNPMGDTLAS 417 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCC-EEEEECCSSCCCCC-----CEEEECTTSSCEEE
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCc-EEEEEeCCCCCcEE-----EEEEECCCCCEEEE
Confidence 432111 011246677877631 11222222111100 11368999997654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-05 Score=82.83 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=39.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECC--CCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~--~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||++|+++... ++. |.++++. +++..+..... .....+..+.|+|||+.|+..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~-------dg~--v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADS-------DKS--LLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGG-------GTE--EEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECC-------CCe--EEEEECcCCCCceeeeeecc--cCCCCceEEEEcCCCCEEEEE
Confidence 37788999999998776643 334 4444555 66544332110 001146789999999988775
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-05 Score=82.58 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=83.0
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEe--ccCCCCccCCccccccccCCCCceeec
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-REL--CDLPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
..+..++|+|+|+.++++.... ..+.+||+.+++. ..+ .... .....+.|+|
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~-------------~~v~~~~~~~ 186 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD------------NVILVWDVGTGAAVLTLGPDVHP-------------DTIYSVDWSR 186 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT------------SCEEEEETTTTEEEEEECTTTCC-------------SCEEEEEECT
T ss_pred CeEEEEEECcCCCCEEEEEcCC------------CEEEEEECCCCCccEEEecCCCC-------------CceEEEEECC
Confidence 3456899999996555554322 3689999886654 333 1111 1134688999
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ec-cccCc-cccceeecCCCcEEEEEEeecccceEEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL-HKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l-~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~L~~ 328 (595)
|++. |+.. .....+.++|+ ..++.. .+ ..... ....+.|+||+..++.... ......|.+
T Consensus 187 ~~~~-l~~~------------~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~i 249 (402)
T 2aq5_A 187 DGAL-ICTS------------CRDKRVRVIEP---RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVAL 249 (402)
T ss_dssp TSSC-EEEE------------ETTSEEEEEET---TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEE
T ss_pred CCCE-EEEE------------ecCCcEEEEeC---CCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEE
Confidence 9874 3332 12346777786 323332 23 12222 3677899999987665421 112237888
Q ss_pred EeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 329 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 329 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+|+.+.+ .+..+....... +...+.|+++|+.+++..
T Consensus 250 wd~~~~~-~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 250 WDTKHLE-EPLSLQELDTSS-----GVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp EETTBCS-SCSEEEECCCCS-----SCEEEEEETTTTEEEEEE
T ss_pred EcCcccc-CCceEEeccCCC-----ceeEEEEcCCCCEEEEEE
Confidence 8887742 222222111100 111278999999887664
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-05 Score=78.41 Aligned_cols=239 Identities=10% Similarity=0.086 Sum_probs=128.4
Q ss_pred eEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc-------eEecc
Q 007620 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLF 78 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------~~~lt 78 (595)
|.|+|+. +++. ..++ ... ..+....|||||+.||.... + ..+.++++..+. ...+.
T Consensus 88 v~vWd~~----~~~~~~~~~-~~~-~~v~~~~~sp~g~~lasg~~--------d--~~i~v~~~~~~~~~~~~~~~~~~~ 151 (354)
T 2pbi_B 88 VIVWDSF----TTNKEHAVT-MPC-TWVMACAYAPSGCAIACGGL--------D--NKCSVYPLTFDKNENMAAKKKSVA 151 (354)
T ss_dssp EEEEETT----TCCEEEEEE-CSS-SCCCEEEECTTSSEEEEEST--------T--SEEEEEECCCCTTCCSGGGCEEEE
T ss_pred EEEEECC----CCCcceEEe-cCC-CCEEEEEECCCCCEEEEeeC--------C--CCEEEEEEeccccccccccceeee
Confidence 5666766 3433 3343 232 35788999999998876542 2 344444554321 12221
Q ss_pred cCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecce
Q 007620 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (595)
Q Consensus 79 ~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (595)
.... .+..+.|+|+++.|+....+ ..
T Consensus 152 ~h~~-----~v~~~~~~~~~~~l~t~s~D-------------------------------------------------~~ 177 (354)
T 2pbi_B 152 MHTN-----YLSACSFTNSDMQILTASGD-------------------------------------------------GT 177 (354)
T ss_dssp ECSS-----CEEEEEECSSSSEEEEEETT-------------------------------------------------SE
T ss_pred ccCC-----cEEEEEEeCCCCEEEEEeCC-------------------------------------------------Cc
Confidence 1111 45688999999987764211 23
Q ss_pred EEEEcC-CCCe-eecC-CCCeeeeeEECC--CCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCcc
Q 007620 159 LVLGSL-DGTA-KDFG-TPAVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAED 232 (595)
Q Consensus 159 l~~~d~-~g~~-~~lt-~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~ 232 (595)
|.++|+ +++. ..+. .......++|+| +|+.|+....+ ..+.+||+.+++. ..+....
T Consensus 178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D-------------g~v~~wd~~~~~~~~~~~~h~---- 240 (354)
T 2pbi_B 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD-------------KKAMVWDMRSGQCVQAFETHE---- 240 (354)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT-------------SCEEEEETTTCCEEEEECCCS----
T ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEecCCC----
Confidence 444555 4432 2232 222344566666 56777766532 3688999876543 3332211
Q ss_pred CCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc---CccccceeecCC
Q 007620 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDD 309 (595)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~---~~~~~~~~wspD 309 (595)
.....+.|+|++.. ++.. .....+.++|+ ..+....+... ......+.|+|+
T Consensus 241 ---------~~v~~v~~~p~~~~-l~s~------------s~D~~v~lwd~---~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 241 ---------SDVNSVRYYPSGDA-FASG------------SDDATCRLYDL---RADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp ---------SCEEEEEECTTSSE-EEEE------------ETTSCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred ---------CCeEEEEEeCCCCE-EEEE------------eCCCeEEEEEC---CCCcEEEEEcCCCcccceeEEEEeCC
Confidence 11345789999873 3222 11235666675 32222222211 123457889999
Q ss_pred CcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 310 g~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
|..++... .++ .|.++|+.+++ ....+.. ..+.. +.|+|||+.|+...
T Consensus 296 g~~l~~g~--~d~--~i~vwd~~~~~-~~~~l~~h~~~v~~---------l~~spdg~~l~sgs 345 (354)
T 2pbi_B 296 GRLLFAGY--NDY--TINVWDVLKGS-RVSILFGHENRVST---------LRVSPDGTAFCSGS 345 (354)
T ss_dssp SSEEEEEE--TTS--CEEEEETTTCS-EEEEECCCSSCEEE---------EEECTTSSCEEEEE
T ss_pred CCEEEEEE--CCC--cEEEEECCCCc-eEEEEECCCCcEEE---------EEECCCCCEEEEEc
Confidence 99877653 223 46667876631 2222322 22332 78999999876554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-06 Score=84.19 Aligned_cols=95 Identities=9% Similarity=-0.045 Sum_probs=45.8
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEE-EEEEecccccccCC----CceEEEEEECC-CCceE-ecc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRI-AFSVRVDEEDNVSS----CKLRVWIADAE-TGEAK-PLF 78 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~l-af~~~~~~~~~~~~----~~~~L~v~d~~-~g~~~-~lt 78 (595)
.|.+.++.. +|+..++...+.........|||||++| +|+...+.-..... ....+.+++++ .|+.. .+.
T Consensus 61 ~v~~~~~~~---~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 61 KWSSFAVKS---PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp EEEEEEEEE---TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEECC---CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe
Confidence 466777752 4555544322211135668999999974 45542000000000 12334455554 35432 232
Q ss_pred cCCCccccccccceEEecCCcEEEEE
Q 007620 79 ESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 79 ~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.... ........+.|+|||+.|++.
T Consensus 138 ~~~~-~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 138 NYEY-QENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp EEEC-CTTCCEEEEEECTTSSEEEEE
T ss_pred eEEe-CCCCcceEEEECCCCCEEEEE
Confidence 1000 000135688999999987664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.58 E-value=0.0001 Score=72.86 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=63.4
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
.....++++++.|+....+ ..+.+||+.+.....+..... ........|++++...
T Consensus 131 ~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDESH-----------SEWVSCVRFSPNSSNP 186 (340)
T ss_dssp EEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSSC-----------SSCEEEEEECSCSSSC
T ss_pred eeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEEEEeccc-----------cCcccceEEccCCCCc
Confidence 4467889999988776532 257788887655443321110 0111235566665443
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+... . .....+.+++. ..++.. .+......+..+.|+||+..|+... .++ .|.++|+.+
T Consensus 187 ~~~s-~----------~~d~~i~i~d~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~Dg--~i~iwd~~~ 246 (340)
T 4aow_A 187 IIVS-C----------GWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDG--QAMLWDLNE 246 (340)
T ss_dssp EEEE-E----------ETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTC--EEEEEETTT
T ss_pred EEEE-E----------cCCCEEEEEEC---CCCceeeEecCCCCcEEEEEECCCCCEEEEEe--CCC--eEEEEEecc
Confidence 3222 1 11234566665 322322 2333445677889999999877654 223 566778876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-05 Score=79.52 Aligned_cols=246 Identities=11% Similarity=0.013 Sum_probs=130.4
Q ss_pred CCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
+.+.++|.. .......|.|+|||+.|+|+.. ....|++++. +|+.+.+..... ....+.|++|
T Consensus 34 ~~~~~~l~~--~~~~~egp~~~~~g~~l~~~d~---------~~~~i~~~~~-~g~~~~~~~~~~-----~~~gl~~d~d 96 (305)
T 3dr2_A 34 DARLLTLYD--QATWSEGPAWWEAQRTLVWSDL---------VGRRVLGWRE-DGTVDVLLDATA-----FTNGNAVDAQ 96 (305)
T ss_dssp TCCCEEEEC--CCSSEEEEEEEGGGTEEEEEET---------TTTEEEEEET-TSCEEEEEESCS-----CEEEEEECTT
T ss_pred CCceEEEec--CCcCccCCeEeCCCCEEEEEEC---------CCCEEEEEeC-CCCEEEEeCCCC-----ccceeeECCC
Confidence 455666763 3334678999999999988753 2467888898 466555543332 3467899999
Q ss_pred CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCC---
Q 007620 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP--- 174 (595)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~--- 174 (595)
|++++... + ...|++++.+|+.+.+...
T Consensus 97 G~l~v~~~------------------------~-------------------------~~~v~~~~~~g~~~~~~~~~~~ 127 (305)
T 3dr2_A 97 QRLVHCEH------------------------G-------------------------RRAITRSDADGQAHLLVGRYAG 127 (305)
T ss_dssp SCEEEEET------------------------T-------------------------TTEEEEECTTSCEEEEECEETT
T ss_pred CCEEEEEC------------------------C-------------------------CCEEEEECCCCCEEEEEeccCC
Confidence 99554431 0 1234444544444333211
Q ss_pred ---CeeeeeEECCCCCeEEEEEc----ccCccc-cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCC
Q 007620 175 ---AVYTAVEPSPDQKYVLITSM----HRPYSY-KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (595)
Q Consensus 175 ---~~~~~~~~SpDg~~l~~~~~----~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (595)
.....+.++|||+ |+++.. ...+.. ..........|+++|.++++.+.+... .....
T Consensus 128 ~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--------------~~p~g 192 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADL--------------DHPNG 192 (305)
T ss_dssp EECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEE--------------SSEEE
T ss_pred CccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecC--------------CCCcc
Confidence 1124688999997 555411 000000 000000134799999977766555311 01235
Q ss_pred ceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccc-cCccccceeecCCCcEEEEEEeeccc
Q 007620 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK-LDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 247 ~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
+.|+|||+. ||+...... ......+++++. .++... .+.. ..+....+.+.++|..++..
T Consensus 193 l~~spdg~~-lyv~~~~~~------~~~~~~i~~~~~---~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~------ 256 (305)
T 3dr2_A 193 LAFSPDEQT-LYVSQTPEQ------GHGSVEITAFAW---RDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS------ 256 (305)
T ss_dssp EEECTTSSE-EEEEECCC---------CCCEEEEEEE---ETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC------
T ss_pred eEEcCCCCE-EEEEecCCc------CCCCCEEEEEEe---cCCCccCCeEEEECCCCCCCeEEECCCCCEEEec------
Confidence 789999973 655421100 000135666564 221111 1111 12233456778888744432
Q ss_pred ceEEEEEeCCCCCCCcEEEe-ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 323 QTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
...|+++++++ .....+. .....+ +.++++++.|++..
T Consensus 257 ~~gv~~~~~~g--~~~~~~~~~~~~~~---------~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 257 GTGVCVFDSDG--QLLGHIPTPGTASN---------CTFDQAQQRLFITG 295 (305)
T ss_dssp SSEEEEECTTS--CEEEEEECSSCCCE---------EEECTTSCEEEEEE
T ss_pred CCcEEEECCCC--CEEEEEECCCceeE---------EEEeCCCCEEEEEc
Confidence 12599999876 2222221 111222 67788888888776
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=89.09 Aligned_cols=203 Identities=9% Similarity=0.142 Sum_probs=110.2
Q ss_pred eeEEEecCCCCCCCCceeeecCC-CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc----eEecccC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFES 80 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~ 80 (595)
.|.|+|+. ++..+.+..+. ....+....|||||++|+..+. + ..|.++++.+++ ...+...
T Consensus 34 ~i~iw~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--------d--~~v~vwd~~~~~~~~~~~~~~~~ 99 (377)
T 3dwl_C 34 QVELYEQD----GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ--------D--RNAYVYEKRPDGTWKQTLVLLRL 99 (377)
T ss_dssp CBCEEEEE----TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET--------T--SSEEEC------CCCCEEECCCC
T ss_pred EEEEEEcc----CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC--------C--CeEEEEEcCCCCceeeeeEeccc
Confidence 47788887 44222222222 2235788999999998877653 2 346666777765 3333322
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
.. .+..+.|+||++.|+....+ ..|.
T Consensus 100 ~~-----~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~i~ 125 (377)
T 3dwl_C 100 NR-----AATFVRWSPNEDKFAVGSGA-------------------------------------------------RVIS 125 (377)
T ss_dssp SS-----CEEEEECCTTSSCCEEEESS-------------------------------------------------SCEE
T ss_pred CC-----ceEEEEECCCCCEEEEEecC-------------------------------------------------CeEE
Confidence 22 56789999999988775321 1233
Q ss_pred EEcC-CCC----eeecCC--CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-------------
Q 007620 161 LGSL-DGT----AKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL------------- 220 (595)
Q Consensus 161 ~~d~-~g~----~~~lt~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~------------- 220 (595)
++++ .++ .+.+.. ...+..++|+|||++|+....+ ..+.+||+..+.
T Consensus 126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCccccccccc
Confidence 3344 222 233332 3356789999999988877643 257788865221
Q ss_pred ---EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-----e
Q 007620 221 ---VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----E 292 (595)
Q Consensus 221 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-----~ 292 (595)
.+.+... +.......+.|+|||+. |+.. .....+.+++. ..++. .
T Consensus 193 ~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~-l~~~------------~~d~~i~iwd~---~~~~~~~~~~~ 245 (377)
T 3dwl_C 193 LPFNTVCAEY-----------PSGGWVHAVGFSPSGNA-LAYA------------GHDSSVTIAYP---SAPEQPPRALI 245 (377)
T ss_dssp CCEEEEEECC-----------CCSSSEEEEEECTTSSC-EEEE------------ETTTEEC-CEE---CSTTSCEEECC
T ss_pred cchhhhhhcc-----------cCCceEEEEEECCCCCE-EEEE------------eCCCcEEEEEC---CCCCCcceeeE
Confidence 1111111 11112345789999883 3332 11235666675 32332 2
Q ss_pred eccccCccccceeecCCCcEEEEE
Q 007620 293 ILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
.+......+..+.|+|||..|+..
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEE
T ss_pred eecCCCCceEEEEEcCCCCEEEEE
Confidence 333344557789999999877654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-05 Score=74.56 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=51.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC-Ccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~-~~~ 84 (595)
.+++.|+. +++.... ++.+... ...|||||++|+............+....|.++|+++++...-.... ...
T Consensus 32 ~v~v~D~~----t~~~~~~--i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 32 RVHVYDYT----NGKFLGM--VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp EEEEEETT----TCCEEEE--EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred eEEEEECC----CCeEEEE--ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 45666765 5654432 2344344 88999999987665431000000012356889999887753322111 000
Q ss_pred -ccccccceEEecCCcEEEEE
Q 007620 85 -LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 -~~~~~~~~~Wspdg~~l~~~ 104 (595)
.......+.++|||++|+..
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEE
Confidence 01124578999999998875
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00016 Score=72.82 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=68.4
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC-CCCCCCCcccc
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDPPKKTMV 118 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~-~~~~~~~~~~~ 118 (595)
||+++ +|+...+.. . -....|+++|.++++......... .. .+.+||||+.|+..... .+..
T Consensus 13 ~~~~~-~yv~~~~~~-~--~~d~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spdg~~lyv~~~~~~~~~------- 75 (361)
T 2oiz_A 13 PQENR-IYVMDSVFM-H--LTESRVHVYDYTNGKFLGMVPTAF-----NG-HVQVSNDGKKIYTMTTYHERIT------- 75 (361)
T ss_dssp CGGGE-EEEEECCGG-G--GGGCEEEEEETTTCCEEEEEECCE-----EE-EEEECTTSSEEEEEEEEETTSS-------
T ss_pred CCCCE-EEEECCCCC-c--cccCeEEEEECCCCeEEEEecCCC-----CC-ceEECCCCCEEEEEEecccccc-------
Confidence 47776 455543110 0 113589999999887543322111 23 78999999998886210 0000
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC--C-----CCeeeeeEECCCCCeE
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG--T-----PAVYTAVEPSPDQKYV 189 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt--~-----~~~~~~~~~SpDg~~l 189 (595)
.| + ....|.++|+ +++. ..+. . ......+.+||||++|
T Consensus 76 ----------~g-----------------~------~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 76 ----------RG-----------------K------RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp ----------SS-----------------C------EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred ----------cC-----------------C------CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 00 0 1234667777 4443 2221 1 1123468999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
++..... ...+.++|+++++.
T Consensus 123 ~v~n~~~-----------~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 123 VLQNASP-----------ATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEESS-----------SEEEEEEETTTTEE
T ss_pred EEECCCC-----------CCeEEEEECCCCcE
Confidence 8875321 24688999986654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-05 Score=76.13 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=129.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....+.|+|||+ |+++.. ....|+++++++++.+.++.... ..+..+.|++||++++.....
T Consensus 46 ~~~~~~~~~~g~-l~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~l~v~~~~~---- 107 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDV---------FEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGD---- 107 (333)
T ss_dssp CEEEEEECTTSC-EEEEET---------TTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTT----
T ss_pred cccCcEECCCCC-EEEEEC---------CCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECCCCcEEEEeCCC----
Confidence 457899999998 555542 24689999999998777652221 145688999999855543110
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Ceee-cCC---CCeeeeeEECCCC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKD-FGT---PAVYTAVEPSPDQ 186 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~-lt~---~~~~~~~~~SpDg 186 (595)
+ . ....|++++.++ ..+. +.. ......+.++|||
T Consensus 108 ------------------~----------------~-------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 108 ------------------F----------------K-------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 146 (333)
T ss_dssp ------------------S----------------S-------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred ------------------C----------------C-------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence 0 0 023577788744 4442 221 1234578999999
Q ss_pred CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
+ |+++...... ......|+++|.++++.+.+.... .....+.|+|||+. |++...
T Consensus 147 ~-l~v~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~dg~~-l~v~~~---- 201 (333)
T 2dg1_A 147 G-FYFTDFRGYS------TNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKV-LWVTET---- 201 (333)
T ss_dssp C-EEEEECCCBT------TBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSE-EEEEEG----
T ss_pred C-EEEEeccccc------cCCCceEEEEeCCCCEEEEeecCC-------------CcccceEECCCCCE-EEEEeC----
Confidence 6 4444332100 001347899998876655543210 01235788999873 544311
Q ss_pred CcccccCCcceEEeccCCCCCCCC-ceec-----cccC--ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCc
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEK-PEIL-----HKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~-~~~l-----~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~ 338 (595)
....+++++. .+.+. ...+ .... .....+.++++|..++... ....|+++|+++ ...
T Consensus 202 -------~~~~i~~~d~--~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~----~~~~v~~~d~~g--~~~ 266 (333)
T 2dg1_A 202 -------TANRLHRIAL--EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY----GQGRVLVFNKRG--YPI 266 (333)
T ss_dssp -------GGTEEEEEEE--CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE----TTTEEEEECTTS--CEE
T ss_pred -------CCCeEEEEEe--cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc----CCCEEEEECCCC--CEE
Confidence 1235666664 11122 2111 1111 1344577888988665542 123788899865 222
Q ss_pred EEEeeccc-ccccCCCCCCCeeeCCCCCEEEEEeee
Q 007620 339 RVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (595)
Q Consensus 339 ~~l~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~ 373 (595)
+.+..... ......+ ..+.+++||+.||+....
T Consensus 267 ~~~~~~~~~~g~~~~~--~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRS--THPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTGGGTCSCBC--CEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCCccccccCc--ceEEECCCCCEEEEEeCc
Confidence 22211100 0000001 126788998888877643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-05 Score=81.01 Aligned_cols=214 Identities=14% Similarity=0.182 Sum_probs=120.1
Q ss_pred eeeEEEecCCCCCCCC---ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 5 TGIGIHRLLPDDSLGP---EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~---~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
..|.|+|+. +++ ...+.. ....+....|+|||+.|+.... + ..|.++++.+++........
T Consensus 30 ~~v~i~~~~----~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~--------d--g~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 30 HEVHIYEKS----GNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGT--------D--RNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEEEEE----TTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEET--------T--SCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEeCC----CCcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcC--------C--CeEEEEECCCCeeeeeEEee
Confidence 358888987 553 344442 2335889999999998887653 2 34666677777633322111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. ....+..+.|+|+++.|+....+ ..|.+
T Consensus 94 ~--~~~~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~v~i 122 (372)
T 1k8k_C 94 R--INRAARCVRWAPNEKKFAVGSGS-------------------------------------------------RVISI 122 (372)
T ss_dssp C--CSSCEEEEEECTTSSEEEEEETT-------------------------------------------------SSEEE
T ss_pred c--CCCceeEEEECCCCCEEEEEeCC-------------------------------------------------CEEEE
Confidence 1 01246789999999988775311 11222
Q ss_pred EcC-CCC----eeecCC--CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-----------------
Q 007620 162 GSL-DGT----AKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD----------------- 217 (595)
Q Consensus 162 ~d~-~g~----~~~lt~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~----------------- 217 (595)
+++ .++ ...+.. ...+..+.|+||++.|+..... ..+.+||+.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKM 189 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------------CCEEEEEccccccccccccccccccc
Confidence 333 221 122211 2345689999999988877542 367788853
Q ss_pred --CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ec
Q 007620 218 --GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL 294 (595)
Q Consensus 218 --g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l 294 (595)
+.....+... ......+.|+|+++. |+.. .....+.+++. ..++.. .+
T Consensus 190 ~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~-l~~~------------~~d~~i~i~d~---~~~~~~~~~ 240 (372)
T 1k8k_C 190 PFGELMFESSSS-------------CGWVHGVCFSANGSR-VAWV------------SHDSTVCLADA---DKKMAVATL 240 (372)
T ss_dssp CTTCEEEECCCC-------------SSCEEEEEECSSSSE-EEEE------------ETTTEEEEEEG---GGTTEEEEE
T ss_pred chhhheEecCCC-------------CCeEEEEEECCCCCE-EEEE------------eCCCEEEEEEC---CCCceeEEE
Confidence 2222222211 011245789999873 3332 11235667775 323332 33
Q ss_pred cccCccccceeecCCCcEEEEEEeecccceEEEEEe
Q 007620 295 HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 295 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d 330 (595)
......+..+.|+||+..++.. .++...+|.++
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~ 273 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG---HDCFPVLFTYD 273 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE---TTSSCEEEEEE
T ss_pred ccCCCCeEEEEEecCCCEEEEE---eCCeEEEEEcc
Confidence 3334456788999999866654 23444555544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-05 Score=77.67 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=119.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecC--CcEEEEEecCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNN--STLLIFTIPSS 108 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd--g~~l~~~~~~~ 108 (595)
.+....|||||++||.... ++.-.||-++..+++.. .+..... .+..+.|+++ ++.|+....+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~--------dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~d- 78 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSS--------DKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYD- 78 (379)
T ss_dssp CEEEEEECSSSSEEEEEET--------TSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETT-
T ss_pred cEEEEEEcCCCCEEEEEEC--------CCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEeccC-
Confidence 5888999999999887643 33445554432233332 2322222 4678999977 7777664211
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC---eeecC-CCCeeeeeEEC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFG-TPAVYTAVEPS 183 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~---~~~lt-~~~~~~~~~~S 183 (595)
..|.++++ +++ ...+. ....+..++|+
T Consensus 79 ------------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 110 (379)
T 3jrp_A 79 ------------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 110 (379)
T ss_dssp ------------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred ------------------------------------------------CEEEEEEcCCCceeEeeeecCCCcceEEEEeC
Confidence 12334444 332 11222 22346689999
Q ss_pred CC--CCeEEEEEcccCccccccCcccceeEEEEcCCCce---EEEeccCCCCccCCccccccccCCCCceeec-------
Q 007620 184 PD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL---VRELCDLPPAEDIPVCYNSVREGMRSISWRA------- 251 (595)
Q Consensus 184 pD--g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp------- 251 (595)
|+ ++.|+..... ..+.+||+..+. ...+.... .....+.|+|
T Consensus 111 ~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 111 PHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA-------------IGVNSASWAPATIEEDG 164 (379)
T ss_dssp CGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEEECCT-------------TCEEEEEECCCC-----
T ss_pred CCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEecCCC-------------CceEEEEEcCccccccc
Confidence 99 8888877642 368889987542 12221110 1123577888
Q ss_pred ------CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-----eccccCccccceeecCC---CcEEEEEE
Q 007620 252 ------DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-----ILHKLDLRFRSVSWCDD---SLALVNET 317 (595)
Q Consensus 252 ------dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-----~l~~~~~~~~~~~wspD---g~~l~~~~ 317 (595)
|+.. ++.. .....+.++|+ ..+... .+......+..+.|+|+ +..|+...
T Consensus 165 ~~~~~~~~~~-l~~~------------~~dg~i~i~d~---~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 165 EHNGTKESRK-FVTG------------GADNLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp -----CTTCE-EEEE------------ETTSCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cccCCCCCCE-EEEE------------eCCCeEEEEEe---cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 4552 3222 11235666665 222211 12223445778999999 66666653
Q ss_pred eecccceEEEEEeCCCCCCC-cEEEeec-ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 318 WYKTSQTRTWLVCPGSKDVA-PRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
.++. |.++|+.+++.. ...+... .....+ ..+.|+++|+.|+....
T Consensus 229 --~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 229 --QDRT--CIIWTQDNEQGPWKKTLLKEEKFPDVL-----WRASWSLSGNVLALSGG 276 (379)
T ss_dssp --TTSC--EEEEEESSTTSCCEEEESSSSCCSSCE-----EEEEECSSSCCEEEEES
T ss_pred --CCCE--EEEEeCCCCCccceeeeeccccCCCcE-----EEEEEcCCCCEEEEecC
Confidence 2343 444555553111 1222211 000000 12789999998776653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00017 Score=73.83 Aligned_cols=301 Identities=13% Similarity=0.094 Sum_probs=150.3
Q ss_pred ccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
.||++++ |+.+.... .....|.++|+++++...-..... .. .+.+||||+.|++.....
T Consensus 81 ~~~~~~v-yV~n~~~~----~~~~~VsVID~~t~~vv~~I~vG~-----~P-gia~SpDgk~lyVan~~~---------- 139 (426)
T 3c75_H 81 APDARRV-YIQDPAHF----AAITQQFVIDGSTGRILGMTDGGF-----LP-HPVAAEDGSFFAQASTVF---------- 139 (426)
T ss_dssp CCCTTEE-EEEECTTT----CSSEEEEEEETTTTEEEEEEEECS-----SC-EEEECTTSSCEEEEEEEE----------
T ss_pred CCCCCEE-EEECCCcC----CCCCeEEEEECCCCEEEEEEECCC-----CC-ceEECCCCCEEEEEeccc----------
Confidence 3788875 55543100 001789999999987543322222 23 789999999988862100
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecC-C-C------CeeeeeEECCCCCe
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG-T-P------AVYTAVEPSPDQKY 188 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt-~-~------~~~~~~~~SpDg~~ 188 (595)
+ +.. .. .....|.++|. ++++. .|. . + ..-..+.+||||++
T Consensus 140 -----------~-----~~~-------~G------~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 140 -----------E-----RIA-------RG------KRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN 190 (426)
T ss_dssp -----------E-----ETT-------EE------EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred -----------c-----ccc-------cC------CCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 0 000 00 01346888888 55432 332 1 1 12247899999999
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCC-CCceeecCCCeeEEEEEeecCC
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGM-RSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~-~~~~wspdg~~~l~~~~~~d~~ 266 (595)
|++..... ...|.++|+.+++. ..+. .+.... ....+. ..+..++||+ ++++.. .
T Consensus 191 lyV~n~~~-----------~~~VsVID~~t~kvv~~I~-v~g~~~------~~p~g~~~~v~~~~dG~--~~~V~~-~-- 247 (426)
T 3c75_H 191 LLFYQFSP-----------APAVGVVDLEGKTFDRMLD-VPDCYH------IFPASPTVFYMNCRDGS--LARVDF-A-- 247 (426)
T ss_dssp EEEEECSS-----------SCEEEEEETTTTEEEEEEE-CCSEEE------EEEEETTEEEEEETTSS--EEEEEC-C--
T ss_pred EEEEecCC-----------CCeEEEEECCCCeEEEEEE-cCCcee------eccCCCcEEEEEcCCCC--EEEEEC-C--
Confidence 98885321 23789999987655 3332 110000 000000 1133455554 333311 1
Q ss_pred CcccccCCcceEEeccCCCCCCCCcee----ccc--cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEE
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPEI----LHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~~----l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~ 340 (595)
+ ++... ... .......+.+++|+..+++... . ..++++|..+. ..+.
T Consensus 248 --------------------~-~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~--g~V~ViD~~~~--~~~v 300 (426)
T 3c75_H 248 --------------------D-GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--T--GKIFQADLTAE--GATF 300 (426)
T ss_dssp --------------------T-TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--T--SEEEEEEECSS--CEEE
T ss_pred --------------------C-CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--C--CcEEEEeccCC--ceEE
Confidence 1 11110 010 0111234567899887666542 2 37999998762 3222
Q ss_pred Eeeccc-----ccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecC
Q 007620 341 LFDRVF-----ENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (595)
Q Consensus 341 l~~~~~-----~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (595)
+-...+ ...-..|++ ..+.+++||+++|+...+... + +.......+..+|+++.+...-+...
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~-g----------thk~~s~~VsVID~~T~kvv~~I~vg 369 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE-W----------KHKAASRFVVVLNAETGERINKIELG 369 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT-T----------CTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc-c----------cccCCCCEEEEEECCCCeEEEEEECC
Confidence 211000 000001111 235778888888877543110 0 00000112446788888755433211
Q ss_pred ccccceeeEEeeeCCCcccccccCC-EEEEEEecCCCcceEEEEeCCCCcee
Q 007620 415 REKYFETAVALVFGQGEEDINLNQL-KILTSKESKTEITQYHILSWPLKKSS 465 (595)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~s~~~p~~l~~~d~~~~~~~ 465 (595)
..+. ...|++|++ .++.... ....|.++|+.++++.
T Consensus 370 -----~~P~-------gia~spDg~~~lyv~n~---~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 370 -----HEID-------SINVSQDAEPLLYALSA---GTQTLHIYDAATGEEL 406 (426)
T ss_dssp -----EEEC-------EEEECCSSSCEEEEEET---TTTEEEEEETTTCCEE
T ss_pred -----CCcC-------eEEEccCCCEEEEEEcC---CCCeEEEEECCCCCEE
Confidence 1122 245889998 5554442 2467999998877654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=80.33 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.0
Q ss_pred eeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +++.. .+.. ....+....|+|||++|+..+. ...|.++|+.+++.........
T Consensus 146 ~i~iwd~~----~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~----------d~~v~iwd~~~~~~~~~~~~~~-- 207 (393)
T 1erj_A 146 LIRIWDIE----NRKIVMILQG--HEQDIYSLDYFPSGDKLVSGSG----------DRTVRIWDLRTGQCSLTLSIED-- 207 (393)
T ss_dssp CEEEEETT----TTEEEEEECC--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECSS--
T ss_pred eEEEEECC----CCcEEEEEcc--CCCCEEEEEEcCCCCEEEEecC----------CCcEEEEECCCCeeEEEEEcCC--
Confidence 36777876 45443 3332 2235788999999998876542 2456777998887554433332
Q ss_pred ccccccceEEec-CCcEEEEE
Q 007620 85 LNAVFGSFVWVN-NSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wsp-dg~~l~~~ 104 (595)
.+..+.|+| ||+.|+..
T Consensus 208 ---~v~~~~~~~~~~~~l~~~ 225 (393)
T 1erj_A 208 ---GVTTVAVSPGDGKYIAAG 225 (393)
T ss_dssp ---CEEEEEECSTTCCEEEEE
T ss_pred ---CcEEEEEECCCCCEEEEE
Confidence 466889998 88877765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-05 Score=77.15 Aligned_cols=90 Identities=17% Similarity=-0.057 Sum_probs=52.2
Q ss_pred eeeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccc--cccCCCceEEEEEECCCCceEecccCC
Q 007620 5 TGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEE--DNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~--~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
..|.+.|+. +++.. +|. -+... ...+||||++|+........ .+ +....|.++|+.+++...-....
T Consensus 99 ~~VsVID~~----t~~vv~~I~---vG~~P-gia~SpDgk~lyVan~~~~~~~~G--~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 99 TQQFVIDGS----TGRILGMTD---GGFLP-HPVAAEDGSFFAQASTVFERIARG--KRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEEEEEETT----TTEEEEEEE---ECSSC-EEEECTTSSCEEEEEEEEEETTEE--EEEEEEEEECTTTCCEEEEEEET
T ss_pred CeEEEEECC----CCEEEEEEE---CCCCC-ceEECCCCCEEEEEeccccccccC--CCCCEEEEEECCCCcEEEEEECC
Confidence 456777776 44443 332 33345 89999999987665421000 00 12467999999998754321111
Q ss_pred --Ccc-ccccccceEEecCCcEEEEE
Q 007620 82 --DIC-LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 82 --~~~-~~~~~~~~~Wspdg~~l~~~ 104 (595)
... .......+.++|||++|++.
T Consensus 169 g~~r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 169 DAPRFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp TCCCCCBSCCGGGSEECTTSSEEEEE
T ss_pred CccccccCCCcceEEEcCCCCEEEEE
Confidence 000 00123478999999998886
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-05 Score=76.77 Aligned_cols=77 Identities=6% Similarity=-0.024 Sum_probs=55.1
Q ss_pred eeEEEecCCCCCCCC----ceeeecCCCCCcccceEEccCCC-EEEEEEecccccccCCCceEEEEEEC-CCCceEeccc
Q 007620 6 GIGIHRLLPDDSLGP----EKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFE 79 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~----~~~lt~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~L~v~d~-~~g~~~~lt~ 79 (595)
.|.|+++. +++ .+.+.. ....+....|+|||+ .|+.... ...|.++++ .+++...+..
T Consensus 34 ~v~iw~~~----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 34 SLTVYKFD----IQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTV----------QGEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEEEE----TTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEET----------TSCEEEECSSSSSSEEECBS
T ss_pred eEEEEEeC----CCCccccceeeee--cCCceEEEEECCCCCcEEEEEcC----------CCeEEEEEeccCCceEeccc
Confidence 57888887 454 445543 233588999999999 7776542 256788899 8888877754
Q ss_pred --CCCccccccccceEEecCCcEEEEE
Q 007620 80 --SPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 80 --~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
... .+..+.|+| ++.|+..
T Consensus 98 ~~~~~-----~v~~l~~~~-~~~l~s~ 118 (342)
T 1yfq_A 98 NEANL-----GICRICKYG-DDKLIAA 118 (342)
T ss_dssp CCCCS-----CEEEEEEET-TTEEEEE
T ss_pred cCCCC-----ceEEEEeCC-CCEEEEE
Confidence 333 567899999 8877765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00013 Score=71.22 Aligned_cols=144 Identities=6% Similarity=-0.100 Sum_probs=77.6
Q ss_pred ceEEEEcCC-CCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCc
Q 007620 157 AQLVLGSLD-GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (595)
Q Consensus 157 ~~l~~~d~~-g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~ 235 (595)
..|++++.+ ++.+.+..+.....+.++|||+ |++... ..|+++|.++++.+.+...+.. .+.
T Consensus 35 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~~--------------~~l~~~d~~~g~~~~~~~~~~~--~~~ 97 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATIG--------------TKFCALNWKEQSAVVLATVDND--KKN 97 (297)
T ss_dssp TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEET--------------TEEEEEETTTTEEEEEEECCTT--CSS
T ss_pred CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEEC--------------CeEEEEECCCCcEEEEEecCCC--CCC
Confidence 357777773 4444443344556789999999 444431 2688999988887776543210 000
Q ss_pred cccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEE
Q 007620 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (595)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (595)
.....+.+.|||+ +++..................+|.++. + ++...+.........+.|+||++.+++
T Consensus 98 ------~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~---~-g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 98 ------NRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFP---D-HHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp ------EEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECT---T-SCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred ------CCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEEC---C-CCEEEEeeccccccceEEcCCCCEEEE
Confidence 1123467788887 544321111000000012245777674 3 344443332233456899999987654
Q ss_pred EEeecccceEEEEEeCC
Q 007620 316 ETWYKTSQTRTWLVCPG 332 (595)
Q Consensus 316 ~~~~~~~~~~L~~~d~~ 332 (595)
... ....|++++++
T Consensus 166 ~~~---~~~~i~~~~~d 179 (297)
T 3g4e_A 166 IDS---LSYSVDAFDYD 179 (297)
T ss_dssp EEG---GGTEEEEEEEC
T ss_pred ecC---CCCcEEEEecc
Confidence 431 22378888763
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-06 Score=85.35 Aligned_cols=190 Identities=12% Similarity=0.023 Sum_probs=106.3
Q ss_pred CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCC
Q 007620 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSS 108 (595)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~ 108 (595)
...+...+|||||++||-.+. ++. +.+++.++ ....+. .... ....+.+++|||||+.|+....+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~--------dg~--V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~D- 150 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN--------NGN--VSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNED- 150 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET--------TSC--EEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETT-
T ss_pred CCcEEEEEECCCCCEEEEEeC--------CCc--EEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCC-
Confidence 446889999999999998764 233 44446543 222222 1110 01136689999999999886321
Q ss_pred CCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe--------eecC-----CC
Q 007620 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--------KDFG-----TP 174 (595)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~--------~~lt-----~~ 174 (595)
| .|-++++ ++.. ..+. ..
T Consensus 151 ---------------------G---------------------------tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~ 182 (588)
T 2j04_A 151 ---------------------G---------------------------ELQFFSIRKNSENTPEFYFESSIRLSDAGSK 182 (588)
T ss_dssp ---------------------S---------------------------EEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred ---------------------C---------------------------EEEEEECCCCccccccceeeeeeeccccccc
Confidence 1 2223333 2211 1121 11
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE----EeccCCCCccCCccccccccCCCCceee
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR----ELCDLPPAEDIPVCYNSVREGMRSISWR 250 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (595)
..+..++||||| |+..+.+ ..+.+||+.++... .+... ....+..+.|+
T Consensus 183 ~~V~sVawSPdg--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~~~------------h~~~V~svaFs 235 (588)
T 2j04_A 183 DWVTHIVWYEDV--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQNA------------SRRKITDLKIV 235 (588)
T ss_dssp CCEEEEEEETTE--EEEEETT-------------CCEEEECCCSSSSCCCEEEEECC------------CSSCCCCEEEE
T ss_pred ccEEEEEEcCCc--EEEEeCC-------------CeEEEEECCCCccccceeeeccc------------ccCcEEEEEEE
Confidence 245688999999 5555432 36889998876532 23111 01124567888
Q ss_pred cCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc-ccCccccceee--cCCCcEEEEEEeecccceEEE
Q 007620 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSW--CDDSLALVNETWYKTSQTRTW 327 (595)
Q Consensus 251 pdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~L~ 327 (595)
|. .|+.. ....+.+|+. .+++...+. .....+..+.| |||+..++.. .+++. +||
T Consensus 236 --g~-~LASa-------------~~~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a--~edG~-klw 293 (588)
T 2j04_A 236 --DY-KVVLT-------------CPGYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMS--NKTSY-KVL 293 (588)
T ss_dssp --TT-EEEEE-------------CSSEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC--SSCEE-EEE
T ss_pred --CC-EEEEE-------------eCCeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE--cCCCC-EEE
Confidence 33 24332 1246777786 444442332 34445677899 9999766653 23344 677
Q ss_pred EEe
Q 007620 328 LVC 330 (595)
Q Consensus 328 ~~d 330 (595)
.+|
T Consensus 294 ~~d 296 (588)
T 2j04_A 294 LED 296 (588)
T ss_dssp ESS
T ss_pred eec
Confidence 754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-05 Score=74.55 Aligned_cols=214 Identities=12% Similarity=0.113 Sum_probs=118.8
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecc-cCCCc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt-~~~~~ 83 (595)
.+.|.|+. ++.. +.+.. ....+....|+|||+.|+..+. ...|.++|+.+++..... ....
T Consensus 36 ~v~lWd~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~h~~- 98 (304)
T 2ynn_A 36 RVELWNYE----TQVEVRSIQV--TETPVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD- 98 (304)
T ss_dssp EEEEEETT----TTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-
T ss_pred cEEEEECC----CCceeEEeec--cCCcEEEEEEeCCCCEEEEECC----------CCEEEEEECCCCcEEEEEeCCCC-
Confidence 46777887 4433 34442 2225778899999998876542 256777799888754433 2222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
.+..+.|+|+++.|+....+ ..|.++|
T Consensus 99 ----~v~~~~~~~~~~~l~sgs~D-------------------------------------------------~~v~lWd 125 (304)
T 2ynn_A 99 ----YIRSIAVHPTKPYVLSGSDD-------------------------------------------------LTVKLWN 125 (304)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEE
T ss_pred ----cEEEEEEcCCCCEEEEECCC-------------------------------------------------CeEEEEE
Confidence 46789999999987764221 1233334
Q ss_pred C-CC-Ceee-cC-CCCeeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccc
Q 007620 164 L-DG-TAKD-FG-TPAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (595)
Q Consensus 164 ~-~g-~~~~-lt-~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~ 237 (595)
+ ++ ...+ +. ....+..++|+|+ +..|+....+ ..+.+||+..+.. ..+....
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-------------~~v~iwd~~~~~~~~~~~~~~--------- 183 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQ--------- 183 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT-------------SEEEEEETTCSSCSEEEECCC---------
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC-------------CeEEEEECCCCCccceeccCC---------
Confidence 4 22 2222 22 2234568899994 6666655432 3688899864432 2221110
Q ss_pred cccccCCCCceeec--CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEE
Q 007620 238 NSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALV 314 (595)
Q Consensus 238 ~~~~~~~~~~~wsp--dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~ 314 (595)
........|+| ++.. |+.. .....+.+||+ ..++. ..+......+..+.|+|++..|+
T Consensus 184 ---~~~v~~~~~~~~~~~~~-l~s~------------s~D~~i~iWd~---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 184 ---ERGVNYVDYYPLPDKPY-MITA------------SDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp ---TTCEEEEEECCSTTCCE-EEEE------------ETTSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred ---cCcEEEEEEEEcCCCCE-EEEE------------cCCCeEEEEeC---CCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 00112345554 4442 2221 12346777786 32232 23333445567789999998877
Q ss_pred EEEeecccceEEEEEeCCCC
Q 007620 315 NETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 315 ~~~~~~~~~~~L~~~d~~~~ 334 (595)
... .++ .|.++|+.+.
T Consensus 245 s~s--~Dg--~i~iWd~~~~ 260 (304)
T 2ynn_A 245 SGS--EDG--TLKIWNSSTY 260 (304)
T ss_dssp EEE--TTS--CEEEEETTTC
T ss_pred EEc--CCC--eEEEEECCCC
Confidence 654 234 4556677763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00012 Score=74.14 Aligned_cols=134 Identities=7% Similarity=-0.011 Sum_probs=67.7
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc-cCCCCceeecCCCeeE
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR-EGMRSISWRADKPSTL 257 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~wspdg~~~l 257 (595)
.+.+++++..++|... . ..++++|+.++..+.+...+....... ..+.. .+...+..+||++. +
T Consensus 217 ~~~~~~~~~~~~~~~~-~------------~~v~vid~~~~~~~v~~~~~~~~~~~~-~~~~~p~g~~~~~~s~d~~~-l 281 (373)
T 2mad_H 217 QPAQANKSGRIVWPVY-S------------GKILQADISAAGATNKAPIDALSGGRK-ADTWRPGGWQQVAYLKSSDG-I 281 (373)
T ss_pred cceeEecCCEEEEEcC-C------------ceEEEEeccCCcceEeeeeeecCCccc-ccceecCceEeEEECCCCCE-E
Confidence 4667888888777753 1 268889987665444432221100000 00000 01112456777663 5
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
|.... .+.........+.++++|. ..++...-.........+.|||||+.++|..+. +...|.++|+++.
T Consensus 282 yV~~~--~~~~~~~~~~~~~V~VID~---~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~--~~~~V~ViD~~t~ 351 (373)
T 2mad_H 282 YLLTS--EQSAWKLHAAAKEVTSVTG---LVGQTSSQISLGHDVDAISVAQDGGPDLYALSA--GTEVLHIYDAGAG 351 (373)
T ss_pred EEEec--cCCcccccCCCCeEEEEEC---CCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC--CCCeEEEEECCCC
Confidence 44311 1100000011246888886 333443222344457789999999954444322 2248999999884
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-05 Score=77.83 Aligned_cols=135 Identities=12% Similarity=0.162 Sum_probs=84.0
Q ss_pred eeEEEecCCCCCCCCceeeecCC---CCCcccceEEccC----CCEEEEEEecccccccCCCceEEEEEECCCCceEecc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYP---DGAKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~---~~~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (595)
.|.|+|+.. +...+.+..+. ....+....|+|+ |+.|+.... ...|.++++.+++.....
T Consensus 45 ~v~vw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~ 111 (366)
T 3k26_A 45 RVTLYECHS---QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS----------RGIIRIINPITMQCIKHY 111 (366)
T ss_dssp EEEEEEECG---GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET----------TCEEEEECTTTCCEEEEE
T ss_pred EEEEEEcCC---CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC----------CCEEEEEEchhceEeeee
Confidence 477888872 33444444322 2235788999999 555555432 357888899888755443
Q ss_pred c-CCCccccccccceEEec-CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeec
Q 007620 79 E-SPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (595)
Q Consensus 79 ~-~~~~~~~~~~~~~~Wsp-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (595)
. ... .+..+.|+| +++.|+.... .
T Consensus 112 ~~~~~-----~i~~~~~~~~~~~~l~s~~~-------------------------------------------------d 137 (366)
T 3k26_A 112 VGHGN-----AINELKFHPRDPNLLLSVSK-------------------------------------------------D 137 (366)
T ss_dssp ESCCS-----CEEEEEECSSCTTEEEEEET-------------------------------------------------T
T ss_pred cCCCC-----cEEEEEECCCCCCEEEEEeC-------------------------------------------------C
Confidence 3 222 577899999 8887766421 1
Q ss_pred ceEEEEcC-CCCe-eec---C-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 157 AQLVLGSL-DGTA-KDF---G-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 157 ~~l~~~d~-~g~~-~~l---t-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
..|.++|+ +++. ..+ . .......++|+|+|+.|+....+ ..+.+||+.+++
T Consensus 138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~ 194 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKR 194 (366)
T ss_dssp SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHH
T ss_pred CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCc
Confidence 23555566 3432 223 1 23356789999999998877642 368889987653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0001 Score=71.90 Aligned_cols=231 Identities=10% Similarity=0.001 Sum_probs=126.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+..+.. ++ .+.+.. +. .......++|||+.+ + +. .....|+++++++|+.+.+........
T Consensus 51 ~i~~~~~~----~~-~~~~~~-~~-~~~~~l~~~~dg~l~-v-~~--------~~~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 51 RTWAWSDD----GQ-LSPEMH-PS-HHQNGHCLNKQGHLI-A-CS--------HGLRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp EEEEEETT----SC-EEEEES-SC-SSEEEEEECTTCCEE-E-EE--------TTTTEEEEECSTTCCEEEEECEETTEE
T ss_pred EEEEEECC----CC-eEEEEC-CC-CCcceeeECCCCcEE-E-Ee--------cCCCeEEEEcCCCCcEEEEeeccCCCC
Confidence 46666765 55 555552 22 246788999999843 3 32 234679999998888776643211110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
...+..+.++|||+. +++... . |.. ..... .....+ .....||.++.+
T Consensus 114 ~~~~~~i~~d~~G~l-~vtd~~-~--------------------g~~---~~~~~-~~~~~~------~~~~~l~~~~~~ 161 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSL-WFSDPT-Y--------------------GID---KPEEG-YGGEME------LPGRWVFRLAPD 161 (296)
T ss_dssp CCCCCCEEECTTSCE-EEEECS-H--------------------HHH---CGGGS-SCCCCC------SSSCEEEEECTT
T ss_pred CCCCCCEEECCCCCE-EEECCc-c--------------------ccc---ccccc-cccccc------CCCcEEEEECCC
Confidence 112347899999984 443110 0 000 00000 000000 013478888887
Q ss_pred CCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceE---EEeccCCCCccCCcccccc
Q 007620 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV---RELCDLPPAEDIPVCYNSV 240 (595)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~---~~l~~~~~~~~~~~~~~~~ 240 (595)
|+.+.+... .....++|+|||+.| ++... ...|+++++. .+.. ..+.... .
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~--~--------- 217 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTG------------DNATHRYCLNARGETEYQGVHFTVE--P--------- 217 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEE-EEETT------------TTEEEEEEECSSSCEEEEEEEECCS--S---------
T ss_pred CCEEEeecCCCCCccEEECCCCCEE-EEeCC------------CCeEEEEEECCCCcCcCCCeEeeCC--C---------
Confidence 766655433 234578999999998 66432 2378888875 3433 2221211 0
Q ss_pred ccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceee-cCCCcEEEEEEee
Q 007620 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW-CDDSLALVNETWY 319 (595)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~w-spDg~~l~~~~~~ 319 (595)
..+..+.+.++|. |+.. . ...+++++. +|.....+..... ...+.| +||+..|+....
T Consensus 218 -~~p~~i~~d~~G~--l~v~-~------------~~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~- 276 (296)
T 3e5z_A 218 -GKTDGLRVDAGGL--IWAS-A------------GDGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS- 276 (296)
T ss_dssp -SCCCSEEEBTTSC--EEEE-E------------TTEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-
T ss_pred -CCCCeEEECCCCC--EEEE-c------------CCeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-
Confidence 1134577888886 5433 1 235666674 4322223332233 677888 588876655431
Q ss_pred cccceEEEEEeCCCC
Q 007620 320 KTSQTRTWLVCPGSK 334 (595)
Q Consensus 320 ~~~~~~L~~~d~~~~ 334 (595)
..||++++.++
T Consensus 277 ----~~l~~~~~~~~ 287 (296)
T 3e5z_A 277 ----TEFWSIETNVR 287 (296)
T ss_dssp ----TEEEEEECSCC
T ss_pred ----CeEEEEEcccc
Confidence 27999998773
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-05 Score=78.73 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=63.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce----EEEeccCCCCccCCccccccccCCCCceeec
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
.+..++|+|++..++++... ...|.+||+..+. ...+... ......+.|+|
T Consensus 233 ~v~~v~~~p~~~~~l~s~~~------------dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~v~~i~~~p 287 (430)
T 2xyi_A 233 VVEDVAWHLLHESLFGSVAD------------DQKLMIWDTRNNNTSKPSHTVDAH-------------TAEVNCLSFNP 287 (430)
T ss_dssp CEEEEEECSSCTTEEEEEET------------TSEEEEEETTCSCSSSCSEEEECC-------------SSCEEEEEECS
T ss_pred CEeeeEEeCCCCCEEEEEeC------------CCeEEEEECCCCCCCcceeEeecC-------------CCCeEEEEeCC
Confidence 45689999966555555432 2378899987542 2222111 11234688999
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC-ceeccccCccccceeecCCCcE-EEEEEeecccceEEEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLV 329 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~-~~~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~ 329 (595)
+++..++.. .....+.++|+ ...+. ...+......+..+.|+|++.. |+... ..+ .|.++
T Consensus 288 ~~~~~l~tg------------~~dg~v~vwd~--~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~--~i~iw 349 (430)
T 2xyi_A 288 YSEFILATG------------SADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDR--RLHVW 349 (430)
T ss_dssp SCTTEEEEE------------ETTSEEEEEET--TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTS--CCEEE
T ss_pred CCCCEEEEE------------eCCCeEEEEeC--CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCC--cEEEE
Confidence 987523222 12245777776 12122 2333344556788999999864 44443 234 34455
Q ss_pred eCCC
Q 007620 330 CPGS 333 (595)
Q Consensus 330 d~~~ 333 (595)
|+..
T Consensus 350 d~~~ 353 (430)
T 2xyi_A 350 DLSK 353 (430)
T ss_dssp EGGG
T ss_pred eCCC
Confidence 5544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-05 Score=88.10 Aligned_cols=203 Identities=12% Similarity=0.069 Sum_probs=114.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+...+|||||+.||.... ...|.+++..+++......... .+..+.|+| |++|+....
T Consensus 19 ~V~~lafspdg~~lAsgs~----------Dg~I~lw~~~~~~~~~~~~~~~-----~V~~l~fsp-g~~L~S~s~----- 77 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV----------TGEVHIYGQQQVEVVIKLEDRS-----AIKEMRFVK-GIYLVVINA----- 77 (902)
T ss_dssp CEEEEEEETTTTEEEEEET----------TSEEEEECSTTCEEEEECSSCC-----CEEEEEEET-TTEEEEEET-----
T ss_pred CcEEEEECCCCCEEEEEeC----------CCEEEEEeCCCcEEEEEcCCCC-----CEEEEEEcC-CCEEEEEEC-----
Confidence 4888999999998887653 2457777887766544322222 577899999 886555421
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l 189 (595)
...|.++|+ +++ ...+.....+..++|+|||++|
T Consensus 78 --------------------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 78 --------------------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWM 113 (902)
T ss_dssp --------------------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEE
T ss_pred --------------------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEE
Confidence 123444555 343 2233333456789999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
+....+ ..+.+||+.++......-...... ...+.+.......+.|+|++...++..
T Consensus 114 ~sgs~d-------------g~V~lwd~~~~~~~~~~i~~~~~~-~~~~~~h~~~V~sl~~sp~~~~~l~~g--------- 170 (902)
T 2oaj_A 114 LIGLQN-------------GSMIVYDIDRDQLSSFKLDNLQKS-SFFPAARLSPIVSIQWNPRDIGTVLIS--------- 170 (902)
T ss_dssp EEEETT-------------SCEEEEETTTTEEEEEEECCHHHH-HTCSSSCCCCCCEEEEETTEEEEEEEE---------
T ss_pred EEEcCC-------------CcEEEEECCCCccccceecccccc-ccccccCCCCeEEEEEccCCCCEEEEE---------
Confidence 877642 368899998776532110000000 000011112245689999754333321
Q ss_pred cccCCcceEEeccCCCCCCCCcee-cccc------------------CccccceeecCCCcEEEEEEeecccceEEEEEe
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEI-LHKL------------------DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~-l~~~------------------~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d 330 (595)
.....+ +||+ ..++... +... ...+..+.|+|||..|+... .++ .|.++|
T Consensus 171 ---~~dg~v-lWd~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs--~Dg--~i~lWd 239 (902)
T 2oaj_A 171 ---YEYVTL-TYSL---VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH--EDN--SLVFWD 239 (902)
T ss_dssp ---CSSCEE-EEET---TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE--TTC--CEEEEE
T ss_pred ---eCCCcE-EEEC---CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE--CCC--eEEEEE
Confidence 112345 6675 3223221 1111 13467889999999887754 234 466668
Q ss_pred CCC
Q 007620 331 PGS 333 (595)
Q Consensus 331 ~~~ 333 (595)
+.+
T Consensus 240 ~~~ 242 (902)
T 2oaj_A 240 ANS 242 (902)
T ss_dssp TTT
T ss_pred CCC
Confidence 766
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00016 Score=72.13 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=82.4
Q ss_pred cccceEEccC---CCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecC----CcEEEE
Q 007620 32 KINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN----STLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd----g~~l~~ 103 (595)
.+...+|+|+ |+.++++... + ..|.++++.+++. ..+...........+..+.|+|+ |+.|+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~-------~--~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVG-------S--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEE-------T--TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECC-------C--CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 5778999985 6666665543 2 3677778876543 33432211111124678999999 555555
Q ss_pred EecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-eecC-CCCeeeee
Q 007620 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTAV 180 (595)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~~lt-~~~~~~~~ 180 (595)
... ...|.++++ +++. ..+. ....+..+
T Consensus 91 ~~~-------------------------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AGS-------------------------------------------------RGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EET-------------------------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ecC-------------------------------------------------CCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 421 124555666 4432 2332 33456789
Q ss_pred EECC-CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 181 EPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 181 ~~Sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
.|+| +++.|+....+ ..|.+||+.+++... +..... .......+.|+|++..
T Consensus 122 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGVEG----------HRDEVLSADYDLLGEK 175 (366)
T ss_dssp EECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECSTTS----------CSSCEEEEEECTTSSE
T ss_pred EECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEeccccc----------ccCceeEEEECCCCCE
Confidence 9999 78887776532 368999988665433 321110 0112346889999873
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00015 Score=73.67 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=76.0
Q ss_pred eeeeeEECC-CCCeEEEEEcccCccccccCcccceeEEEEcCC-C-ceEEEeccCCCCccCCccccccccCCCCceeecC
Q 007620 176 VYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-G-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (595)
Q Consensus 176 ~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (595)
....+.|+| ++..|+....+ ..+.+||+. + ...+.+... ......+.|+||
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D-------------~~v~~wd~~~~~~~~~~~~~h-------------~~~v~~v~~~p~ 260 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCD-------------TTVRLWDLRITSRAVRTYHGH-------------EGDINSVKFFPD 260 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETT-------------SCEEEEETTTTCCCCEEECCC-------------SSCCCEEEECTT
T ss_pred CeEEEEeecCCCCEEEEEECC-------------CeEEEEECCCCCcceEEECCc-------------CCCeEEEEEecC
Confidence 345678876 67766655432 368889976 3 233333221 112356889999
Q ss_pred CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc-cc-------CccccceeecCCCcEEEEEEeecccce
Q 007620 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL-------DLRFRSVSWCDDSLALVNETWYKTSQT 324 (595)
Q Consensus 253 g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-~~-------~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (595)
++. ++.. .....+.+||+ ..++..... .. ...+..+.|+|+|..++... .++
T Consensus 261 ~~~-l~s~------------s~D~~i~lwd~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg-- 320 (380)
T 3iz6_a 261 GQR-FGTG------------SDDGTCRLFDM---RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--SNG-- 320 (380)
T ss_dssp SSE-EEEE------------CSSSCEEEEET---TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--TTS--
T ss_pred CCe-EEEE------------cCCCeEEEEEC---CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--CCC--
Confidence 973 3221 12235666675 322322211 11 11256789999999877653 223
Q ss_pred EEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 325 RTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 325 ~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.|+++|+..++ ....+.. ..-... ...+.|+|||+.|+...
T Consensus 321 ~i~vwd~~~~~-~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 321 DCYVWDTLLAE-MVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CEEEEETTTCC-EEEEECCSCSSCCCC-----CCEEEECSSSSEEEEEC
T ss_pred CEEEEECCCCc-eEEEEecccCCCCCc-----eEEEEECCCCCEEEEee
Confidence 57777876631 1122210 000000 11278999999876554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00084 Score=68.97 Aligned_cols=58 Identities=21% Similarity=0.461 Sum_probs=40.5
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+-..||+++ .||... ...|+++|+.+|+..++...... ...+.++.|+|||+.|+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-----------d~tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspdg~~lasg 165 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVG 165 (420)
T ss_dssp CBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEE
T ss_pred ceeEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecCC--CCcEEEEEECCCCCEEEEE
Confidence 4567999865 666543 25688889999987766543221 1146799999999988775
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00075 Score=67.89 Aligned_cols=90 Identities=19% Similarity=0.021 Sum_probs=51.3
Q ss_pred eeeEEEecCCCCCCCCce-eeecCCCCCcccceEEccCCCEEEEEEecccc--cccCCCceEEEEEECCCCceEecccCC
Q 007620 5 TGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEE--DNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~--~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
..|++.|+. +++.. .|. .+.... ..+||||++|+........ .+ +....|.++|+++++...-....
T Consensus 59 ~~V~ViD~~----t~~v~~~I~---vG~~P~-va~spDG~~lyVan~~~~r~~~G--~~~~~VsviD~~t~~v~~~I~v~ 128 (386)
T 3sjl_D 59 TQQFVIDGE----AGRVIGMID---GGFLPN-PVVADDGSFIAHASTVFSRIARG--ERTDYVEVFDPVTLLPTADIELP 128 (386)
T ss_dssp EEEEEEETT----TTEEEEEEE---ECSSCE-EEECTTSSCEEEEEEEEEETTEE--EEEEEEEEECTTTCCEEEEEEET
T ss_pred CEEEEEECC----CCeEEEEEE---CCCCCc-EEECCCCCEEEEEcccccccccC--CCCCEEEEEECCCCeEEEEEECC
Confidence 356777776 45443 332 233344 9999999987665421000 00 12356999999998754322111
Q ss_pred C---ccccccccceEEecCCcEEEEE
Q 007620 82 D---ICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 82 ~---~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
. .........+.++|||++|++.
T Consensus 129 ~g~r~~~g~~P~~~a~spDGk~lyVa 154 (386)
T 3sjl_D 129 DAPRFLVGTYPWMTSLTPDGKTLLFY 154 (386)
T ss_dssp TCCCCCBSCCGGGEEECTTSSEEEEE
T ss_pred CccccccCCCCceEEEcCCCCEEEEE
Confidence 1 0001123478999999998885
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00019 Score=77.43 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=124.7
Q ss_pred eeEEEecCCCCCCC-----CceeeecCCCCCc-ccceEEcc--CCCEEEEEEecccccccCCCceEEEEEECCCC-----
Q 007620 6 GIGIHRLLPDDSLG-----PEKEVHGYPDGAK-INFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----- 72 (595)
Q Consensus 6 ~~~~~~~~~~~~~g-----~~~~lt~~~~~~~-~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----- 72 (595)
.|.|+|+. ++ ..+.+.. .... +....||| ||++||.... + ..|.++++.++
T Consensus 40 ~v~v~~~~----~~~~~~~~~~~~~~--h~~~~v~~~~~sp~~~~~~l~s~~~--------d--g~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 40 SAFVRCLD----DGDSKVPPVVQFTG--HGSSVVTTVKFSPIKGSQYLCSGDE--------S--GKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEEEEECC----SSCCSSCSEEEECT--TTTSCEEEEEECSSTTCCEEEEEET--------T--SEEEEEEEEEEGGGTE
T ss_pred eEEEEECC----CCCCccccceEEec--CCCceEEEEEECcCCCCCEEEEecC--------C--CEEEEEeCCCCccccc
Confidence 57888987 44 3444442 2235 78999999 9998887653 2 34555566544
Q ss_pred -ceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccce
Q 007620 73 -EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (595)
Q Consensus 73 -~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (595)
+...+..... ....+..+.|+|||+.|+....+..
T Consensus 104 ~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~------------------------------------------ 139 (615)
T 1pgu_A 104 VEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRD------------------------------------------ 139 (615)
T ss_dssp EEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSS------------------------------------------
T ss_pred ccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCC------------------------------------------
Confidence 2222211110 0125678999999999887632100
Q ss_pred EEeecceEEEEcCCCCeeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCC
Q 007620 152 DYYTTAQLVLGSLDGTAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPP 229 (595)
Q Consensus 152 ~~~~~~~l~~~d~~g~~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~ 229 (595)
....|++++.......+.. ...+..+.|+|+++.++++.... ..+.+||+.+++. ..+.....
T Consensus 140 ---~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------~~v~vwd~~~~~~~~~~~~~~~ 204 (615)
T 1pgu_A 140 ---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHHK 204 (615)
T ss_dssp ---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSSC
T ss_pred ---CccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC------------CcEEEEeCCCcceeeeecccCC
Confidence 0123444552222333322 23566899999998555554332 3788999876654 33322110
Q ss_pred CccCCccccccccCCCCceeecC-CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-c-c---ccCccccc
Q 007620 230 AEDIPVCYNSVREGMRSISWRAD-KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-L-H---KLDLRFRS 303 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspd-g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l-~---~~~~~~~~ 303 (595)
. . .....+.|+|+ ++. |+.. .....+.++++ ..++... + . .....+..
T Consensus 205 ~-~---------~~v~~~~~~~~~~~~-l~~~------------~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 205 Q-G---------SFVRDVEFSPDSGEF-VITV------------GSDRKISCFDG---KSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp T-T---------CCEEEEEECSTTCCE-EEEE------------ETTCCEEEEET---TTCCEEEECCBTTBCCCSCEEE
T ss_pred C-C---------ceEEEEEECCCCCCE-EEEE------------eCCCeEEEEEC---CCCCEeEEecccccccCCceEE
Confidence 0 0 01345889999 773 3332 11235677775 3334333 3 2 33455778
Q ss_pred eeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+.|+ ++..++.... ++ .|.++|+.+
T Consensus 259 ~~~~-~~~~l~~~~~--d~--~i~~wd~~~ 283 (615)
T 1pgu_A 259 LSWL-DSQKFATVGA--DA--TIRVWDVTT 283 (615)
T ss_dssp EEES-SSSEEEEEET--TS--EEEEEETTT
T ss_pred EEEc-CCCEEEEEcC--CC--cEEEEECCC
Confidence 8999 8887766541 23 577778876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00045 Score=68.16 Aligned_cols=230 Identities=12% Similarity=0.032 Sum_probs=119.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....|||||+.|+-... ...|.+.+...+........... ......|+++++.|+....+
T Consensus 88 ~V~~~~~s~dg~~l~s~~~----------d~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~s~d---- 149 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSW----------DGTLRLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRD---- 149 (340)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSSCEEEEETT----
T ss_pred CEEEEEECCCCCEEEEEcc----------cccceEEeecccceeeeecCCCC----ceeEEEEeecCccceeecCC----
Confidence 5888999999998876542 24577778776654444322221 34466788888877664211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeec--C-CCCeeeeeEECCCCC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDF--G-TPAVYTAVEPSPDQK 187 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~l--t-~~~~~~~~~~SpDg~ 187 (595)
..+.++++.+. ...+ . .......+.|++++.
T Consensus 150 ---------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 150 ---------------------------------------------KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp ---------------------------------------------SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred ---------------------------------------------CeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 12223333221 1111 1 122345678888875
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCceEEE-eccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
..++.+... ...+.+||+.+++... +.... .....+.|+||++. |+..
T Consensus 185 ~~~~~s~~~-----------d~~i~i~d~~~~~~~~~~~~h~-------------~~v~~~~~s~~~~~-l~s~------ 233 (340)
T 4aow_A 185 NPIIVSCGW-----------DKLVKVWNLANCKLKTNHIGHT-------------GYLNTVTVSPDGSL-CASG------ 233 (340)
T ss_dssp SCEEEEEET-----------TSCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSE-EEEE------
T ss_pred CcEEEEEcC-----------CCEEEEEECCCCceeeEecCCC-------------CcEEEEEECCCCCE-EEEE------
Confidence 443332221 2368889988665433 22111 11345789999873 3221
Q ss_pred CcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeeccc
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~ 346 (595)
.....+.++|. ..++..........+..+.|+|++..++... ++ .|.++|+.++ ..........
T Consensus 234 ------s~Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---d~--~i~iwd~~~~--~~~~~~~~~~ 297 (340)
T 4aow_A 234 ------GKDGQAMLWDL---NEGKHLYTLDGGDIINALCFSPNRYWLCAAT---GP--SIKIWDLEGK--IIVDELKQEV 297 (340)
T ss_dssp ------ETTCEEEEEET---TTTEEEEEEECSSCEEEEEECSSSSEEEEEE---TT--EEEEEETTTT--EEEEEECCC-
T ss_pred ------eCCCeEEEEEe---ccCceeeeecCCceEEeeecCCCCceeeccC---CC--EEEEEECCCC--eEEEeccccc
Confidence 11235677776 3222222223334566788999987655442 23 5677787763 1111111110
Q ss_pred c-cccC-CC-CCCCeeeCCCCCEEEEEe
Q 007620 347 E-NVYS-DP-GSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 347 ~-~~~~-~~-~~~~~~~~~dg~~l~~~~ 371 (595)
. .... .+ ....+.|+|||+.|+...
T Consensus 298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp ------CCCCCEEEEEECTTSSEEEEEE
T ss_pred eeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 0 0000 00 011278999999876554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00034 Score=68.31 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=130.8
Q ss_pred eeEEEecCCCCCCCCceeeecCCC-CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|.|+. +|+..++..+.. ...+....|+|||++||-.+. ...|.++++.+++..+......
T Consensus 46 tV~iWd~~----tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~----------Dg~v~iw~~~~~~~~~~~~~h~-- 109 (318)
T 4ggc_A 46 SVYLWSAS----SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----------SAEVQLWDVQQQKRLRNMTSHS-- 109 (318)
T ss_dssp EEEEEETT----TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCS--
T ss_pred EEEEEECC----CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC----------CCcEEEeecCCceeEEEecCcc--
Confidence 47889998 777665543332 235788999999998876542 2456777998887544432211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.....++++++.|+..... + .+...+.
T Consensus 110 ----~~~~~~~~~~~~l~s~~~~----------------------~---------------------------~~~~~~~ 136 (318)
T 4ggc_A 110 ----ARVGSLSWNSYILSSGSRS----------------------G---------------------------HIHHHDV 136 (318)
T ss_dssp ----SCEEEEEEETTEEEEEETT----------------------S---------------------------EEEEEET
T ss_pred ----ceEEEeecCCCEEEEEecC----------------------C---------------------------ceEeeec
Confidence 1234566677766554211 0 1111111
Q ss_pred -CC-C-eeec-CCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEE--eccCCCCccCCcccc
Q 007620 165 -DG-T-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIPVCYN 238 (595)
Q Consensus 165 -~g-~-~~~l-t~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--l~~~~~~~~~~~~~~ 238 (595)
.+ . ...+ ..........++++|+.|+....+ ..+.+||+.+++... +.....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~--------- 194 (318)
T 4ggc_A 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFTQ--------- 194 (318)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCSEEECC---------
T ss_pred CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCcccccceeeecc---------
Confidence 11 1 1111 122334578899999988766542 368888987543211 000000
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEe
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (595)
.........++|++...+... . . .....+.+++. ...................|++++..++....
T Consensus 195 -~~~~v~~~~~~~~~~~~~~~~-~-~--------~~~~~i~lwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 195 -HQGAVKAVAWCPWQSNVLATG-G-G--------TSDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp -CCSCEEEEEECTTSTTEEEEE-E-C--------TTTCEEEEEET---TTCCEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred -cCCceEEEEecCCCCcEEEEE-e-c--------CCCCEEEEEec---ccccccccccceeeeeeeeecccccceEEEEE
Confidence 000122456777766433222 1 1 11234555564 22233333333445667889999887665443
Q ss_pred ecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 319 YKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 319 ~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
..++ .|.++|+.+++ ....+.. ..+.. +.|+|||+.|+...
T Consensus 261 ~~d~--~i~iwd~~~~~-~~~~l~gH~~~V~~---------l~~spdg~~l~S~s 303 (318)
T 4ggc_A 261 FAQN--QLVIWKYPTMA-KVAELKGHTSRVLS---------LTMSPDGATVASAA 303 (318)
T ss_dssp TTTC--CEEEEETTTCC-EEEEECCCSSCEEE---------EEECTTSSCEEEEE
T ss_pred cCCC--EEEEEECCCCc-EEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 2233 57777887741 2222222 22333 78999999876544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00015 Score=70.69 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=35.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc---eEecccCCCccccccccceEEecC--CcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~---~~~lt~~~~~~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
.+...+|||||++||-.+. ++. |.++++.++. ...+..... .+..+.|+++ |+.|+-.
T Consensus 11 ~V~~~~~s~~g~~las~s~--------D~~--v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~ 73 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS--------DKT--IKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASC 73 (297)
T ss_dssp CEEEEEECTTSSEEEEEET--------TSC--EEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeC--------CCE--EEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEE
Confidence 4778899999999876553 333 4455665432 233332222 4678899864 7766654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00023 Score=70.20 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=37.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc--eEec---ccCCCccccccccceEEec--CCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPL---FESPDICLNAVFGSFVWVN--NSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~l---t~~~~~~~~~~~~~~~Wsp--dg~~l~~~ 104 (595)
.+....|||||++||.... + ..|.++++.++. .+.+ ..... .+..+.|+| |++.|+..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS--------D--QHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CEEEEEECSSSSEEEEEET--------T--SEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred ceeEEEEcCCCCEEEEeeC--------C--CeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEE
Confidence 5888999999998876542 2 345555666542 1222 22222 567899998 68877765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.001 Score=64.52 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=40.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+....| |||++||.... ...|.++++.+++......... ..+..+.|+|+++.|+..
T Consensus 20 ~v~~~~~-~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR----------DGTVRLWSKDDQWLGTVVYTGQ----GFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp CEEEEEE-EETTEEEEEET----------TSEEEEEEESSSEEEEEEEECS----SCEEEEEEETTTTEEEEE
T ss_pred CcEEEEe-cCCCEEEEEEc----------CCcEEEEECCCCEEEEEeecCC----ccEEEEEECCCCCEEEEe
Confidence 5778899 99998776542 2467777887776544433222 156789999999988875
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00028 Score=69.84 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=124.7
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|++.|+. +++.+.+.. .....+....|+|||+.++...... .....|+++++++++.+.+......
T Consensus 67 ~i~~~d~~----~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~------~~~~~i~~~d~~~~~~~~~~~~~~~-- 133 (333)
T 2dg1_A 67 NIFKINPE----TKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDF------KSTGGIFAATENGDNLQDIIEDLST-- 133 (333)
T ss_dssp EEEEECTT----TCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTS------SSCCEEEEECTTSCSCEEEECSSSS--
T ss_pred EEEEEeCC----CCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCC------CCCceEEEEeCCCCEEEEEEccCcc--
Confidence 46777765 677766652 2223577889999997443322110 1125899999998876643221110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
...+..+.++|+|+.++.. .... . .+ ....||+++.+
T Consensus 134 ~~~~~~i~~d~~g~l~v~~-~~~~--------------------~---------------~~-------~~~~l~~~~~~ 170 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTD-FRGY--------------------S---------------TN-------PLGGVYYVSPD 170 (333)
T ss_dssp CCCEEEEEECTTSCEEEEE-CCCB--------------------T---------------TB-------CCEEEEEECTT
T ss_pred CCcccceEECCCCCEEEEe-cccc--------------------c---------------cC-------CCceEEEEeCC
Confidence 1134578899999744332 1000 0 00 13468888885
Q ss_pred C-CeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC--CceEEEe-----ccCCCCccCCcc
Q 007620 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVREL-----CDLPPAEDIPVC 236 (595)
Q Consensus 166 g-~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~l-----~~~~~~~~~~~~ 236 (595)
+ +.+.+... .....++|+|||+.|+++.... ..|+++|+. ++....+ ...+..
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~------------~~i~~~d~~~~g~~~~~~~~~~~~~~~~~------ 232 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALSTDEKVLWVTETTA------------NRLHRIALEDDGVTIQPFGATIPYYFTGH------ 232 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG------------TEEEEEEECTTSSSEEEEEEEEEEECCSS------
T ss_pred CCEEEEeecCCCcccceEECCCCCEEEEEeCCC------------CeEEEEEecCCCcCcccccceEEEecCCC------
Confidence 4 55554322 2345789999999988875422 368888874 3332221 111000
Q ss_pred ccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCc------cccceeecCCC
Q 007620 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL------RFRSVSWCDDS 310 (595)
Q Consensus 237 ~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~------~~~~~~wspDg 310 (595)
..+..+.+.++|. ++.. .. ....+++++. ++.....+..... ....+.|+||+
T Consensus 233 -----~~~~~i~~d~~G~--l~v~-~~----------~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 233 -----EGPDSCCIDSDDN--LYVA-MY----------GQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp -----SEEEEEEEBTTCC--EEEE-EE----------TTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred -----CCCCceEECCCCC--EEEE-Ec----------CCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 0122466677775 4332 11 1235666674 4322223321111 35678899998
Q ss_pred cEEEEEEeec--ccceEEEEEeCCC
Q 007620 311 LALVNETWYK--TSQTRTWLVCPGS 333 (595)
Q Consensus 311 ~~l~~~~~~~--~~~~~L~~~d~~~ 333 (595)
..|+...... .....||.+++..
T Consensus 292 ~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 292 NQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp CEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CEEEEEeCccCCCCCceEEEEeccc
Confidence 6554433221 1234788888765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=73.22 Aligned_cols=137 Identities=12% Similarity=0.018 Sum_probs=83.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+..|.. +++.+.++ ++. .+....|+|||+.++.. . ..|+++++++|+.+.+........
T Consensus 72 ~i~~~d~~----~~~~~~~~-~~~--~v~~i~~~~dg~l~v~~--~----------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 72 ELHELHLA----SGRKTVHA-LPF--MGSALAKISDSKQLIAS--D----------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EEEEEETT----TTEEEEEE-CSS--CEEEEEEEETTEEEEEE--T----------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred EEEEEECC----CCcEEEEE-CCC--cceEEEEeCCCeEEEEE--C----------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 46777776 56555554 332 47788999999755432 1 349999999998777754321110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
...+..+.++|+|+. ++...... .+. ....||+++ +
T Consensus 133 ~~~~~~i~~d~~G~l-~v~~~~~~------------------------------------~~~------~~~~l~~~~-~ 168 (326)
T 2ghs_A 133 GNRSNDGRMHPSGAL-WIGTMGRK------------------------------------AET------GAGSIYHVA-K 168 (326)
T ss_dssp TEEEEEEEECTTSCE-EEEEEETT------------------------------------CCT------TCEEEEEEE-T
T ss_pred CCCCCCEEECCCCCE-EEEeCCCc------------------------------------CCC------CceEEEEEe-C
Confidence 112457889999984 44311000 000 134678888 6
Q ss_pred CCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
|+.+.+... .....++|||||+.|+++... ...|++++++
T Consensus 169 g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~------------~~~I~~~d~~ 209 (326)
T 2ghs_A 169 GKVTKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLD 209 (326)
T ss_dssp TEEEEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBC
T ss_pred CcEEEeeCCCcccCCeEEcCCCCEEEEEECC------------CCEEEEEEcc
Confidence 765554322 233578999999999887532 2378888875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00059 Score=66.35 Aligned_cols=231 Identities=9% Similarity=0.052 Sum_probs=122.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc----eEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~~ 81 (595)
.|.++|+. +++...... .....+....|+|||+.|+.... + ..|.++++.... ...+....
T Consensus 40 ~v~vw~~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------d--g~i~~~~~~~~~~~~~~~~~~~~~ 104 (313)
T 3odt_A 40 TVRLWSKD----DQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGK--------D--TMINGVPLFATSGEDPLYTLIGHQ 104 (313)
T ss_dssp EEEEEEES----SSEEEEEEE-ECSSCEEEEEEETTTTEEEEEET--------T--SCEEEEETTCCTTSCC-CEECCCS
T ss_pred cEEEEECC----CCEEEEEee-cCCccEEEEEECCCCCEEEEecC--------C--CeEEEEEeeecCCCCcccchhhcc
Confidence 47788886 554433332 22336889999999998887653 2 345555665432 22221111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. .+..+.| +++.|+....+ ..|.+
T Consensus 105 ~-----~i~~~~~--~~~~l~~~~~d-------------------------------------------------~~i~~ 128 (313)
T 3odt_A 105 G-----NVCSLSF--QDGVVISGSWD-------------------------------------------------KTAKV 128 (313)
T ss_dssp S-----CEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEE
T ss_pred c-----CEEEEEe--cCCEEEEEeCC-------------------------------------------------CCEEE
Confidence 1 3556777 56655554211 12233
Q ss_pred EcCCCC-eeecC-CCCeeeeeEECC-CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccc
Q 007620 162 GSLDGT-AKDFG-TPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (595)
Q Consensus 162 ~d~~g~-~~~lt-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~ 238 (595)
++ .++ ...+. .......+.|+| +++.|+..... ..+.+||.. .....+....
T Consensus 129 ~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~~---------- 183 (313)
T 3odt_A 129 WK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD-------------KTIKLWQND-KVIKTFSGIH---------- 183 (313)
T ss_dssp EE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT-------------SCEEEEETT-EEEEEECSSC----------
T ss_pred Ec-CCcEEEecccCCCceeEEEEccCCCCEEEEEECC-------------CCEEEEecC-ceEEEEeccC----------
Confidence 33 221 11221 223345677877 88888776542 367888833 2223322100
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEE
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
......+.|+|++. ++.. .....+.+++. ..++.. .+......+..+.|+|++. ++...
T Consensus 184 --~~~i~~~~~~~~~~--~~~~------------~~dg~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~ 243 (313)
T 3odt_A 184 --NDVVRHLAVVDDGH--FISC------------SNDGLIKLVDM---HTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG 243 (313)
T ss_dssp --SSCEEEEEEEETTE--EEEE------------ETTSEEEEEET---TTCCEEEEEECCSSCEEEEEECTTSC-EEEEE
T ss_pred --cccEEEEEEcCCCe--EEEc------------cCCCeEEEEEC---CchhhhhhhhcCCceEEEEEEecCCC-EEEEe
Confidence 01123578888876 3322 12346777776 323333 3333455677899999995 44432
Q ss_pred eecccceEEEEEeCCCCCCCcEEEeec---ccccccCCCCCCCeeeCCCCCEE
Q 007620 318 WYKTSQTRTWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNV 367 (595)
Q Consensus 318 ~~~~~~~~L~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~dg~~l 367 (595)
.++ .|.++|+.++ +....+.. .+.. +.|+++|+.+
T Consensus 244 --~dg--~v~iwd~~~~--~~~~~~~~~~~~i~~---------~~~~~~~~~~ 281 (313)
T 3odt_A 244 --EDR--TVRIWSKENG--SLKQVITLPAISIWS---------VDCMSNGDII 281 (313)
T ss_dssp --TTS--EEEEECTTTC--CEEEEEECSSSCEEE---------EEECTTSCEE
T ss_pred --cCC--EEEEEECCCC--ceeEEEeccCceEEE---------EEEccCCCEE
Confidence 223 6888898774 33222221 2222 7899999843
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00013 Score=71.99 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEe---cccCCCccccccccceEEec--CCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFESPDICLNAVFGSFVWVN--NSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~---lt~~~~~~~~~~~~~~~Wsp--dg~~l~~~ 104 (595)
.+...+|||||++||-.+. + ..|.++|+.+++... +..... .+..+.|++ +++.|+-.
T Consensus 15 ~V~~v~~s~~g~~lasgs~--------D--~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~ 77 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS--------D--RSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASC 77 (316)
T ss_dssp CEEEEEECGGGCEEEEEET--------T--TEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEE
T ss_pred eEEEeeEcCCCCEEEEEeC--------C--CeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEE
Confidence 5778999999998876542 3 345555766664322 322222 467889986 47766654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00072 Score=66.18 Aligned_cols=183 Identities=9% Similarity=0.055 Sum_probs=97.8
Q ss_pred CCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCcc
Q 007620 70 ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (595)
Q Consensus 70 ~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (595)
.+.+.++|+.... ....+.|+|+|+.|+|+...
T Consensus 33 ~~~~~~~l~~~~~-----~~egp~~~~~g~~l~~~d~~------------------------------------------ 65 (305)
T 3dr2_A 33 GDARLLTLYDQAT-----WSEGPAWWEAQRTLVWSDLV------------------------------------------ 65 (305)
T ss_dssp TTCCCEEEECCCS-----SEEEEEEEGGGTEEEEEETT------------------------------------------
T ss_pred CCCceEEEecCCc-----CccCCeEeCCCCEEEEEECC------------------------------------------
Confidence 3456666754332 23589999999988886210
Q ss_pred ceEEeecceEEEEcCCCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCC
Q 007620 150 LFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (595)
Q Consensus 150 ~~~~~~~~~l~~~d~~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~ 228 (595)
...|++++.+|+.+.+... .....+.++|||+. ++.... ...|++++.+ ++.+.+....
T Consensus 66 ------~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l-~v~~~~------------~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 66 ------GRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRL-VHCEHG------------RRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp ------TTEEEEEETTSCEEEEEESCSCEEEEEECTTSCE-EEEETT------------TTEEEEECTT-SCEEEEECEE
T ss_pred ------CCEEEEEeCCCCEEEEeCCCCccceeeECCCCCE-EEEECC------------CCEEEEECCC-CCEEEEEecc
Confidence 1345666666655444322 34457899999984 444321 1368888887 4444443211
Q ss_pred CCccCCccccccccCCCCceeecCCCeeEEEEEee-c-----CCCcccccCCcceEEeccCCCCCCCCceeccccCcccc
Q 007620 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ-D-----RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFR 302 (595)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~-d-----~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~ 302 (595)
. ..+ ......+.+.+||. +++.... . .+...........++.++. ++++.+.+. ......
T Consensus 126 ~--~~~------~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~---~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 126 A--GKR------LNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP---DGSPLQRMA-DLDHPN 191 (305)
T ss_dssp T--TEE------CSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS---SSCCCEEEE-EESSEE
T ss_pred C--CCc------cCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcC---CCCcEEEEe-cCCCCc
Confidence 0 000 01123577888886 5542100 0 0000000011246777774 445666554 223345
Q ss_pred ceeecCCCcEEEEEEeec--ccceEEEEEeCCC
Q 007620 303 SVSWCDDSLALVNETWYK--TSQTRTWLVCPGS 333 (595)
Q Consensus 303 ~~~wspDg~~l~~~~~~~--~~~~~L~~~d~~~ 333 (595)
.+.|+|||+.|+...... .....|+++++++
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 678999998655443211 0124799998876
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0004 Score=70.39 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=49.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCC---EEEEEEecccccccCCCceEEEEEECCCCceEeccc-CC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK---RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~---~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~-~~ 81 (595)
.|.+.|+. +++......+. .......|+|++. .|+.... ...|.++++.+++...... ..
T Consensus 123 ~i~iwd~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 123 TLKVWDTN----TLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTR----------GPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp EEEEEETT----TTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEES----------SSSEEEEESSSSCCCEEECCCC
T ss_pred eEEEeeCC----CCccceeccCC--CceeeeEeecCCCCCcEEEEEcC----------CCeEEEEeCCCcceeeeecCCC
Confidence 47788887 56555554333 2477888998544 6655432 3567788988776433322 22
Q ss_pred CccccccccceEEecCCcEEEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
. .+..+.|+|+++.|+++
T Consensus 187 ~-----~v~~~~~~~~~~~ll~~ 204 (408)
T 4a11_B 187 Q-----EILAVSWSPRYDYILAT 204 (408)
T ss_dssp S-----CEEEEEECSSCTTEEEE
T ss_pred C-----cEEEEEECCCCCcEEEE
Confidence 2 56789999999964443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00024 Score=71.26 Aligned_cols=221 Identities=14% Similarity=0.171 Sum_probs=117.0
Q ss_pred eeEEEecCCCCCCCCceeeecCC-CCCcccceEEccC--CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.|.|+|+. .+..+.+..+. ....+....|+|+ |+.|+.... + ..|.++++.+++...+.....
T Consensus 34 ~i~iw~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--------d--g~v~iwd~~~~~~~~~~~~~~ 99 (379)
T 3jrp_A 34 TIKIFEVE----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--------D--GKVLIWKEENGRWSQIAVHAV 99 (379)
T ss_dssp CEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--------T--SCEEEEEEETTEEEEEEEECC
T ss_pred cEEEEecC----CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc--------C--CEEEEEEcCCCceeEeeeecC
Confidence 47788886 33333322222 2235788999988 887766542 2 446666777775322211111
Q ss_pred ccccccccceEEecC--CcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 83 ICLNAVFGSFVWVNN--STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 83 ~~~~~~~~~~~Wspd--g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
....+..+.|+|+ ++.|+....+ ..|.
T Consensus 100 --~~~~v~~~~~~~~~~~~~l~~~~~d-------------------------------------------------~~i~ 128 (379)
T 3jrp_A 100 --HSASVNSVQWAPHEYGPLLLVASSD-------------------------------------------------GKVS 128 (379)
T ss_dssp --CSSCEEEEEECCGGGCSEEEEEETT-------------------------------------------------SEEE
T ss_pred --CCcceEEEEeCCCCCCCEEEEecCC-------------------------------------------------CcEE
Confidence 0115678999999 8877775211 2344
Q ss_pred EEcC-CCC---eeec-CCCCeeeeeEECC-------------CCCeEEEEEcccCccccccCcccceeEEEEcCCCce--
Q 007620 161 LGSL-DGT---AKDF-GTPAVYTAVEPSP-------------DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-- 220 (595)
Q Consensus 161 ~~d~-~g~---~~~l-t~~~~~~~~~~Sp-------------Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-- 220 (595)
++++ .+. ...+ ........+.|+| |++.|+....+ ..|.+||+.++.
T Consensus 129 v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQT 195 (379)
T ss_dssp EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT-------------SCEEEEEEETTTTE
T ss_pred EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-------------CeEEEEEecCCCcc
Confidence 4444 221 1122 1223456788999 68888777542 368888876432
Q ss_pred EEEeccCCCCccCCccccccccCCCCceeecCC--CeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC---ceecc
Q 007620 221 VRELCDLPPAEDIPVCYNSVREGMRSISWRADK--PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILH 295 (595)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg--~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~---~~~l~ 295 (595)
...+..... .......+.|+|++ ...|+.. . ....+.+|++ ..+. ...+.
T Consensus 196 ~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~-~-----------~dg~i~iwd~---~~~~~~~~~~~~ 250 (379)
T 3jrp_A 196 YVLESTLEG----------HSDWVRDVAWSPTVLLRSYLASV-S-----------QDRTCIIWTQ---DNEQGPWKKTLL 250 (379)
T ss_dssp EEEEEEECC----------CSSCEEEEEECCCCSSSEEEEEE-E-----------TTSCEEEEEE---SSTTSCCEEEES
T ss_pred eeeEEEEec----------ccCcEeEEEECCCCCCCCeEEEE-e-----------CCCEEEEEeC---CCCCccceeeee
Confidence 122211110 01113468899993 2223332 1 1234666665 2222 11222
Q ss_pred c---cCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 296 K---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 296 ~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
. ....+..+.|+|||..|+.... ++..++|.++.
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~~ 287 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKENL 287 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEEE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCCC
Confidence 1 3345678899999998776542 35456666554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00076 Score=67.16 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=54.9
Q ss_pred eeEEEecCCCCCCCCce--eeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEK--EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~--~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|+|+.. .+... .+.. ....+....|+|||+.|+.... ...|.++++.+++...+.....
T Consensus 65 ~i~iw~~~~---~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~- 128 (368)
T 3mmy_A 65 DVRCWEVQD---SGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASC----------DKTAKMWDLSSNQAIQIAQHDA- 128 (368)
T ss_dssp EEEEEEECT---TSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECSS-
T ss_pred cEEEEEcCC---CCceeEEEecc--ccCCEEEEEECcCCCEEEEEcC----------CCcEEEEEcCCCCceeeccccC-
Confidence 478888872 24442 3432 2335889999999999886542 2567778999888777654433
Q ss_pred cccccccceEE--ecCCcEEEEE
Q 007620 84 CLNAVFGSFVW--VNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~W--spdg~~l~~~ 104 (595)
.+..+.| +|+++.|+..
T Consensus 129 ----~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 129 ----PVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp ----CEEEEEEEECSSCEEEEEE
T ss_pred ----ceEEEEEEeCCCCCEEEEc
Confidence 5778999 8888877765
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=84.29 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=47.1
Q ss_pred eEEEEeCCCCceeeEecCCCCCCCcCCC-ce-EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccC
Q 007620 453 QYHILSWPLKKSSQITNFPHPYPTLASL-QK-EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAA 530 (595)
Q Consensus 453 ~l~~~d~~~~~~~~Lt~~~~~~~~~~~~-~~-e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~ 530 (595)
++|... .|+.+.+++.+.. +...+ .. +.|++ .+||.+|+|+|++|.+-. |.|+||++|++
T Consensus 4 ~~~~~~--~~~~r~~~~~~~~--~~~~~~~~e~~~~~-~~dG~~i~g~l~~P~~~~-----~~p~Vl~~HG~-------- 65 (259)
T 4ao6_A 4 SHHHHH--HGSMRHQMSWNGK--DERKLSVQERGFSL-EVDGRTVPGVYWSPAEGS-----SDRLVLLGHGG-------- 65 (259)
T ss_dssp ---------------CEECSC--CEEETTEEEEEEEE-EETTEEEEEEEEEESSSC-----CSEEEEEEC----------
T ss_pred cccccc--cCcceeeeccCCC--ccccCCceEEEEEE-eeCCeEEEEEEEeCCCCC-----CCCEEEEeCCC--------
Confidence 344443 6777777776532 22334 33 33444 579999999999998632 34999997642
Q ss_pred CcccCCCCc-ccCCCCchhHHHhccCeEEEeCCCCceeec
Q 007620 531 GQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 531 ~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
+.. .........|.||++||+|+. ++.+..|.
T Consensus 66 ------g~~~~~~~~~~~a~~la~~Gy~Vl~-~D~rG~G~ 98 (259)
T 4ao6_A 66 ------TTHKKVEYIEQVAKLLVGRGISAMA-IDGPGHGE 98 (259)
T ss_dssp ------------CHHHHHHHHHHHTTEEEEE-ECCCC---
T ss_pred ------cccccchHHHHHHHHHHHCCCeEEe-eccCCCCC
Confidence 221 111111236899999999999 77776554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00042 Score=71.57 Aligned_cols=114 Identities=13% Similarity=0.286 Sum_probs=61.3
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC-c-eEEEeccCCCCccCCccccccccCCCCceeecC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-K-LVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspd 252 (595)
..+..++|+|++++++++.... ..|.+||+.. + ....+.... .....+.|+|+
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~d------------g~v~vwd~~~~~~~~~~~~~h~-------------~~v~~i~~sp~ 332 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSAD------------KTVALWDLRNLKLKLHSFESHK-------------DEIFQVQWSPH 332 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETT------------SEEEEEETTCTTSCSEEEECCS-------------SCEEEEEECSS
T ss_pred CCeEEEEeCCCCCCEEEEEeCC------------CeEEEEeCCCCCCCeEEeecCC-------------CCEEEEEECCC
Confidence 3456899999999776665432 3688999874 2 233332111 11346889999
Q ss_pred CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCC-----------ceecc---ccCccccceeecCCCc-EEEEEE
Q 007620 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-----------PEILH---KLDLRFRSVSWCDDSL-ALVNET 317 (595)
Q Consensus 253 g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~-----------~~~l~---~~~~~~~~~~wspDg~-~l~~~~ 317 (595)
++..++.. .. ...+.++++ ...+. ...+. .....+..+.|+|++. .++...
T Consensus 333 ~~~~l~s~-~~-----------d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 333 NETILASS-GT-----------DRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp CTTEEEEE-ET-----------TSCCEEEEG--GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCEEEEE-eC-----------CCcEEEEeC--CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 87533222 11 124455554 11111 12222 1233467899999998 455543
Q ss_pred eecccceEEEEE
Q 007620 318 WYKTSQTRTWLV 329 (595)
Q Consensus 318 ~~~~~~~~L~~~ 329 (595)
.++...||.+
T Consensus 399 --~dg~i~iw~~ 408 (430)
T 2xyi_A 399 --EDNIMQVWQM 408 (430)
T ss_dssp --TTSEEEEEEE
T ss_pred --CCCCEEEeEc
Confidence 2343445544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0038 Score=61.69 Aligned_cols=230 Identities=7% Similarity=-0.112 Sum_probs=116.7
Q ss_pred ceEEEEcC-CCCe-eecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccC
Q 007620 157 AQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDI 233 (595)
Q Consensus 157 ~~l~~~d~-~g~~-~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~ 233 (595)
..|.++|+ +++. ..+........++++||| +|+++... ...|+++|..+++.. .+.-......
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~------------~~~v~~iD~~t~~~~~~i~~g~~~~~- 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIW------------DYRIFIINPKTYEITGYIECPDMDME- 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBS------------CSEEEEEETTTTEEEEEEECTTCCTT-
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECC------------CCeEEEEECCCCeEEEEEEcCCcccc-
Confidence 46778888 5654 455433444578899998 66666422 237899999877654 3321110000
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEE
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l 313 (595)
...+..+.+ ++. .||.... ...+.+.++|. ..++.............+.++|||+.+
T Consensus 130 -------~~~p~~i~~--~~~-~lyv~~~----------~~~~~v~viD~---~t~~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 130 -------SGSTEQMVQ--YGK-YVYVNCW----------SYQNRILKIDT---ETDKVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp -------TCBCCCEEE--ETT-EEEEEEC----------TTCCEEEEEET---TTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred -------CCCcceEEE--ECC-EEEEEcC----------CCCCEEEEEEC---CCCeEEEEEEcCCCccceEEcCCCCEE
Confidence 001223444 232 2544311 01346777785 323433322223344567889999855
Q ss_pred EEEEee-cc-----cceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCC
Q 007620 314 VNETWY-KT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (595)
Q Consensus 314 ~~~~~~-~~-----~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g 387 (595)
+..... .. ....|+++|++++ +........... .| ..+.+++||+.+|+.. . .++
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~~~~g~---~p--~~la~~~d~~~lyv~~------~-~v~----- 247 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFKFKLGD---WP--SEVQLNGTRDTLYWIN------N-DIW----- 247 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEECCTTC---CC--EEEEECTTSCEEEEES------S-SEE-----
T ss_pred EEECCCccCCccccCCceEEEEECCCC--eEEEEEecCCCC---Cc--eeEEEecCCCEEEEEc------c-EEE-----
Confidence 443211 00 0258999999873 322112111000 01 1278899999888763 1 233
Q ss_pred CCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCEEEEEE-ecCCCcceEEEEeCCCCc
Q 007620 388 FTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK-ESKTEITQYHILSWPLKK 463 (595)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~s~~~p~~l~~~d~~~~~ 463 (595)
.+|+++++......... ....+.. ..++++++.++++. .+......+++++.. ++
T Consensus 248 -----------~~d~~t~~~~~~~~~~~--~~~~p~g-------i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 248 -----------RMPVEADRVPVRPFLEF--RDTKYYG-------LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp -----------EEETTCSSCCSSCSBCC--CSSCEEE-------EEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred -----------EEECCCCceeeeeeecC--CCCceEE-------EEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 46776666421100000 0011222 24667666666653 222456789999986 44
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00058 Score=67.68 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=44.1
Q ss_pred eeEEEecCCCCCCCCceeeecC--C-CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-------ce-
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGY--P-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-------EA- 74 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~--~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-------~~- 74 (595)
.|.|.|+. .+....+..+ . ....+...+|||||+.||-.+. ++.-.|| ++..+ +.
T Consensus 35 ~i~lw~~~----~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--------D~~v~iw--~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 35 KIKLVSVK----YDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF--------DSTVSIW--AKEESADRTFEMDLL 100 (330)
T ss_dssp CEEEEECS----SSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET--------TSCEEEE--EC-------CCCEEE
T ss_pred EEEEEEec----CCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC--------CCcEEEE--EcccCcCccccceeE
Confidence 36677776 3332222212 1 2335788999999998776543 3344455 65322 11
Q ss_pred EecccCCCccccccccceEEecCCcEEEEE
Q 007620 75 KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+..... .+..+.|+|||+.|+..
T Consensus 101 ~~~~~h~~-----~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 101 AIIEGHEN-----EVKGVAWSNDGYYLATC 125 (330)
T ss_dssp EEEC---------CEEEEEECTTSCEEEEE
T ss_pred EEEcCCCC-----cEEEEEECCCCCEEEEE
Confidence 12221121 46789999999988775
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0012 Score=64.18 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=46.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccC--CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.|.|.|+.. ........+.++. ..+....|+|+ |+.||-.+. + ..|.++++.+++...+.....
T Consensus 32 ~v~iw~~~~-~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~~~- 97 (297)
T 2pm7_B 32 TIKIFEVEG-ETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSY--------D--GKVMIWKEENGRWSQIAVHAV- 97 (297)
T ss_dssp CEEEEEBCS-SCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEET--------T--TEEEEEEBSSSCBCCCEEECC-
T ss_pred EEEEEecCC-CCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcC--------C--CEEEEEEcCCCceEEEEEeec-
Confidence 467778861 0011223444322 25778899874 877665542 2 445566887764332221110
Q ss_pred cccccccceEEecC--CcEEEEE
Q 007620 84 CLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
....+..+.|+|+ |+.|+..
T Consensus 98 -h~~~v~~v~~~p~~~g~~l~s~ 119 (297)
T 2pm7_B 98 -HSASVNSVQWAPHEYGPMLLVA 119 (297)
T ss_dssp -CSSCEEEEEECCGGGCSEEEEE
T ss_pred -CCCceeEEEeCcCCCCcEEEEE
Confidence 0114678999998 7776664
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0016 Score=64.78 Aligned_cols=113 Identities=15% Similarity=0.206 Sum_probs=70.6
Q ss_pred CcccceEEccC---CCEEEEEEecccccccCCCceEEEEEECCC-Cce--EecccCCCccccccccceEEecCCcEEEEE
Q 007620 31 AKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 31 ~~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~--~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+...+|||| |+.||.... + ..|.++++.+ +.. ..+..... .+..+.|+||++.|+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSW--------A--NDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEET--------T--SEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECC--------C--CcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEE
Confidence 36889999999 577666542 2 4566667765 443 33332222 57789999999988765
Q ss_pred ecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeec-CCCCeeeeeEE
Q 007620 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTPAVYTAVEP 182 (595)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~l-t~~~~~~~~~~ 182 (595)
.. ...|.++++ +++...+ .....+..+.|
T Consensus 105 ~~-------------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 135 (368)
T 3mmy_A 105 SC-------------------------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHW 135 (368)
T ss_dssp ET-------------------------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred cC-------------------------------------------------CCcEEEEEcCCCCceeeccccCceEEEEE
Confidence 21 123445555 3333332 23334567888
Q ss_pred --CCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 183 --SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 183 --SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
+|+++.|+....+ ..+.+||+.+++
T Consensus 136 ~~~~~~~~l~~~~~d-------------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 136 IKAPNYSCVMTGSWD-------------KTLKFWDTRSSN 162 (368)
T ss_dssp EECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred EeCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence 9999888877542 368899987554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.011 Score=57.20 Aligned_cols=58 Identities=21% Similarity=0.461 Sum_probs=39.5
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...|||++ .||... + ..|.++|+.+|+..++...... ...+..+.|+|+|+.|+..
T Consensus 28 ~~~l~WS~~~-~lAvg~---------D--~tV~iWd~~tg~~~~~~~~~~~--~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL---------D--NSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CBCEEECTTS-EEEEEE---------T--TEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEE
T ss_pred ceEEEECCCC-EEEEEe---------C--CEEEEEECCCCCEEEEEEecCC--CCeEEEEEECCCCCEEEEE
Confidence 3567999997 666532 2 3577779999987665432211 1146789999999988765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0052 Score=63.67 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred eeEEEecCCCCCCCCc-eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +++. +.+.. ....+....|+|++ .|+. ... ...|.++++.+++.........
T Consensus 143 ~i~vwd~~----~~~~~~~~~~--h~~~V~~l~~~~~~-~l~s-~s~---------dg~i~vwd~~~~~~~~~~~~h~-- 203 (464)
T 3v7d_B 143 MIRVYDSI----NKKFLLQLSG--HDGGVWALKYAHGG-ILVS-GST---------DRTVRVWDIKKGCCTHVFEGHN-- 203 (464)
T ss_dssp CEEEEETT----TTEEEEEECC--CSSCEEEEEECSTT-EEEE-EET---------TSCEEEEETTTTEEEEEECCCS--
T ss_pred cEEEEECC----CCcEEEEEeC--CCcCEEEEEEcCCC-EEEE-EeC---------CCCEEEEECCCCcEEEEECCCC--
Confidence 47788887 4443 33442 23358899999999 4443 322 2456777998887554433221
Q ss_pred ccccccceEEe--cCCcEEEEEe
Q 007620 85 LNAVFGSFVWV--NNSTLLIFTI 105 (595)
Q Consensus 85 ~~~~~~~~~Ws--pdg~~l~~~~ 105 (595)
..+..+.|+ ++++.|+...
T Consensus 204 --~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 204 --STVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp --SCEEEEEEEESSSCEEEEEEE
T ss_pred --CccEEEEEecCCCCCEEEEEc
Confidence 146677887 5667666653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00036 Score=77.76 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=37.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC--CcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
.+....|||||++|+.... + ..|.++++.++....+...... ...+..+.|+|+ ++.|+..
T Consensus 11 ~V~~l~~s~dg~~latg~~--------d--g~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS--------D--KTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CEEEECCCSSSCCEEEEET--------T--TEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEE
T ss_pred eeEEEEECCCCCeEEEEEC--------C--CcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEE
Confidence 4788999999998876643 2 3455556654332222111110 125678999988 8877765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00098 Score=65.52 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=47.3
Q ss_pred eeEEEecCCCCCCCCc-eeeecC-CCCCcccceEEcc--CCCEEEEEEecccccccCCCceEEEEEECCCCc--------
Q 007620 6 GIGIHRLLPDDSLGPE-KEVHGY-PDGAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------- 73 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~lt~~-~~~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-------- 73 (595)
.|.|+|+.. .... +.+..+ .....+....|+| ||+.|+.... + ..|.++++.+++
T Consensus 34 ~i~iw~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~--------d--g~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 34 HIKVFKLDK---DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY--------D--KTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp EEEEEEECS---SSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET--------T--SCEEEEEECTTSCTTSSCSE
T ss_pred eEEEEECCC---CCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC--------C--CeEEEEecCCCcccccccCc
Confidence 477888872 2211 122111 1233588999999 6988776653 2 345555766653
Q ss_pred --eEecccCCCccccccccceEEecC--CcEEEEE
Q 007620 74 --AKPLFESPDICLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 74 --~~~lt~~~~~~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
...+.... ..+..+.|+|+ ++.|+..
T Consensus 101 ~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 101 NKLCTLNDSK-----GSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEEEECCCS-----SCEEEEEECCGGGCSEEEEE
T ss_pred ceeeeecccC-----CceeEEEEcCCCCCcEEEEe
Confidence 22222212 24678999999 8887775
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0035 Score=64.16 Aligned_cols=200 Identities=7% Similarity=-0.007 Sum_probs=113.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......|+|||+ |++ +.. ....|++++++++....+..... ... +.|+++++.|++....
T Consensus 132 ~P~~la~d~~g~-lyv-~d~--------~~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~---- 191 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLA-YQR--------DDPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWE---- 191 (409)
T ss_dssp CEEEEEECSTTE-EEE-EET--------TTTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSS----
T ss_pred CceEEEEeCCCC-EEE-Eec--------CCCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecC----
Confidence 355678999997 544 432 34689999999888776644322 223 8999999988775210
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC-C-Ceeec----C-CCCeeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G-TAKDF----G-TPAVYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~~~~l----t-~~~~~~~~~~Sp 184 (595)
+ ...|++++.. + ..+.+ . .......++++|
T Consensus 192 ------------------~-------------------------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p 228 (409)
T 3hrp_A 192 ------------------G-------------------------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE 228 (409)
T ss_dssp ------------------T-------------------------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT
T ss_pred ------------------C-------------------------CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC
Confidence 0 1146666663 2 22333 2 122345789999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCC-CceeecCCCeeEEEEEee
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQ 263 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~wspdg~~~l~~~~~~ 263 (595)
++..|++.. . ...|+++|.+++....+......... ...+. .+.++|++. .||+..
T Consensus 229 ~~g~lyv~d-~------------~~~I~~~d~~~~~~~~~~~~~~~g~~-------~~~P~~~ia~~p~~g-~lyv~d-- 285 (409)
T 3hrp_A 229 TEEWLYFVD-S------------NKNFGRFNVKTQEVTLIKQLELSGSL-------GTNPGPYLIYYFVDS-NFYMSD-- 285 (409)
T ss_dssp TSSEEEEEC-T------------TCEEEEEETTTCCEEEEEECCCCSCC-------CCSSCCEEEEETTTT-EEEEEE--
T ss_pred CCCeEEEEE-C------------CCcEEEEECCCCCEEEEecccccCCC-------CCCccccEEEeCCCC-EEEEEe--
Confidence 777787742 2 23799999987766555322110000 01123 678888654 366542
Q ss_pred cCCCcccccCCcceEEeccCCCCCCCCceeccccC---------------ccccceeecCCCcEEEEEEeecccceEEEE
Q 007620 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---------------LRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (595)
Q Consensus 264 d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~---------------~~~~~~~wspDg~~l~~~~~~~~~~~~L~~ 328 (595)
. ..+.++.++. ++ ....+.... .....+.+++||..++.+.+ ...+|.+
T Consensus 286 -~--------~~~~I~~~~~---~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~---~~~~I~~ 349 (409)
T 3hrp_A 286 -Q--------NLSSVYKITP---DG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF---KGYCLRK 349 (409)
T ss_dssp -T--------TTTEEEEECT---TC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT---TTCEEEE
T ss_pred -C--------CCCEEEEEec---CC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC---CCCEEEE
Confidence 1 2235666664 33 333222211 12345778999985554320 3458999
Q ss_pred EeCCC
Q 007620 329 VCPGS 333 (595)
Q Consensus 329 ~d~~~ 333 (595)
+++.+
T Consensus 350 ~~~~~ 354 (409)
T 3hrp_A 350 LDILD 354 (409)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99655
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0021 Score=63.86 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred eEEEecCCCCCCCC-ceeeecCCCCCcccceEEcc--CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 7 IGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 7 ~~~~~~~~~~~~g~-~~~lt~~~~~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+.+.++. .++ .+.+. ......+....|+| +|+.|+-.+. ...|.++|+.+++...+.....
T Consensus 106 ~~~~~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~~~~~~~~- 169 (343)
T 3lrv_A 106 ITILDSK----TNKVLREIE-VDSANEIIYMYGHNEVNTEYFIWADN----------RGTIGFQSYEDDSQYIVHSAKS- 169 (343)
T ss_dssp EEEEETT----TCCEEEEEE-CCCSSCEEEEECCC---CCEEEEEET----------TCCEEEEESSSSCEEEEECCCS-
T ss_pred eEEeecC----CcceeEEee-cCCCCCEEEEEcCCCCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCC-
Confidence 3445655 455 23333 23333588899999 9998776542 2457777998888755542222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
...+..+.|+|||+.|+.... ...|.++|
T Consensus 170 --~~~i~~~~~~pdg~~lasg~~-------------------------------------------------dg~i~iwd 198 (343)
T 3lrv_A 170 --DVEYSSGVLHKDSLLLALYSP-------------------------------------------------DGILDVYN 198 (343)
T ss_dssp --SCCCCEEEECTTSCEEEEECT-------------------------------------------------TSCEEEEE
T ss_pred --CCceEEEEECCCCCEEEEEcC-------------------------------------------------CCEEEEEE
Confidence 114678999999998776421 12355566
Q ss_pred C-CCC-e-eecCC--CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 164 L-DGT-A-KDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 164 ~-~g~-~-~~lt~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
+ +++ . ..+.. ...+..++|||||++|+.... . .+.+||+..++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-------------~-~v~iwd~~~~~ 246 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-------------Q-TVVCFDLRKDV 246 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-------------S-BEEEEETTSST
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-------------C-eEEEEEcCCCC
Confidence 6 443 2 34433 345678999999999988762 1 68899987543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0026 Score=62.95 Aligned_cols=192 Identities=11% Similarity=-0.024 Sum_probs=103.9
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcccc
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~ 118 (595)
.++.+|+.+.. ....|.++|+++++. .++.... ....+.+++|| .|++....
T Consensus 51 ~~~~~lyv~~~---------~~~~v~viD~~t~~~~~~i~~~~------~p~~i~~~~~g-~lyv~~~~----------- 103 (328)
T 3dsm_A 51 IRDGIGWIVVN---------NSHVIFAIDINTFKEVGRITGFT------SPRYIHFLSDE-KAYVTQIW----------- 103 (328)
T ss_dssp EETTEEEEEEG---------GGTEEEEEETTTCCEEEEEECCS------SEEEEEEEETT-EEEEEEBS-----------
T ss_pred EECCEEEEEEc---------CCCEEEEEECcccEEEEEcCCCC------CCcEEEEeCCC-eEEEEECC-----------
Confidence 35677655543 246799999998886 4453211 34577888998 45554100
Q ss_pred CCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ecCCCC------eeeeeEECCCCCeEE
Q 007620 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVL 190 (595)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~lt~~~------~~~~~~~SpDg~~l~ 190 (595)
...|+++|+ +++.. .+..+. ....+++ ++++|+
T Consensus 104 -------------------------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~ly 144 (328)
T 3dsm_A 104 -------------------------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVY 144 (328)
T ss_dssp -------------------------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEE
T ss_pred -------------------------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEE
Confidence 134666776 44432 232111 2234555 577777
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
++.... ...|.++|+.+++. +.+... ..+..+..++||+ +++. ........
T Consensus 145 v~~~~~-----------~~~v~viD~~t~~~~~~i~~g--------------~~p~~i~~~~dG~--l~v~-~~~~~~~~ 196 (328)
T 3dsm_A 145 VNCWSY-----------QNRILKIDTETDKVVDELTIG--------------IQPTSLVMDKYNK--MWTI-TDGGYEGS 196 (328)
T ss_dssp EEECTT-----------CCEEEEEETTTTEEEEEEECS--------------SCBCCCEECTTSE--EEEE-BCCBCTTC
T ss_pred EEcCCC-----------CCEEEEEECCCCeEEEEEEcC--------------CCccceEEcCCCC--EEEE-ECCCccCC
Confidence 764211 24799999987654 333211 1123567788876 5544 21110000
Q ss_pred cccCCcceEEeccCCCCCCCCceecccc--CccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
........++++|. ..++....... ......+.++||+..++... . .++++|++++
T Consensus 197 ~~~~~~~~v~~id~---~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~----~--~v~~~d~~t~ 254 (328)
T 3dsm_A 197 PYGYEAPSLYRIDA---ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN----N--DIWRMPVEAD 254 (328)
T ss_dssp SSCBCCCEEEEEET---TTTEEEEEEECCTTCCCEEEEECTTSCEEEEES----S--SEEEEETTCS
T ss_pred ccccCCceEEEEEC---CCCeEEEEEecCCCCCceeEEEecCCCEEEEEc----c--EEEEEECCCC
Confidence 00001246788885 33344322222 22456789999988765542 1 6899999874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0026 Score=63.65 Aligned_cols=71 Identities=8% Similarity=0.020 Sum_probs=41.7
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcce-EEeccCCCCCCCCceecc-c-cCccccceeecCCCcEEEEEEeec
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI-IYTQPAEPAEGEKPEILH-K-LDLRFRSVSWCDDSLALVNETWYK 320 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~-~~~~d~~~~~g~~~~~l~-~-~~~~~~~~~wspDg~~l~~~~~~~ 320 (595)
...+.|+|||+. |+-. ..... +.+||+ .++.....+. . ....+..+.|+|||..|+... .
T Consensus 198 v~~~~~s~~g~~-l~s~------------s~d~~~v~iwd~--~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s--~ 260 (355)
T 3vu4_A 198 IKMVRLNRKSDM-VATC------------SQDGTIIRVFKT--EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS--D 260 (355)
T ss_dssp EEEEEECTTSSE-EEEE------------ETTCSEEEEEET--TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE--T
T ss_pred eEEEEECCCCCE-EEEE------------eCCCCEEEEEEC--CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE--C
Confidence 346889999973 3222 11234 777786 2332223343 1 345677899999999887754 2
Q ss_pred ccceEEEEEeCCC
Q 007620 321 TSQTRTWLVCPGS 333 (595)
Q Consensus 321 ~~~~~L~~~d~~~ 333 (595)
++ .|.++|+..
T Consensus 261 d~--~v~iw~~~~ 271 (355)
T 3vu4_A 261 KW--TLHVFEIFN 271 (355)
T ss_dssp TC--EEEEEESSC
T ss_pred CC--EEEEEEccC
Confidence 23 455556654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0008 Score=66.97 Aligned_cols=166 Identities=10% Similarity=0.073 Sum_probs=91.6
Q ss_pred eEEEEcC-CCC-eeecC--CCCeeeeeEECC--CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCc
Q 007620 158 QLVLGSL-DGT-AKDFG--TPAVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (595)
Q Consensus 158 ~l~~~d~-~g~-~~~lt--~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~ 231 (595)
.+.++++ .++ .+.+. ....+..++|+| +|++|+....+ ..+.+||+.+++...+......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~~~~~- 170 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-------------GTIGFQSYEDDSQYIVHSAKSD- 170 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT-------------CCEEEEESSSSCEEEEECCCSS-
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEEecCCC-
Confidence 4555565 444 33332 223456889999 99988877542 3688999987766443322110
Q ss_pred cCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce--eccc-cCccccceeecC
Q 007620 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--ILHK-LDLRFRSVSWCD 308 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~--~l~~-~~~~~~~~~wsp 308 (595)
.....+.|+|||.. |+.. .....+.++|. ..++.. .+.. ....+..+.|+|
T Consensus 171 ----------~~i~~~~~~pdg~~-lasg------------~~dg~i~iwd~---~~~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 171 ----------VEYSSGVLHKDSLL-LALY------------SPDGILDVYNL---SSPDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp ----------CCCCEEEECTTSCE-EEEE------------CTTSCEEEEES---SCTTSCCEECCCCTTSCEEEEEECT
T ss_pred ----------CceEEEEECCCCCE-EEEE------------cCCCEEEEEEC---CCCCCCccEEeccCCCCEEEEEEeC
Confidence 11346789999873 2221 12346777786 333332 3433 355678899999
Q ss_pred CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 309 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 309 Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
||..|+... + + .|.++|+.+.. ....+....... ... +...+.|+++|++++...
T Consensus 225 ~g~~l~s~~--~-~--~v~iwd~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 225 NGYWMVVEC--D-Q--TVVCFDLRKDV-GTLAYPTYTIPE-FKT-GTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp TSSEEEEEE--S-S--BEEEEETTSST-TCBSSCCCBC-------CCEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEe--C-C--eEEEEEcCCCC-cceeeccccccc-ccc-cceEEEECCCCCEEEEec
Confidence 999877764 2 2 57777887642 112111100000 000 001278999999887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00061 Score=68.50 Aligned_cols=92 Identities=13% Similarity=-0.074 Sum_probs=51.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC- 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~- 84 (595)
.+++.|+. +++...- ++-+... .+.+||||++|+......+.....+....|.++|+.+++...-.......
T Consensus 47 ~vsvID~~----t~~v~~~--i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAG----CGVTLGH--SLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETT----TTEEEEE--EEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECC----CCeEEEE--EeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 56666766 4544322 2233334 79999999987665421000000012477999999998753322111000
Q ss_pred --ccccccceEEecCCcEEEEE
Q 007620 85 --LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 --~~~~~~~~~Wspdg~~l~~~ 104 (595)
.......+.+||||++|++.
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEE
Confidence 00123478999999998886
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0042 Score=59.25 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=101.8
Q ss_pred eEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
..|++++++++..+.+....... .......+.|++++..|+++-.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~---------------------------------- 55 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI---------------------------------- 55 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET----------------------------------
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC----------------------------------
Confidence 47999999876543221000000 0012347889998888888621
Q ss_pred cccCcCCccceEEeecceEEEEcCCC-CeeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
....|++++++| ..+.+... .....++++|++..|+++... ...|.+++++
T Consensus 56 --------------~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~------------~~~I~~~~~~ 109 (267)
T 1npe_A 56 --------------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------LDRIEVAKMD 109 (267)
T ss_dssp --------------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT------------TTEEEEEETT
T ss_pred --------------CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC------------CCEEEEEEcC
Confidence 023567777755 33333222 234578899998888887542 2378888988
Q ss_pred CceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc
Q 007620 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (595)
Q Consensus 218 g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~ 297 (595)
+...+.+..... ..+..+...|++. .||+.... .....+++++. +|...+.+...
T Consensus 110 g~~~~~~~~~~~------------~~P~~i~vd~~~g-~lyv~~~~---------~~~~~I~~~~~---dg~~~~~~~~~ 164 (267)
T 1npe_A 110 GTQRRVLFDTGL------------VNPRGIVTDPVRG-NLYWTDWN---------RDNPKIETSHM---DGTNRRILAQD 164 (267)
T ss_dssp SCSCEEEECSSC------------SSEEEEEEETTTT-EEEEEECC---------SSSCEEEEEET---TSCCCEEEECT
T ss_pred CCCEEEEEECCC------------CCccEEEEeeCCC-EEEEEECC---------CCCcEEEEEec---CCCCcEEEEEC
Confidence 765444432110 1123567777654 37665211 01235665564 44333333322
Q ss_pred C-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 298 D-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 298 ~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
. .....+.+++++..|+.... ....|+++|+++
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~---~~~~I~~~~~~g 198 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQ 198 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTE
T ss_pred CCCCCcEEEEcCCCCEEEEEEC---CCCEEEEEecCC
Confidence 2 23456788998776554432 334899999987
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.015 Score=55.02 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=101.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......++|||+ |++++.. ....|++++..++....+..... .....+.++++|+ |++...
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~--------~~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~~~~g~-l~v~~~----- 85 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEG--------MYGRVVKLATGSTGTTVLPFNGL----YQPQGLAVDGAGT-VYVTDF----- 85 (270)
T ss_dssp CEEEEEECTTCC-EEEEECS--------SSCEEEEECC-----EECCCCSC----CSCCCEEECTTCC-EEEEET-----
T ss_pred CccceEECCCCC-EEEEccC--------CCCcEEEecCCCcccceEeeCCc----CCcceeEECCCCC-EEEEcC-----
Confidence 456778999997 5442421 34678888887665444321110 1245788889888 444310
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCC--CeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~--~~~~~~~~SpDg~~ 188 (595)
...|++++.++ ....+... .....+.++|+|+
T Consensus 86 --------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~- 120 (270)
T 1rwi_B 86 --------------------------------------------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA- 120 (270)
T ss_dssp --------------------------------------------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-
T ss_pred --------------------------------------------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-
Confidence 12455666654 33333222 2345788999987
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
|+++... ...|++++..+........... ..+..+.+.++|+ |++...
T Consensus 121 l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~~~~g~--l~v~~~------ 168 (270)
T 1rwi_B 121 VYVADRG------------NNRVVKLAAGSKTQTVLPFTGL------------NDPDGVAVDNSGN--VYVTDT------ 168 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTCCSCEECCCCSC------------CSCCCEEECTTCC--EEEEEG------
T ss_pred EEEEECC------------CCEEEEEECCCceeEeeccccC------------CCceeEEEeCCCC--EEEEEC------
Confidence 5555432 2367778755443322211000 1134577788876 554421
Q ss_pred ccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
....+++++. .++......... .....+.++++|..++... ....|+++++++
T Consensus 169 -----~~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~ 222 (270)
T 1rwi_B 169 -----DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGS 222 (270)
T ss_dssp -----GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTC
T ss_pred -----CCCEEEEEec---CCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCC
Confidence 1235666675 433322222111 3345678889986555542 223688999877
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0016 Score=66.23 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=22.8
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 220 (595)
.....++|+|++..++++...+ ..+.+||+.++.
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~d------------~~v~~wd~~t~~ 220 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGERN------------GNIRIFDWTLNL 220 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEETT------------SEEEEEETTCCC
T ss_pred CCcEEEEECCCCCceEEecCCC------------CEEEEEECCCCc
Confidence 3456789999987655554332 368889987553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0042 Score=59.21 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=89.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....+.|+|+++.|+++-. ....|++++++++....+..... .....+.+++++..|+++-.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~~~~~~~~~----~~p~~ia~d~~~~~lyv~d~----- 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI---------SEPSIGRASLHGGEPTTIIRQDL----GSPEGIALDHLGRTIFWTDS----- 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEET---------TTTEEEEEESSSCCCEEEECTTC----CCEEEEEEETTTTEEEEEET-----
T ss_pred cEEEEEEecCCCEEEEEEC---------CCCEEEEEecCCCCcEEEEECCC----CCccEEEEEecCCeEEEEEC-----
Confidence 4568899999988877642 35789999998776554432110 02457888998888887621
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCC-C-CeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGT-P-AVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~-~-~~~~~~~~SpDg~~ 188 (595)
....|++++++|+ .+.+.. . .....++++|++.+
T Consensus 99 -------------------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 99 -------------------------------------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp -------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE
T ss_pred -------------------------------------------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCE
Confidence 0235666777663 333322 2 23457899999888
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
|+++..... ...|+++++++...+.+..... ..+..+.+++++. .||+.
T Consensus 136 lyv~~~~~~----------~~~I~~~~~dg~~~~~~~~~~~------------~~P~gia~d~~~~-~lyv~ 184 (267)
T 1npe_A 136 LYWTDWNRD----------NPKIETSHMDGTNRRILAQDNL------------GLPNGLTFDAFSS-QLCWV 184 (267)
T ss_dssp EEEEECCSS----------SCEEEEEETTSCCCEEEECTTC------------SCEEEEEEETTTT-EEEEE
T ss_pred EEEEECCCC----------CcEEEEEecCCCCcEEEEECCC------------CCCcEEEEcCCCC-EEEEE
Confidence 888753211 2368888888765555432211 1123578888876 37665
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0017 Score=66.78 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=39.1
Q ss_pred CcccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCC---CceE--ecc-cCCCccccccccceEEecCCcEEEE
Q 007620 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET---GEAK--PLF-ESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 31 ~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~---g~~~--~lt-~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
..+...+||| ||+.||..+. + ..|.++++.+ +... .++ ... ..+..+.|+|+++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~--------d--g~v~vwd~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSD--------Q--GVIKIWNLKEIIVGEVYSSSLTYDCS-----STVTQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEET--------T--SEEEEEEHHHHHTTCCCSCSEEEECS-----SCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecC--------C--ceEEEeECcccccCcccceeeeccCC-----CCEEEEEEeCCCCEEEE
Confidence 3688999999 9998876653 2 4555667655 3311 111 112 25778999999998877
Q ss_pred Ee
Q 007620 104 TI 105 (595)
Q Consensus 104 ~~ 105 (595)
..
T Consensus 129 ~s 130 (437)
T 3gre_A 129 SS 130 (437)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.002 Score=64.55 Aligned_cols=68 Identities=7% Similarity=-0.063 Sum_probs=40.1
Q ss_pred eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee-c-ccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 293 ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD-R-VFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
.+......+..+.|+|||..|+.... ++. .+.++|+.++ +....+. . ... .+ ..+.|+|||+.|+..
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~--d~~-~v~iwd~~~~--~~~~~~~~g~h~~-~v-----~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQ--DGT-IIRVFKTEDG--VLVREFRRGLDRA-DV-----VDMKWSTDGSKLAVV 258 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEET--TCS-EEEEEETTTC--CEEEEEECTTCCS-CE-----EEEEECTTSCEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeC--CCC-EEEEEECCCC--cEEEEEEcCCCCC-cE-----EEEEECCCCCEEEEE
Confidence 34444556788999999998877642 232 1556687763 2222222 1 111 01 127899999987766
Q ss_pred e
Q 007620 371 I 371 (595)
Q Consensus 371 ~ 371 (595)
.
T Consensus 259 s 259 (355)
T 3vu4_A 259 S 259 (355)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0056 Score=59.53 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC-CcE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STL 100 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-g~~ 100 (595)
....+.|+|||+ |++++......+ .....|+++++++++.+.+...........+..+.+++| |++
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~~~~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEVEVNG--KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETT--EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred CccCceECCCCC-EEEEEeccccCC--CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcE
Confidence 467899999995 555510000000 123579999988888766643100000113457788888 653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0051 Score=62.91 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=45.1
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~ 85 (595)
|...|+. ++....+... ..... +.|+|+|+.|++... .+...||+++..++.. +.+.......
T Consensus 154 I~~id~~----~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~--------~~~~~I~~~d~~~~~~~~~~g~~~~~~- 217 (409)
T 3hrp_A 154 VRLISVD----DNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGW--------EGTHTVYVYMKASGWAPTRIGQLGSTF- 217 (409)
T ss_dssp EEEEETT----TTEEEEEEET--CCBCB-CEECTTSSEEEEEBS--------STTCEEEEEEGGGTTCEEEEEECCTTS-
T ss_pred EEEEECC----CCEEEEeecc--CCCCc-eeEecCCCcEEEEec--------CCCceEEEEEcCCCceeEEeeeccchh-
Confidence 4444554 4555554432 22234 999999997766542 2233899999887653 3331100000
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.++|++..|++.
T Consensus 218 ~~~p~~iav~p~~g~lyv~ 236 (409)
T 3hrp_A 218 SGKIGAVALDETEEWLYFV 236 (409)
T ss_dssp CSCCCBCEECTTSSEEEEE
T ss_pred cCCcEEEEEeCCCCeEEEE
Confidence 0134578899966666664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.013 Score=59.30 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=108.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|+..++. ++....+. ........+.|+|.+++|+|+-. ....|++++++++..+.+......
T Consensus 97 ~I~~i~~~----~~~~~~~~--~~~~~~~gl~~d~~~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~-- 159 (386)
T 3v65_B 97 DIRQVLPH----RSEYTLLL--NNLENAIALDFHHRRELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLE-- 159 (386)
T ss_dssp CEEEECTT----SCCCEEEE--CSCSCEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCCEEEEECSSCS--
T ss_pred cceeeccC----CCcEEEEe--cCCCccEEEEEecCCCeEEEEeC---------CCCcEEEEecCCCCcEEEEeCCCC--
Confidence 34444554 44444443 22234678899998888877632 346899999988776555322110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
....++..+.+..|+++-. ....|++++++
T Consensus 160 --~p~glavd~~~g~lY~~d~------------------------------------------------~~~~I~~~~~d 189 (386)
T 3v65_B 160 --SPGGLAVDWVHDKLYWTDS------------------------------------------------GTSRIEVANLD 189 (386)
T ss_dssp --CCCCEEEETTTTEEEEEET------------------------------------------------TTTEEEECBTT
T ss_pred --CccEEEEEeCCCeEEEEcC------------------------------------------------CCCeEEEEeCC
Confidence 2346778877777887621 02356667776
Q ss_pred CC-eeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 166 GT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 166 g~-~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
|. .+.+... .....+++.|++.+|+++.... ...|++++.+|...+.+..... .
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~~------------~ 246 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-----------TPRIEASSMDGSGRRIIADTHL------------F 246 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------S
T ss_pred CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-----------CCEEEEEeCCCCCcEEEEECCC------------C
Confidence 63 2333222 2345788999999998885422 1479999998876655532211 0
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l 294 (595)
.+..+.++|++. .||+... ..+.|+.++. +|...+.+
T Consensus 247 ~PnGlavd~~~~-~lY~aD~-----------~~~~I~~~d~---dG~~~~~~ 283 (386)
T 3v65_B 247 WPNGLTIDYAGR-RMYWVDA-----------KHHVIERANL---DGSHRKAV 283 (386)
T ss_dssp CEEEEEEEGGGT-EEEEEET-----------TTTEEEEECT---TSCSCEEE
T ss_pred CeeeEEEeCCCC-EEEEEEC-----------CCCEEEEEeC---CCCeeEEE
Confidence 123577887765 4877631 2245676675 55344433
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0012 Score=73.52 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=49.0
Q ss_pred eeEEEecCCCCCCCCceeeecCC-CCCcccceEEccC--CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
.|.|+|+. ++....+..+. ....+....|||+ |+.|+..+. + ..|.++++.+++...+.....
T Consensus 32 ~I~vwd~~----~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~--------D--g~I~vwd~~~~~~~~~~~~~~ 97 (753)
T 3jro_A 32 TIKIFEVE----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--------D--GKVLIWKEENGRWSQIAVHAV 97 (753)
T ss_dssp EEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET--------T--SCEEEEEEETTEEEEEEEECC
T ss_pred cEEEEecC----CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC--------C--CeEEEEECCCCcccccccccC
Confidence 46777876 33333332222 2235888999998 888777653 2 445666777775322221111
Q ss_pred ccccccccceEEecC--CcEEEEE
Q 007620 83 ICLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 83 ~~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
....+..+.|+|+ ++.|+..
T Consensus 98 --h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 98 --HSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp --CSSCEEEEEECCGGGCSEEEEE
T ss_pred --CCCCeEEEEECCCCCCCEEEEE
Confidence 0125678999999 8877775
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0036 Score=62.83 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=26.0
Q ss_pred EEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 63 RVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 63 ~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.|.++|+++++...-..... .. .+..||||+.|++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~-----~P-~i~~spDg~~lyVa 82 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF-----LS-LAVAGHSGSDFALA 82 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT-----TC-EEEECTTSSCEEEE
T ss_pred eEEEEECCCCeEEEEEeCCC-----CC-ceEECCCCCEEEEE
Confidence 89999999987543322222 22 68999999998886
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0018 Score=63.67 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=45.2
Q ss_pred eeEEEecCCCCCCCCce---eeecCCCCCcccceEEcc--CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 6 GIGIHRLLPDDSLGPEK---EVHGYPDGAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~---~lt~~~~~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
.|.|.|+. ++... .+.++. ..+....|+| +|+.||-.+. + ..|.++|+.+++...+...
T Consensus 36 ~v~lwd~~----~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 36 SVKIFDVR----NGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSY--------D--RKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp EEEEEEEE----TTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEET--------T--SCEEEECCSSSCCCEEEEE
T ss_pred eEEEEEec----CCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEEC--------C--CEEEEEECCCCcceEEEEc
Confidence 36777886 44332 333222 2578899987 4887765442 2 3455558877642222111
Q ss_pred CCccccccccceEEecC--CcEEEEE
Q 007620 81 PDICLNAVFGSFVWVNN--STLLIFT 104 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspd--g~~l~~~ 104 (595)
.. ....+..+.|+|+ |..|+..
T Consensus 100 ~~--h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 100 AG--HDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp CC--CSSCCCEEEECCTTTCSCEEEE
T ss_pred cC--CCCceEEEEECCCCCCcEEEEE
Confidence 10 0114678999998 6666654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.044 Score=56.53 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=31.7
Q ss_pred ceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 276 DIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 276 ~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
..+.++|+ ..++.. .+......+..+.|+|++..++... .++ .|.++|+.+
T Consensus 290 ~~i~vwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~dg--~i~vwd~~~ 341 (464)
T 3v7d_B 290 NTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISAS--MDT--TIRIWDLEN 341 (464)
T ss_dssp SCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEE--TTS--CEEEEETTT
T ss_pred CeEEEEEC---CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCC--cEEEEECCC
Confidence 35677776 322322 2333445677889999999877654 223 577778876
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.017 Score=58.74 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=40.3
Q ss_pred cccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeeccccccc---------CCCCC-CCeeeCCCCCEEEE
Q 007620 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY---------SDPGS-PMMTRTSTGTNVIA 369 (595)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~---------~~~~~-~~~~~~~dg~~l~~ 369 (595)
....+..|+||+.|+...+. ...|.++|+... ..++.+-.-.+...+ ..++. ..+..++||++||+
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg---~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWG---IGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp CCCCEEECTTSCEEEEEETT---TTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred ceeEEEECCCCCEEEEEeCC---CCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 45678899999987665432 347888887532 345555221121110 00111 34899999999988
Q ss_pred Ee
Q 007620 370 KI 371 (595)
Q Consensus 370 ~~ 371 (595)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 75
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0016 Score=68.53 Aligned_cols=180 Identities=12% Similarity=0.027 Sum_probs=95.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEE-c-cCCCEEEEEEecc----cccc-----cCCCceEEEEEECCCCce
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSW-S-PDGKRIAFSVRVD----EEDN-----VSSCKLRVWIADAETGEA 74 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~-S-PDG~~laf~~~~~----~~~~-----~~~~~~~L~v~d~~~g~~ 74 (595)
.|..-||. +.+..++..++.+......++ + |||++| |+..+. .+++ .......+-++|.++.+.
T Consensus 113 rVavIdl~----t~~~~~ii~ip~g~~phg~~~~~~p~~~~v-~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v 187 (595)
T 1fwx_A 113 RVARVRCD----VMKCDAILEIPNAKGIHGLRPQKWPRSNYV-FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 187 (595)
T ss_dssp EEEEEETT----TTEEEEEEECSSCCSEEEEEECCSSBCSEE-EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE
T ss_pred EEEEEECC----CceEeeEEeCCCCCCCcceeeeecCCCcEE-EEecccccccCCCCcccccccccCceEEEEECCCCeE
Confidence 46666776 667666666776656777777 6 999998 555321 0000 013356788999998763
Q ss_pred -EecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEE
Q 007620 75 -KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (595)
Q Consensus 75 -~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (595)
.+|-- .. ....+..+|||++++.+............ ..........-... +......+ ++.. .+
T Consensus 188 ~~qI~V-gg-----~pd~~~~spdGk~~~vt~~~se~~~~i~~--~~~~~~d~v~V~~~---~~~~~~v~---~Gk~-~~ 252 (595)
T 1fwx_A 188 AWQVLV-SG-----NLDNCDADYEGKWAFSTSYNSEKGMTLPE--MTAAEMDHIVVFNI---AEIEKAIA---AGDY-QE 252 (595)
T ss_dssp EEEEEE-SS-----CCCCEEECSSSSEEEEEESCTTCCSSHHH--HTCCSEEEEEEEEH---HHHHHHHH---HTCS-EE
T ss_pred EEEEEe-CC-----CccceEECCCCCEEEEEecCcccCcchhh--ccccccceEEEeec---cceeEecc---CCCe-eE
Confidence 33311 11 23567899999998887544222110000 00000000000000 00000000 1111 11
Q ss_pred eecceEEEEcC-C--CC--eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 154 YTTAQLVLGSL-D--GT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 154 ~~~~~l~~~d~-~--g~--~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
...+.++|. + +. ...|..+.....+.+||||++++++... ...+.++|+++.
T Consensus 253 --i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~ 309 (595)
T 1fwx_A 253 --LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRF 309 (595)
T ss_dssp --ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGH
T ss_pred --ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECccc
Confidence 255888888 4 32 2344433344578999999999888543 237888888743
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0048 Score=60.91 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=61.2
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-Cce----EEEeccCCCCccCCccccccccCCCCceee
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKL----VRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (595)
.+..++|||||++|+..+.+ ..+.+||+. ++. ...+... ......+.|+
T Consensus 109 ~V~~v~~sp~g~~las~s~D-------------~~v~iwd~~~~~~~~~~~~~~~~h-------------~~~v~~v~~~ 162 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRD-------------KSVWIWETDESGEEYECISVLQEH-------------SQDVKHVIWH 162 (330)
T ss_dssp CEEEEEECTTSCEEEEEETT-------------SCEEEEECCTTCCCCEEEEEECCC-------------SSCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCC-------------CEEEEEeccCCCCCeEEEEEeccC-------------CCceEEEEEC
Confidence 45688999999998877642 368889884 321 1222211 1113467899
Q ss_pred cCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce---eccccCccccceeecCC--CcEEEEEEeecccceE
Q 007620 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDD--SLALVNETWYKTSQTR 325 (595)
Q Consensus 251 pdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~---~l~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~ 325 (595)
|++.. |+.. . ....+.+|+. ..+..+ .+......+..+.|+|+ +..++... .++..+
T Consensus 163 p~~~~-l~s~--s----------~D~~i~iW~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~ 224 (330)
T 2hes_X 163 PSEAL-LASS--S----------YDDTVRIWKD---YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVR 224 (330)
T ss_dssp SSSSE-EEEE--E----------TTSCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEE
T ss_pred CCCCE-EEEE--c----------CCCeEEEEEC---CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEE
Confidence 99873 3221 1 1234555554 222211 23333445677889998 45565543 335556
Q ss_pred EEEEe
Q 007620 326 TWLVC 330 (595)
Q Consensus 326 L~~~d 330 (595)
||-+.
T Consensus 225 iw~~~ 229 (330)
T 2hes_X 225 VWKYM 229 (330)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.031 Score=55.60 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=90.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....+.|+|.+++|+|+-. ....|++++++++..+.+...... ....++..+.+..|+++-.
T Consensus 74 ~~~~l~~d~~~~~ly~~D~---------~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~g~ly~~d~----- 135 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDV---------TLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVHDKLYWTDS----- 135 (349)
T ss_dssp CEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCSCEEEECSSCS----CCCEEEEETTTTEEEEEET-----
T ss_pred ceEEEEEeccccEEEEEec---------cCCceEEEecCCCCceEEEeCCCC----CccEEEEecCCCeEEEEcC-----
Confidence 4667889998888877632 346899999988775555322110 2346777777777777611
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCC--CeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~--~~~~~~~~SpDg~~ 188 (595)
....|++++++|. .+.+... .....+++.|++..
T Consensus 136 -------------------------------------------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 136 -------------------------------------------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp -------------------------------------------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred -------------------------------------------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 1235777777774 2333222 23457899999889
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
|+++.... ...|++++++|...+.+..... ..+..+.+.+++. .||+.
T Consensus 173 ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~~------------~~PnGla~d~~~~-~lY~a 220 (349)
T 3v64_C 173 IYWTDWGN-----------TPRIEASSMDGSGRRIIADTHL------------FWPNGLTIDYAGR-RMYWV 220 (349)
T ss_dssp EEEEECSS-----------SCEEEEEETTSCSCEESCCSSC------------SCEEEEEEETTTT-EEEEE
T ss_pred EEEeccCC-----------CCEEEEEeCCCCCcEEEEECCC------------CCcceEEEeCCCC-EEEEE
Confidence 98885432 1479999998876666532211 1123577887765 48776
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.63 E-value=0.01 Score=57.58 Aligned_cols=238 Identities=10% Similarity=0.093 Sum_probs=121.1
Q ss_pred eeEEEecCCCCCCCCceeeecCC----CCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEec-ccC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FES 80 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~----~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l-t~~ 80 (595)
.|+..|+. +|+.+.+.. + .........++||+..|.+... ...|++++.+ |+.+.+ ...
T Consensus 47 ~i~~~d~~----~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~----------~~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 47 EILRIDLK----TGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM----------RLGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp EEEEECTT----TCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET----------TTEEEEEETT-SCEEECCSBC
T ss_pred EEEEEeCC----CCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC----------CCCEEEEeCC-CCEEEEEecc
Confidence 46666665 677666542 1 1124667889999334544432 2379999998 877666 432
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEE
Q 007620 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (595)
Q Consensus 81 ~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (595)
........+..+.++++|+..+.......... .+. .. ... ....|+
T Consensus 111 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~------------------------~~~---~~-~~~------~~~~l~ 156 (314)
T 1pjx_A 111 SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA------------------------DYT---RS-MQE------KFGSIY 156 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCEEEEECBCBCTTS------------------------CCC---BT-TSS------SCEEEE
T ss_pred CCCccccCCcCEEECCCCCEEEEecCcccccc------------------------ccc---cc-ccC------CCCeEE
Confidence 21100112457889999974333211100000 000 00 000 135688
Q ss_pred EEcCCCCeeecCCC-CeeeeeEEC----CCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceE---EEeccCCCCc
Q 007620 161 LGSLDGTAKDFGTP-AVYTAVEPS----PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV---RELCDLPPAE 231 (595)
Q Consensus 161 ~~d~~g~~~~lt~~-~~~~~~~~S----pDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~---~~l~~~~~~~ 231 (595)
+++.+++.+.+... .....++|+ |||+.|+++... ...|++++.+ .+.. +.+...+...
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 157 CFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECCCCCccccceEEEECCCCC
Confidence 88877655544221 223467899 999988877532 2368888865 3432 1222221100
Q ss_pred cCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCC
Q 007620 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDS 310 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg 310 (595)
. .....+.+.++|. |+.... ..+.+++++. +.++.. .+.........+.+++||
T Consensus 225 ~---------~~p~~i~~d~~G~--l~v~~~-----------~~~~i~~~d~---~~g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 225 E---------GGADGMDFDEDNN--LLVANW-----------GSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp S---------CEEEEEEEBTTCC--EEEEEE-----------TTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTS
T ss_pred C---------CCCCceEECCCCC--EEEEEc-----------CCCEEEEEcC---CCCcEeEEEeCCCCCceeEEECCCC
Confidence 0 0122466777775 443311 1235666674 312332 222222345677889999
Q ss_pred cEEEEEEeecccceEEEEEeCCC
Q 007620 311 LALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 311 ~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
..|+.... ....|++++++.
T Consensus 280 ~~l~v~~~---~~~~l~~~~~~~ 299 (314)
T 1pjx_A 280 KTIFVTEH---ENNAVWKFEWQR 299 (314)
T ss_dssp SEEEEEET---TTTEEEEEECSS
T ss_pred CEEEEEeC---CCCeEEEEeCCC
Confidence 85444321 123788888765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.05 Score=53.23 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=106.1
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCC----CceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~----g~~~~lt~~~ 81 (595)
.|...||. +++...+- +.......+.|++++++|+|+-. ....|+++++++ .....+....
T Consensus 11 ~I~~i~~~----~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~---------~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLD----RSEYTSLI--PNLRNVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETT----SCCCEEEE--CSCSSEEEEEEETTTTEEEEEET---------TTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECC----CcceEehh--cCCCceEEEEEEeCCCEEEEEEC---------CCCcEEEEECCCCCCCcccEEEEeCC
Confidence 46666776 45444443 23335778999999988877642 347899999886 2333332111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
- .....+++.+.+..|+++-. ....|.+
T Consensus 76 ~----~~p~glavd~~~~~ly~~d~------------------------------------------------~~~~I~~ 103 (316)
T 1ijq_A 76 I----QAPDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSV 103 (316)
T ss_dssp C----SCCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEE
T ss_pred C----CCcCEEEEeecCCeEEEEEC------------------------------------------------CCCEEEE
Confidence 0 02346777777777777511 1235667
Q ss_pred EcCCCC-eeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccc
Q 007620 162 GSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (595)
Q Consensus 162 ~d~~g~-~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~ 238 (595)
++++|. .+.+... .....+++.|++.+|+++.... ...|++++++|...+.+.....
T Consensus 104 ~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----------~~~I~~~~~dG~~~~~~~~~~~--------- 163 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI--------- 163 (316)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSC---------
T ss_pred EeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----------CCeEEEEcCCCCCeEEEEECCC---------
Confidence 777663 3333221 2345788999888888875321 1378999998876665532211
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~ 295 (595)
..+..+.+.+++. .||+... ..+.++.++. +|...+.+.
T Consensus 164 ---~~P~gla~d~~~~-~lY~~D~-----------~~~~I~~~d~---dg~~~~~~~ 202 (316)
T 1ijq_A 164 ---QWPNGITLDLLSG-RLYWVDS-----------KLHSISSIDV---NGGNRKTIL 202 (316)
T ss_dssp ---SCEEEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCSCEEEE
T ss_pred ---CCceEEEEeccCC-EEEEEEC-----------CCCeEEEEec---CCCceEEEe
Confidence 1123578888776 4877631 1345666675 554444443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.076 Score=53.60 Aligned_cols=168 Identities=12% Similarity=0.072 Sum_probs=96.5
Q ss_pred ecceEEEEcCCC-CeeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCcc
Q 007620 155 TTAQLVLGSLDG-TAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (595)
Q Consensus 155 ~~~~l~~~d~~g-~~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~ 232 (595)
....|.++++++ +...+.. ......++|.+.+..|+++... ...|++++++++..+.+.....
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~--- 158 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL--- 158 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSSC---
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCCC---
Confidence 456788999965 5554433 2345688999988899888543 2379999998876555432211
Q ss_pred CCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCc
Q 007620 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSL 311 (595)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~ 311 (595)
..+..+...+.+. .||+... ....+.+++. +|...+.+.... .....+++.|++.
T Consensus 159 ---------~~p~glavd~~~g-~lY~~d~-----------~~~~I~~~~~---dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 159 ---------ESPGGLAVDWVHD-KLYWTDS-----------GTSRIEVANL---DGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp ---------SCCCCEEEETTTT-EEEEEET-----------TTTEEEECBT---TSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred ---------CCccEEEEEeCCC-eEEEEcC-----------CCCeEEEEeC---CCCceEEeecCCCCCCcEEEEEcCCC
Confidence 1123455554443 4777521 1235666665 543434443322 2345567777665
Q ss_pred EEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 312 ~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.|++..+.. ..+|+++++++. ..+.+...... .|. .+.++++++.||+..
T Consensus 215 ~ly~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~----~Pn--Glavd~~~~~lY~aD 264 (386)
T 3v65_B 215 TIYWTDWGN--TPRIEASSMDGS--GRRIIADTHLF----WPN--GLTIDYAGRRMYWVD 264 (386)
T ss_dssp EEEEEECSS--SCEEEEEETTSC--SCEEEECSSCS----CEE--EEEEEGGGTEEEEEE
T ss_pred eEEEeccCC--CCEEEEEeCCCC--CcEEEEECCCC----Cee--eEEEeCCCCEEEEEE
Confidence 555443321 258999999883 44555432221 011 167887788888775
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.048 Score=54.27 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=108.9
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
..|+.+++++.+...+..... ....+.|.+.+..|+++-.
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~-----~~~~l~~d~~~~~ly~~D~----------------------------------- 92 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLE-----NAIALDFHHRRELVFWSDV----------------------------------- 92 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCS-----CEEEEEEETTTTEEEEEET-----------------------------------
T ss_pred cceEEEeCCCCeeEEeecCCC-----ceEEEEEeccccEEEEEec-----------------------------------
Confidence 568999998777666543222 3457899988888888611
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-CeeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
....|++++++| ..+.+... .....+++.+.+..|+++... ...|++++++|
T Consensus 93 -------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~dG 147 (349)
T 3v64_C 93 -------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLDG 147 (349)
T ss_dssp -------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETTS
T ss_pred -------------cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------------CCeEEEEcCCC
Confidence 023567777755 33433222 123467888888888888542 23788899887
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~ 298 (595)
...+.+..... ..+..+...|++. .|||... + ....|+.++. +|...+.+....
T Consensus 148 ~~~~~l~~~~l------------~~P~~iavdp~~g-~ly~td~---~-------~~~~I~r~~~---dG~~~~~~~~~~ 201 (349)
T 3v64_C 148 AHRKVLLWQSL------------EKPRAIALHPMEG-TIYWTDW---G-------NTPRIEASSM---DGSGRRIIADTH 201 (349)
T ss_dssp CSCEEEECTTC------------SCEEEEEEETTTT-EEEEEEC---S-------SSCEEEEEET---TSCSCEESCCSS
T ss_pred CceEEEEeCCC------------CCcceEEEecCcC-eEEEecc---C-------CCCEEEEEeC---CCCCcEEEEECC
Confidence 76555432211 1123566677654 4777532 1 1245676675 554444443322
Q ss_pred -ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 299 -LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 299 -~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.....++|++++..|++... ....|+.+++++. ..+.+.
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~--~~~~~~ 241 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGS--HRKAVI 241 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC--SCEEEE
T ss_pred CCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCC--ceEEEE
Confidence 23456889987766555432 3348999999873 444443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0056 Score=64.48 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=71.1
Q ss_pred ccceEEcc-----CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEE-e-cCCcEEEEEe
Q 007620 33 INFVSWSP-----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-V-NNSTLLIFTI 105 (595)
Q Consensus 33 ~~~~~~SP-----DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W-s-pdg~~l~~~~ 105 (595)
..+|..|. ||++| |+.. .....|.++|+++.+..+++..+.+. ....+.+ + ||+++|+...
T Consensus 87 ~hh~~~s~t~g~~DG~~l-fVnd--------~~~~rVavIdl~t~~~~~ii~ip~g~---~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 87 LHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp BCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred CCccccCCCCCCcCCCEE-EEEc--------CCCCEEEEEECCCceEeeEEeCCCCC---CCcceeeeecCCCcEEEEec
Confidence 44588898 99875 5543 34678999999999877765544321 3446676 5 9999987753
Q ss_pred cCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC-CC-eeecCCCCeeeeeEEC
Q 007620 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT-AKDFGTPAVYTAVEPS 183 (595)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~lt~~~~~~~~~~S 183 (595)
..... + ..+|+. .+ . .++ -...+-++|.+ .+ ..+|.-+.....+..|
T Consensus 155 ~~~~p-------~--------~~dg~~----l~-~-----~~~------~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 EDETP-------L--------VNDGTN----ME-D-----VAN------YVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CSCEE-------S--------SCSSSS----TT-C-----GGG------EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred ccccc-------c--------CCCCcc----cc-c-----ccc------cCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 21000 0 011210 00 0 001 13456778884 33 3344332233467899
Q ss_pred CCCCeEEEEEccc
Q 007620 184 PDQKYVLITSMHR 196 (595)
Q Consensus 184 pDg~~l~~~~~~~ 196 (595)
|||++++++..+.
T Consensus 204 pdGk~~~vt~~~s 216 (595)
T 1fwx_A 204 YEGKWAFSTSYNS 216 (595)
T ss_dssp SSSSEEEEEESCT
T ss_pred CCCCEEEEEecCc
Confidence 9999999887553
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0087 Score=61.39 Aligned_cols=52 Identities=2% Similarity=0.136 Sum_probs=34.5
Q ss_pred ceEEEEcC-CCCe-eecCC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 157 AQLVLGSL-DGTA-KDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 157 ~~l~~~d~-~g~~-~~lt~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
..|.++|+ +++. ..+.. ...+..++|+|++++|+....+ ..|.+||+..++.
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~ 248 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-------------GIIDIWDIRFNVL 248 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-------------SCEEEEETTTTEE
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEEcCCccE
Confidence 35666777 4543 33332 2356789999999998877642 3688999886554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.043 Score=51.74 Aligned_cols=193 Identities=11% Similarity=-0.024 Sum_probs=102.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......++|||+ |++ +. . ...|++++.+++....+..... .....+.++++|+ |++...
T Consensus 68 ~p~~i~~~~~g~-l~v-~~--------~-~~~i~~~d~~~~~~~~~~~~~~----~~p~~i~~~~~g~-l~v~~~----- 126 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYV-TD--------F-NNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVDTQGA-VYVADR----- 126 (270)
T ss_dssp SCCCEEECTTCC-EEE-EE--------T-TTEEEEECTTCSCCEECCCCSC----SSEEEEEECTTCC-EEEEEG-----
T ss_pred CcceeEECCCCC-EEE-Ec--------C-CCEEEEEeCCCceEeeeecCCc----CCCcceEECCCCC-EEEEEC-----
Confidence 466789999998 444 32 1 3578999988766554421110 1245678888887 444310
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCC--CeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~--~~~~~~~~SpDg~~ 188 (595)
....|++++... ........ .....++++|+|+
T Consensus 127 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~- 162 (270)
T 1rwi_B 127 -------------------------------------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN- 162 (270)
T ss_dssp -------------------------------------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-
T ss_pred -------------------------------------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-
Confidence 012345554422 22221111 1234788999997
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
|+++... ...|+++|.+++.......... ..+..+.+.++|. |+....
T Consensus 163 l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~d~~g~--l~v~~~------ 210 (270)
T 1rwi_B 163 VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAGT--VYVTEH------ 210 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTCC--EEEEET------
T ss_pred EEEEECC------------CCEEEEEecCCCceEeecccCC------------CCceEEEECCCCC--EEEEEC------
Confidence 6665432 2378899988765544321110 1123466677764 554311
Q ss_pred ccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
....+++++. .+.....+.... .....+.+++||..++.+. ....|.++++..
T Consensus 211 -----~~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~----~~~~v~~~~~~~ 264 (270)
T 1rwi_B 211 -----NTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR----GNDRVVKLTSLE 264 (270)
T ss_dssp -----TTSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCCEEEEEG----GGTEEEEECCCG
T ss_pred -----CCCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCCEEEEEC----CCCEEEEEcCCC
Confidence 1234566664 332322222111 2345678889987554432 233788887765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0034 Score=66.44 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=74.3
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-E-EEeccCCCCccCCccccccccCCCCc--eeec
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-V-RELCDLPPAEDIPVCYNSVREGMRSI--SWRA 251 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~--~wsp 251 (595)
.+..++|+|++ .|+..+. ...+.+||+.++. . ..+... ...+..+ .|++
T Consensus 268 ~v~sv~~s~~~-~lasgs~-------------DgtV~lWD~~~~~~~~~~~~~H-------------~~~V~sv~~~~s~ 320 (524)
T 2j04_B 268 LITTFDFLSPT-TVVCGFK-------------NGFVAEFDLTDPEVPSFYDQVH-------------DSYILSVSTAYSD 320 (524)
T ss_dssp CEEEEEESSSS-EEEEEET-------------TSEEEEEETTBCSSCSEEEECS-------------SSCEEEEEEECCT
T ss_pred CEEEEEecCCC-eEEEEeC-------------CCEEEEEECCCCCCceEEeecc-------------cccEEEEEEEcCC
Confidence 45689999875 5655543 2378899987542 1 112111 1112344 4677
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccc-cC-ccccceeecCCCcEEEEEEeecccceEEEE
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LD-LRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~ 328 (595)
+|...|+-. .....+.+||+ ..++. ..+.. .. ..+..+.|+||+..++.... ++ .+.+
T Consensus 321 ~g~~~laS~------------S~D~tvklWD~---~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~--d~--tv~l 381 (524)
T 2j04_B 321 FEDTVVSTV------------AVDGYFYIFNP---KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG--AS--SLRA 381 (524)
T ss_dssp TSCCEEEEE------------ETTSEEEEECG---GGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS--SS--EEEE
T ss_pred CCCeEEEEe------------ccCCeEEEEEC---CCCCcccccccccccCcccceEeCCCcCeEEEeCC--CC--cEEE
Confidence 763223222 12345677775 32121 12221 11 23567899999987766432 22 4666
Q ss_pred EeCCCCCCCcEEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 329 VCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 329 ~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+|+.++ .....+..+ .+.. +.|+|+|+.|+...
T Consensus 382 wd~~~~-~~~~~l~gH~~~V~s---------va~Sp~g~~l~Sgs 416 (524)
T 2j04_B 382 VPSRAA-FAVHPLVSRETTITA---------IGVSRLHPMVLAGS 416 (524)
T ss_dssp EETTCT-TCCEEEEECSSCEEE---------EECCSSCCBCEEEE
T ss_pred EECccc-ccceeeecCCCceEE---------EEeCCCCCeEEEEE
Confidence 787764 223444332 2333 78999999776544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0093 Score=63.10 Aligned_cols=115 Identities=5% Similarity=-0.004 Sum_probs=63.3
Q ss_pred eeeee--EECCCC-CeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeec
Q 007620 176 VYTAV--EPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (595)
Q Consensus 176 ~~~~~--~~SpDg-~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (595)
.+..+ .|+|+| +.|+-.+. ...+.+||+.+++. ..+...... .....+.|+|
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~-------------D~tvklWD~~~~~~~~~~~~~~~~-----------~~v~~v~fsp 365 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAV-------------DGYFYIFNPKDIATTKTTVSRFRG-----------SNLVPVVYCP 365 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEET-------------TSEEEEECGGGHHHHCEEEEECSC-----------CSCCCEEEET
T ss_pred cEEEEEEEcCCCCCeEEEEecc-------------CCeEEEEECCCCCccccccccccc-----------CcccceEeCC
Confidence 34555 689998 55554443 23688999875432 122110000 0124588999
Q ss_pred CCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
+++. ++.. ...+.+.++|+ ..+.....+......+..+.|||||..|+... .++ .+.++|+
T Consensus 366 ~~~~-l~s~------------~~d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs--~Dg--tv~lwd~ 426 (524)
T 2j04_B 366 QIYS-YIYS------------DGASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVLAGS--ADG--SLIITNA 426 (524)
T ss_dssp TTTE-EEEE------------CSSSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCEEEE--TTT--EEECCBS
T ss_pred CcCe-EEEe------------CCCCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEEEEE--CCC--EEEEEec
Confidence 9874 2211 11235666775 22222344555566778899999998776653 234 4555565
Q ss_pred CC
Q 007620 332 GS 333 (595)
Q Consensus 332 ~~ 333 (595)
..
T Consensus 427 ~~ 428 (524)
T 2j04_B 427 AR 428 (524)
T ss_dssp CS
T ss_pred hH
Confidence 54
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.44 E-value=0.099 Score=53.05 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=105.8
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
..|..++++++....+..... ....+.|.+.+..|+++-..
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~-----~~~~l~~d~~~~~lywsD~~---------------------------------- 132 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS---------------------------------- 132 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCS-----CEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred ceeEEEccCCcceeEeccccC-----cceEEeeeeccCceEEEecC----------------------------------
Confidence 689999998877665543222 34578999988888886210
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-----CeeecCC-C-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~lt~-~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
...|++++++| ....+.. . .....+++.+.++.|+++... ...|.++
T Consensus 133 --------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------------~~~I~~~ 186 (400)
T 3p5b_L 133 --------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 186 (400)
T ss_dssp --------------TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred --------------CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------------CCeEEEE
Confidence 12455555543 1222222 1 233467777777888877532 2378899
Q ss_pred cCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec
Q 007620 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (595)
Q Consensus 215 d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l 294 (595)
+++|...+.+..... ..++.+...|.+. .|||... + ....|+.+++ +|...+.+
T Consensus 187 ~~~g~~~~~l~~~~~------------~~P~~iavdp~~g-~ly~td~---~-------~~~~I~~~~~---dG~~~~~~ 240 (400)
T 3p5b_L 187 DTKGVKRKTLFRENG------------SKPRAIVVDPVHG-FMYWTDW---G-------TPAKIKKGGL---NGVDIYSL 240 (400)
T ss_dssp CTTTCSEEEEEECSS------------CCEEEEEEETTTT-EEEEEEC---S-------SSCCEEEEET---TSCSCEEE
T ss_pred eCCCCceEEEEeCCC------------CCcceEEEecccC-eEEEEeC---C-------CCCEEEEEeC---CCCccEEE
Confidence 998876665543211 1123455666544 3776532 1 1134666665 55444444
Q ss_pred cccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 295 HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 295 ~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.... .....+++++++..|++.+ .....|+.+|+++ ...+.+.
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~aD---~~~~~I~~~d~dG--~~~~~~~ 284 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNG--GNRKTIL 284 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTS--CCCEEEE
T ss_pred EECCCCceEEEEEEeCCCEEEEEE---CCCCEEEEEeCCC--CccEEEE
Confidence 3322 3345678888877665543 2345899999988 3445553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.03 Score=55.14 Aligned_cols=120 Identities=10% Similarity=0.097 Sum_probs=61.0
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC-CceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...++++|++..|+++... ...|.+++.+ +...+.+...... .....+.++| +
T Consensus 198 p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~~~~~~-----------~~~~~~~~~p-g-- 251 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIKHASFG-----------RNVFAISYIP-G-- 251 (329)
T ss_dssp EEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEECCTTTT-----------TCEEEEEEET-T--
T ss_pred CcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEeccccC-----------CCcceeeecC-C--
Confidence 3578999997778777532 2478899988 5544554321100 1122455666 2
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc----cCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~----~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
+++. .++. ..........+++++. ..++...... .......+.++|||..++.+. ...+|+++++
T Consensus 252 -~~~~--~~g~-~~v~~~~~~~v~~~~~---~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~----~~~~I~~~~~ 320 (329)
T 3fvz_A 252 -FLFA--VNGK-PYFGDQEPVQGFVMNF---SSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA----HTNTVWKFTL 320 (329)
T ss_dssp -EEEE--EECC-CCTTCSCCCCEEEEET---TTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES----SSCCEEEEEE
T ss_pred -EEEE--eCCC-EEeccCCCcEEEEEEc---CCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC----CCCEEEEEeC
Confidence 2222 1211 1110112235666664 2234333221 112345678899995555543 2336777777
Q ss_pred CC
Q 007620 332 GS 333 (595)
Q Consensus 332 ~~ 333 (595)
++
T Consensus 321 ~~ 322 (329)
T 3fvz_A 321 TE 322 (329)
T ss_dssp EE
T ss_pred Cc
Confidence 65
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0097 Score=67.56 Aligned_cols=110 Identities=9% Similarity=0.046 Sum_probs=62.2
Q ss_pred CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCC
Q 007620 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (595)
Q Consensus 175 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (595)
..+..++|+| |++|+.... ...|.+||+.+++. ..+. .+ .....+.|+|++
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~-------------D~~v~lWd~~~~~~~~~~~-~~-------------~~V~~v~~sp~g 110 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINA-------------KDTVYVLSLYSQKVLTTVF-VP-------------GKITSIDTDASL 110 (902)
T ss_dssp CCEEEEEEET-TTEEEEEET-------------TCEEEEEETTTCSEEEEEE-CS-------------SCEEEEECCTTC
T ss_pred CCEEEEEEcC-CCEEEEEEC-------------cCeEEEEECCCCcEEEEEc-CC-------------CCEEEEEECCCC
Confidence 3467899999 886666543 23789999886543 3332 11 113457889998
Q ss_pred CeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee------------ccccCccccceeecCCCc-EEEEEEeec
Q 007620 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI------------LHKLDLRFRSVSWCDDSL-ALVNETWYK 320 (595)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~------------l~~~~~~~~~~~wspDg~-~l~~~~~~~ 320 (595)
+. |+.. .....+.+||+ .+++... +......+..+.|+|++. .++... .
T Consensus 111 ~~-l~sg------------s~dg~V~lwd~---~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~--~ 172 (902)
T 2oaj_A 111 DW-MLIG------------LQNGSMIVYDI---DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY--E 172 (902)
T ss_dssp SE-EEEE------------ETTSCEEEEET---TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC--S
T ss_pred CE-EEEE------------cCCCcEEEEEC---CCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe--C
Confidence 73 3322 11235666775 3333211 111234577899999753 444432 2
Q ss_pred ccceEEEEEeCCC
Q 007620 321 TSQTRTWLVCPGS 333 (595)
Q Consensus 321 ~~~~~L~~~d~~~ 333 (595)
++ .+ ++|+.+
T Consensus 173 dg--~v-lWd~~~ 182 (902)
T 2oaj_A 173 YV--TL-TYSLVE 182 (902)
T ss_dssp SC--EE-EEETTT
T ss_pred CC--cE-EEECCC
Confidence 23 46 778877
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.018 Score=54.70 Aligned_cols=198 Identities=8% Similarity=-0.025 Sum_probs=105.2
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
.....|+||| +| |++... .+.+.|.++|+++|+..+-..... .......+.+|+.|+.+..
T Consensus 23 ~~Gl~~~~dg-~L-yvstg~------~~~s~v~~iD~~tg~v~~~i~l~~-----~~fgeGi~~~g~~lyv~t~------ 83 (266)
T 2iwa_A 23 TQGLVYAEND-TL-FESTGL------YGRSSVRQVALQTGKVENIHKMDD-----SYFGEGLTLLNEKLYQVVW------ 83 (266)
T ss_dssp EEEEEECSTT-EE-EEEECS------TTTCEEEEEETTTCCEEEEEECCT-----TCCEEEEEEETTEEEEEET------
T ss_pred cccEEEeCCC-eE-EEECCC------CCCCEEEEEECCCCCEEEEEecCC-----CcceEEEEEeCCEEEEEEe------
Confidence 4678999996 54 544321 245889999999998655433222 1112233344666666521
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVL 190 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~ 190 (595)
....++++|. +.+ ...+..+ .-....+++||++|+
T Consensus 84 ------------------------------------------~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~ 120 (266)
T 2iwa_A 84 ------------------------------------------LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILY 120 (266)
T ss_dssp ------------------------------------------TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEE
T ss_pred ------------------------------------------cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEE
Confidence 1246778887 453 3344322 112345778999988
Q ss_pred EEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
++. . ...|+++|.++.+ .+.+.-... ..|. .....+.|. ||+ ||.- .
T Consensus 121 vs~-g------------s~~l~viD~~t~~v~~~I~Vg~~--~~p~------~~~nele~~-dg~--lyvn-~------- 168 (266)
T 2iwa_A 121 GSD-G------------TSILYEIDPHTFKLIKKHNVKYN--GHRV------IRLNELEYI-NGE--VWAN-I------- 168 (266)
T ss_dssp EEC-S------------SSEEEEECTTTCCEEEEEECEET--TEEC------CCEEEEEEE-TTE--EEEE-E-------
T ss_pred EEC-C------------CCeEEEEECCCCcEEEEEEECCC--Cccc------ccceeEEEE-CCE--EEEe-c-------
Confidence 763 2 2379999988644 344321100 0000 001134555 542 5432 1
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccC--------------ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--------------~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
...+.+.++|. .+ ++........ .....++|+|++..++... ..+.+|+.+++..
T Consensus 169 ---~~~~~V~vID~--~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg---k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 ---WQTDCIARISA--KD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG---KLWPKLFEIKLHL 237 (266)
T ss_dssp ---TTSSEEEEEET--TT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE---TTCSEEEEEEEEE
T ss_pred ---CCCCeEEEEEC--CC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC---CCCCeEEEEEEec
Confidence 12346777785 34 4544322211 1235688999987643322 1345788888765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.062 Score=51.29 Aligned_cols=132 Identities=9% Similarity=0.124 Sum_probs=71.7
Q ss_pred eEEEEcCCCCe-eecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCC
Q 007620 158 QLVLGSLDGTA-KDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (595)
Q Consensus 158 ~l~~~d~~g~~-~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~ 234 (595)
.|++++.+|+. +.+... .....++++|+|+ |+++... ...|+++|.++.....+..... .
T Consensus 101 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~---~- 163 (286)
T 1q7f_A 101 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECK------------VMRVIIFDQNGNVLHKFGCSKH---L- 163 (286)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETT------------TTEEEEECTTSCEEEEEECTTT---C-
T ss_pred EEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECC------------CCEEEEEcCCCCEEEEeCCCCc---c-
Confidence 45666665542 333222 2345789999997 5555432 2378899987766655532100 0
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC--ccccceeecCCCcE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLA 312 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~--~~~~~~~wspDg~~ 312 (595)
..+..+.+.++|. ++.... ....+++++. ++.....+.... .....+.+++||..
T Consensus 164 -------~~p~~i~~~~~g~--l~v~~~-----------~~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 164 -------EFPNGVVVNDKQE--IFISDN-----------RAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp -------SSEEEEEECSSSE--EEEEEG-----------GGTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred -------CCcEEEEECCCCC--EEEEEC-----------CCCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCCE
Confidence 1123567778765 544311 1235666674 432222232111 23456788999976
Q ss_pred EEEEEeecccce-EEEEEeCCC
Q 007620 313 LVNETWYKTSQT-RTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~-~L~~~d~~~ 333 (595)
++... ... .|.++|.++
T Consensus 221 ~v~~~----~~~~~i~~~~~~g 238 (286)
T 1q7f_A 221 LIADN----HNNFNLTIFTQDG 238 (286)
T ss_dssp EEEEC----SSSCEEEEECTTS
T ss_pred EEEeC----CCCEEEEEECCCC
Confidence 66543 222 788888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.17 Score=51.39 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=33.8
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
..+..+||| |+++....+. ...+..+.++|.++.++. .+....... .-...+.|+|+++
T Consensus 141 h~~~~~pdG--i~Vs~~g~~~------g~~~g~v~vlD~~T~~v~~~~~~~~~~~----------~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 141 HTVHCGPDA--IYISALGNEE------GEGPGGILMLDHYSFEPLGKWEIDRGDQ----------YLAYDFWWNLPNE 200 (462)
T ss_dssp EEEEECSSC--EEEEEEEETT------SCSCCEEEEECTTTCCEEEECCSBCTTC----------CCCCCEEEETTTT
T ss_pred cceeECCCe--EEEEcCCCcC------CCCCCeEEEEECCCCeEEEEEccCCCCc----------cccceEEECCCCC
Confidence 466789999 6666544321 123468999998866543 332110000 0022578899998
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.33 E-value=0.1 Score=52.90 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=103.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC----ceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----~~~~lt~~~ 81 (595)
.|...+|. ++....+. ..........|++.+++|+|+-. ....|++++++++ ....+....
T Consensus 93 ~I~~i~l~----~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~---------~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 93 EVRKMTLD----RSEYTSLI--PNLRNVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEECTT----SCSCEEEE--CSCSCEEEEEEETTTTEEEEEET---------TTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEEccC----CcceeEec--cccCcceEEeeeeccCceEEEec---------CCCeEEEEEcccCCCCCcceEEEeCC
Confidence 34444554 44444443 23335677899998888877642 3467888888762 233332211
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
-. ....++..+.++.|+++-. ....|.+
T Consensus 158 ~~----~p~glavD~~~~~lY~~d~------------------------------------------------~~~~I~~ 185 (400)
T 3p5b_L 158 IQ----APDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSV 185 (400)
T ss_dssp CS----CEEEEEEETTTTEEEEEET------------------------------------------------TTTEEEE
T ss_pred CC----CcccEEEEecCCceEEEEC------------------------------------------------CCCeEEE
Confidence 00 2335666666666777511 1245777
Q ss_pred EcCCCC-eeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccc
Q 007620 162 GSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (595)
Q Consensus 162 ~d~~g~-~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~ 238 (595)
++++|. .+.+... .....+++.|.+.+|+++.... ...|++++++|...+.+....+
T Consensus 186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-----------~~~I~~~~~dG~~~~~~~~~~l--------- 245 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI--------- 245 (400)
T ss_dssp ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS-----------SCCEEEEETTSCSCEEEECSSC---------
T ss_pred EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC-----------CCEEEEEeCCCCccEEEEECCC---------
Confidence 888764 3333322 2345788999888888875322 2378899999876665532211
Q ss_pred ccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc
Q 007620 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (595)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~ 295 (595)
..+..+.+.+++. .|||... ..+.|+.++. +|...+.+.
T Consensus 246 ---~~P~glavd~~~~-~lY~aD~-----------~~~~I~~~d~---dG~~~~~~~ 284 (400)
T 3p5b_L 246 ---QWPNGITLDLLSG-RLYWVDS-----------KLHSISSIDV---NGGNRKTIL 284 (400)
T ss_dssp ---SCEEEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCCCEEEE
T ss_pred ---CceEEEEEEeCCC-EEEEEEC-----------CCCEEEEEeC---CCCccEEEE
Confidence 1123577887765 4888631 1245666675 554444444
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.011 Score=60.00 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=36.4
Q ss_pred cccceEEcc--------CCCEEEEEEecccccccCCCceEEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEE
Q 007620 32 KINFVSWSP--------DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (595)
Q Consensus 32 ~~~~~~~SP--------DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspdg~~l~ 102 (595)
.+....||| ||+.||-.+. ++.-.|| |+.++. ...+..... .+.++.|+|++..++
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~--------D~tv~~W--d~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l 202 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGD--------DCTLIIW--RLTDEGPILAGYPLSS-----PGISVQFRPSNPNQL 202 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEET--------TSEEEEE--EEETTEEEEEEEECSS-----CEEEEEEETTEEEEE
T ss_pred ceEEEEEccccccccCCCCCEEEEEEC--------CCeEEEE--ECCCCceeeeecCCCC-----CcEEEEECCCCCceE
Confidence 578899998 8988776553 3444444 765554 333333332 456899999987544
Q ss_pred EE
Q 007620 103 FT 104 (595)
Q Consensus 103 ~~ 104 (595)
.+
T Consensus 203 ~~ 204 (393)
T 4gq1_A 203 IV 204 (393)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=2.5e-05 Score=77.93 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=49.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+++++.||.+|.+++++|.+.. + +.|+||++|+. .... ..+...+.|+++||+|+.
T Consensus 67 ~~~~~~~~~~dg~~i~~~~~~P~~~~--~--~~p~vv~~HG~--------------g~~~--~~~~~~~~l~~~G~~v~~ 126 (337)
T 1vlq_A 67 EAYDVTFSGYRGQRIKGWLLVPKLEE--E--KLPCVVQYIGY--------------NGGR--GFPHDWLFWPSMGYICFV 126 (337)
T ss_dssp EEEEEEEECGGGCEEEEEEEEECCSC--S--SEEEEEECCCT--------------TCCC--CCGGGGCHHHHTTCEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEEecCCCC--C--CccEEEEEcCC--------------CCCC--CCchhhcchhhCCCEEEE
Confidence 78999999999999999999998742 2 34999997742 1111 112334688999999999
Q ss_pred CCCCceee
Q 007620 561 GPSIPIIG 568 (595)
Q Consensus 561 ~~~~~~~~ 568 (595)
++.+..|
T Consensus 127 -~d~rG~g 133 (337)
T 1vlq_A 127 -MDTRGQG 133 (337)
T ss_dssp -ECCTTCC
T ss_pred -ecCCCCC
Confidence 6666555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.071 Score=51.01 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=48.9
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
...|++.|.+ +|+...-.............++|||+.|+ +. ...|+.+|.++....++.....
T Consensus 14 ~~~v~~~d~~----tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~----------~~~V~~~d~~G~~~W~~~~~~~- 76 (276)
T 3no2_A 14 WNKIAIINKD----TKEIVWEYPLEKGWECNSVAATKAGEILF--SY----------SKGAKMITRDGRELWNIAAPAG- 76 (276)
T ss_dssp CSEEEEEETT----TTEEEEEEECCTTCCCCEEEECTTSCEEE--EC----------BSEEEEECTTSCEEEEEECCTT-
T ss_pred CCEEEEEECC----CCeEEEEeCCCccCCCcCeEECCCCCEEE--eC----------CCCEEEECCCCCEEEEEcCCCC-
Confidence 4568888887 66554333222212477889999998665 22 2458888984333444432111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
..+.+..+++||+.|+..
T Consensus 77 ---~~~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 77 ---CEMQTARILPDGNALVAW 94 (276)
T ss_dssp ---CEEEEEEECTTSCEEEEE
T ss_pred ---ccccccEECCCCCEEEEe
Confidence 134567888999977664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.21 Score=53.93 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=105.0
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
.+|..+++++.+...+...... .....+.|.+++..|+++-.
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~---~~~~~l~~d~~~~~lywtD~----------------------------------- 56 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGV---KEASALDFDVTDNRIYWTDI----------------------------------- 56 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSC---SCEEEEEEETTTTEEEEEET-----------------------------------
T ss_pred CcEEEEECCCCCcceEEEcCCC---CceEEEEEECCCCEEEEEEC-----------------------------------
Confidence 6899999987654333222211 02347889998888888611
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-CeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
....|++++++| ..+.+...+ ....+++.+.++.|+++... ...|.+++++|
T Consensus 57 -------------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~------------~~~I~v~~~dG 111 (628)
T 4a0p_A 57 -------------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG------------TNRIEVSKLDG 111 (628)
T ss_dssp -------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETTS
T ss_pred -------------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC------------CCEEEEEecCC
Confidence 023566677765 333332222 23467777788888887432 24788999988
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~ 298 (595)
...+.+....+ ..++.+...|... .|||..+ + ....|+..+. +|...+.+...-
T Consensus 112 ~~~~~l~~~~l------------~~P~~iavdp~~G-~lY~tD~---g-------~~~~I~r~~~---dG~~~~~l~~~~ 165 (628)
T 4a0p_A 112 QHRQVLVWKDL------------DSPRALALDPAEG-FMYWTEW---G-------GKPKIDRAAM---DGSERTTLVPNV 165 (628)
T ss_dssp TTCEEEECSSC------------CCEEEEEEETTTT-EEEEEEC---S-------SSCEEEEEET---TSCSCEEEECSC
T ss_pred CcEEEEEeCCC------------CCcccEEEccCCC-eEEEeCC---C-------CCCEEEEEeC---CCCceEEEECCC
Confidence 76665542211 1134566666433 4777532 1 1235666665 555555554433
Q ss_pred ccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.....+.+++++..|+... .....|+.+|+++.
T Consensus 166 ~~P~GlalD~~~~~LY~aD---~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTD---LDTNLIESSNMLGL 198 (628)
T ss_dssp SSEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC
T ss_pred CCcceEEEccccCEEEEEE---CCCCEEEEEcCCCC
Confidence 3445677788776655543 23448999999884
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.12 Score=50.79 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=73.8
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
...++++|++..|+++.... ...|.+++.++.....+.......... .+.-..+..+.+.|++. .
T Consensus 145 P~~ia~~~~~g~lyv~d~~~-----------~~~I~~~~~~g~~~~~~~~~g~~~~~~---~~~~~~p~gia~d~~~g-~ 209 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYC-----------NSRIVQFSPSGKFVTQWGEESSGSSPR---PGQFSVPHSLALVPHLD-Q 209 (329)
T ss_dssp EEEEEECTTTCCEEEEECSS-----------CCEEEEECTTSCEEEEECEECCSSSCC---TTEESCEEEEEEETTTT-E
T ss_pred CcEEEEeCCCCeEEEEeCCC-----------CCeEEEEcCCCCEEEEeccCCCCCCCC---CcccCCCcEEEEECCCC-E
Confidence 35789999555566664211 237889997777666553221000000 00001123567788743 2
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccc--cCccccceeecCCCcEEEEEEe-e--cccceEEEEEe
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK--LDLRFRSVSWCDDSLALVNETW-Y--KTSQTRTWLVC 330 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~--~~~~~~~~~wspDg~~l~~~~~-~--~~~~~~L~~~d 330 (595)
||... . ..+.+.+++. +.|+... +.. .......+.++| +..+..+.. . +.....+++++
T Consensus 210 l~v~d---~--------~~~~I~~~~~---~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~ 274 (329)
T 3fvz_A 210 LCVAD---R--------ENGRIQCFKT---DTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMN 274 (329)
T ss_dssp EEEEE---T--------TTTEEEEEET---TTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEE
T ss_pred EEEEE---C--------CCCEEEEEEC---CCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEE
Confidence 55441 1 1235666674 3233332 211 122334567788 544433321 0 12234688888
Q ss_pred CCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+.++ +....+.... .....|. .+.++++| .||+..
T Consensus 275 ~~~g--~~~~~~~~~~-~~~~~p~--~ia~~~dG-~lyvad 309 (329)
T 3fvz_A 275 FSSG--EIIDVFKPVR-KHFDMPH--DIVASEDG-TVYIGD 309 (329)
T ss_dssp TTTC--CEEEEECCSS-SCCSSEE--EEEECTTS-EEEEEE
T ss_pred cCCC--eEEEEEcCCC-CccCCee--EEEECCCC-CEEEEE
Confidence 7763 3222221100 0111111 16778888 566654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.013 Score=64.43 Aligned_cols=185 Identities=12% Similarity=-0.011 Sum_probs=100.3
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
..|.++++++++...+..... ....+.|.+++..|+++-..
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~-----~p~gla~d~~~~~Ly~sD~~---------------------------------- 426 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS---------------------------------- 426 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCT-----TCCCCEEETTTTEEEECCTT----------------------------------
T ss_pred cceEEEeCCCCcceeeeccCc-----ceEEEccccccCeEEEEecC----------------------------------
Confidence 568888888777655533222 34578999988888885110
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-----CeeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
...|+++++++ ....+.... ....+++.+.+..|+++... ...|+++
T Consensus 427 --------------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~------------~~~I~v~ 480 (699)
T 1n7d_A 427 --------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 480 (699)
T ss_dssp --------------TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT------------TSCEEEE
T ss_pred --------------CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc------------CCeEEEE
Confidence 12344555533 112222111 22356777777777766321 2478899
Q ss_pred cCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec
Q 007620 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (595)
Q Consensus 215 d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l 294 (595)
++++...+.+..... ..++.+++.|++. .|||.. .+ ....|+++++ +|...+.+
T Consensus 481 d~dg~~~~~l~~~~~------------~~P~giavDp~~g-~ly~td---~~-------~~~~I~~~~~---dG~~~~~l 534 (699)
T 1n7d_A 481 DTKGVKRKTLFREQG------------SKPRAIVVDPVHG-FMYWTD---WG-------TPAKIKKGGL---NGVDIYSL 534 (699)
T ss_dssp BSSSCCEEEECCCSS------------CCCCCEECCSSSS-CCEECC---CS-------SSCCEEBCCS---SSCCCCEE
T ss_pred ecCCCceEEEEeCCC------------CCcceEEEccCCC-cEEEcc---cC-------CCCeEEEEeC---CCCCeeEE
Confidence 998877666543211 1123566666544 366541 11 1135666664 44333333
Q ss_pred cccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 295 HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 295 ~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.... .....++|+|++..|++.. .....|+++++++ ...+.+.
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD---~~~~~I~~~d~dG--~~~~~~~ 578 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNG--GNRKTIL 578 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEE---TTTTEEEEECSSS--SCCEEEC
T ss_pred EeCCCCCccEEEEeccCCEEEEEe---cCCCeEEEEccCC--CceEEEE
Confidence 3222 2345688999876555443 2345899999987 3445453
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0004 Score=70.97 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=53.0
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCC-------cccCCCCchhHHHh
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-------EFSGMTPTSSLIFL 552 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~-------~~~~~~~~~~q~la 552 (595)
+..|.++|++.||.+|+|+|++|.+.+ + +.|+||++|+...+ ...+.+.+. .|........+.||
T Consensus 90 ~~~e~v~~~~~~g~~l~~~l~~P~~~~--~--~~P~Vv~~HG~g~~----~~~~~~~~g~~~~~~~~y~~~~~~~a~~la 161 (398)
T 3nuz_A 90 YRLEKWEFYPLPKCVSTFLVLIPDNIN--K--PVPAILCIPGSGGN----KEGLAGEPGIAPKLNDRYKDPKLTQALNFV 161 (398)
T ss_dssp EEEEEEEECCSTTBCEEEEEEEESSCC--S--CEEEEEEECCTTCC----HHHHHTCCCSSSTTCCSTTCTTTCHHHHHH
T ss_pred EEEEEEEEEcCCCcEEEEEEEeCCCCC--C--CccEEEEEcCCCCC----cccccccccccccccccccchHHHHHHHHH
Confidence 368889999999999999999998752 2 45999998864110 000000000 01100013468999
Q ss_pred ccCeEEEeCCCCceeecC
Q 007620 553 ARRFAVLAGPSIPIIGEG 570 (595)
Q Consensus 553 ~~GY~Vl~~~~~~~~~~~ 570 (595)
++||+|+. ++.+..|..
T Consensus 162 ~~Gy~Vl~-~D~rG~G~s 178 (398)
T 3nuz_A 162 KEGYIAVA-VDNPAAGEA 178 (398)
T ss_dssp TTTCEEEE-ECCTTSGGG
T ss_pred HCCCEEEE-ecCCCCCcc
Confidence 99999999 777666643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.19 Score=55.66 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=109.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC----ceEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g----~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
....+.|++.+.+|+|+-. ....|+++++++. ....+..... .....++..+.++.||++-.
T Consensus 425 ~~~gl~~d~~~~~lY~sD~---------~~~~I~~~~l~g~~~~~~~~~vi~~~l----~~P~GLAvD~~~~~LY~tD~- 490 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRDI----QAPDGLAVDWIHSNIYWTDS- 490 (791)
T ss_dssp SEEEEEEETTTTEEEEEET---------TTTEEEEEEC--------CEEEECSSC----SCCCEEEEETTTTEEEEEET-
T ss_pred ceEEEeecccCCeeEEeec---------cceeEEEEeccCCCCCcceeEEEecCC----CCcceeeeeecCCcEEEEec-
Confidence 4667888888888777542 3467888888763 2233322110 02346677777777777511
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCC--CeeeeeEECC
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSP 184 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~--~~~~~~~~Sp 184 (595)
...+|++++++|. .+.|... .....+++.|
T Consensus 491 -----------------------------------------------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp 523 (791)
T 3m0c_C 491 -----------------------------------------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523 (791)
T ss_dssp -----------------------------------------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEET
T ss_pred -----------------------------------------------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEec
Confidence 1246778888774 3333322 2345889999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
.+.+|+++.... ...|++++++|...+.+....+. .+..+...+.+. .|||...
T Consensus 524 ~~g~LYwtD~g~-----------~~~I~~~~~dG~~~~~lv~~~l~------------~P~GLavD~~~~-~LYwaD~-- 577 (791)
T 3m0c_C 524 VHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENIQ------------WPNGITLDLLSG-RLYWVDS-- 577 (791)
T ss_dssp TTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSCS------------CEEEEEEETTTT-EEEEEET--
T ss_pred CCCCEEEecCCC-----------CCeEEEEecCCCceEEEEeCCCC------------CceEEEEecCCC-eEEEEeC--
Confidence 988898885322 13789999998777666432110 122455555554 4877631
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCceeccccCccc-cceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~-~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
..+.|.++++ +|...+.+....... ..+..+.++..|+... .....|++++..++
T Consensus 578 ---------~~~~I~~~d~---dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD---~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 578 ---------KLHSISSIDV---NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD---IINEAIFSANRLTG 633 (791)
T ss_dssp ---------TTTEEEEEET---TSCSCEEEEECTTTTSSEEEEEEETTEEEEEE---TTTTEEEEEETTTC
T ss_pred ---------CCCcEEEEec---CCCceEEEecCCCccCCCCEEEEeCCEEEEEE---CCCCEEEEEeCCCC
Confidence 1245666675 554454444332221 1222332333443332 23347888886554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.12 Score=57.29 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=102.7
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
..|..+++.+++...+..... ....+.|.+.+..|+++-.
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~-----~~~gl~~d~~~~~lY~sD~----------------------------------- 443 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDL----------------------------------- 443 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCS-----SEEEEEEETTTTEEEEEET-----------------------------------
T ss_pred cceeEeeccCCcceeeecCCC-----ceEEEeecccCCeeEEeec-----------------------------------
Confidence 567888887776555543222 2446788887777777621
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-----CeeecCC-C-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~lt~-~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
....|++++++| ..+.+.. . .....+++.+.++.|+++... ...|+++
T Consensus 444 -------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v~ 498 (791)
T 3m0c_C 444 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 498 (791)
T ss_dssp -------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEEE
Confidence 012355555543 1222222 1 123467888888888888542 2478999
Q ss_pred cCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec
Q 007620 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (595)
Q Consensus 215 d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l 294 (595)
+++|...+.|....+ ..++.++..|.+. .|||..+ + ....|+++++ +|...+.+
T Consensus 499 ~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g-~LYwtD~---g-------~~~~I~~~~~---dG~~~~~l 552 (791)
T 3m0c_C 499 DTKGVKRKTLFRENG------------SKPRAIVVDPVHG-FMYWTDW---G-------TPAKIKKGGL---NGVDIYSL 552 (791)
T ss_dssp ETTSSSEEEEEECTT------------CCEEEEEEETTTT-EEEEEEC---S-------SSCEEEEEET---TSCCEEEE
T ss_pred eCCCCeEEEEEeCCC------------CCcceEEEecCCC-CEEEecC---C-------CCCeEEEEec---CCCceEEE
Confidence 999877766643211 1123456666544 4777632 1 1135666665 55444444
Q ss_pred cccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe
Q 007620 295 HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (595)
Q Consensus 295 ~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~ 342 (595)
.... .....+++.+.+..|+... .....|+++++++. ..+.+.
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD---~~~~~I~~~d~dG~--~~~~v~ 596 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG--NRKTIL 596 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEe---CCCCcEEEEecCCC--ceEEEe
Confidence 4322 2344566776665555443 23458999999883 445554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.24 Score=47.96 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=43.1
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
..+.+.+++.+.....+.|+|||+ |+++ .. ....|++++.+++....+ .... ....+.+++||+
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~-lyv~-d~--------~~~~I~~~d~~g~~~~~~-~~~~-----~p~gia~~~dG~ 84 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGT-IFVT-NH--------EVGEIVSITPDGNQQIHA-TVEG-----KVSGLAFTSNGD 84 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEE-ET--------TTTEEEEECTTCCEEEEE-ECSS-----EEEEEEECTTSC
T ss_pred CceEeEeCCCCCCcceEEECCCCC-EEEE-eC--------CCCeEEEECCCCceEEEE-eCCC-----CceeEEEcCCCc
Confidence 345556666555677889999997 5454 32 346799999876543332 2222 345788999998
Q ss_pred EEEEE
Q 007620 100 LLIFT 104 (595)
Q Consensus 100 ~l~~~ 104 (595)
|++.
T Consensus 85 -l~va 88 (306)
T 2p4o_A 85 -LVAT 88 (306)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 4443
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00073 Score=68.84 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=53.1
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCC----C---cccCCCCchhHHHh
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP----N---EFSGMTPTSSLIFL 552 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp----~---~~~~~~~~~~q~la 552 (595)
...|.+++++.||.+|+|+|++|.+.. + +.|+||++|+...+ ...+.+.. + .|........+.||
T Consensus 85 ~~~e~v~~~~~~g~~l~~~l~~P~~~~--~--~~P~Vl~~HG~g~~----~~~~~~~~~~~~~~~~~y~~~~~~~a~~la 156 (391)
T 3g8y_A 85 YILEKWEFYPFPKSVSTFLVLKPEHLK--G--AVPGVLCIPGSGRT----KEGLVGEPGICDKLTEDYNNPKVSMALNMV 156 (391)
T ss_dssp EEEEEEEECCSTTCCEEEEEEEETTCC--S--CEEEEEEECCTTCC----HHHHTTCCCSSGGGCCCTTSTTTCHHHHHH
T ss_pred EEEEEEEEEcCCCCEEEEEEEeCCCCC--C--CCCEEEEeCCCCCC----chhhccccccccccchhhcchHHHHHHHHH
Confidence 367889999999999999999998752 2 45999998864111 00011110 0 01100113468999
Q ss_pred ccCeEEEeCCCCceeec
Q 007620 553 ARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 553 ~~GY~Vl~~~~~~~~~~ 569 (595)
++||+|+. ++.+..|.
T Consensus 157 ~~G~~Vl~-~D~rg~G~ 172 (391)
T 3g8y_A 157 KEGYVAVA-VDNAAAGE 172 (391)
T ss_dssp TTTCEEEE-CCCTTSGG
T ss_pred HCCCEEEE-ecCCCccc
Confidence 99999999 88777665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.011 Score=65.02 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=58.4
Q ss_pred ceEEEEcCCCC-eeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccC
Q 007620 157 AQLVLGSLDGT-AKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 157 ~~l~~~d~~g~-~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~ 233 (595)
..|++++++|. .+.|.... ....+++.|++.+|+++.... ...|++++++|...+.+....+
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~-----------~~~I~~~~~dG~~~~~l~~~~l---- 539 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI---- 539 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS-----------SCCEEBCCSSSCCCCEESCSSC----
T ss_pred CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC-----------CCeEEEEeCCCCCeeEEEeCCC----
Confidence 45778888763 34443322 234788999988888774321 1368888888765555432211
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~ 295 (595)
..+..+.|.|++. .|||... ....|++++. +|...+.+.
T Consensus 540 --------~~PnGlavd~~~~-~LY~aD~-----------~~~~I~~~d~---dG~~~~~~~ 578 (699)
T 1n7d_A 540 --------QWPNGITLDLLSG-RLYWVDS-----------KLHSISSIDV---NGGNRKTIL 578 (699)
T ss_dssp --------SSCCCEEECTTTC-CEEEEET-----------TTTEEEEECS---SSSCCEEEC
T ss_pred --------CCccEEEEeccCC-EEEEEec-----------CCCeEEEEcc---CCCceEEEE
Confidence 1134688888875 3877631 1245677675 544444443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.98 E-value=0.19 Score=49.04 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=109.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~ 109 (595)
......|.+.+++|+|+-. ....|++++++++.. ..+...-. ....+++.+.+..|+++-.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~---------~~~~I~r~~~~g~~~~~~~~~~~l~-----~p~glavd~~~g~ly~~d~--- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLL-----SPDGLACDWLGEKLYWTDS--- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEEET---------TTTEEEEEETTSSSCCCEEEEECCS-----CCCEEEEETTTTEEEEEET---
T ss_pred ccEEEEEEeCCCEEEEEEC---------CCCcEEEEEccCCCceEEEEcCCCC-----CccEEEEEcCCCeEEEEEC---
Confidence 3557789998888877632 346799999887642 22211111 2345677777777777511
Q ss_pred CCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCC--CeeeeeEECCCC
Q 007620 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQ 186 (595)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~--~~~~~~~~SpDg 186 (595)
....|.+++++|. .+.+... .....+++.|.+
T Consensus 99 ---------------------------------------------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 99 ---------------------------------------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp ---------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred ---------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Confidence 1245677777763 3333222 234578899988
Q ss_pred CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCC
Q 007620 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (595)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (595)
.+|+++.... ...|++++++|...+.+..... ..+..+.+++++. .|||...
T Consensus 134 g~ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~l------------~~Pnglavd~~~~-~lY~aD~---- 185 (318)
T 3sov_A 134 GFMYWTDWGE-----------VPKIERAGMDGSSRFIIINSEI------------YWPNGLTLDYEEQ-KLYWADA---- 185 (318)
T ss_dssp TEEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------SCEEEEEEETTTT-EEEEEET----
T ss_pred CEEEEEecCC-----------CCEEEEEEcCCCCeEEEEECCC------------CCccEEEEeccCC-EEEEEEC----
Confidence 8888875321 2378999998766555532211 0123578888766 4887631
Q ss_pred CcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
..+.|+.++. +|...+.+.... .....+.. ++..++...+ ....|++++..++
T Consensus 186 -------~~~~I~~~d~---dG~~~~~~~~~~~~~P~glav--~~~~lywtd~---~~~~V~~~~~~~G 239 (318)
T 3sov_A 186 -------KLNFIHKSNL---DGTNRQAVVKGSLPHPFALTL--FEDILYWTDW---STHSILACNKYTG 239 (318)
T ss_dssp -------TTTEEEEEET---TSCSCEEEECSCCSCEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred -------CCCEEEEEcC---CCCceEEEecCCCCCceEEEE--eCCEEEEEec---CCCeEEEEECCCC
Confidence 2346676675 554444443211 11112222 2222332222 3347888887553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.35 Score=47.60 Aligned_cols=143 Identities=10% Similarity=0.021 Sum_probs=74.0
Q ss_pred CCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc--cccccceEEec
Q 007620 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL--NAVFGSFVWVN 96 (595)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~--~~~~~~~~Wsp 96 (595)
|+.+.+.++. .......++|||+. ++...+.. .+...||.++ +|+...+........ -..+..+.+++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~-~v~~~~~~-----~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRL-FLSLHQFY-----QPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDG 76 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCE-EEEECGGG-----CCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECS
T ss_pred ceeEEEEEcC--CCcceEEECCCCCE-EEEeCCCC-----CCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcC
Confidence 4556666544 35778899999974 33322211 1125789888 565554321110000 01234678888
Q ss_pred CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCC-
Q 007620 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT- 173 (595)
Q Consensus 97 dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~- 173 (595)
+|+ |+++-. +. .. . ...+|+++|+ +|+ .+.+.-
T Consensus 77 ~g~-L~v~D~-----------------------g~----~~-----~-----------~~~~i~~~d~~tg~~~~~~~~~ 112 (343)
T 2qe8_A 77 NGI-VWMLDN-----------------------GN----QS-----K-----------SVPKLVAWDTLNNQLSRVIYLP 112 (343)
T ss_dssp SSE-EEEEEC-----------------------HH----HH-----T-----------SCCEEEEEETTTTEEEEEEECC
T ss_pred CCc-EEEEcC-----------------------CC----Cc-----C-----------CCCeEEEEECCCCeEEEEEECC
Confidence 887 444310 10 00 0 0245777777 455 333321
Q ss_pred -----C-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 174 -----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 174 -----~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
. .....++++|++..++++..... ....|+++|+.+++...+
T Consensus 113 ~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---------~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 113 PPITLSNSFVNDLAVDLIHNFVYISDPAPD---------DKAALIRVDLQTGLAARV 160 (343)
T ss_dssp TTTSCTTCCCCEEEEETTTTEEEEEECCSG---------GGCEEEEEETTTCCEEEE
T ss_pred hhhcccccccceEEEecCCCEEEEEcCccC---------CCCeEEEEECCCCCEEEE
Confidence 1 13357889988777777643100 124788999886655443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.13 Score=50.63 Aligned_cols=65 Identities=12% Similarity=0.001 Sum_probs=34.2
Q ss_pred cceEEEEcC-CCC-eeecCCCC----eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE
Q 007620 156 TAQLVLGSL-DGT-AKDFGTPA----VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (595)
Q Consensus 156 ~~~l~~~d~-~g~-~~~lt~~~----~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 221 (595)
...|.+.|+ +|+ .+.|.... .....+|||||+.++....... ...+.-......+.+||..+++.
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cceeeccCCCcEEEEEECCCCEE
Confidence 356777888 675 45554221 2235689999998876543211 00011112245677888887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0042 Score=64.09 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=69.7
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC-----ce-Ee---cccCCCccccccccceEEecC-CcEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-----EA-KP---LFESPDICLNAVFGSFVWVNN-STLL 101 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-----~~-~~---lt~~~~~~~~~~~~~~~Wspd-g~~l 101 (595)
.+....|||||++||.....+ .....|.++|+.++ +. +. +..... ....+..+.|+|+ +..|
T Consensus 94 ~v~~l~~spdg~~lav~~~sg------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--AGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS--GGGSEEEEEECSSCTTEE
T ss_pred cccEEEEcCCCCEEEEEEecc------CCCceEEEEEccccccCCcCCcceeeeeeccCC--CCCceEEEEECCCCCCEE
Confidence 478899999999998743111 23456777787644 11 11 111110 0124678999998 5666
Q ss_pred EEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe-e-ecCCCCeee
Q 007620 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-K-DFGTPAVYT 178 (595)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~-~-~lt~~~~~~ 178 (595)
+....+ ..|.++|+ ++.. . .........
T Consensus 166 as~s~D-------------------------------------------------g~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 166 AVCLAD-------------------------------------------------GSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEETT-------------------------------------------------SCEEEEEESSSEEEEEEECGGGCEE
T ss_pred EEEECC-------------------------------------------------CeEEEEEcCCCcceeeccCCCCcee
Confidence 554211 12334444 2211 1 111123456
Q ss_pred eeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 179 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
.++|||||++|+....+ ..+.+||+.+...+.+
T Consensus 197 ~v~wspdg~~lasgs~d-------------g~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 197 SVCWSPKGKQLAVGKQN-------------GTVVQYLPTLQEKKVI 229 (434)
T ss_dssp EEEECTTSSCEEEEETT-------------SCEEEECTTCCEEEEE
T ss_pred EEEEcCCCCEEEEEcCC-------------CcEEEEccCCcccccc
Confidence 89999999999887642 3688999885444443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.36 Score=46.97 Aligned_cols=168 Identities=8% Similarity=0.011 Sum_probs=89.5
Q ss_pred cceEEEEcCCC-CeeecC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC----ceEEEeccCCC
Q 007620 156 TAQLVLGSLDG-TAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG----KLVRELCDLPP 229 (595)
Q Consensus 156 ~~~l~~~d~~g-~~~~lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~l~~~~~ 229 (595)
...|.++++++ +...+. .......+.|++++..|+++... ...|+++++++ .....+.....
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~------------~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECSSC
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC------------CCcEEEEECCCCCCCcccEEEEeCCC
Confidence 45788899855 444432 22344688999998899888643 23788998876 23233221100
Q ss_pred CccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-CccccceeecC
Q 007620 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCD 308 (595)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-~~~~~~~~wsp 308 (595)
..+..+...+.+. .||+... ..+.+.+++. +|...+.+... ......+...|
T Consensus 77 ------------~~p~glavd~~~~-~ly~~d~-----------~~~~I~~~~~---~g~~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 77 ------------QAPDGLAVDWIHS-NIYWTDS-----------VLGTVSVADT---KGVKRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp ------------SCCCEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSSSEEEEEECTTCCEEEEEEET
T ss_pred ------------CCcCEEEEeecCC-eEEEEEC-----------CCCEEEEEeC---CCCceEEEEECCCCCcceEEeCC
Confidence 0122344444333 4776521 1235666665 44333444332 22345567777
Q ss_pred CCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 309 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 309 Dg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
++..++...+. ....|+++++++. ..+.+...... .|. .+.++++++.||+...
T Consensus 130 ~~g~ly~~d~~--~~~~I~~~~~dG~--~~~~~~~~~~~----~P~--gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 130 VHGFMYWTDWG--TPAKIKKGGLNGV--DIYSLVTENIQ----WPN--GITLDLLSGRLYWVDS 183 (316)
T ss_dssp TTTEEEEEECS--SSCEEEEEETTSC--CEEEEECSSCS----CEE--EEEEETTTTEEEEEET
T ss_pred CCCEEEEEccC--CCCeEEEEcCCCC--CeEEEEECCCC----Cce--EEEEeccCCEEEEEEC
Confidence 65544443322 1248999999873 33444322211 111 1778888888888753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.027 Score=58.00 Aligned_cols=116 Identities=9% Similarity=0.091 Sum_probs=62.7
Q ss_pred eeeeeEECCC-CCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..++|+|+ ++.|+....+ ..+.+||+.++...... .. .......+.|+|+|+
T Consensus 151 ~V~~v~~~p~~~~~las~s~D-------------g~v~iwD~~~~~~~~~~-~~-----------~~~~v~~v~wspdg~ 205 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQVTETVKVCAT-LP-----------STVAVTSVCWSPKGK 205 (434)
T ss_dssp SEEEEEECSSCTTEEEEEETT-------------SCEEEEEESSSEEEEEE-EC-----------GGGCEEEEEECTTSS
T ss_pred ceEEEEECCCCCCEEEEEECC-------------CeEEEEEcCCCcceeec-cC-----------CCCceeEEEEcCCCC
Confidence 4568999998 5666555432 36889998866432111 00 011234689999987
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecccc-------CccccceeecCCCcEEEEEEeec---ccc
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKL-------DLRFRSVSWCDDSLALVNETWYK---TSQ 323 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~-------~~~~~~~~wspDg~~l~~~~~~~---~~~ 323 (595)
. |+.. .....+.+++. .+ +.. .+... ......+.|++++..++.-...+ ...
T Consensus 206 ~-lasg------------s~dg~v~iwd~---~~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 206 Q-LAVG------------KQNGTVVQYLP---TL-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp C-EEEE------------ETTSCEEEECT---TC-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred E-EEEE------------cCCCcEEEEcc---CC-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 4 4332 11235667775 32 322 22111 12456789999887654322221 122
Q ss_pred eEEEEEeCCC
Q 007620 324 TRTWLVCPGS 333 (595)
Q Consensus 324 ~~L~~~d~~~ 333 (595)
..+.++++..
T Consensus 269 ~~v~i~~l~~ 278 (434)
T 2oit_A 269 PDVVMALLPK 278 (434)
T ss_dssp CEEEEEECCC
T ss_pred CceEEEEecc
Confidence 3466667665
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.19 Score=51.48 Aligned_cols=55 Identities=7% Similarity=-0.107 Sum_probs=32.1
Q ss_pred ceEEeccCCCCCCCCc-eecc-----ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 276 DIIYTQPAEPAEGEKP-EILH-----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 276 ~~~~~~d~~~~~g~~~-~~l~-----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
..+.+++. ..++. ..+. .....+..+.|+|++..++...........|+++|.+.
T Consensus 382 g~v~iwd~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 382 GTVKLWDL---KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEET---TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CeEEEEEC---CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 46777776 32333 2331 22345677899999987776542222234677788764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.75 E-value=0.47 Score=46.25 Aligned_cols=168 Identities=10% Similarity=-0.004 Sum_probs=89.4
Q ss_pred ecceEEEEcCCCC---eeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE--EEeccCC
Q 007620 155 TTAQLVLGSLDGT---AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLP 228 (595)
Q Consensus 155 ~~~~l~~~d~~g~---~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--~~l~~~~ 228 (595)
....|.++++++. ...+.. -.....+.|.+.+..|+++... ...|++++++++.. ..+...
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------------~~~I~r~~~~g~~~~~~~~~~~- 77 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------------EEAIKRTEFNKTESVQNVVVSG- 77 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------------TTEEEEEETTSSSCCCEEEEEC-
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------------CCcEEEEEccCCCceEEEEcCC-
Confidence 3567888999653 222211 1233478899988888888543 23788888886632 222111
Q ss_pred CCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-Cccccceeec
Q 007620 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWC 307 (595)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-~~~~~~~~ws 307 (595)
. ..+..+...+.+. .||+... ....+.+++. +|...+.+... ......+...
T Consensus 78 l------------~~p~glavd~~~g-~ly~~d~-----------~~~~I~~~~~---dG~~~~~l~~~~~~~P~giavd 130 (318)
T 3sov_A 78 L------------LSPDGLACDWLGE-KLYWTDS-----------ETNRIEVSNL---DGSLRKVLFWQELDQPRAIALD 130 (318)
T ss_dssp C------------SCCCEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEEE
T ss_pred C------------CCccEEEEEcCCC-eEEEEEC-----------CCCEEEEEEC---CCCcEEEEEeCCCCCccEEEEe
Confidence 0 0122344443333 3766521 1235666665 54333444322 2234456667
Q ss_pred CCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 308 pDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
|.+..++...+. ...+|+++++++. ..+.+....+. .|. .++++++++.||+...
T Consensus 131 p~~g~ly~td~~--~~~~I~r~~~dG~--~~~~~~~~~l~----~Pn--glavd~~~~~lY~aD~ 185 (318)
T 3sov_A 131 PSSGFMYWTDWG--EVPKIERAGMDGS--SRFIIINSEIY----WPN--GLTLDYEEQKLYWADA 185 (318)
T ss_dssp GGGTEEEEEECS--SSCEEEEEETTSC--SCEEEECSSCS----CEE--EEEEETTTTEEEEEET
T ss_pred CCCCEEEEEecC--CCCEEEEEEcCCC--CeEEEEECCCC----Ccc--EEEEeccCCEEEEEEC
Confidence 764444443332 2358999999873 44545432221 111 1788888888888753
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0038 Score=60.77 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=32.8
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
+.+.++|++.+| ++..+|++|++|+++++| |+||+.|+
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~~~~~~~--Pvlv~lHG 77 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGYDPNKKY--NIFYLMHG 77 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCC--EEEEEECC
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCCCCCCCC--CEEEEECC
Confidence 678899999887 999999999999876656 99998775
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=65.74 Aligned_cols=71 Identities=24% Similarity=0.390 Sum_probs=50.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+++++.||.+++++++.|.+ .+.+ +.|+||++|+. ++.. ..+.....+.|+++||.|+.
T Consensus 67 ~~~~~~~~~~~g~~~~~~~~~p~~-~~~~--~~p~vv~~hG~------------~~~~--~~~~~~~~~~l~~~G~~v~~ 129 (367)
T 2hdw_A 67 EHRKVTFANRYGITLAADLYLPKN-RGGD--RLPAIVIGGPF------------GAVK--EQSSGLYAQTMAERGFVTLA 129 (367)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESS-CCSS--CEEEEEEECCT------------TCCT--TSHHHHHHHHHHHTTCEEEE
T ss_pred eeEEEEEecCCCCEEEEEEEeCCC-CCCC--CCCEEEEECCC------------CCcc--hhhHHHHHHHHHHCCCEEEE
Confidence 778999999999999999999987 4333 34999998742 1110 00000135789999999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++.+..|.
T Consensus 130 -~d~~g~g~ 137 (367)
T 2hdw_A 130 -FDPSYTGE 137 (367)
T ss_dssp -ECCTTSTT
T ss_pred -ECCCCcCC
Confidence 77776553
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=66.63 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=65.9
Q ss_pred EEEEEecCCCcceEEEEeCCCC--ceeeEecCCCCCCCcCCCceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEE
Q 007620 441 ILTSKESKTEITQYHILSWPLK--KSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW 518 (595)
Q Consensus 441 l~~~~~s~~~p~~l~~~d~~~~--~~~~Lt~~~~~~~~~~~~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~ 518 (595)
+++..++..+|.++|+.+.... ..++++..+.. .+......|.++++. ||.+|+|++++|.+. + +.|+||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-dg~~i~~~l~~p~~~---~--~~P~vl~ 157 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVELYQKA-APLLSPPAERHELVV-DGIPMPVYVRIPEGP---G--PHPAVIM 157 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHHHHH-GGGSSSCEEEEEEEE-TTEEEEEEEECCSSS---C--CEEEEEE
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHHHHHH-HhhcCCCeEEEEEEe-CCEEEEEEEEcCCCC---C--CCCEEEE
Confidence 4455556677888777653210 12334444321 122223788899987 999999999999874 2 3399998
Q ss_pred eccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeec
Q 007620 519 AYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 519 ~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
+|+. ..... ..+...+.|+++||+|+. ++.+..|.
T Consensus 158 ~hG~--------------~~~~~-~~~~~~~~l~~~G~~v~~-~d~rG~G~ 192 (386)
T 2jbw_A 158 LGGL--------------ESTKE-ESFQMENLVLDRGMATAT-FDGPGQGE 192 (386)
T ss_dssp ECCS--------------SCCTT-TTHHHHHHHHHTTCEEEE-ECCTTSGG
T ss_pred eCCC--------------CccHH-HHHHHHHHHHhCCCEEEE-ECCCCCCC
Confidence 6532 11111 112236899999999999 77776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.76 Score=49.48 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=120.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|...+|. +.....+.-+..........|+|++.+|+++-. ....|++++++++....+......
T Consensus 16 ~I~~i~l~----~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~---------~~~~I~r~~~~g~~~~~v~~~g~~-- 80 (628)
T 4a0p_A 16 DIRRISLE----TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI---------SLKTISRAFMNGSALEHVVEFGLD-- 80 (628)
T ss_dssp EEEEEESS----CTTCEEECCCCSCSCEEEEEEETTTTEEEEEET---------TTTEEEEEETTSCSCEEEECSSCS--
T ss_pred cEEEEECC----CCCcceEEEcCCCCceEEEEEECCCCEEEEEEC---------CCCeEEEEECCCCCcEEEEeCCCC--
Confidence 45556665 333332221222224667889999888877642 346899999987765554332110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 165 (595)
....++..+.++.|+++-. ...+|.+++++
T Consensus 81 --~P~GlAvD~~~~~LY~tD~------------------------------------------------~~~~I~v~~~d 110 (628)
T 4a0p_A 81 --YPEGMAVDWLGKNLYWADT------------------------------------------------GTNRIEVSKLD 110 (628)
T ss_dssp --CCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEEEETT
T ss_pred --CcceEEEEeCCCEEEEEEC------------------------------------------------CCCEEEEEecC
Confidence 2345666667777777511 12467778887
Q ss_pred CC-eeecCCCC--eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 166 GT-AKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 166 g~-~~~lt~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
|. .+.|.... ....+++.|....|+++.... ...|++++++|...+.+... . .
T Consensus 111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~-----------~~~I~r~~~dG~~~~~l~~~-~------------~ 166 (628)
T 4a0p_A 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-----------KPKIDRAAMDGSERTTLVPN-V------------G 166 (628)
T ss_dssp STTCEEEECSSCCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEEEECS-C------------S
T ss_pred CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC-----------CCEEEEEeCCCCceEEEECC-C------------C
Confidence 74 33333222 345788999877888875321 23789999998776665431 0 0
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
.+..+...++++ .|||... ..+.+..++. +|+..+.+...-.....++.. +..++...+ .
T Consensus 167 ~P~GlalD~~~~-~LY~aD~-----------~~~~I~~~d~---dG~~~~v~~~~l~~P~glav~--~~~ly~tD~---~ 226 (628)
T 4a0p_A 167 RANGLTIDYAKR-RLYWTDL-----------DTNLIESSNM---LGLNREVIADDLPHPFGLTQY--QDYIYWTDW---S 226 (628)
T ss_dssp SEEEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCSCEEEEECCSCEEEEEEE--TTEEEEEET---T
T ss_pred CcceEEEccccC-EEEEEEC-----------CCCEEEEEcC---CCCceEEeeccCCCceEEEEE--CCEEEEecC---C
Confidence 122466677665 4887632 2345666675 553443232211111122222 223333322 2
Q ss_pred ceEEEEEeCCCC
Q 007620 323 QTRTWLVCPGSK 334 (595)
Q Consensus 323 ~~~L~~~d~~~~ 334 (595)
...|+++|..++
T Consensus 227 ~~~I~~~dk~tg 238 (628)
T 4a0p_A 227 RRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTTC
T ss_pred CCEEEEEECCCC
Confidence 347888887654
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0029 Score=62.93 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=49.3
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
...+.++|++.||.+|+++++.|.+ . + +.|+||++|+. +... ..+.....++++||+|+
T Consensus 80 ~~~~~~~~~~~~g~~l~~~~~~P~~-~--~--~~p~vv~~HG~--------------g~~~--~~~~~~~~~~~~G~~v~ 138 (346)
T 3fcy_A 80 AECYDLYFTGVRGARIHAKYIKPKT-E--G--KHPALIRFHGY--------------SSNS--GDWNDKLNYVAAGFTVV 138 (346)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEESC-S--S--CEEEEEEECCT--------------TCCS--CCSGGGHHHHTTTCEEE
T ss_pred eEEEEEEEEcCCCCEEEEEEEecCC-C--C--CcCEEEEECCC--------------CCCC--CChhhhhHHHhCCcEEE
Confidence 3788899999999999999999986 2 2 34999998743 1111 11223357889999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++.+..|.
T Consensus 139 ~-~D~rG~g~ 147 (346)
T 3fcy_A 139 A-MDVRGQGG 147 (346)
T ss_dssp E-ECCTTSSS
T ss_pred E-EcCCCCCC
Confidence 9 77776553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.49 Score=44.39 Aligned_cols=65 Identities=9% Similarity=0.215 Sum_probs=42.4
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
+++|.++.. ..+...|+||++.|+.+.. ....|+.+|+.+...+++. .... .....+++.++++.
T Consensus 19 ~~~l~g~~~--~lSGla~~~~~~~L~aV~d---------~~~~I~~ld~~g~v~~~i~-l~g~---~D~EGIa~~~~g~~ 83 (255)
T 3qqz_A 19 GKEIAGITN--NISSLTWSAQSNTLFSTIN---------KPAAIVEMTTNGDLIRTIP-LDFV---KDLETIEYIGDNQF 83 (255)
T ss_dssp EEECTTCCS--CEEEEEEETTTTEEEEEEE---------TTEEEEEEETTCCEEEEEE-CSSC---SSEEEEEECSTTEE
T ss_pred ceECCCccc--CcceeEEeCCCCEEEEEEC---------CCCeEEEEeCCCCEEEEEe-cCCC---CChHHeEEeCCCEE
Confidence 356654443 4889999999998877764 3578999999833344442 1110 13457788888863
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=61.89 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=47.5
Q ss_pred ceEEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~-~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++.+ .+|.+++.++++|+++++++++ |+||++|+.. +....|... ....++++.+||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--P~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 79 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESNKV--PVLYWLSGLT-----------CTDENFMQK-AGAFKKAAELGIAIV 79 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTBCE--EEEEEECCTT-----------CCSHHHHHH-SCCHHHHHHHTCEEE
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCCCc--CEEEEeCCCC-----------CChhhhhcc-hhHHHHHhhCCeEEE
Confidence 456667765 5899999999999998866655 9999987531 001111111 112468888899999
Q ss_pred eCCCCce
Q 007620 560 AGPSIPI 566 (595)
Q Consensus 560 ~~~~~~~ 566 (595)
. |+.+.
T Consensus 80 ~-~d~~~ 85 (280)
T 3ls2_A 80 A-PDTSP 85 (280)
T ss_dssp E-CCSSC
T ss_pred E-eCCcc
Confidence 9 77553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.59 Score=44.26 Aligned_cols=118 Identities=13% Similarity=0.198 Sum_probs=61.6
Q ss_pred eEEEEcCCCCe-eecCC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccC
Q 007620 158 QLVLGSLDGTA-KDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 158 ~l~~~d~~g~~-~~lt~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~ 233 (595)
.|++++.+|+. ..+.. ......++++|||+ |+++... ...|+++|.++.....+..... .
T Consensus 143 ~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~g~---~ 206 (286)
T 1q7f_A 143 RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGEGI---T 206 (286)
T ss_dssp EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCTTT---S
T ss_pred EEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC------------CCEEEEEcCCCCEEEEEccCCc---c
Confidence 45566665532 22321 12345789999987 5555432 2378899988776665532100 0
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcc-eEEeccCCCCCCCCceeccccCc--cccceeecCCC
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD-IIYTQPAEPAEGEKPEILHKLDL--RFRSVSWCDDS 310 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~-~~~~~d~~~~~g~~~~~l~~~~~--~~~~~~wspDg 310 (595)
..+..+.++++|. |+.... ... .+.+++. ++.....+..... ....+.++|||
T Consensus 207 --------~~p~~i~~d~~G~--l~v~~~-----------~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 207 --------NYPIGVGINSNGE--ILIADN-----------HNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp --------CSEEEEEECTTCC--EEEEEC-----------SSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred --------CCCcEEEECCCCC--EEEEeC-----------CCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECCCC
Confidence 1123467778875 544311 122 5666674 4322333322111 23467788888
Q ss_pred cEEEE
Q 007620 311 LALVN 315 (595)
Q Consensus 311 ~~l~~ 315 (595)
..++.
T Consensus 263 ~l~vs 267 (286)
T 1q7f_A 263 SVVLA 267 (286)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 75554
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0044 Score=65.83 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
..+.|.++.+||.+|.++|++|.+ . + |.|+||..||
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~-~--~--~~P~vl~~~p 75 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNK-D--G--KFPVVMSADT 75 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSS-S--S--CEEEEEEEES
T ss_pred EEEEEEEECCCCcEEEEEEEecCC-C--C--CCCEEEEecC
Confidence 577899999999999999999986 1 3 4499998764
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0035 Score=67.83 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=44.0
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCC--CCchh-HHHhccCeE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSS-LIFLARRFA 557 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~--~~~~~-q~la~~GY~ 557 (595)
..+.++++.+||.+|++++++|.+. +++ |+||++||- +.. ....+.....+ ..... |+||++||+
T Consensus 24 ~~~~v~i~~~DG~~L~~~~~~P~~~---~~~--P~vl~~hgy----g~~---~~~~~~~~~~~~~~~~~~~~~la~~Gy~ 91 (615)
T 1mpx_A 24 IKREVMIPMRDGVKLHTVIVLPKGA---KNA--PIVLTRTPY----DAS---GRTERLASPHMKDLLSAGDDVFVEGGYI 91 (615)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC---CSE--EEEEEEESS----CHH---HHTCSSCCSSHHHHSCGGGHHHHHTTCE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCCC---CCe--eEEEEEcCC----CCc---cccccccccccccccchhHHHHHhCCeE
Confidence 6788999999999999999999864 334 999987642 000 00001110000 01122 899999999
Q ss_pred EEe
Q 007620 558 VLA 560 (595)
Q Consensus 558 Vl~ 560 (595)
||.
T Consensus 92 Vv~ 94 (615)
T 1mpx_A 92 RVF 94 (615)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.66 Score=44.07 Aligned_cols=181 Identities=13% Similarity=0.020 Sum_probs=95.9
Q ss_pred CceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccc
Q 007620 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (595)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 139 (595)
....|+++|.++|+...-+..... .......++|||+.|+ ...
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilv-s~~--------------------------------- 55 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILF-SYS--------------------------------- 55 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEE-ECB---------------------------------
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEE-eCC---------------------------------
Confidence 347788889878875433322210 1245778899998666 310
Q ss_pred ccccCcCCccceEEeecceEEEEcCCCC-eeecCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcC
Q 007620 140 NLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (595)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (595)
..++.+|.+|+ ...+..+ .....+.++|||+.|+..... ...++.+|.
T Consensus 56 -----------------~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~vd~ 106 (276)
T 3no2_A 56 -----------------KGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILEVNM 106 (276)
T ss_dssp -----------------SEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEEECT
T ss_pred -----------------CCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEEEeC
Confidence 12444444442 2223222 234577899999987765431 136788888
Q ss_pred CCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc
Q 007620 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (595)
Q Consensus 217 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~ 296 (595)
+|+....+.-..... .+ ....+.....++|. +++.. .....++.+|. +| +..--..
T Consensus 107 ~Gk~l~~~~~~~~~~-~~------~~~~~~v~~~~~G~--~lv~~-----------~~~~~v~~~d~---~G-~~~w~~~ 162 (276)
T 3no2_A 107 KGEVLSKTEFETGIE-RP------HAQFRQINKNKKGN--YLVPL-----------FATSEVREIAP---NG-QLLNSVK 162 (276)
T ss_dssp TSCEEEEEEECCSCS-SG------GGSCSCCEECTTSC--EEEEE-----------TTTTEEEEECT---TS-CEEEEEE
T ss_pred CCCEEEEEeccCCCC-cc------cccccCceECCCCC--EEEEe-----------cCCCEEEEECC---CC-CEEEEEE
Confidence 777665543111000 00 00122345677776 32221 12345777785 54 4332222
Q ss_pred cCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
...........++|..++... ...+|+.+|++++
T Consensus 163 ~~~~~~~~~~~~~g~~~v~~~----~~~~v~~~d~~tG 196 (276)
T 3no2_A 163 LSGTPFSSAFLDNGDCLVACG----DAHCFVQLNLESN 196 (276)
T ss_dssp CSSCCCEEEECTTSCEEEECB----TTSEEEEECTTTC
T ss_pred CCCCccceeEcCCCCEEEEeC----CCCeEEEEeCcCC
Confidence 222333455678888776543 2237999999863
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0024 Score=69.43 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=43.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC----Cchh-HHHhccC
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT----PTSS-LIFLARR 555 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~----~~~~-q~la~~G 555 (595)
..|.++++.+||.+|+++|++|.+. +++ |+||+.||- .... +....+.... .... |+||++|
T Consensus 36 ~~~~v~i~~~DG~~L~~~l~~P~~~---~~~--PvIl~~hpy--g~~~------~~~~~~~~~~~~~~~~~~~~~la~~G 102 (652)
T 2b9v_A 36 IKREVMVPMRDGVKLYTVIVIPKNA---RNA--PILLTRTPY--NAKG------RANRVPNALTMREVLPQGDDVFVEGG 102 (652)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTC---CSE--EEEEEEESS--CHHH------HTCSSTTCSSHHHHSCGGGHHHHHTT
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC---CCc--cEEEEECCC--CCCc------ccccccccccccccccchHHHHHhCC
Confidence 5688999999999999999999864 234 999987641 1000 0000111100 1123 8999999
Q ss_pred eEEEe
Q 007620 556 FAVLA 560 (595)
Q Consensus 556 Y~Vl~ 560 (595)
|+||.
T Consensus 103 yaVv~ 107 (652)
T 2b9v_A 103 YIRVF 107 (652)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99998
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.59 Score=44.11 Aligned_cols=203 Identities=7% Similarity=-0.041 Sum_probs=99.8
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
...+.|+||| +|++++.... ...|.++|+.+++...-...+. .........+++ .
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~~----------~s~v~~iD~~tg~v~~~i~l~~-------------~~fgeGi~~~g~-~ 77 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLYG----------RSSVRQVALQTGKVENIHKMDD-------------SYFGEGLTLLNE-K 77 (266)
T ss_dssp EEEEEECSTT-EEEEEECSTT----------TCEEEEEETTTCCEEEEEECCT-------------TCCEEEEEEETT-E
T ss_pred cccEEEeCCC-eEEEECCCCC----------CCEEEEEECCCCCEEEEEecCC-------------CcceEEEEEeCC-E
Confidence 4578999995 6666643211 3479999998766543221110 011112223343 4
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~ 335 (595)
||.... ..+.++++|. .+ .+.. .+.-. .......++||..++... +...|+.+|+++.+
T Consensus 78 lyv~t~-----------~~~~v~viD~--~t-~~v~~~i~~g--~~~g~glt~Dg~~l~vs~----gs~~l~viD~~t~~ 137 (266)
T 2iwa_A 78 LYQVVW-----------LKNIGFIYDR--RT-LSNIKNFTHQ--MKDGWGLATDGKILYGSD----GTSILYEIDPHTFK 137 (266)
T ss_dssp EEEEET-----------TCSEEEEEET--TT-TEEEEEEECC--SSSCCEEEECSSSEEEEC----SSSEEEEECTTTCC
T ss_pred EEEEEe-----------cCCEEEEEEC--CC-CcEEEEEECC--CCCeEEEEECCCEEEEEC----CCCeEEEEECCCCc
Confidence 665522 2346777785 22 2222 22211 122344677887655432 23489999998842
Q ss_pred CCcEEE-eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecC
Q 007620 336 VAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (595)
Q Consensus 336 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (595)
..+.+ ....-.. +..+ ..+.|. +| .+|+.... .. .+.++|++++++...+...
T Consensus 138 -v~~~I~Vg~~~~p-~~~~--nele~~-dg-~lyvn~~~----~~----------------~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 138 -LIKKHNVKYNGHR-VIRL--NELEYI-NG-EVWANIWQ----TD----------------CIARISAKDGTLLGWILLP 191 (266)
T ss_dssp -EEEEEECEETTEE-CCCE--EEEEEE-TT-EEEEEETT----SS----------------EEEEEETTTCCEEEEEECH
T ss_pred -EEEEEEECCCCcc-cccc--eeEEEE-CC-EEEEecCC----CC----------------eEEEEECCCCcEEEEEECC
Confidence 22333 1111000 0000 014455 55 45554321 11 2446899999876554321
Q ss_pred cc---------ccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 415 RE---------KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 415 ~~---------~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
.- .....+. +..+++++++++++... -+.+|.+++.
T Consensus 192 g~~~~~~~~~~~~~~v~n-------GIa~~~~~~~lfVTgk~---~~~v~~i~l~ 236 (266)
T 2iwa_A 192 NLRKKLIDEGFRDIDVLN-------GIAWDQENKRIFVTGKL---WPKLFEIKLH 236 (266)
T ss_dssp HHHHHHHHTTCTTCCCEE-------EEEEETTTTEEEEEETT---CSEEEEEEEE
T ss_pred CcccccccccccccCceE-------EEEEcCCCCEEEEECCC---CCeEEEEEEe
Confidence 00 0001122 24578888988887633 3567777754
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0061 Score=61.61 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=34.8
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
..+.++|++. ||.++++++++|.++++++++ |+||++|++
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~~~--Pvvv~lHG~ 183 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDRKY--PLVVFLHGA 183 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTSCE--EEEEEECCG
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCCCc--cEEEEECCC
Confidence 5778899999 999999999999998876655 999998864
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=61.74 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=47.9
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+++++.||.+|+++++.|.+ . + +.|+||++|+. ...+ ...+.....|+++||+|+.
T Consensus 55 ~~~~~~~~~~~g~~i~~~~~~P~~-~--~--~~p~vv~~HG~--------------~~~~-~~~~~~~~~l~~~g~~v~~ 114 (318)
T 1l7a_A 55 KVYRLTYKSFGNARITGWYAVPDK-E--G--PHPAIVKYHGY--------------NASY-DGEIHEMVNWALHGYATFG 114 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESS-C--S--CEEEEEEECCT--------------TCCS-GGGHHHHHHHHHTTCEEEE
T ss_pred EEEEEEEEccCCCEEEEEEEeeCC-C--C--CccEEEEEcCC--------------CCCC-CCCcccccchhhCCcEEEE
Confidence 678899999999999999999986 2 2 34999998743 1110 0111223578899999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++.+..|.
T Consensus 115 -~d~rg~g~ 122 (318)
T 1l7a_A 115 -MLVRGQQR 122 (318)
T ss_dssp -ECCTTTSS
T ss_pred -ecCCCCCC
Confidence 77665553
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0026 Score=60.98 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=46.8
Q ss_pred ceEEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~-~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++.+ .+|.++..++++|+++++++++ |+||++|+.. +....|... ....++++.+||+|+
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--p~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv 81 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTGAKV--PVLYWLSGLT-----------CSDENFMQK-AGAQRLAAELGIAIV 81 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTTCCE--EEEEEECCTT-----------CCSSHHHHH-SCCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCCCCc--cEEEEecCCC-----------CChhHHhhc-ccHHHHHhhCCeEEE
Confidence 455566654 5899999999999998765545 9999987531 111112111 112468888899999
Q ss_pred eCCCCce
Q 007620 560 AGPSIPI 566 (595)
Q Consensus 560 ~~~~~~~ 566 (595)
. |+.+.
T Consensus 82 ~-pd~~~ 87 (280)
T 3i6y_A 82 A-PDTSP 87 (280)
T ss_dssp E-ECSSC
T ss_pred E-eCCcc
Confidence 9 66543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.88 Score=43.02 Aligned_cols=191 Identities=12% Similarity=0.076 Sum_probs=99.2
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.+....++|||+ |.+. . .....|++++.+ ++...+...... .....+.++++|+. ++...
T Consensus 16 ~~~~i~~d~~g~-l~v~-~--------~~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~l-~v~~~----- 75 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWIT-Q--------HKANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGEV-WFTEN----- 75 (299)
T ss_dssp CEEEEEECTTSC-EEEE-E--------TTTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSCE-EEEET-----
T ss_pred CccceEECCCCC-EEEE-e--------cCCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCCE-EEeCC-----
Confidence 567888999997 4343 2 224679999988 765554321110 13456778888874 33211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecC---CCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG---TPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt---~~~~~~~~~~SpDg~~ 188 (595)
....|++++.+|+.+.+. .......+.++|||+
T Consensus 76 -------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 76 -------------------------------------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp -------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSC-
T ss_pred -------------------------------------------CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCC-
Confidence 012355555555433332 122345788889885
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCc
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (595)
|+++... ...|+++|.+ ++...+.... . ......+.+.++|. +++..
T Consensus 112 l~v~~~~------------~~~i~~~d~~-g~~~~~~~~~-~----------~~~~~~i~~~~~g~--l~v~~------- 158 (299)
T 2z2n_A 112 IWFTEMN------------GNRIGRITDD-GKIREYELPN-K----------GSYPSFITLGSDNA--LWFTE------- 158 (299)
T ss_dssp EEEEETT------------TTEEEEECTT-CCEEEEECSS-T----------TCCEEEEEECTTSC--EEEEE-------
T ss_pred EEEEecC------------CceEEEECCC-CCEEEecCCC-C----------CCCCceEEEcCCCC--EEEEe-------
Confidence 5555422 2368888884 3333322100 0 01123455666764 54431
Q ss_pred ccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 269 ~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
.....++.++. + ++...+. ........+.++++|..++... ....|+++|+
T Consensus 159 ----~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~ 211 (299)
T 2z2n_A 159 ----NQNNAIGRITE---S-GDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT 211 (299)
T ss_dssp ----TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT
T ss_pred ----CCCCEEEEEcC---C-CcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC
Confidence 11235666663 3 3443321 1122344567788887555432 2237899998
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.13 E-value=1.4 Score=44.78 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=17.7
Q ss_pred ccccccCCEEEEEEecCCCcceEEEEeCC
Q 007620 432 EDINLNQLKILTSKESKTEITQYHILSWP 460 (595)
Q Consensus 432 ~~~s~d~~~l~~~~~s~~~p~~l~~~d~~ 460 (595)
..|++++..++....+......++++|..
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 35777766555544444446778888864
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.012 Score=53.25 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=48.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCC-CCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM-TPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~-~~~~~q~la~~GY~Vl 559 (595)
..|.+++++.|| +|+++++.|.+ . + +.|+||++|+.+.. ++.. ... .....+.|+++||.|+
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-~--~--~~~~vv~~HG~~~~---------~~~~--~~~~~~~~~~~l~~~g~~v~ 67 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-I--E--KSVTGIICHPHPLH---------GGTM--NNKVVTTLAKALDELGLKTV 67 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-C--C--CSEEEEEECSCGGG---------TCCT--TCHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-C--C--CCCEEEEEcCCCCC---------CCcc--CCchHHHHHHHHHHCCCEEE
Confidence 577899999999 99999999975 1 1 33999997752110 1110 000 0123478999999999
Q ss_pred eCCCCceeecC
Q 007620 560 AGPSIPIIGEG 570 (595)
Q Consensus 560 ~~~~~~~~~~~ 570 (595)
. ++.+..|..
T Consensus 68 ~-~d~~g~g~s 77 (208)
T 3trd_A 68 R-FNFRGVGKS 77 (208)
T ss_dssp E-ECCTTSTTC
T ss_pred E-EecCCCCCC
Confidence 9 888776653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.28 Score=48.37 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=37.3
Q ss_pred eeeEEEecCCCCCCCCc-eeeecCCCC-----CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecc
Q 007620 5 TGIGIHRLLPDDSLGPE-KEVHGYPDG-----AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~-~~lt~~~~~-----~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (595)
..|++.|+. +|+. +.+. ++.. ......+++|++..+ |++.... .....|+++++++|+..++.
T Consensus 93 ~~i~~~d~~----tg~~~~~~~-~~~~~~~~~~~~~~v~vd~~~g~~-yvtd~~~-----~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 93 PKLVAWDTL----NNQLSRVIY-LPPPITLSNSFVNDLAVDLIHNFV-YISDPAP-----DDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp CEEEEEETT----TTEEEEEEE-CCTTTSCTTCCCCEEEEETTTTEE-EEEECCS-----GGGCEEEEEETTTCCEEEEC
T ss_pred CeEEEEECC----CCeEEEEEE-CChhhcccccccceEEEecCCCEE-EEEcCcc-----CCCCeEEEEECCCCCEEEEe
Confidence 346666776 6663 3333 3321 134678999987655 4443210 13578999999988866653
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0097 Score=60.52 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=48.7
Q ss_pred ceEEEEEECCC--C--cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcc--cCCCCchhHHHhcc
Q 007620 481 QKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF--SGMTPTSSLIFLAR 554 (595)
Q Consensus 481 ~~e~v~~~~~D--G--~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~--~~~~~~~~q~la~~ 554 (595)
....+.|++.| | ..+.|+|++|.+..+.+ +.|+||++|+...+.. . ..+..+ ...+....+.|+++
T Consensus 45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~--~~P~vv~~HG~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~~ 116 (397)
T 3h2g_A 45 RVAEFTYATIGVEGEPATASGVLLIPGGERCSG--PYPLLGWGHPTEALRA----Q--EQAKEIRDAKGDDPLVTRLASQ 116 (397)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECTTCCS--CEEEEEEECCCCCBTT----C--CHHHHHHHTTTCSHHHHTTGGG
T ss_pred EEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCC--CCcEEEEeCCCcCCCC----c--ccccccccccchHHHHHHHHHC
Confidence 55666776554 5 46999999999865433 4499999875321100 0 000000 01122346789999
Q ss_pred CeEEEeCCCCceeec
Q 007620 555 RFAVLAGPSIPIIGE 569 (595)
Q Consensus 555 GY~Vl~~~~~~~~~~ 569 (595)
||+|+. +|.+..|.
T Consensus 117 G~~V~~-~D~~G~G~ 130 (397)
T 3h2g_A 117 GYVVVG-SDYLGLGK 130 (397)
T ss_dssp TCEEEE-ECCTTSTT
T ss_pred CCEEEE-ecCCCCCC
Confidence 999999 77776664
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=1.2 Score=47.78 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
......|++++.+|+++- -....|+++++++... ..+....-. ....++..+.++.|+++-.
T Consensus 41 ~~~~ld~~~~~~~ly~sD---------~~~~~I~r~~~~g~~~~~~v~~~~~~----~P~GlAvD~~~~~ly~~d~---- 103 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSD---------VSEEAIKRTEFNKTESVQNVVVSGLL----SPDGLACDWLGEKLYWTDS---- 103 (619)
T ss_dssp CEEEEEEETTTTEEEEEE---------TTTTEEEEEEC-----CEEEECSSCS----CEEEEEEETTTTEEEEEET----
T ss_pred ceEEEEEEeCCCEEEEEE---------CCCCeEEEEEccCCCceEEEEeCCCC----CcCeEEEEecCCEEEEEeC----
Confidence 466778999888887753 2346789999876532 222211100 2346777777777777611
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCe-eecCCCC--eeeeeEECCCCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA-KDFGTPA--VYTAVEPSPDQK 187 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~lt~~~--~~~~~~~SpDg~ 187 (595)
...+|.+++++|.. +.|.... ....+++.|.+.
T Consensus 104 --------------------------------------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g 139 (619)
T 3s94_A 104 --------------------------------------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG 139 (619)
T ss_dssp --------------------------------------------TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTT
T ss_pred --------------------------------------------CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCC
Confidence 12457777887743 3333222 234788999888
Q ss_pred eEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCC
Q 007620 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (595)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (595)
+|+++.... ...|++.+++|...+.+..... ..+..+...++++ .|||...
T Consensus 140 ~ly~tD~g~-----------~~~I~r~~~dG~~~~~l~~~~~------------~~P~Glald~~~~-~LY~aD~----- 190 (619)
T 3s94_A 140 FMYWTDWGE-----------VPKIERAGMDGSSRFIIINSEI------------YWPNGLTLDYEEQ-KLYWADA----- 190 (619)
T ss_dssp EEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------SSEEEEEEETTTT-EEEEEET-----
T ss_pred eEEEeccCC-----------CCEEEEEECCCCceEEEEeCCC------------CCCcEEEEEccCC-EEEEEeC-----
Confidence 888885321 2378888998876666543211 0122456666655 4877631
Q ss_pred cccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 268 ~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
..+.++.++. +|...+.+.... .....+.+..| .++...+ ....|+++|..++
T Consensus 191 ------~~~~I~~~~~---dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg 244 (619)
T 3s94_A 191 ------KLNFIHKSNL---DGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTG 244 (619)
T ss_dssp ------TTCCEEEESS---SCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSC
T ss_pred ------CCCeEEEecC---CCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCC
Confidence 1235666675 554443333211 11223334333 3333322 3346888888664
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=56.85 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=42.5
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHh-ccCeEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la-~~GY~V 558 (595)
+..+.+++.+.||.+|.+++|+|.+ + +.|+||++|++-+ +.|... .+......|| ..||+|
T Consensus 58 ~~~~~~~i~~~~G~~i~~~~~~P~~----~--~~p~vv~~HGgG~--------~~g~~~----~~~~~~~~la~~~g~~v 119 (317)
T 3qh4_A 58 VAVADDVVTGEAGRPVPVRIYRAAP----T--PAPVVVYCHAGGF--------ALGNLD----TDHRQCLELARRARCAV 119 (317)
T ss_dssp CEEEEEEEECTTSCEEEEEEEECSC----S--SEEEEEEECCSTT--------TSCCTT----TTHHHHHHHHHHHTSEE
T ss_pred ceEEEEEecCCCCCeEEEEEEecCC----C--CCcEEEEECCCcC--------ccCChH----HHHHHHHHHHHHcCCEE
Confidence 4678899999999999999999976 2 3499999875311 111111 1112235566 559999
Q ss_pred Ee
Q 007620 559 LA 560 (595)
Q Consensus 559 l~ 560 (595)
+.
T Consensus 120 v~ 121 (317)
T 3qh4_A 120 VS 121 (317)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0048 Score=57.37 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=46.4
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+..+.++++. +|.++.++++.|.+-. + +.|+||++|+- ++... ......+.|+++||.|+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~p~~~~--~--~~p~vv~~HG~------------~g~~~---~~~~~~~~l~~~G~~v~ 63 (241)
T 3f67_A 4 IIAGETSIPS-QGENMPAYHARPKNAD--G--PLPIVIVVQEI------------FGVHE---HIRDLCRRLAQEGYLAI 63 (241)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTCC--S--CEEEEEEECCT------------TCSCH---HHHHHHHHHHHTTCEEE
T ss_pred ceeeeEEEec-CCcceEEEEecCCCCC--C--CCCEEEEEcCc------------CccCH---HHHHHHHHHHHCCcEEE
Confidence 3577889988 9999999999998632 2 44999998741 11111 11123578999999999
Q ss_pred eCCCCcee
Q 007620 560 AGPSIPII 567 (595)
Q Consensus 560 ~~~~~~~~ 567 (595)
. ++.+..
T Consensus 64 ~-~d~~g~ 70 (241)
T 3f67_A 64 A-PELYFR 70 (241)
T ss_dssp E-ECTTTT
T ss_pred E-eccccc
Confidence 9 776544
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=54.74 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=32.3
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
+.+.++|.+. +|.++..++++|.++++++++ |+||++|+.
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~--P~vv~lHG~ 71 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGYSKDKKY--SVLYLLHGI 71 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCB--CEEEEECCT
T ss_pred eEEEEEEeccccCCceEEEEEeCCCCCCCCCc--cEEEEECCC
Confidence 6777888765 688999999999998765545 999998753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.77 E-value=1.3 Score=41.45 Aligned_cols=113 Identities=6% Similarity=-0.060 Sum_probs=57.7
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+...+.|+ |+ .|+.+..... ...|.++|++++++..-...+. ........+++.
T Consensus 44 ftqGL~~~-~~-~LyestG~~g----------~S~v~~vD~~Tgkv~~~~~l~~-------------~~FgeGit~~g~- 97 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNG----------RSSIRKVDIESGKTLQQIELGK-------------RYFGEGISDWKD- 97 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETT----------EEEEEEECTTTCCEEEEEECCT-------------TCCEEEEEEETT-
T ss_pred ccceEEEE-CC-EEEEECCCCC----------CceEEEEECCCCcEEEEEecCC-------------ccceeEEEEeCC-
Confidence 44578888 54 6666653321 2478899998776533222210 011111233444
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.||.+.+. .+.++++|. .+. +...-..... .....++|+..|+..+ +...|+.+|+.+.
T Consensus 98 ~ly~ltw~-----------~~~v~v~D~--~t~-~~~~ti~~~~--eG~glt~dg~~L~~Sd----Gs~~i~~iDp~T~ 156 (262)
T 3nol_A 98 KIVGLTWK-----------NGLGFVWNI--RNL-RQVRSFNYDG--EGWGLTHNDQYLIMSD----GTPVLRFLDPESL 156 (262)
T ss_dssp EEEEEESS-----------SSEEEEEET--TTC-CEEEEEECSS--CCCCEEECSSCEEECC----SSSEEEEECTTTC
T ss_pred EEEEEEee-----------CCEEEEEEC--ccC-cEEEEEECCC--CceEEecCCCEEEEEC----CCCeEEEEcCCCC
Confidence 46655321 246777785 222 3222111111 2234457877665542 2347999999884
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0055 Score=58.66 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=43.9
Q ss_pred ceEEEEEE-CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQ-RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~-~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++. ..+|.++...+++|+++++ + +.|+||++|+... ....|... ....++++++||+|+
T Consensus 15 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~--~~p~vv~lHG~~~-----------~~~~~~~~-~~~~~~~~~~g~~vv 79 (282)
T 3fcx_A 15 LQKVFEHDSVELNCKMKFAVYLPPKAET-G--KCPALYWLSGLTC-----------TEQNFISK-SGYHQSASEHGLVVI 79 (282)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGT-S--CEEEEEEECCTTC-----------CSHHHHHH-SCCHHHHHHHTCEEE
T ss_pred cEEEEEEEchhcCCeeEEEEEcCCCCCC-C--CCCEEEEEcCCCC-----------Cccchhhc-chHHHHhhcCCeEEE
Confidence 34444554 4589999999999998764 3 4499999875310 00111111 012478899999999
Q ss_pred eCCCCc
Q 007620 560 AGPSIP 565 (595)
Q Consensus 560 ~~~~~~ 565 (595)
. |+.+
T Consensus 80 ~-~d~~ 84 (282)
T 3fcx_A 80 A-PDTS 84 (282)
T ss_dssp E-ECSC
T ss_pred E-eccc
Confidence 9 6653
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=55.99 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=41.7
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~V 558 (595)
+..+.+++++.|| +|.+++|+|.+. .. |+||++|++.| +.|....+ ......||+ +||+|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~----~~--p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPT----SQ--ATLYYLHGGGF--------ILGNLDTH----DRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSS----CS--CEEEEECCSTT--------TSCCTTTT----HHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCC----CC--cEEEEECCCCc--------ccCChhhh----HHHHHHHHHHcCCEE
Confidence 3458999999999 899999999752 12 99999875311 11111111 112457777 79999
Q ss_pred Ee
Q 007620 559 LA 560 (595)
Q Consensus 559 l~ 560 (595)
+.
T Consensus 122 ~~ 123 (326)
T 3ga7_A 122 IG 123 (326)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0081 Score=64.51 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=44.5
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchh-HHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~-q~la~~GY~Vl 559 (595)
..+.++++.+||.+|.+.+++|.+ . + +.|+||+.||. |........+.... ++||++||+|+
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~--~-~--~~P~vv~~~~~------------g~~~~~~~~y~~~~~~~la~~Gy~vv 70 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDA--D-G--PVPVLLVRNPY------------DKFDVFAWSTQSTNWLEFVRDGYAVV 70 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC--S-S--CEEEEEEEESS------------CTTCHHHHHTTTCCTHHHHHTTCEEE
T ss_pred EEEEEEEECCCCCEEEEEEEECCC--C-C--CeeEEEEECCc------------CCCccccccchhhHHHHHHHCCCEEE
Confidence 467799999999999999999975 1 2 34999987642 11111000001123 89999999999
Q ss_pred eCCCCc
Q 007620 560 AGPSIP 565 (595)
Q Consensus 560 ~~~~~~ 565 (595)
. .+..
T Consensus 71 ~-~D~R 75 (587)
T 3i2k_A 71 I-QDTR 75 (587)
T ss_dssp E-EECT
T ss_pred E-EcCC
Confidence 8 4443
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=56.69 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=43.2
Q ss_pred eEEEEE-ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 482 KEMIKY-QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 482 ~e~v~~-~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.+.+++ ...+|.++..++++|++++ ++++ |+||++|+.. +....|... ....++++.+||+|+.
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~--p~vv~lHG~~-----------~~~~~~~~~-~~~~~~~~~~g~~vv~ 86 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE-NRPL--GVIYWLSGLT-----------CTEQNFITK-SGFQRYAAEHQVIVVA 86 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT-CCCE--EEEEEECCTT-----------CCSHHHHHH-SCTHHHHHHHTCEEEE
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC-CCCC--CEEEEEcCCC-----------CCccchhhc-ccHHHHHhhCCeEEEE
Confidence 344444 4457899999999999986 3434 9999987531 011112110 1124688889999999
Q ss_pred CCCCc
Q 007620 561 GPSIP 565 (595)
Q Consensus 561 ~~~~~ 565 (595)
|+.+
T Consensus 87 -~d~~ 90 (283)
T 4b6g_A 87 -PDTS 90 (283)
T ss_dssp -ECSS
T ss_pred -eccc
Confidence 6654
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=52.93 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=48.2
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+++++.|| ++.++++.|.+-.+ ++ .|+||++|+... +++... ........+.|+++||.|+.
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~~-~~--~~~vv~~HG~~~---------~~~~~~-~~~~~~~~~~l~~~g~~v~~ 74 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDVA-VQ--PVTAIVCHPLST---------EGGSMH-NKVVTMAARALRELGITVVR 74 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSC-CC--SEEEEEECSCTT---------TTCSTT-CHHHHHHHHHHHTTTCEEEE
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCCc-cc--cCEEEEECCCCC---------cCCccc-chHHHHHHHHHHHCCCeEEE
Confidence 678899999999 99999999986311 12 399999774211 011100 00001234788999999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++.+..|.
T Consensus 75 -~d~~g~g~ 82 (220)
T 2fuk_A 75 -FNFRSVGT 82 (220)
T ss_dssp -ECCTTSTT
T ss_pred -EecCCCCC
Confidence 77776654
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=56.44 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=45.3
Q ss_pred ceEEEEEE-CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQ-RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~-~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+++. ..+|.++..++++|++++ ++ +.|+||++|+.. +....|.... ...++++..||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~--~~p~vv~lHG~~-----------~~~~~~~~~~-~~~~~~~~~g~~vv 78 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKAI-HE--PCPVVWYLSGLT-----------CTHANVMEKG-EYRRMASELGLVVV 78 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TS--CEEEEEEECCTT-----------CCSHHHHHHS-CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCcceEEEEcCCCCC-CC--CCCEEEEEcCCC-----------CCccchhhcc-cHHHHHhhCCeEEE
Confidence 45556664 558999999999999875 33 349999987531 1111111110 12356777799999
Q ss_pred eCCCCceee
Q 007620 560 AGPSIPIIG 568 (595)
Q Consensus 560 ~~~~~~~~~ 568 (595)
. |+.+..|
T Consensus 79 ~-~d~~g~G 86 (278)
T 3e4d_A 79 C-PDTSPRG 86 (278)
T ss_dssp E-CCSSCCS
T ss_pred e-cCCcccC
Confidence 9 7766444
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0052 Score=56.93 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=44.8
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCC
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (595)
|.+++++.||.+|+++++.|.+ + +.|+||++|+. .+....+ ....+.|+++||.|+. +
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~----~--~~p~vv~~hG~-----------~~~~~~~----~~~~~~l~~~g~~v~~-~ 61 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK----A--PAPVIVIAQDI-----------FGVNAFM----RETVSWLVDQGYAAVC-P 61 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS----C--SEEEEEEECCT-----------TBSCHHH----HHHHHHHHHTTCEEEE-E
T ss_pred ceEEEecCCCCeEEEEEECCCC----C--CCCEEEEEcCC-----------CCCCHHH----HHHHHHHHhCCcEEEe-c
Confidence 4567888999999999999974 2 23999997742 0111111 1235788999999999 7
Q ss_pred CCceeec
Q 007620 563 SIPIIGE 569 (595)
Q Consensus 563 ~~~~~~~ 569 (595)
+.+..|.
T Consensus 62 d~~g~g~ 68 (236)
T 1zi8_A 62 DLYARQA 68 (236)
T ss_dssp CGGGGTS
T ss_pred cccccCC
Confidence 7776554
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=56.61 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCC
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (595)
.+|...||.+|++++..|....+++ +.|+||++|++.+. .+. ........+.|+++||+|+. ++.
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~~~~--~~p~vv~~HGgg~~--------~~~----~~~~~~~~~~l~~~G~~v~~-~d~ 81 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQNENY--TFPAIIICPGGGYQ--------HIS----QRESDPLALAFLAQGYQVLL-LNY 81 (276)
T ss_dssp EECCCBTTBEEEEECCCC------C--CBCEEEEECCSTTT--------SCC----GGGSHHHHHHHHHTTCEEEE-EEC
T ss_pred ccccCCCCeEEEEEEeCCcccccCC--CCCEEEEEcCCccc--------cCC----chhhHHHHHHHHHCCCEEEE-ecC
Confidence 4567789999999988876543333 44999998753110 011 11111234789999999999 555
Q ss_pred ceeec
Q 007620 565 PIIGE 569 (595)
Q Consensus 565 ~~~~~ 569 (595)
+..|.
T Consensus 82 ~g~g~ 86 (276)
T 3hxk_A 82 TVMNK 86 (276)
T ss_dssp CCTTS
T ss_pred ccCCC
Confidence 54443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.4 Score=49.02 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=83.0
Q ss_pred ccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
...+.++| ++..|++ +.. . ..|.+++++++..+.+..... ....+.|+++|+.|+++-...
T Consensus 139 P~~lavdp~~~g~Lyv-~d~--------~-~~I~~id~~~~~v~~~~~~~~-----~P~~ia~d~~G~~lyvad~~~--- 200 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYL-VGE--------Q-HPTRLIDFEKEYVSTVYSGLS-----KVRTICWTHEADSMIITNDQN--- 200 (430)
T ss_dssp CCEEEEETTEEEEEEE-EEB--------T-EEEEEEETTTTEEEEEECCCS-----CEEEEEECTTSSEEEEEECCS---
T ss_pred CCEEEECCCCCCeEEE-EeC--------C-CcEEEEECCCCEEEEEecCCC-----CcceEEEeCCCCEEEEEeCCC---
Confidence 45678998 4656544 432 2 789999999887766643221 345789999999888762210
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCe---eecCCCCeeeeeEECCCCCe
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA---KDFGTPAVYTAVEPSPDQKY 188 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~lt~~~~~~~~~~SpDg~~ 188 (595)
++ ....+++++.+|.. +.+........++++|++.+
T Consensus 201 ------------------~~-----------------------~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 201 ------------------NN-----------------------DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239 (430)
T ss_dssp ------------------CT-----------------------TSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC
T ss_pred ------------------Cc-----------------------ccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE
Confidence 00 00123333333321 12221122346789996667
Q ss_pred EEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEE
Q 007620 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (595)
|+++... ..+|++++.+++....+...+.. ..++.+.++|+|+ .||+.
T Consensus 240 lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~~-----------~~P~gia~~pdG~-~lyv~ 287 (430)
T 3tc9_A 240 LYFNSWN------------AGQVFRYDFTTQETTPLFTIQDS-----------GWEFHIQFHPSGN-YAYIV 287 (430)
T ss_dssp EEEEETT------------TTEEEEEETTTTEEEEEEECSSS-----------SCCEEEEECTTSS-EEEEE
T ss_pred EEEEECC------------CCEEEEEECCCCcEEEEEEcCCC-----------CcceeEEEcCCCC-EEEEE
Confidence 8777532 24799999988776444322110 1134588899987 36554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=1.9 Score=40.55 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=65.7
Q ss_pred eEEEEcCCCCeeecCC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCC
Q 007620 158 QLVLGSLDGTAKDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (595)
Q Consensus 158 ~l~~~d~~g~~~~lt~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~ 234 (595)
.|++++.+|+...+.. ......+.++++|+ |+++... ...|+++|. +++...+.. +...
T Consensus 121 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~------------~~~i~~~~~-~g~~~~~~~-~~~~--- 182 (299)
T 2z2n_A 121 RIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQ------------NNAIGRITE-SGDITEFKI-PTPA--- 182 (299)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-EEEEETT------------TTEEEEECT-TCCEEEEEC-SSTT---
T ss_pred eEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCC------------CCEEEEEcC-CCcEEEeeC-CCCC---
Confidence 4566666554443321 12345788999985 5555422 236888998 554444311 1000
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCccccceeecCCCcE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLA 312 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~~~~~~~wspDg~~ 312 (595)
.....+...++|. |++.. .....+++++. ++ +...+.. .......+.++++|..
T Consensus 183 -------~~~~~i~~~~~g~--l~v~~-----------~~~~~i~~~~~---~g-~~~~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 183 -------SGPVGITKGNDDA--LWFVE-----------IIGNKIGRITT---SG-EITEFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp -------CCEEEEEECTTSS--EEEEE-----------TTTTEEEEECT---TC-CEEEEECSSTTCCEEEEEECSTTCE
T ss_pred -------CcceeEEECCCCC--EEEEc-----------cCCceEEEECC---CC-cEEEEECCCCCCCceeEEECCCCCE
Confidence 1122455666665 54431 11235666663 33 4333211 1123456778888885
Q ss_pred EEEEEeecccceEEEEEeCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~ 333 (595)
++... ....|+++|+++
T Consensus 239 ~v~~~----~~~~i~~~d~~g 255 (299)
T 2z2n_A 239 WFTEW----GANKIGRLTSNN 255 (299)
T ss_dssp EEEET----TTTEEEEEETTT
T ss_pred EEecc----CCceEEEECCCC
Confidence 55431 223788899843
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=2.3 Score=41.12 Aligned_cols=127 Identities=14% Similarity=0.009 Sum_probs=63.3
Q ss_pred eeeeEECC-CCCeEEEEEcccCcccc-----ccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceee
Q 007620 177 YTAVEPSP-DQKYVLITSMHRPYSYK-----VPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (595)
Q Consensus 177 ~~~~~~Sp-Dg~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (595)
...+.+.| +|+ |+++.....+... +........|+++|..+++.+.+...- ..+..+.++
T Consensus 128 p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------------~~p~gia~~ 193 (322)
T 2fp8_A 128 LYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL-------------HVPGGAEVS 193 (322)
T ss_dssp EEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE-------------SCCCEEEEC
T ss_pred cceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC-------------ccCcceEEC
Confidence 34788999 884 6666432110000 000001247999998877665442110 112357889
Q ss_pred cCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCC---CceeccccCccccceeecCCCcEEEEEEeec------c
Q 007620 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE---KPEILHKLDLRFRSVSWCDDSLALVNETWYK------T 321 (595)
Q Consensus 251 pdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~---~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~------~ 321 (595)
+||+ .||+... ....+++++. ++. ..+.+....+ ...+...++|..++...... .
T Consensus 194 ~dg~-~lyv~d~-----------~~~~I~~~~~---~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 194 ADSS-FVLVAEF-----------LSHQIVKYWL---EGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp TTSS-EEEEEEG-----------GGTEEEEEES---SSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred CCCC-EEEEEeC-----------CCCeEEEEEC---CCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 9987 3554421 1235666665 321 2222222222 44566778887555442200 1
Q ss_pred cceEEEEEeCCC
Q 007620 322 SQTRTWLVCPGS 333 (595)
Q Consensus 322 ~~~~L~~~d~~~ 333 (595)
....|+++|.++
T Consensus 258 ~~~~v~~~d~~G 269 (322)
T 2fp8_A 258 VDPKGIKFDEFG 269 (322)
T ss_dssp EEEEEEEECTTS
T ss_pred CccEEEEECCCC
Confidence 134688888765
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.033 Score=52.12 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred ceE--EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHHhccCeE
Q 007620 481 QKE--MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFA 557 (595)
Q Consensus 481 ~~e--~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~la~~GY~ 557 (595)
..| .+.+++.|| +|.++++.|.+ ++. |+||++|+... +++ .+.... ....+.|+.+||.
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~----~~~--p~vv~~HG~~~---------~~~--~~~~~~~~~~~~~l~~~G~~ 81 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE----KSA--PIAIILHPHPQ---------FGG--TMNNQIVYQLFYLFQKRGFT 81 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS----TTC--CEEEEECCCGG---------GTC--CTTSHHHHHHHHHHHHTTCE
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC----CCC--CEEEEECCCcc---------cCC--CccchHHHHHHHHHHHCCCE
Confidence 556 999999999 99999998864 223 88898774210 001 111111 1235789999999
Q ss_pred EEeCCCCceeecC
Q 007620 558 VLAGPSIPIIGEG 570 (595)
Q Consensus 558 Vl~~~~~~~~~~~ 570 (595)
|+. ++.+..|..
T Consensus 82 v~~-~d~~g~G~s 93 (249)
T 2i3d_A 82 TLR-FNFRSIGRS 93 (249)
T ss_dssp EEE-ECCTTSTTC
T ss_pred EEE-ECCCCCCCC
Confidence 999 887776643
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0058 Score=58.66 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=34.3
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
..+.+++++. +|.++..+|++|++|+++++| |+|++.|+
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~--Pvl~~lhG 56 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQPAPDSGY--PVIYVLDG 56 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSCCCTTCE--EEEEEESH
T ss_pred CceEEEEEecCCCCEEEEEEECCCCCCCCCCc--cEEEEecC
Confidence 7889999987 799999999999999877766 99999764
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.032 Score=54.29 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=44.7
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc-CeEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAV 558 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~-GY~V 558 (595)
...+.+++++.|| +|.+++|.|.+.. + +.|+||++|++.+ ..|.... +....+.|+++ ||.|
T Consensus 46 ~~~~~~~i~~~~g-~l~~~~~~P~~~~--~--~~p~vv~~HGGg~--------~~g~~~~----~~~~~~~la~~~g~~v 108 (310)
T 2hm7_A 46 AEVREFDMDLPGR-TLKVRMYRPEGVE--P--PYPALVYYHGGSW--------VVGDLET----HDPVCRVLAKDGRAVV 108 (310)
T ss_dssp SEEEEEEEEETTE-EEEEEEEECTTCC--S--SEEEEEEECCSTT--------TSCCTTT----THHHHHHHHHHHTSEE
T ss_pred ceEEEEEeccCCC-eEEEEEEecCCCC--C--CCCEEEEECCCcc--------ccCChhH----hHHHHHHHHHhcCCEE
Confidence 3788899999888 9999999998642 2 3499999875311 1111111 11234677876 9999
Q ss_pred EeCCCCc
Q 007620 559 LAGPSIP 565 (595)
Q Consensus 559 l~~~~~~ 565 (595)
+. ++.+
T Consensus 109 ~~-~d~r 114 (310)
T 2hm7_A 109 FS-VDYR 114 (310)
T ss_dssp EE-ECCC
T ss_pred EE-eCCC
Confidence 98 5443
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.019 Score=52.26 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=45.8
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+..+.++++. ||.+|.++++.|.+ +. |+||++|+.. +....+. .....+.|+++||.|+
T Consensus 10 ~~~~~~~~~~-~g~~l~~~~~~p~~-----~~--p~vv~~hG~~-----------~~~~~~~--~~~~~~~l~~~G~~v~ 68 (223)
T 2o2g_A 10 PQEYAVSVSV-GEVKLKGNLVIPNG-----AT--GIVLFAHGSG-----------SSRYSPR--NRYVAEVLQQAGLATL 68 (223)
T ss_dssp CCEEEEEEEE-TTEEEEEEEECCTT-----CC--EEEEEECCTT-----------CCTTCHH--HHHHHHHHHHHTCEEE
T ss_pred ceeeEEEEec-CCeEEEEEEecCCC-----Cc--eEEEEecCCC-----------CCCCccc--hHHHHHHHHHCCCEEE
Confidence 3678889986 99999999999975 23 8999876420 1111110 0123578999999999
Q ss_pred eCCCCceee
Q 007620 560 AGPSIPIIG 568 (595)
Q Consensus 560 ~~~~~~~~~ 568 (595)
. ++.+..|
T Consensus 69 ~-~d~~g~g 76 (223)
T 2o2g_A 69 L-IDLLTQE 76 (223)
T ss_dssp E-ECSSCHH
T ss_pred E-EcCCCcC
Confidence 9 7777655
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.013 Score=56.94 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=43.1
Q ss_pred ceEEEEEE---CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeE
Q 007620 481 QKEMIKYQ---RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (595)
Q Consensus 481 ~~e~v~~~---~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~ 557 (595)
....++|+ ..+|.+|+++++.|.++++ +.|+||++|+. ......+.....++++++||+
T Consensus 23 g~~~~~~~~~~~~~~~~l~~~~~~P~~~~~----~~p~vv~lHG~--------------~~~~~~~~~~~~~~l~~~g~~ 84 (304)
T 3d0k_A 23 GRNAIPYLDDDRNADRPFTLNTYRPYGYTP----DRPVVVVQHGV--------------LRNGADYRDFWIPAADRHKLL 84 (304)
T ss_dssp EEEEEEECC---CTTCCEEEEEEECTTCCT----TSCEEEEECCT--------------TCCHHHHHHHTHHHHHHHTCE
T ss_pred CCceEEecccCCCCCceEEEEEEeCCCCCC----CCcEEEEeCCC--------------CCCHHHHHHHHHHHHHHCCcE
Confidence 34457777 7899999999999987643 23999997743 211010101224788899999
Q ss_pred EEeCCCCc
Q 007620 558 VLAGPSIP 565 (595)
Q Consensus 558 Vl~~~~~~ 565 (595)
|+. |+.+
T Consensus 85 v~~-~d~~ 91 (304)
T 3d0k_A 85 IVA-PTFS 91 (304)
T ss_dssp EEE-EECC
T ss_pred EEE-eCCc
Confidence 998 5554
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.073 Score=53.28 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=39.8
Q ss_pred CceEEEEEECCCCcEEEEEEEc-CCCCC------------------CCCCCCCcEEEEeccCCccCcccCCcccCCCCcc
Q 007620 480 LQKEMIKYQRKDGVPLTATLYL-PPGYD------------------QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~-P~~~~------------------~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~ 540 (595)
...+.+++.+.|| +...+|+ |.+.. +....++|+||++|++.+ +.|....
T Consensus 62 v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~--------~~g~~~~- 130 (365)
T 3ebl_A 62 VSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSF--------VHSSASS- 130 (365)
T ss_dssp EEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTT--------TSCCTTB-
T ss_pred CceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCcc--------ccCCCch-
Confidence 3778899999999 7777887 87631 011235699999875421 1111110
Q ss_pred cCCCCchhHHHhcc-CeEEEe
Q 007620 541 SGMTPTSSLIFLAR-RFAVLA 560 (595)
Q Consensus 541 ~~~~~~~~q~la~~-GY~Vl~ 560 (595)
..+....+.||++ ||+|+.
T Consensus 131 -~~~~~~~~~la~~~g~~Vv~ 150 (365)
T 3ebl_A 131 -TIYDSLCRRFVKLSKGVVVS 150 (365)
T ss_dssp -HHHHHHHHHHHHHHTSEEEE
T ss_pred -hhHHHHHHHHHHHCCCEEEE
Confidence 0001124678876 999998
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=58.89 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=46.9
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+.++. +|.+|.++++.|.+ . + +.|+||++|+. ++.. ........+.|+++||+|+.
T Consensus 167 ~~~~v~i~~-~g~~l~~~~~~P~~-~--~--~~P~vv~~hG~------------~~~~--~~~~~~~~~~l~~~G~~V~~ 226 (415)
T 3mve_A 167 IIKQLEIPF-EKGKITAHLHLTNT-D--K--PHPVVIVSAGL------------DSLQ--TDMWRLFRDHLAKHDIAMLT 226 (415)
T ss_dssp EEEEEEEEC-SSSEEEEEEEESCS-S--S--CEEEEEEECCT------------TSCG--GGGHHHHHHTTGGGTCEEEE
T ss_pred CeEEEEEEE-CCEEEEEEEEecCC-C--C--CCCEEEEECCC------------CccH--HHHHHHHHHHHHhCCCEEEE
Confidence 577788876 89999999999986 2 2 34999997642 1110 11111224688899999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++.|..|.
T Consensus 227 -~D~~G~G~ 234 (415)
T 3mve_A 227 -VDMPSVGY 234 (415)
T ss_dssp -ECCTTSGG
T ss_pred -ECCCCCCC
Confidence 88887665
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.021 Score=54.67 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=46.2
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+.++. ||.+|.++++.|. +. |+||++|+. +.. ...+....+.|+.+||.|+.
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~------~~--p~vv~~HG~--------------~~~-~~~~~~~~~~l~~~g~~v~~ 60 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT------GM--PGVLFVHGW--------------GGS-QHHSLVRAREAVGLGCICMT 60 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE------SE--EEEEEECCT--------------TCC-TTTTHHHHHHHHTTTCEEEC
T ss_pred ceeeEEecC-CCeEEEEEEecCC------CC--cEEEEeCCC--------------CCC-cCcHHHHHHHHHHCCCEEEE
Confidence 467788886 8999999999997 22 999997742 111 11111235789999999999
Q ss_pred CCCCceeecC
Q 007620 561 GPSIPIIGEG 570 (595)
Q Consensus 561 ~~~~~~~~~~ 570 (595)
++.+..|..
T Consensus 61 -~d~~G~g~s 69 (290)
T 3ksr_A 61 -FDLRGHEGY 69 (290)
T ss_dssp -CCCTTSGGG
T ss_pred -eecCCCCCC
Confidence 888876653
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.036 Score=52.71 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=42.6
Q ss_pred eEEEEEECCCCcEEEEEEEcCCC---CCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEE
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPG---YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~---~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~V 558 (595)
.+.+++ ..+|.++...+++|.+ +.+.+ +.|+||++|++-+. .+... .+....+.|+++||.|
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~--~~p~vv~~HGgg~~--------~~~~~----~~~~~~~~l~~~G~~v 68 (277)
T 3bxp_A 4 VEQRTL-NTAAHPFQITAYWLDQISDFETAV--DYPIMIICPGGGFT--------YHSGR----EEAPIATRMMAAGMHT 68 (277)
T ss_dssp EEEEEE-CSTTCCEEEEEEEECCCCSSSCCC--CEEEEEEECCSTTT--------SCCCT----THHHHHHHHHHTTCEE
T ss_pred eEEEEe-ccCCCcceEEEEeCCcccccccCC--CccEEEEECCCccc--------cCCCc----cchHHHHHHHHCCCEE
Confidence 456677 4688999999999983 23333 44999998753110 01100 1112346889999999
Q ss_pred EeCCCCce
Q 007620 559 LAGPSIPI 566 (595)
Q Consensus 559 l~~~~~~~ 566 (595)
+. ++.+.
T Consensus 69 ~~-~d~~g 75 (277)
T 3bxp_A 69 VV-LNYQL 75 (277)
T ss_dssp EE-EECCC
T ss_pred EE-Eeccc
Confidence 99 55444
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=94.74 E-value=1.4 Score=43.31 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=25.0
Q ss_pred cceEEEEcC-CCCe-eecCCC-C-eeeeeEECCCCCeEEEEEc
Q 007620 156 TAQLVLGSL-DGTA-KDFGTP-A-VYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 156 ~~~l~~~d~-~g~~-~~lt~~-~-~~~~~~~SpDg~~l~~~~~ 194 (595)
...|.+.|+ +|+. ..|... . ....++|||||++|+-.+.
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 346778888 6654 345422 2 2335799999999886653
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.042 Score=51.64 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=40.7
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCC----CCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccC
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYD----QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~----~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~G 555 (595)
..+.+++.+. +|.++.++|++|.+++ +.+ +.|+||++|+.. +....|... .....+++..|
T Consensus 6 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~--~~p~vv~~HG~~-----------~~~~~~~~~-~~~~~~~~~~~ 71 (263)
T 2uz0_A 6 AVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECE--DIPVLYLLHGMS-----------GNHNSWLKR-TNVERLLRGTN 71 (263)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECC---------C--CBCEEEEECCTT-----------CCTTHHHHH-SCHHHHTTTCC
T ss_pred eEeEEEEechhhCCceeEEEEeCCCccccCCcCC--CCCEEEEECCCC-----------CCHHHHHhc-cCHHHHHhcCC
Confidence 4566777654 7899999999999873 233 449999987531 111112110 01123555679
Q ss_pred eEEEeCCCCce
Q 007620 556 FAVLAGPSIPI 566 (595)
Q Consensus 556 Y~Vl~~~~~~~ 566 (595)
|+|+. |+...
T Consensus 72 ~~v~~-~~~~~ 81 (263)
T 2uz0_A 72 LIVVM-PNTSN 81 (263)
T ss_dssp CEEEE-CCCTT
T ss_pred eEEEE-ECCCC
Confidence 99997 65543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=94.65 E-value=2.9 Score=39.23 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=65.4
Q ss_pred eEEEEcCCCCeeec--CC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCC
Q 007620 158 QLVLGSLDGTAKDF--GT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (595)
Q Consensus 158 ~l~~~d~~g~~~~l--t~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~ 234 (595)
.|++++.+|+...+ .. ......+.+.++|+ |+++... ...|+++|.++. ...+.. +...
T Consensus 126 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~------------~~~i~~~~~~g~-~~~~~~-~~~~--- 187 (300)
T 2qc5_A 126 RIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ------------NNSIGRITNTGK-LEEYPL-PTNA--- 187 (300)
T ss_dssp EEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-EEEEETT------------TTEEEEECTTCC-EEEEEC-SSTT---
T ss_pred eEEEECCCCCEEEccCCCCCCCceeEEECCCCC-EEEEecC------------CCeEEEECCCCc-EEEeeC-CCCC---
Confidence 45666665544332 21 12345788999998 6665432 236888888443 333321 1000
Q ss_pred ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcE
Q 007620 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~ 312 (595)
.....+...++|. |++.. .....+++++. + ++...+. ........+.++++|..
T Consensus 188 -------~~~~~i~~d~~g~--l~v~~-----------~~~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 188 -------AAPVGITSGNDGA--LWFVE-----------IMGNKIGRITT---T-GEISEYDIPTPNARPHAITAGKNSEI 243 (300)
T ss_dssp -------CCEEEEEECTTSS--EEEEE-----------TTTTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred -------CCcceEEECCCCC--EEEEc-----------cCCCEEEEEcC---C-CcEEEEECCCCCCCceEEEECCCCCE
Confidence 1122455566664 54431 11234666663 3 2433321 11223456778888875
Q ss_pred EEEEEeecccceEEEEEeCCC
Q 007620 313 LVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~ 333 (595)
++... ....|+++++++
T Consensus 244 ~v~~~----~~~~i~~~~~~g 260 (300)
T 2qc5_A 244 WFTEW----GANQIGRITNDN 260 (300)
T ss_dssp EEEET----TTTEEEEECTTS
T ss_pred EEecc----CCCeEEEECCCC
Confidence 55431 224788999843
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.041 Score=55.34 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=47.3
Q ss_pred ceEEEEEECCC--C--cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccC-CCCchhHHHh-cc
Q 007620 481 QKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFL-AR 554 (595)
Q Consensus 481 ~~e~v~~~~~D--G--~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~-~~~~~~q~la-~~ 554 (595)
+...|.|++.| | ..+.|+|++|.+. + .+.|+|++.|+... .. ...|. +.. ..+...+.|| ++
T Consensus 42 ~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~-~---~~~PvV~~~HG~~~-----~~--~~~ps-~~~~~~~~~~~~lal~~ 109 (377)
T 4ezi_A 42 QLYKINYKTQSPDGNLTIASGLVAMPIHP-V---GQVGIISYQHGTRF-----ER--NDVPS-RNNEKNYIYLAAYGNSA 109 (377)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEESSC-S---SCEEEEEEECCCCC-----ST--TCSGG-GCCGGGHHHHHHHTTTT
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCC-C---CCCcEEEEeCCCcC-----Cc--ccCCC-cCcccchHHHHHHHHhC
Confidence 56667776665 5 4688999999874 1 24599999886421 00 11121 110 0112346788 99
Q ss_pred CeEEEeCCCCceeec
Q 007620 555 RFAVLAGPSIPIIGE 569 (595)
Q Consensus 555 GY~Vl~~~~~~~~~~ 569 (595)
||+|+. +|.+..|.
T Consensus 110 Gy~Vv~-~D~rG~G~ 123 (377)
T 4ezi_A 110 GYMTVM-PDYLGLGD 123 (377)
T ss_dssp CCEEEE-ECCTTSTT
T ss_pred CcEEEE-eCCCCCCC
Confidence 999999 77777664
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.1 Score=51.21 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=43.4
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc-CeEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAV 558 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~-GY~V 558 (595)
...+.+++.+.+| +|.+++|.|.+ . + +.|+||++|++-| +.|.... +......||.+ ||.|
T Consensus 63 ~~~~~~~i~~~~~-~i~~~iy~P~~-~--~--~~p~vv~~HGGg~--------~~g~~~~----~~~~~~~La~~~g~~V 124 (323)
T 3ain_A 63 GKIEDITIPGSET-NIKARVYYPKT-Q--G--PYGVLVYYHGGGF--------VLGDIES----YDPLCRAITNSCQCVT 124 (323)
T ss_dssp SEEEEEEEECSSS-EEEEEEEECSS-C--S--CCCEEEEECCSTT--------TSCCTTT----THHHHHHHHHHHTSEE
T ss_pred cEEEEEEecCCCC-eEEEEEEecCC-C--C--CCcEEEEECCCcc--------ccCChHH----HHHHHHHHHHhcCCEE
Confidence 4788899998888 89999999986 2 2 3499999875311 1111111 11224577764 9999
Q ss_pred EeCCCCc
Q 007620 559 LAGPSIP 565 (595)
Q Consensus 559 l~~~~~~ 565 (595)
+. ++.+
T Consensus 125 v~-~Dyr 130 (323)
T 3ain_A 125 IS-VDYR 130 (323)
T ss_dssp EE-ECCC
T ss_pred EE-ecCC
Confidence 98 4443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.40 E-value=2.1 Score=43.58 Aligned_cols=56 Identities=9% Similarity=-0.004 Sum_probs=38.4
Q ss_pred ccceEEccC--CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 33 INFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
...+.|+|+ +..|++ +.. . ..|+++++++|+...+..... ....+.|+++|+ |+++
T Consensus 141 P~gvavd~~s~~g~Lyv-~D~--------~-~~I~~id~~~g~v~~~~~~~~-----~P~giavd~dG~-lyVa 198 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYW-VGQ--------R-DAFRHVDFVNQYVDIKTTNIG-----QCADVNFTLNGD-MVVV 198 (433)
T ss_dssp CCEEEECTTTTTCEEEE-ECB--------T-SCEEEEETTTTEEEEECCCCS-----CEEEEEECTTCC-EEEE
T ss_pred CceEEEccccCCCEEEE-EeC--------C-CCEEEEECCCCEEEEeecCCC-----CccEEEECCCCC-EEEE
Confidence 456789995 455554 432 2 789999998888776643221 245789999999 6665
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.07 Score=53.27 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=43.6
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+++++.||..|.+++|.|.+.. + +.|+||++|++.| +.|.... ..+....+.|+++||+|+.
T Consensus 81 ~~~~~~~~~~~g~~l~~~v~~p~~~~--~--~~p~vv~iHGgg~--------~~g~~~~--~~~~~~~~~la~~g~~vv~ 146 (361)
T 1jkm_A 81 ETSTETILGVDGNEITLHVFRPAGVE--G--VLPGLVYTHGGGM--------TILTTDN--RVHRRWCTDLAAAGSVVVM 146 (361)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCC--S--CEEEEEEECCSTT--------TSSCSSS--HHHHHHHHHHHHTTCEEEE
T ss_pred eeeeeeeecCCCCeEEEEEEeCCCCC--C--CCeEEEEEcCCcc--------ccCCCcc--cchhHHHHHHHhCCCEEEE
Confidence 56778889999999999999998632 2 4599999875421 1111110 0001124688889999998
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.15 Score=50.43 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=48.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCC--CCchhHHHhccCeEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARRFAV 558 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~--~~~~~q~la~~GY~V 558 (595)
..+.+.++..||..|..+.+.|....+....+-|+||++|+.. ++...|... .....+.|+++||.|
T Consensus 26 ~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~-----------~~~~~~~~~~~~~~~a~~l~~~G~~v 94 (377)
T 1k8q_A 26 PAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLL-----------ASATNWISNLPNNSLAFILADAGYDV 94 (377)
T ss_dssp CCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTT-----------CCGGGGSSSCTTTCHHHHHHHTTCEE
T ss_pred CceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCC-----------CchhhhhcCCCcccHHHHHHHCCCCE
Confidence 6788889999999999999977542100001228888876421 111122211 112345899999999
Q ss_pred EeCCCCceeec
Q 007620 559 LAGPSIPIIGE 569 (595)
Q Consensus 559 l~~~~~~~~~~ 569 (595)
+. ++.|..|.
T Consensus 95 i~-~D~~G~G~ 104 (377)
T 1k8q_A 95 WL-GNSRGNTW 104 (377)
T ss_dssp EE-CCCTTSTT
T ss_pred EE-ecCCCCCC
Confidence 99 88887664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.17 E-value=2.1 Score=44.23 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=40.8
Q ss_pred ccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEE-------ecCCcEEEEE
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-------VNNSTLLIFT 104 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~W-------spdg~~l~~~ 104 (595)
....+++| ++..|+++. + ....|+++|++++....+.......++ ....+.| +++|+.|++.
T Consensus 141 p~~la~dp~~~~~Lyv~~-~--------~~~~i~~ID~~~~~v~~l~~~~~~~~~-~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICY-D--------GHKAIQLIDLKNRMLSSPLNINTIPTN-RIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEEEEEE-E--------TEEEEEEEETTTTEEEEEECCTTSSCS-BEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCEEEEccCCCCEEEEEE-C--------CCCeEEEEECCCCEEEEEEccCccccC-CCcEEEEeecccccCCCCCEEEEE
Confidence 44668999 466655543 2 246799999999888776543221111 1346789 9999988776
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.079 Score=58.58 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=22.4
Q ss_pred ECCCCcE--EEEEEEcCCCCCCCCCCCCcEEEEec
Q 007620 488 QRKDGVP--LTATLYLPPGYDQSKDGPLPCLFWAY 520 (595)
Q Consensus 488 ~~~DG~~--i~g~l~~P~~~~~~k~y~lP~vv~~y 520 (595)
+.+||.+ |.++||+|.+. + ++|+||..|
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~---~--k~PvIv~~~ 208 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST---E--KLPVVMTAS 208 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS---S--CEEEEEEEC
T ss_pred cCCCCCeeeEEEEEEecCCC---C--cccEEEecC
Confidence 5789999 99999999862 3 449999654
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.048 Score=51.01 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=42.9
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcc-cCCCCchhHHHhccCeEEEeCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF-SGMTPTSSLIFLARRFAVLAGP 562 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~-~~~~~~~~q~la~~GY~Vl~~~ 562 (595)
.++++ .||.+|+++++.|.+.. ++. |+||++|+- +... ...+....+.|+++||.|+. +
T Consensus 3 ~~~~~-~~g~~l~~~~~~p~~~~--~~~--p~vvl~HG~--------------~~~~~~~~~~~~~~~l~~~g~~vi~-~ 62 (251)
T 2wtm_A 3 AMYID-CDGIKLNAYLDMPKNNP--EKC--PLCIIIHGF--------------TGHSEERHIVAVQETLNEIGVATLR-A 62 (251)
T ss_dssp EEEEE-ETTEEEEEEEECCTTCC--SSE--EEEEEECCT--------------TCCTTSHHHHHHHHHHHHTTCEEEE-E
T ss_pred ceEEe-cCCcEEEEEEEccCCCC--CCC--CEEEEEcCC--------------CcccccccHHHHHHHHHHCCCEEEE-e
Confidence 35665 59999999999997632 223 888887642 1110 00011224688999999999 8
Q ss_pred CCceeec
Q 007620 563 SIPIIGE 569 (595)
Q Consensus 563 ~~~~~~~ 569 (595)
|.|..|.
T Consensus 63 D~~G~G~ 69 (251)
T 2wtm_A 63 DMYGHGK 69 (251)
T ss_dssp CCTTSTT
T ss_pred cCCCCCC
Confidence 8887764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=93.79 E-value=2.4 Score=39.64 Aligned_cols=77 Identities=9% Similarity=-0.102 Sum_probs=45.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~ 83 (595)
+.|...|++ +|+..+-..++.. ...--.+++|++|+.+. .....++++|+++.+.. ++....
T Consensus 65 S~v~~vD~~----Tgkv~~~~~l~~~--~FgeGit~~g~~ly~lt---------w~~~~v~v~D~~t~~~~~ti~~~~-- 127 (262)
T 3nol_A 65 SSIRKVDIE----SGKTLQQIELGKR--YFGEGISDWKDKIVGLT---------WKNGLGFVWNIRNLRQVRSFNYDG-- 127 (262)
T ss_dssp EEEEEECTT----TCCEEEEEECCTT--CCEEEEEEETTEEEEEE---------SSSSEEEEEETTTCCEEEEEECSS--
T ss_pred ceEEEEECC----CCcEEEEEecCCc--cceeEEEEeCCEEEEEE---------eeCCEEEEEECccCcEEEEEECCC--
Confidence 346666777 6766544434432 33444677899886654 23578999999987743 332211
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....++|++.|+.+
T Consensus 128 ------eG~glt~dg~~L~~S 142 (262)
T 3nol_A 128 ------EGWGLTHNDQYLIMS 142 (262)
T ss_dssp ------CCCCEEECSSCEEEC
T ss_pred ------CceEEecCCCEEEEE
Confidence 123444677766553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=8.5 Score=41.13 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=41.8
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.|.+.+|+|+-- .....|++.++++...+.+....-. ....+..+++++.|++.
T Consensus 128 ~P~~Iavdp~~g~ly~tD~--------g~~~~I~r~~~dG~~~~~l~~~~~~----~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 128 QPRAIALDPSSGFMYWTDW--------GEVPKIERAGMDGSSRFIIINSEIY----WPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp CCCCEEEETTTTEEEEEEC--------SSSCEEEEEETTSCSCEEEECSSCS----SEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCeEEEecc--------CCCCEEEEEECCCCceEEEEeCCCC----CCcEEEEEccCCEEEEE
Confidence 4667899998888877632 1246899999987665555322110 23578888988888886
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.14 Score=47.78 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=41.9
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.+.+++++.||.+|.++++.|.+ . + +.|+||++|+..+. .+. ...+.....++|+.+ |.|+.
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-~--~--~~~~vv~~HG~~~~--------~~~---~~~~~~~~~~~l~~~-~~v~~- 64 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-Q--P--TKGVIVYIHGGGLM--------FGK---ANDLSPQYIDILTEH-YDLIQ- 64 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-S--S--CSEEEEEECCSTTT--------SCC---TTCSCHHHHHHHTTT-EEEEE-
T ss_pred ceEEEEecCCcEEEEEEEEccCC-C--C--CCCEEEEEECCccc--------CCc---hhhhHHHHHHHHHhC-ceEEe-
Confidence 35677889999999999999974 1 1 33999997753110 011 111111234677777 99999
Q ss_pred CCCc
Q 007620 562 PSIP 565 (595)
Q Consensus 562 ~~~~ 565 (595)
++.+
T Consensus 65 ~d~~ 68 (275)
T 3h04_A 65 LSYR 68 (275)
T ss_dssp ECCC
T ss_pred eccc
Confidence 6665
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.087 Score=51.52 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=45.1
Q ss_pred CceEEEEEECCCCc-EEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeE
Q 007620 480 LQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFA 557 (595)
Q Consensus 480 ~~~e~v~~~~~DG~-~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~ 557 (595)
+..+.+++++.||. +|.++++.|.+-. + +.|+||++|++.+ +.|....+ ......|++ .||.
T Consensus 49 ~~~~~~~i~~~~g~~~l~~~~~~P~~~~--~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~G~~ 112 (323)
T 1lzl_A 49 VSLRELSAPGLDGDPEVKIRFVTPDNTA--G--PVPVLLWIHGGGF--------AIGTAESS----DPFCVEVARELGFA 112 (323)
T ss_dssp EEEEEEEECCSTTCCCEEEEEEEESSCC--S--CEEEEEEECCSTT--------TSCCGGGG----HHHHHHHHHHHCCE
T ss_pred ceEEEEEecCCCCCceeEEEEEecCCCC--C--CCcEEEEECCCcc--------ccCChhhh----HHHHHHHHHhcCcE
Confidence 37788999999997 8999999997522 2 3499999875311 11111111 122456776 5999
Q ss_pred EEeCCCCce
Q 007620 558 VLAGPSIPI 566 (595)
Q Consensus 558 Vl~~~~~~~ 566 (595)
|+. ++.+.
T Consensus 113 Vv~-~d~rg 120 (323)
T 1lzl_A 113 VAN-VEYRL 120 (323)
T ss_dssp EEE-ECCCC
T ss_pred EEE-ecCCC
Confidence 999 55443
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.1 Score=50.65 Aligned_cols=69 Identities=10% Similarity=-0.061 Sum_probs=43.8
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.+...++..||.+|+++.+.|.+-.+ ++. |+||++|+- ..... .+....+.|+++||.|+.
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~-~~~--~~VvllHG~--------------g~~~~-~~~~~~~~L~~~G~~Vi~- 67 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVP-FKN--NTILIASGF--------------ARRMD-HFAGLAEYLSTNGFHVFR- 67 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC-CCS--CEEEEECTT--------------CGGGG-GGHHHHHHHHTTTCCEEE-
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCC-CCC--CEEEEecCC--------------ccCch-HHHHHHHHHHHCCCEEEE-
Confidence 55667788899999999998864211 122 778876631 11000 111235689999999999
Q ss_pred CCCcee-ec
Q 007620 562 PSIPII-GE 569 (595)
Q Consensus 562 ~~~~~~-~~ 569 (595)
+|.+.. |.
T Consensus 68 ~D~rGh~G~ 76 (305)
T 1tht_A 68 YDSLHHVGL 76 (305)
T ss_dssp ECCCBCC--
T ss_pred eeCCCCCCC
Confidence 888864 64
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.021 Score=54.62 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=43.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCC---CCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGY---DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~---~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~ 557 (595)
+.+.|.|+..||..+...+| |++. .+++ +.|+||++|++.+. ++. ...+....+.|+++||.
T Consensus 18 ~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~--~~p~vv~lHGgg~~---------~~~---~~~~~~~~~~l~~~G~~ 82 (283)
T 3bjr_A 18 QGMQVIKQKLTATCAQLTGY-LHQPDTNAHQT--NLPAIIIVPGGSYT---------HIP---VAQAESLAMAFAGHGYQ 82 (283)
T ss_dssp CSSEEEEEECTTSSCEEEEE-EC--------C--CEEEEEEECCSTTT---------CCC---HHHHHHHHHHHHTTTCE
T ss_pred CCcceEEeecCCCceeEEEe-cCCccccccCC--CCcEEEEECCCccc---------cCC---ccccHHHHHHHHhCCcE
Confidence 77889999999998999999 7752 1333 34999997743110 000 00011234688999999
Q ss_pred EEeCCCCce
Q 007620 558 VLAGPSIPI 566 (595)
Q Consensus 558 Vl~~~~~~~ 566 (595)
|+. ++.+.
T Consensus 83 v~~-~d~~g 90 (283)
T 3bjr_A 83 AFY-LEYTL 90 (283)
T ss_dssp EEE-EECCC
T ss_pred EEE-EeccC
Confidence 998 54443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=6.8 Score=39.42 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred ceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
-.++++||+.|+.... ...|.++|+.+++......... ..+..+.| |++.|+..
T Consensus 136 v~~~~~d~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~--~~~~l~sg 189 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHT----GSVLCLQY--DERVIITG 189 (435)
T ss_dssp EEEEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCS----SCEEEEEC--CSSEEEEE
T ss_pred EEEEEECCCEEEEEeC----------CCeEEEEeCCCCeEEEEEcCCC----CcEEEEEE--CCCEEEEE
Confidence 3467889998877653 2457777998887655433221 14556666 77766654
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.14 Score=49.59 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=43.9
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc-CeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~-GY~Vl 559 (595)
..+.+++++.|| +|.+++++|.+- + +.|+||++|++.+ +.|....| ....+.|+.+ ||.|+
T Consensus 47 ~~~~~~i~~~~g-~i~~~~~~p~~~---~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~v~ 108 (311)
T 2c7b_A 47 ETRDVHIPVSGG-SIRARVYFPKKA---A--GLPAVLYYHGGGF--------VFGSIETH----DHICRRLSRLSDSVVV 108 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSSC---S--SEEEEEEECCSTT--------TSCCTGGG----HHHHHHHHHHHTCEEE
T ss_pred eEEEEEecCCCC-cEEEEEEecCCC---C--CCcEEEEECCCcc--------cCCChhhh----HHHHHHHHHhcCCEEE
Confidence 788899999898 999999999752 1 2399999875311 11111111 1224577776 99999
Q ss_pred eCCCCce
Q 007620 560 AGPSIPI 566 (595)
Q Consensus 560 ~~~~~~~ 566 (595)
. ++.+.
T Consensus 109 ~-~d~rg 114 (311)
T 2c7b_A 109 S-VDYRL 114 (311)
T ss_dssp E-ECCCC
T ss_pred E-ecCCC
Confidence 8 55543
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.12 Score=50.94 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=40.1
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCC-CCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHh-ccCeE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGY-DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~-~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la-~~GY~ 557 (595)
+..+.+.+.+ |..+.+.+|+|.+. ++++ +.|+||++|++.+ +.+.+... .+....+.|+ ++||+
T Consensus 53 v~~~~v~~~~--~~~~~~~~~~P~~~~~~~~--~~p~vv~~HGgg~--------~~~~~~~~--~~~~~~~~la~~~g~~ 118 (338)
T 2o7r_A 53 VLTKDLALNP--LHNTFVRLFLPRHALYNSA--KLPLVVYFHGGGF--------ILFSAAST--IFHDFCCEMAVHAGVV 118 (338)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEGGGGGSSC--CEEEEEEECCSTT--------TSCCTTBH--HHHHHHHHHHHHHTCE
T ss_pred EEEEEEEecC--CCCeEEEEEeCCCCCcCCC--CceEEEEEcCCcC--------cCCCCCch--hHHHHHHHHHHHCCcE
Confidence 3667788865 56688889999864 2333 4599999875421 11111110 0011245677 78999
Q ss_pred EEe
Q 007620 558 VLA 560 (595)
Q Consensus 558 Vl~ 560 (595)
|+.
T Consensus 119 vv~ 121 (338)
T 2o7r_A 119 IAS 121 (338)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.37 E-value=5.7 Score=37.91 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=26.5
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (595)
......++|||+ | |++... .....|+.++.++|+.+.+...
T Consensus 73 ~p~gia~~~dG~-l-~vad~~------~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 73 KVSGLAFTSNGD-L-VATGWN------ADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEEEECTTSC-E-EEEEEC------TTSCEEEEEECTTSCEEEEEEC
T ss_pred CceeEEEcCCCc-E-EEEecc------CCcceEEEEcCCCCeEEEEEeC
Confidence 466778999998 4 444321 1234688888888887666443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.27 E-value=1.9 Score=40.34 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=42.7
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce-EecccCCCccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICL 85 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~ 85 (595)
|...|++ +|+..+-. ++.. ...--.+++|++|+.+. .....++++|+++.+. .++....+
T Consensus 77 v~~iD~~----Tgkv~~~~-l~~~--~FgeGit~~g~~Ly~lt---------w~~~~v~V~D~~Tl~~~~ti~~~~e--- 137 (268)
T 3nok_A 77 LRQLSLE----SAQPVWME-RLGN--IFAEGLASDGERLYQLT---------WTEGLLFTWSGMPPQRERTTRYSGE--- 137 (268)
T ss_dssp EEECCSS----CSSCSEEE-ECTT--CCEEEEEECSSCEEEEE---------SSSCEEEEEETTTTEEEEEEECSSC---
T ss_pred EEEEECC----CCcEEeEE-CCCC--cceeEEEEeCCEEEEEE---------ccCCEEEEEECCcCcEEEEEeCCCc---
Confidence 4555666 56554433 4543 33334677888886654 2357899999998774 34432221
Q ss_pred cccccceEEecCCcEEEEE
Q 007620 86 NAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~ 104 (595)
....++||+.|+.+
T Consensus 138 -----GwGLt~Dg~~L~vS 151 (268)
T 3nok_A 138 -----GWGLCYWNGKLVRS 151 (268)
T ss_dssp -----CCCEEEETTEEEEE
T ss_pred -----eeEEecCCCEEEEE
Confidence 22334678877664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.10 E-value=3.9 Score=37.79 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=34.1
Q ss_pred cceEEEEcC-CCCee-ecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEe
Q 007620 156 TAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-REL 224 (595)
Q Consensus 156 ~~~l~~~d~-~g~~~-~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l 224 (595)
.+.|.++|+ +|++. .+.-+..+......+++++|+..... ...++++|.++.+. ..+
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------------~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------------NHEGFVYDLATLTPRARF 101 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------------SSEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------------CCEEEEEECCcCcEEEEE
Confidence 467889999 77643 33322222223344457888777543 34899999986554 444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.07 E-value=2.4 Score=43.17 Aligned_cols=128 Identities=11% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCce--EecccCCCccccccccceEEe
Q 007620 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWV 95 (595)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Ws 95 (595)
++....+. ........+.|+|+|++|++.-.... .....+++++.+++-. +.+.... ....+.++
T Consensus 168 ~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~-----~~~~~v~~~~~~g~~~~~~~l~~~~------~p~giavd 234 (430)
T 3tc9_A 168 KEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNN-----NDRPNNYILTRESGFKVITELTKGQ------NCNGAETH 234 (430)
T ss_dssp TTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSC-----TTSEEEEEEEGGGTSCSEEEEEECS------SCCCEEEC
T ss_pred CCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCC-----cccceEEEEeCCCceeeeeeeccCC------CceEEEEe
Confidence 44444443 23334677899999997766543210 1123466666544322 2232111 23467788
Q ss_pred cCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecC--
Q 007620 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-- 172 (595)
Q Consensus 96 pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt-- 172 (595)
|++..|++.-. ...+|+++++++ ....+.
T Consensus 235 p~~g~lyv~d~------------------------------------------------~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 235 PINGELYFNSW------------------------------------------------NAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp TTTCCEEEEET------------------------------------------------TTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEC------------------------------------------------CCCEEEEEECCCCcEEEEEEc
Confidence 85444666411 124577777754 332221
Q ss_pred -CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 173 -TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 173 -~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
.......++++|+|++|+++... ...|++++.++
T Consensus 267 ~~~~~P~gia~~pdG~~lyv~d~~------------~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHPSGNYAYIVVVN------------QHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETT------------TTEEEEEEEET
T ss_pred CCCCcceeEEEcCCCCEEEEEECC------------CCEEEEEeCCc
Confidence 11234578999999988888542 23677766543
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.078 Score=49.84 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=44.4
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCc-ccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~-~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+.++ .||.+|.++++.|.+ ++. |+||++|+. +.. .........+.|+.+||.|+
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~----~~~--p~vv~~HG~--------------~~~~~~~~~~~~~~~l~~~G~~v~ 79 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG----EIY--DMAIIFHGF--------------TANRNTSLLREIANSLRDENIASV 79 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS----SSE--EEEEEECCT--------------TCCTTCHHHHHHHHHHHHTTCEEE
T ss_pred cceEEEec-cCCEEEEEEEEcCCC----CCC--CEEEEEcCC--------------CCCccccHHHHHHHHHHhCCcEEE
Confidence 45555555 699999999999874 123 899987742 111 01011123568999999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++.|..|.
T Consensus 80 ~-~d~~G~G~ 88 (270)
T 3pfb_A 80 R-FDFNGHGD 88 (270)
T ss_dssp E-ECCTTSTT
T ss_pred E-EccccccC
Confidence 9 88877664
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.2 Score=44.60 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=39.9
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
..||.+|++++|.|.+ +. |+||++|+.. +....|... ...+.|+++||.|+. ++.|..|
T Consensus 10 ~~~g~~l~~~~~~~~~-----~~--~~vv~~hG~~-----------~~~~~~~~~--~~~~~l~~~G~~v~~-~d~~g~g 68 (207)
T 3bdi_A 10 DVNGTRVFQRKMVTDS-----NR--RSIALFHGYS-----------FTSMDWDKA--DLFNNYSKIGYNVYA-PDYPGFG 68 (207)
T ss_dssp EETTEEEEEEEECCTT-----CC--EEEEEECCTT-----------CCGGGGGGG--THHHHHHTTTEEEEE-ECCTTST
T ss_pred eeCCcEEEEEEEeccC-----CC--CeEEEECCCC-----------CCccccchH--HHHHHHHhCCCeEEE-EcCCccc
Confidence 3599999999999976 22 8888877421 111112110 135789999999999 7777555
Q ss_pred c
Q 007620 569 E 569 (595)
Q Consensus 569 ~ 569 (595)
.
T Consensus 69 ~ 69 (207)
T 3bdi_A 69 R 69 (207)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.092 Score=54.14 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=35.4
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
.|.|++++|++- .+.|+||++|+ +.... ..+..+.||++||+|+. ++....+
T Consensus 160 ~l~~~l~~P~~~-----~~~P~Vv~lhG--------------~~~~~---~~~~a~~La~~Gy~Vla-~D~rG~~ 211 (446)
T 3hlk_A 160 RVRGTLFLPPEP-----GPFPGIVDMFG--------------TGGGL---LEYRASLLAGKGFAVMA-LAYYNYE 211 (446)
T ss_dssp TEEEEEEECSSS-----CCBCEEEEECC--------------SSCSC---CCHHHHHHHTTTCEEEE-ECCSSST
T ss_pred eEEEEEEeCCCC-----CCCCEEEEECC--------------CCcch---hhHHHHHHHhCCCEEEE-eccCCCC
Confidence 799999999752 24499998764 22111 12236899999999999 6655443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=92.81 E-value=5 Score=37.04 Aligned_cols=77 Identities=9% Similarity=-0.017 Sum_probs=46.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~ 83 (595)
+.|...|++ +|+..+-..++.. ...--.+++|++|+-+.- ....++++|.++.+.. ++....
T Consensus 43 S~v~~vD~~----tgkv~~~~~l~~~--~fgeGi~~~~~~ly~ltw---------~~~~v~v~D~~tl~~~~ti~~~~-- 105 (243)
T 3mbr_X 43 SSVRKVDLE----TGRILQRAEVPPP--YFGAGIVAWRDRLIQLTW---------RNHEGFVYDLATLTPRARFRYPG-- 105 (243)
T ss_dssp CEEEEEETT----TCCEEEEEECCTT--CCEEEEEEETTEEEEEES---------SSSEEEEEETTTTEEEEEEECSS--
T ss_pred ceEEEEECC----CCCEEEEEeCCCC--cceeEEEEeCCEEEEEEe---------eCCEEEEEECCcCcEEEEEeCCC--
Confidence 456677887 7776655445544 334446677888766542 3578999999987643 332211
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....++|++.|+.+
T Consensus 106 ------~Gwglt~dg~~L~vS 120 (243)
T 3mbr_X 106 ------EGWALTSDDSHLYMS 120 (243)
T ss_dssp ------CCCEEEECSSCEEEE
T ss_pred ------CceEEeeCCCEEEEE
Confidence 123344677776664
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.08 Score=54.14 Aligned_cols=52 Identities=25% Similarity=0.373 Sum_probs=35.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceee
Q 007620 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
.|.|++++|++- + +.|+||++|+ +...+ ..+..+.||++||+|+. ++.+..+
T Consensus 144 ~l~~~l~~P~~~---~--~~P~Vv~~hG--------------~~~~~---~~~~a~~La~~Gy~V~a-~D~rG~g 195 (422)
T 3k2i_A 144 RVRATLFLPPGP---G--PFPGIIDIFG--------------IGGGL---LEYRASLLAGHGFATLA-LAYYNFE 195 (422)
T ss_dssp TEEEEEEECSSS---C--CBCEEEEECC--------------TTCSC---CCHHHHHHHTTTCEEEE-EECSSST
T ss_pred cEEEEEEcCCCC---C--CcCEEEEEcC--------------CCcch---hHHHHHHHHhCCCEEEE-EccCCCC
Confidence 799999999862 1 3499998764 22211 12236899999999999 5554433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.38 E-value=3.5 Score=38.60 Aligned_cols=129 Identities=9% Similarity=-0.011 Sum_probs=65.6
Q ss_pred ceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccC
Q 007620 157 AQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDI 233 (595)
Q Consensus 157 ~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~ 233 (595)
.+|.++|+ +|+ .+.+..+..+ .....++|++|+..... ...++++|.++.+. ..+.-.
T Consensus 75 g~v~~iD~~Tgkv~~~~l~~~~F-geGit~~g~~Ly~ltw~------------~~~v~V~D~~Tl~~~~ti~~~------ 135 (268)
T 3nok_A 75 GTLRQLSLESAQPVWMERLGNIF-AEGLASDGERLYQLTWT------------EGLLFTWSGMPPQRERTTRYS------ 135 (268)
T ss_dssp TEEEECCSSCSSCSEEEECTTCC-EEEEEECSSCEEEEESS------------SCEEEEEETTTTEEEEEEECS------
T ss_pred CEEEEEECCCCcEEeEECCCCcc-eeEEEEeCCEEEEEEcc------------CCEEEEEECCcCcEEEEEeCC------
Confidence 34778888 674 3334223322 22345578888777542 24899999886554 444321
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccc--cCc---cccceeecC
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDL---RFRSVSWCD 308 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~--~~~---~~~~~~wsp 308 (595)
.......+|++ .|+.. + ..+.++++|. .+......+.- ... ....+.|.
T Consensus 136 ----------~eGwGLt~Dg~-~L~vS---d---------Gs~~l~~iDp--~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 136 ----------GEGWGLCYWNG-KLVRS---D---------GGTMLTFHEP--DGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp ----------SCCCCEEEETT-EEEEE---C---------SSSEEEEECT--TTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred ----------CceeEEecCCC-EEEEE---C---------CCCEEEEEcC--CCCeEEEEEEeCCCCcccccccccEEe-
Confidence 11223345665 24332 1 2346777774 33222222221 111 12234566
Q ss_pred CCcEEEEEEeecccceEEEEEeCCCC
Q 007620 309 DSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 309 Dg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
||..++ ..+. ...|.+||++++
T Consensus 190 dG~lya-nvw~---s~~I~vIDp~TG 211 (268)
T 3nok_A 190 NGVIYA-NIWH---SSDVLEIDPATG 211 (268)
T ss_dssp TTEEEE-EETT---CSEEEEECTTTC
T ss_pred CCEEEE-EECC---CCeEEEEeCCCC
Confidence 675333 3232 238999999984
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.079 Score=50.74 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=31.2
Q ss_pred ceEEEEEECCC-CcEEEEEEEcCCCCCCCCCCCCcEEEEe
Q 007620 481 QKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWA 519 (595)
Q Consensus 481 ~~e~v~~~~~D-G~~i~g~l~~P~~~~~~k~y~lP~vv~~ 519 (595)
..+.+++++.+ |.++..+||+|++|+++++| |+|++.
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~~y--Pvly~l 49 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGY--PILYML 49 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCE--EEEEES
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCCCC--CEEEEe
Confidence 78889999886 68999999999999887766 987653
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.15 Score=49.86 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=45.7
Q ss_pred ceEEE-EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMI-KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v-~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
..+.+ .+...||.+|.++++.|.+ + +.|+||++|+. +.... .+....+.|+.+||.|+
T Consensus 33 ~~~~~~~~~~~dg~~l~~~~~~p~~----~--~~p~vv~~HG~--------------~~~~~-~~~~~~~~l~~~g~~vi 91 (342)
T 3hju_A 33 PYQDLPHLVNADGQYLFCRYWKPTG----T--PKALIFVSHGA--------------GEHSG-RYEELARMLMGLDLLVF 91 (342)
T ss_dssp BTTSSCEEECTTSCEEEEEEECCSS----C--CSEEEEEECCT--------------TCCGG-GGHHHHHHHHTTTEEEE
T ss_pred ccccCceEEccCCeEEEEEEeCCCC----C--CCcEEEEECCC--------------Ccccc-hHHHHHHHHHhCCCeEE
Confidence 34444 7788999999999998874 1 23899987642 11111 11123578899999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++.+..|.
T Consensus 92 ~-~D~~G~G~ 100 (342)
T 3hju_A 92 A-HDHVGHGQ 100 (342)
T ss_dssp E-ECCTTSTT
T ss_pred E-EcCCCCcC
Confidence 9 88887664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=91.90 E-value=8.1 Score=36.04 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=27.9
Q ss_pred eEEEEcCCCCeeecCC---CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc
Q 007620 158 QLVLGSLDGTAKDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (595)
Q Consensus 158 ~l~~~d~~g~~~~lt~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 219 (595)
.|++++.+++...+.. ......+.++++|+ |+++... ...|++++.++.
T Consensus 168 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~------------~~~i~~~~~~g~ 219 (300)
T 2qc5_A 168 SIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM------------GNKIGRITTTGE 219 (300)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT------------TTEEEEECTTCC
T ss_pred eEEEECCCCcEEEeeCCCCCCCcceEEECCCCC-EEEEccC------------CCEEEEEcCCCc
Confidence 4666666554443321 12345788899884 5555432 236888888443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.82 E-value=8.2 Score=35.93 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=28.4
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l 224 (595)
....++|.|+++.|+++.+.. ..|+.+|..+...+.+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~------------~~I~~ld~~g~v~~~i 64 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP------------AAIVEMTTNGDLIRTI 64 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT------------EEEEEEETTCCEEEEE
T ss_pred CcceeEEeCCCCEEEEEECCC------------CeEEEEeCCCCEEEEE
Confidence 356899999999998886542 4799999987666665
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.27 Score=46.55 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=43.6
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
.++..||.+|+++++.|.+ + +.|+||++|+. ..... .+....+.|+.+||.|+. ++.|
T Consensus 21 ~~~~~~g~~l~~~~~~~~~----~--~~~~vv~~hG~--------------~~~~~-~~~~~~~~l~~~g~~v~~-~d~~ 78 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG----T--PKALIFVSHGA--------------GEHSG-RYEELARMLMGLDLLVFA-HDHV 78 (303)
T ss_dssp EEECTTSCEEEEEEECCSS----C--CSEEEEEECCT--------------TCCGG-GGHHHHHHHHHTTEEEEE-ECCT
T ss_pred eEecCCCeEEEEEEeccCC----C--CCeEEEEECCC--------------Cchhh-HHHHHHHHHHhCCCcEEE-eCCC
Confidence 7788999999999998874 2 23899987642 11101 111235789999999999 8888
Q ss_pred eeec
Q 007620 566 IIGE 569 (595)
Q Consensus 566 ~~~~ 569 (595)
..|.
T Consensus 79 G~G~ 82 (303)
T 3pe6_A 79 GHGQ 82 (303)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 7765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=4.7 Score=39.67 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=83.3
Q ss_pred eEEEecCCCCCCCCceeee--cC-CC--CCcccceEEcc--CCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc
Q 007620 7 IGIHRLLPDDSLGPEKEVH--GY-PD--GAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt--~~-~~--~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (595)
||++|++. .+++.++|. .. +. ........+.+ ||+.-.|+.+.... ....+||.++.+++..+.+..
T Consensus 85 I~~~d~~~--~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~----~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 85 ILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS----SSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp EEEEETTS--SSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT----CCEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCC--CCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC----CCeEEEEEEECCCCEEEEEec
Confidence 88888862 234555554 21 11 11233445544 67755666654211 235678888887776665544
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceE
Q 007620 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (595)
Q Consensus 80 ~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (595)
.....++ ........++|+ ++++...- - ++.. ...... .. . .....|
T Consensus 159 ~~g~~~~-~pND~~v~~~G~-fyvt~~~~-f----------------td~~----~~~~e~-~~----~-----~~~g~v 205 (355)
T 3sre_A 159 IRHKLLP-SVNDIVAVGPEH-FYATNDHY-F----------------IDPY----LKSWEM-HL----G-----LAWSFV 205 (355)
T ss_dssp ECCTTCS-SEEEEEEEETTE-EEEEESCS-C----------------SSHH----HHHHHH-HT----T-----CCCEEE
T ss_pred cccCCCC-CCceEEEeCCCC-EEecCCcE-e----------------CCcc----cccchh-hc----c-----CCccEE
Confidence 3332111 234778888887 33331100 0 0000 000000 00 0 024678
Q ss_pred EEEcCCCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 160 VLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 160 ~~~d~~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
|.++. ++.+.+... ..-..++|||||++|+++... ...|++++++
T Consensus 206 yr~d~-~~~~~~~~~l~~pNGia~spDg~~lYvadt~------------~~~I~~~~~~ 251 (355)
T 3sre_A 206 TYYSP-NDVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYEKH 251 (355)
T ss_dssp EEECT-TCCEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEEC
T ss_pred EEEEC-CeEEEeecCCcccCcceECCCCCEEEEEeCC------------CCeEEEEEEC
Confidence 88876 355544332 234589999999999998653 2378888865
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.28 Score=47.23 Aligned_cols=60 Identities=7% Similarity=0.087 Sum_probs=35.4
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.+.+.|. +..+...+|+|.+-. + +.|+||++|++-+. .+.... .....+.|+++||+|+.
T Consensus 58 ~~~i~y~---~~~~~~~~~~p~~~~--~--~~p~vv~~HGgg~~--------~~~~~~----~~~~~~~l~~~G~~v~~ 117 (303)
T 4e15_A 58 VDHLRYG---EGRQLVDVFYSEKTT--N--QAPLFVFVHGGYWQ--------EMDMSM----SCSIVGPLVRRGYRVAV 117 (303)
T ss_dssp EEEEECS---STTCEEEEEECTTCC--T--TCCEEEEECCSTTT--------SCCGGG----SCTTHHHHHHTTCEEEE
T ss_pred eeeeccC---CCCcEEEEEecCCCC--C--CCCEEEEECCCcCc--------CCChhH----HHHHHHHHHhCCCEEEE
Confidence 4455564 445567778887422 2 44999998753110 111111 12235789999999998
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=5.3 Score=38.42 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=38.5
Q ss_pred ccceEEcc-CCCEEEEEEeccccc--------ccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEED--------NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~--------~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.....+.| ||+ |++........ .+......|++++.++++.+.+..... ....+.|+|||+.|++
T Consensus 128 p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-----~p~gia~~~dg~~lyv 201 (322)
T 2fp8_A 128 LYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH-----VPGGAEVSADSSFVLV 201 (322)
T ss_dssp EEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES-----CCCEEEECTTSSEEEE
T ss_pred cceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc-----cCcceEECCCCCEEEE
Confidence 45678999 895 54443210000 000123679999998887655422111 2346899999998877
Q ss_pred E
Q 007620 104 T 104 (595)
Q Consensus 104 ~ 104 (595)
.
T Consensus 202 ~ 202 (322)
T 2fp8_A 202 A 202 (322)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.46 Score=44.34 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=37.9
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (595)
...++-.||..+...++.|.+ + +. |+||++|++-+ ..+....| ....+.|+++||.|+. ++
T Consensus 40 ~~~i~~~~~~~~~~~~~~p~~--~--~~--p~vv~~HGgg~--------~~~~~~~~----~~~~~~l~~~G~~v~~-~d 100 (262)
T 2pbl_A 40 RLNLSYGEGDRHKFDLFLPEG--T--PV--GLFVFVHGGYW--------MAFDKSSW----SHLAVGALSKGWAVAM-PS 100 (262)
T ss_dssp EEEEESSSSTTCEEEEECCSS--S--CS--EEEEEECCSTT--------TSCCGGGC----GGGGHHHHHTTEEEEE-EC
T ss_pred ccccccCCCCCceEEEEccCC--C--CC--CEEEEEcCccc--------ccCChHHH----HHHHHHHHhCCCEEEE-eC
Confidence 334444567777888999976 2 23 99999875310 00111111 1235788999999999 55
Q ss_pred Cc
Q 007620 564 IP 565 (595)
Q Consensus 564 ~~ 565 (595)
.+
T Consensus 101 ~~ 102 (262)
T 2pbl_A 101 YE 102 (262)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.22 Score=46.41 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=44.3
Q ss_pred ceEEEEE-ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKY-QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~-~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+.+.+++ ++.||.+|..+.+.|.+ + +.|+||++|+.. +....+. .....++++++||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~--~----~~~~vv~~HG~~-----------~~~~~~~--~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ--D----ERPTCIWLGGYR-----------SDMTGTK--ALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS--T----TSCEEEEECCTT-----------CCTTSHH--HHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC--C----CCCeEEEECCCc-----------cccccch--HHHHHHHHHhCCCcEE
Confidence 5566666 67799999998887653 2 128899877420 1111110 0112467889999999
Q ss_pred eCCCCceeecC
Q 007620 560 AGPSIPIIGEG 570 (595)
Q Consensus 560 ~~~~~~~~~~~ 570 (595)
. ++.|..|.-
T Consensus 71 ~-~d~~G~G~s 80 (270)
T 3llc_A 71 R-FDYSGHGAS 80 (270)
T ss_dssp E-ECCTTSTTC
T ss_pred E-eccccCCCC
Confidence 9 888876653
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.16 Score=51.49 Aligned_cols=63 Identities=8% Similarity=-0.093 Sum_probs=39.2
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeE--
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-- 557 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~-- 557 (595)
+.+.++|.+. .|.++..+||+|.+++ +++| |+|++.|++ -+..........+.|+++|++
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~~-~~~~--PvlvllHG~--------------~~~~~~~~~~~~~~l~~~g~~~p 229 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEER--PLAVLLDGE--------------FWAQSMPVWPVLTSLTHRQQLPP 229 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCC--CEEEESSHH--------------HHHHTSCCHHHHHHHHHTTSSCS
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCCC-CCCC--CEEEEeCCH--------------HHhhcCcHHHHHHHHHHcCCCCC
Confidence 6778888775 7889999999999875 3445 999997642 110011111235788999985
Q ss_pred --EEe
Q 007620 558 --VLA 560 (595)
Q Consensus 558 --Vl~ 560 (595)
|+.
T Consensus 230 ~iVV~ 234 (403)
T 3c8d_A 230 AVYVL 234 (403)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 777
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=90.02 E-value=0.14 Score=50.11 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=18.5
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
..|.+++|.|.+- + +.|+||++|++
T Consensus 65 ~~i~~~~~~p~~~---~--~~p~vv~~HGG 89 (322)
T 3fak_A 65 AGCAAEWVRAPGC---Q--AGKAILYLHGG 89 (322)
T ss_dssp TTEEEEEEECTTC---C--TTCEEEEECCS
T ss_pred CCeEEEEEeCCCC---C--CccEEEEEcCC
Confidence 4599999999752 2 34999998753
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=89.85 E-value=0.59 Score=45.22 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=38.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHh-ccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la-~~GY~Vl 559 (595)
..+.+++++.|| .|.+++| |. . + +.|+||++|++.+ +.|....+ ......|| ..||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~--~--~--~~p~vv~~HGgg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ--K--P--DSPVLVYYHGGGF--------VICSIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES--S--S--SEEEEEEECCSTT--------TSCCTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC--C--C--CceEEEEECCccc--------ccCChhHh----HHHHHHHHHHhCCEEE
Confidence 578889998898 8999999 42 1 2 3499999875311 11221111 11245677 6799999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 115 ~ 115 (311)
T 1jji_A 115 S 115 (311)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=89.03 E-value=0.16 Score=45.57 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=39.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCceeec
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
.||.+|+.+++.|.+ . +.. |+||++|+.. +....|... ...+.|+++||.|+. ++.+..|.
T Consensus 14 ~~g~~l~~~~~~p~~-~--~~~--~~vv~~hG~~-----------~~~~~~~~~--~~~~~l~~~G~~v~~-~d~~g~g~ 74 (210)
T 1imj_A 14 VQGQALFFREALPGS-G--QAR--FSVLLLHGIR-----------FSSETWQNL--GTLHRLAQAGYRAVA-IDLPGLGH 74 (210)
T ss_dssp ETTEEECEEEEECSS-S--CCS--CEEEECCCTT-----------CCHHHHHHH--THHHHHHHTTCEEEE-ECCTTSGG
T ss_pred eCCeEEEEEEeCCCC-C--CCC--ceEEEECCCC-----------Cccceeecc--hhHHHHHHCCCeEEE-ecCCCCCC
Confidence 489999999999975 2 123 8889876420 111111100 025689999999999 88776664
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=0.43 Score=50.44 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhc-cCeEEEe
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLA 560 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~-~GY~Vl~ 560 (595)
+.|.+.+. ++.|.+..+++ ++|+|||+|+|.|. .|+... +.. ..||+ +||+|+.
T Consensus 95 ~edcl~ln--v~~P~~~~~~~--~~Pv~v~iHGG~~~--------~g~~~~-----~~~-~~la~~~g~vvv~ 149 (542)
T 2h7c_A 95 SEDCLYLN--IYTPADLTKKN--RLPVMVWIHGGGLM--------VGAAST-----YDG-LALAAHENVVVVT 149 (542)
T ss_dssp ESCCCEEE--EEECSCTTSCC--CEEEEEEECCSTTT--------SCCSTT-----SCC-HHHHHHHTCEEEE
T ss_pred CCCCcEEE--EEECCCCCCCC--CCCEEEEECCCccc--------CCCccc-----cCH-HHHHhcCCEEEEe
Confidence 56887765 77898765544 45999998865432 232221 111 34554 7999998
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.7 Score=45.54 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=39.2
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCC------------CCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchh
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQ------------SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS 548 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~------------~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~ 548 (595)
..+.+.+.+ |..|..++|+|.+... ....+.|+||++|++.+ ..|..... .+....
T Consensus 71 ~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~--------~~g~~~~~--~~~~~~ 138 (351)
T 2zsh_A 71 FSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSF--------AHSSANSA--IYDTLC 138 (351)
T ss_dssp EEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTT--------TSCCTTBH--HHHHHH
T ss_pred eEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcC--------cCCCCcch--hHHHHH
Confidence 556677764 5668899999987520 01125599999875311 11111100 001124
Q ss_pred HHHh-ccCeEEEe
Q 007620 549 LIFL-ARRFAVLA 560 (595)
Q Consensus 549 q~la-~~GY~Vl~ 560 (595)
+.|| ++||+|+.
T Consensus 139 ~~la~~~g~~vv~ 151 (351)
T 2zsh_A 139 RRLVGLCKCVVVS 151 (351)
T ss_dssp HHHHHHHTSEEEE
T ss_pred HHHHHHcCCEEEE
Confidence 6778 78999998
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=87.43 E-value=25 Score=35.12 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=38.0
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|.+.|+. +++...... .....+....| ||+.|+.... ...|.++++.+++.........
T Consensus 154 ~i~iwd~~----~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~--- 213 (435)
T 1p22_A 154 TIKIWDKN----TLECKRILT-GHTGSVLCLQY--DERVIITGSS----------DSTVRVWDVNTGEMLNTLIHHC--- 213 (435)
T ss_dssp CEEEEESS----SCCEEEEEC-CCSSCEEEEEC--CSSEEEEEET----------TSCEEEEESSSCCEEEEECCCC---
T ss_pred eEEEEeCC----CCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcC----------CCeEEEEECCCCcEEEEEcCCC---
Confidence 47788887 555443331 12223444444 8887765542 2457777988887544332211
Q ss_pred cccccceEEec
Q 007620 86 NAVFGSFVWVN 96 (595)
Q Consensus 86 ~~~~~~~~Wsp 96 (595)
..+..+.|++
T Consensus 214 -~~v~~l~~~~ 223 (435)
T 1p22_A 214 -EAVLHLRFNN 223 (435)
T ss_dssp -SCEEEEECCT
T ss_pred -CcEEEEEEcC
Confidence 1355667753
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=87.19 E-value=14 Score=37.47 Aligned_cols=49 Identities=10% Similarity=-0.036 Sum_probs=29.9
Q ss_pred ceEEEEcCC-CCe-eecC-C--CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCC
Q 007620 157 AQLVLGSLD-GTA-KDFG-T--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 157 ~~l~~~d~~-g~~-~~lt-~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
.+|++++.+ |+. +.+. . ......++++|||++|+++... ...|++++.+
T Consensus 250 ~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~------------~~~I~~~~~d 303 (433)
T 4hw6_A 250 AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG------------KHCIYRVDYN 303 (433)
T ss_dssp SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT------------TTEEEEEEBC
T ss_pred CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC------------CCEEEEEeCC
Confidence 457777774 654 3331 1 1122358999999988888542 2367776654
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.19 E-value=1.1 Score=42.52 Aligned_cols=69 Identities=7% Similarity=-0.003 Sum_probs=42.7
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.++++. ||..+...++.+..-++ +.|+||++|+. +.... .+....+.|+.+||.|+.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~p~vv~~hG~--------------~~~~~-~~~~~~~~l~~~g~~v~~ 78 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPKKA----NGRTILLMHGK--------------NFCAG-TWERTIDVLADAGYRVIA 78 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCSSC----CSCEEEEECCT--------------TCCGG-GGHHHHHHHHHTTCEEEE
T ss_pred cceeEEEec-CCCCeeEEEeecCCCCC----CCCeEEEEcCC--------------CCcch-HHHHHHHHHHHCCCeEEE
Confidence 677788865 77777666664433122 22888887642 11111 111235789999999999
Q ss_pred CCCCceeecC
Q 007620 561 GPSIPIIGEG 570 (595)
Q Consensus 561 ~~~~~~~~~~ 570 (595)
++.|..|.-
T Consensus 79 -~d~~G~G~s 87 (315)
T 4f0j_A 79 -VDQVGFCKS 87 (315)
T ss_dssp -ECCTTSTTS
T ss_pred -eecCCCCCC
Confidence 888877653
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.00 E-value=0.54 Score=47.50 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=40.9
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.+.++. +|.+|+++++.| + + + +.|+||++|+. ......+.......++++||.|+.
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~~~-~-~--~--~~p~vv~~HG~--------------~~~~~~~~~~~~~~~~~~g~~vi~ 192 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAIIS-E-D--K--AQDTLIVVGGG--------------DTSREDLFYMLGYSGWEHDYNVLM 192 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEECC-S-S--S--CCCEEEEECCS--------------SCCHHHHHHHTHHHHHHTTCEEEE
T ss_pred CcEEEEEeE-CCeEEEEEEEcC-C-C--C--CCCEEEEECCC--------------CCCHHHHHHHHHHHHHhCCcEEEE
Confidence 567777775 789999999943 2 1 2 23899997642 110000001112366789999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++.|..|.
T Consensus 193 -~D~~G~G~ 200 (405)
T 3fnb_A 193 -VDLPGQGK 200 (405)
T ss_dssp -ECCTTSTT
T ss_pred -EcCCCCcC
Confidence 77776553
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=85.72 E-value=1.1 Score=42.66 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=40.1
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+.+.++|.+. +|.+++.+ |+|.+ + |+||+.|+... .+....|... ....++++++||+|+
T Consensus 10 ~~~~~~~~S~~~~~~~~~~-~~P~~-------~-p~vvllHG~~~---------~~~~~~w~~~-~~~~~~~~~~~~~vv 70 (280)
T 1r88_A 10 PYENLMVPSPSMGRDIPVA-FLAGG-------P-HAVYLLDAFNA---------GPDVSNWVTA-GNAMNTLAGKGISVV 70 (280)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS-------S-SEEEEECCSSC---------CSSSCHHHHT-SCHHHHHTTSSSEEE
T ss_pred CEEEEEEECcccCCcceEE-EeCCC-------C-CEEEEECCCCC---------CCChhhhhhc-ccHHHHHhcCCeEEE
Confidence 6788898875 78999999 78875 1 78888764200 0000111111 012478888999999
Q ss_pred eCCCC
Q 007620 560 AGPSI 564 (595)
Q Consensus 560 ~~~~~ 564 (595)
. |+.
T Consensus 71 ~-pd~ 74 (280)
T 1r88_A 71 A-PAG 74 (280)
T ss_dssp E-ECC
T ss_pred E-ECC
Confidence 9 544
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=84.37 E-value=1.2 Score=41.57 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=40.1
Q ss_pred ceEEEEEECC--CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEE
Q 007620 481 QKEMIKYQRK--DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (595)
Q Consensus 481 ~~e~v~~~~~--DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~V 558 (595)
..+.+++... +|.. .+.|++|..... + +.|+||++|+. ++... .+....+.|+++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~-~~~l~~p~~~~~-~--~~p~vv~~HG~------------~~~~~---~~~~~~~~l~~~G~~v 84 (262)
T 1jfr_A 24 ATSQTSVSSLVASGFG-GGTIYYPTSTAD-G--TFGAVVISPGF------------TAYQS---SIAWLGPRLASQGFVV 84 (262)
T ss_dssp CEEEEEECTTTCSSSC-CEEEEEESCCTT-C--CEEEEEEECCT------------TCCGG---GTTTHHHHHHTTTCEE
T ss_pred CccceEecceeccCCC-ceeEEecCCCCC-C--CCCEEEEeCCc------------CCCch---hHHHHHHHHHhCCCEE
Confidence 5666667665 4543 678889976322 2 34999998742 11111 1123457899999999
Q ss_pred EeCCCCc
Q 007620 559 LAGPSIP 565 (595)
Q Consensus 559 l~~~~~~ 565 (595)
+. ++.+
T Consensus 85 ~~-~d~~ 90 (262)
T 1jfr_A 85 FT-IDTN 90 (262)
T ss_dssp EE-ECCS
T ss_pred EE-eCCC
Confidence 99 6654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.33 E-value=22 Score=36.59 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=13.7
Q ss_pred eeeEECCCCCeEEEEEc
Q 007620 178 TAVEPSPDQKYVLITSM 194 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~ 194 (595)
..++|+|+|+.|+++-.
T Consensus 313 ~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred eEEEEcCCCCEEEEEeC
Confidence 47899999998877753
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=0.61 Score=44.99 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCC-----CCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQ-----SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR 554 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~-----~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~ 554 (595)
+...+++.+. =|.++.-.||+|++|+. +|+| |||.+.|+. .+....|.... ...++++..
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~--PVLYlLhG~-----------~~~~~~w~~~~-~~~~~~~~~ 78 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRI--PTVFYLSGL-----------TCTPDNASEKA-FWQFQADKY 78 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CB--CEEEEECCT-----------TCCHHHHHHHS-CHHHHHHHH
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCc--CEEEEECCC-----------CCChHHHHHhc-hHhHHHHHc
Confidence 4555666654 67899999999999853 4445 999997742 12222232111 112466667
Q ss_pred CeEEEe
Q 007620 555 RFAVLA 560 (595)
Q Consensus 555 GY~Vl~ 560 (595)
|.+|++
T Consensus 79 ~~~~v~ 84 (299)
T 4fol_A 79 GFAIVF 84 (299)
T ss_dssp TCEEEE
T ss_pred Cchhhc
Confidence 999998
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.98 E-value=18 Score=39.26 Aligned_cols=157 Identities=9% Similarity=-0.012 Sum_probs=85.8
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCC--------ce
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--------EA 74 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g--------~~ 74 (595)
|.+.+|+.++.+ .+++.++|. ++. ...+.++++|..++++.......+..-....|.+++++++ +.
T Consensus 267 ~~~~~~~~~~~~--~~~~~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (711)
T 4hvt_A 267 YNYDNYILDTKY--KNLKLQKIN-MPS---DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSL 340 (711)
T ss_dssp SCEEEEEEECSS--SSCEEEECC-SCT---TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTC
T ss_pred CceeEEEEcCCC--CCCcceEee-cCC---cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccc
Confidence 347788888752 235555664 343 3345677777544444321000000013567999998764 22
Q ss_pred Ee-cccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEE
Q 007620 75 KP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (595)
Q Consensus 75 ~~-lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 153 (595)
+. ++...+ ..+..+.|+.+ .|++... .+
T Consensus 341 ~~~~~~~~~----~~l~~~~~~~~--~l~~~~~---------------------~~------------------------ 369 (711)
T 4hvt_A 341 KILFTPTAN----EVFNFISTTKD--RVFLATY---------------------DN------------------------ 369 (711)
T ss_dssp EEEECCCTT----EEEEEEEECSS--CEEEEEE---------------------ET------------------------
T ss_pred eEEECCCCC----CeEEEEEEECC--EEEEEEE---------------------EC------------------------
Confidence 33 333222 13457888876 3444321 00
Q ss_pred eecceEEEEcC-CCC--eee-cCCC--CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccC
Q 007620 154 YTTAQLVLGSL-DGT--AKD-FGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (595)
Q Consensus 154 ~~~~~l~~~d~-~g~--~~~-lt~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~ 227 (595)
...+|+++++ +|+ .+. +.-+ ..+...+.+++++.+++....-. .+..++.+|+. ++.+.+...
T Consensus 370 -~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~---------~P~~~~~~d~~-~~~~~l~~~ 438 (711)
T 4hvt_A 370 -VVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSI---------VPPTIYLWVKT-HELKIIRKA 438 (711)
T ss_dssp -TEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSS---------SCCEEEEECTT-SCEEEEECC
T ss_pred -CEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCC---------CCCEEEEEeCC-CcEEEEecC
Confidence 1356788887 563 445 4322 34455677899988887754321 25689999988 666666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=83.71 E-value=37 Score=36.58 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=35.4
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCC-----CcccceEEcc---CCC--EEEEEEecccccccCCCceEEEEEECCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDG-----AKINFVSWSP---DGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~-----~~~~~~~~SP---DG~--~laf~~~~~~~~~~~~~~~~L~v~d~~~g~ 73 (595)
...|+-+|.. +|+.+.-.++... ...+.|.+.. ||+ .+++... ....||++|.++|+
T Consensus 282 ~~sv~AlD~~----TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~---------~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 282 LASIVALDPD----TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP---------KNGFFFVLDRTNGK 348 (677)
T ss_dssp TTEEEEECTT----TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCC
T ss_pred eEEEEEEECC----CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC---------CCCEEEEEECCCCC
Confidence 3458888887 7877654433221 1134555544 785 4444432 34789999999998
Q ss_pred eE
Q 007620 74 AK 75 (595)
Q Consensus 74 ~~ 75 (595)
..
T Consensus 349 ~l 350 (677)
T 1kb0_A 349 FI 350 (677)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=0.32 Score=48.84 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=31.7
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCcee
Q 007620 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (595)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (595)
..+++.+..|.. +++ +.|+||+.|+. ++. ...+....+.||++||+|+. ++.+..
T Consensus 82 ~~~p~~~~~P~~--~~~--~~P~Vv~~HG~------------~~~---~~~~~~~a~~La~~Gy~V~~-~d~~g~ 136 (383)
T 3d59_A 82 MTTPANWNSPLR--PGE--KYPLVVFSHGL------------GAF---RTLYSAIGIDLASHGFIVAA-VEHRDR 136 (383)
T ss_dssp CEESSEETCCBC--CSS--CEEEEEEECCT------------TCC---TTTTHHHHHHHHHTTCEEEE-ECCCSS
T ss_pred eeeccccCCCcc--cCC--CCCEEEEcCCC------------CCC---chHHHHHHHHHHhCceEEEE-eccCCC
Confidence 445544444432 233 44999997742 111 11112346899999999999 666543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=82.42 E-value=38 Score=32.98 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=37.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc--cccccceEEecC---CcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL--NAVFGSFVWVNN---STLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~--~~~~~~~~Wspd---g~~l~~~ 104 (595)
......|.|||+ | |+..+ ....|++++.++|+...+...+.... ..+...++++|| +..|++.
T Consensus 33 ~P~~ia~~pdG~-l-lVter--------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 33 SPWGLAPLPGGD-L-LVSSR--------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SEEEEEECTTSC-E-EEEET--------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEEcCCCc-E-EEEEe--------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 456779999997 4 44432 24689999877777655533221110 112347889986 4556554
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=82.38 E-value=2.3 Score=39.94 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=32.4
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.++-.+|.++ .+|.|.+ + +.|+|||+|++-| +.|+...+ .......+++.||.|+.
T Consensus 8 ~~~~~~~~~~--~~y~p~~----~--~~p~iv~~HGGg~--------~~g~~~~~---~~~~~~~l~~~g~~Vi~ 63 (274)
T 2qru_A 8 NQTLANGATV--TIYPTTT----E--PTNYVVYLHGGGM--------IYGTKSDL---PEELKELFTSNGYTVLA 63 (274)
T ss_dssp EEECTTSCEE--EEECCSS----S--SCEEEEEECCSTT--------TSCCGGGC---CHHHHHHHHTTTEEEEE
T ss_pred cccccCCeeE--EEEcCCC----C--CCcEEEEEeCccc--------cCCChhhc---hHHHHHHHHHCCCEEEE
Confidence 4445678666 6777864 1 3399999875411 12221111 11123568888999998
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=81.64 E-value=2 Score=41.21 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=38.0
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+.+.++|.+. .|.+|..+ +.| .+ +++ |+||+.|+... .+....|.... ...++++..||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p-~~---~~~--p~vvllHG~~~---------~~~~~~w~~~~-~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQS-GG---ANS--PALYLLDGLRA---------QDDFSGWDINT-PAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EEC-CS---TTB--CEEEEECCTTC---------CSSSCHHHHHC-CHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECC-CC---CCC--CEEEEeCCCCC---------CCCcchhhcCC-CHHHHHhcCCeEEE
Confidence 5677888776 57788877 444 43 345 99999774200 00011111100 11367888999999
Q ss_pred eCCCC
Q 007620 560 AGPSI 564 (595)
Q Consensus 560 ~~~~~ 564 (595)
. |+.
T Consensus 71 ~-p~~ 74 (304)
T 1sfr_A 71 M-PVG 74 (304)
T ss_dssp E-ECC
T ss_pred E-ECC
Confidence 8 543
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=81.34 E-value=0.82 Score=43.39 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.6
Q ss_pred hhHHHhccCeEEEeCCCCceeec
Q 007620 547 SSLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
..+.|+++||.|+. +|.|..|.
T Consensus 70 la~~La~~Gy~Via-~Dl~GhG~ 91 (281)
T 4fbl_A 70 LAEGFARAGYTVAT-PRLTGHGT 91 (281)
T ss_dssp HHHHHHHTTCEEEE-CCCTTSSS
T ss_pred HHHHHHHCCCEEEE-ECCCCCCC
Confidence 35799999999999 99987664
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=81.16 E-value=16 Score=36.41 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=41.8
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|.++|+.. -.....+..+.. .....++.+.. +|.+. ....|++++++++....+ ..
T Consensus 106 ~~l~v~dv~s---l~~~~~~~~~~~--~v~~i~~~~p~--~av~~----------~dG~L~v~dl~~~~~~~~---~~-- 163 (388)
T 1xip_A 106 NALYSLDLEE---LSEFRTVTSFEK--PVFQLKNVNNT--LVILN----------SVNDLSALDLRTKSTKQL---AQ-- 163 (388)
T ss_dssp SEEEEEESSS---TTCEEEEEECSS--CEEEEEECSSE--EEEEE----------TTSEEEEEETTTCCEEEE---EE--
T ss_pred CcEEEEEchh---hhccCccceeec--ceeeEEecCCC--EEEEE----------CCCCEEEEEccCCccccc---cC--
Confidence 4677888762 222223332222 24455665542 55543 237899999998876554 22
Q ss_pred ccccccceEEecCC
Q 007620 85 LNAVFGSFVWVNNS 98 (595)
Q Consensus 85 ~~~~~~~~~Wspdg 98 (595)
.+.++.|||+|
T Consensus 164 ---~Vs~v~WSpkG 174 (388)
T 1xip_A 164 ---NVTSFDVTNSQ 174 (388)
T ss_dssp ---SEEEEEECSSE
T ss_pred ---CceEEEEcCCc
Confidence 57899999999
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=80.98 E-value=0.99 Score=47.47 Aligned_cols=31 Identities=23% Similarity=0.638 Sum_probs=21.3
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCC
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPED 523 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~ 523 (595)
+.|.+.+ .++.|.+..+++ ++|+|||+|+|.
T Consensus 94 sedcl~l--~v~~P~~~~~~~--~~Pv~v~iHGGg 124 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGA--NLPVMLWIFGGG 124 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTC--CEEEEEEECCST
T ss_pred CCCCeEE--EEEECCCCCCCC--CceEEEEEeCCC
Confidence 4566655 577898755444 459999988653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 595 | ||||
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 1e-04 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 4e-04 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 9e-04 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 0.002 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 0.003 |
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 34/273 (12%), Positives = 70/273 (25%), Gaps = 22/273 (8%)
Query: 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103
RIA+ V+ + + ++D + + SP + S W + + L +
Sbjct: 5 RIAYVVQTNGGQFPY----ELRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAY 55
Query: 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163
S R + G Q + ++ +
Sbjct: 56 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115
Query: 164 LDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223
+ + T PD + + TS Q T + +
Sbjct: 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQ 172
Query: 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP--RDIIYTQ 281
D + D G + + D + V + D ++P +IY+
Sbjct: 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSS 232
Query: 282 PAE--------PAEGEKPEILHKLDLRFRSVSW 306
+G L D + + +W
Sbjct: 233 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 265
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAY 520
I Y KDG + + G DG P + Y
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIK--LDGSHPAFLYGY 43
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 39.3 bits (90), Expect = 9e-04
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 466 QITNFPHPYPTLAS-LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 524
IT P ++ K + +DGV L + LP G P + P D
Sbjct: 7 DITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDA 61
Query: 525 KSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560
+ R + + +F+ + +
Sbjct: 62 ----SGRTERLASPHMKDLLSAGDDVFVEGGYIRVF 93
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.9 bits (86), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAY 520
+ + + + + LPP +D+SK P L Y
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVY 39
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 37.8 bits (86), Expect = 0.003
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ 532
P K + +DGV L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 533 VRGSPNEFSGMTPTSSLIFLARRFAVLA 560
+ + P +F+ + +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVF 98
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.81 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.73 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.68 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.49 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.27 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.15 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.13 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.12 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.06 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.05 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.02 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.98 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.91 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.87 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.85 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.82 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.75 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.7 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.69 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.68 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.67 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 98.67 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.55 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 98.53 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.5 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.43 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.4 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 98.38 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.37 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 98.37 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.34 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.33 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.18 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.97 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.96 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 97.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.87 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 97.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.55 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.53 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.53 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.38 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 97.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.28 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 97.22 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 97.16 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 97.15 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 97.15 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.08 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 97.04 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.01 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 97.0 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 96.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.8 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 96.72 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.69 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.58 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.54 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.45 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 96.39 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.31 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.74 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 95.62 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.58 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 95.52 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 95.4 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.39 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.22 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.2 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.14 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.03 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 94.91 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 94.59 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 94.56 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 94.53 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.13 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 94.1 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.31 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.05 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 91.87 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 91.63 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 91.36 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 90.51 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 89.52 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 89.36 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 89.07 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 88.06 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 87.87 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 87.21 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 86.33 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 84.98 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 83.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 83.03 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 82.21 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 82.08 |
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7.9e-18 Score=161.70 Aligned_cols=246 Identities=14% Similarity=0.098 Sum_probs=165.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
.-+|||+|.. ++..++|+..+. .+..|+|||||++|||++.+ ....++|+++..++..++++....
T Consensus 18 ~~~l~i~d~d----G~~~~~l~~~~~--~~~sP~wSPDGk~IAf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~- 83 (269)
T d2hqsa1 18 PYELRVSDYD----GYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR- 83 (269)
T ss_dssp CEEEEEEETT----SCSCEEEEEESS--CEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSS-
T ss_pred eEEEEEEcCC----CCCcEEEecCCC--ceeeeEECCCCCEEEEEEee-------ccCcceeeeecccCceeEEeeeec-
Confidence 3489999987 889999985443 47899999999999999865 456789999999999999987655
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
....+.|||||+.|++..... + ...+....
T Consensus 84 ----~~~~~~~spdg~~i~~~~~~~---------------------~-------------------------~~~~~~~~ 113 (269)
T d2hqsa1 84 ----HNGAPAFSPDGSKLAFALSKT---------------------G-------------------------SLNLYVMD 113 (269)
T ss_dssp ----CEEEEEECTTSSEEEEEECTT---------------------S-------------------------SCEEEEEE
T ss_pred ----ccccceecCCCCeeeEeeecC---------------------C-------------------------ccceeecc
Confidence 456789999999999864210 0 01122222
Q ss_pred C-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 164 ~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
. .......... .......++++++.++++..... ...++++++.++...++.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~------------ 171 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGS------------ 171 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSS------------
T ss_pred cccccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeecccc------------
Confidence 2 2233333322 23346789999999988875432 3478899998877766654321
Q ss_pred cCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecc
Q 007620 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (595)
....+.|+||++. +++.. .+.+ ...+++.+. .+ ....++...+....+.|||||+.|+|.... .
T Consensus 172 -~~~~~~~spdg~~-~~~~~-~~~~--------~~~i~~~~~---~~-~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~ 235 (269)
T d2hqsa1 172 -QNQDADVSSDGKF-MVMVS-SNGG--------QQHIAKQDL---AT-GGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-G 235 (269)
T ss_dssp -EEEEEEECTTSSE-EEEEE-ECSS--------CEEEEEEET---TT-CCEEECCCSSSCEEEEECTTSSEEEEEEEE-T
T ss_pred -cccccccccccce-eEEEe-ecCC--------ceeeeEeec---cc-ccceEeecCccccceEECCCCCEEEEEEcC-C
Confidence 1224789999985 44442 1211 234566664 33 334444445556678999999998887533 4
Q ss_pred cceEEEEEeCCCCCCCcEEEeecc--cccccCCCCCCCeeeCC
Q 007620 322 SQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTS 362 (595)
Q Consensus 322 ~~~~L~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 362 (595)
+...||++++++ +..+.|+... +.. ++|+|
T Consensus 236 ~~~~l~~~~~dg--~~~~~lt~~~g~~~~---------p~WSP 267 (269)
T d2hqsa1 236 MGSVLNLVSTDG--RFKARLPATDGQVKF---------PAWSP 267 (269)
T ss_dssp TEEEEEEEETTS--CCEEECCCSSSEEEE---------EEECC
T ss_pred CCcEEEEEECCC--CCEEEEeCCCCcEEe---------EEeCC
Confidence 567999999998 4566665432 222 78887
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.9e-17 Score=169.45 Aligned_cols=356 Identities=11% Similarity=0.009 Sum_probs=197.6
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCC--cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+|++.|+. +++.+.+....... .+....|||||++|+|......- =.......+|++|+++++.++|+.....
T Consensus 38 ~i~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~-~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 38 TVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred cEEEEECC----CCCEEEEEcCccccccccceeEECCCCCeEEEEEcccce-eEeeccccEEEEEccCCceeeccCccCC
Confidence 68999998 67766654322211 35567899999999997643110 0002346899999999999998654321
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
...+..+.|||||+.|+|+.. ..||+++
T Consensus 113 --~~~l~~~~wSPDG~~iafv~~--------------------------------------------------~nl~~~~ 140 (465)
T d1xfda1 113 --NAKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYCA 140 (465)
T ss_dssp --SCCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEES
T ss_pred --ccccceeeeccCCceEEEEec--------------------------------------------------ceEEEEe
Confidence 113446899999999999732 1244444
Q ss_pred C-CCCeeecCCC--------------------CeeeeeEECCCCCeEEEEEcccCccccc----------c------Cc-
Q 007620 164 L-DGTAKDFGTP--------------------AVYTAVEPSPDQKYVLITSMHRPYSYKV----------P------CA- 205 (595)
Q Consensus 164 ~-~g~~~~lt~~--------------------~~~~~~~~SpDg~~l~~~~~~~~~~~~~----------~------~~- 205 (595)
. .++..+|+.. .....+.|||||++|+|...+...-... + +.
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 4 2233333211 1123677999999999987543210000 0 00
Q ss_pred ----ccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEec
Q 007620 206 ----RFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQ 281 (595)
Q Consensus 206 ----~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~ 281 (595)
.-...|+++|++++....+...+..... ...-...+.|++|++ +++. ..+.. .....++++
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~------~~~y~~~~~W~~d~~--~~~~-~~nR~------q~~~~i~~~ 285 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRM------REYYITMVKWATSTK--VAVT-WLNRA------QNVSILTLC 285 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGG------SSEEEEEEEESSSSE--EEEE-EEETT------SCEEEEEEE
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCcc------ccceeeeeEEcCCCe--EEEE-EEccc------cccceEEEE
Confidence 0113688999887665443221110000 000012468999986 3332 22211 112346666
Q ss_pred cCCCCCCCCceecccc--Cc----cccceeecCCCcEEEEEE-eecccceEEEEEeCCCC-----CCCcEEEeecc--cc
Q 007620 282 PAEPAEGEKPEILHKL--DL----RFRSVSWCDDSLALVNET-WYKTSQTRTWLVCPGSK-----DVAPRVLFDRV--FE 347 (595)
Q Consensus 282 d~~~~~g~~~~~l~~~--~~----~~~~~~wspDg~~l~~~~-~~~~~~~~L~~~d~~~~-----~~~~~~l~~~~--~~ 347 (595)
|+ ..|+.+.+... +. ....+.|++||..+++.. ....+..+||++.+.+. .+..+.|+..+ +.
T Consensus 286 d~---~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~ 362 (465)
T d1xfda1 286 DA---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (465)
T ss_dssp ET---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred cC---CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEE
Confidence 75 44566665432 22 235689999998654432 12345667887754321 02335565433 33
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCce-eeeeecCccccceeeEEee
Q 007620 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-ERIWESNREKYFETAVALV 426 (595)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~ 426 (595)
+ .+.|+++++.|||.+........+ |+++++..+.. +.|++.... -.+..
T Consensus 363 ~--------i~~~d~~~~~vyF~a~~~~p~~~h----------------ly~v~l~g~~~~~~lt~~~~~--~~~~~--- 413 (465)
T d1xfda1 363 K--------ILAYDEKGNKIYFLSTEDLPRRRQ----------------LYSANTVGNFNRQCLSCDLVE--NCTYF--- 413 (465)
T ss_dssp E--------EEEEETTTTEEEEEESSSCTTCCE----------------EEEECSSTTCCCBCSSTTSSS--SCCCC---
T ss_pred E--------EEEEcCCCCEEEEEEeCCCCCceE----------------EEEEECCCCCcceeeccccCC--CCCEE---
Confidence 3 157888888888887532211223 44667655443 334332211 00111
Q ss_pred eCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCce-eeEecC
Q 007620 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS-SQITNF 470 (595)
Q Consensus 427 ~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~-~~Lt~~ 470 (595)
...||+++++++.+++.++.|+ ..+++..+++. +.|++.
T Consensus 414 ----~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 414 ----SASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp ----EEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEECC
T ss_pred ----EEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEcCC
Confidence 2468999999999999998777 66777665554 455543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.1e-17 Score=161.51 Aligned_cols=256 Identities=13% Similarity=0.054 Sum_probs=156.5
Q ss_pred eEEccC--CCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 007620 36 VSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (595)
Q Consensus 36 ~~~SPD--G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~ 113 (595)
..+||| |++|||++. .+||++|+++|++++||.... ....+.|||||+.|+|+....
T Consensus 4 ~~~sPdi~G~~v~f~~~-----------~dl~~~d~~~g~~~~Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~----- 62 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC-----------DDLWEHDLKSGSTRKIVSNLG-----VINNARFFPDGRKIAIRVMRG----- 62 (281)
T ss_dssp CCEEEEEETTEEEEEET-----------TEEEEEETTTCCEEEEECSSS-----EEEEEEECTTSSEEEEEEEES-----
T ss_pred cccCCCCCCCEEEEEeC-----------CcEEEEECCCCCEEEEecCCC-----cccCEEECCCCCEEEEEEeeC-----
Confidence 467999 999999863 479999999999999987765 456899999999999974210
Q ss_pred CccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC--------eeeeeEECC
Q 007620 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA--------VYTAVEPSP 184 (595)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~--------~~~~~~~Sp 184 (595)
+. + ...+||++++ .|+.++|+... ....+.|||
T Consensus 63 ----------------~~---------------~-------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp 104 (281)
T d1k32a2 63 ----------------SS---------------L-------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP 104 (281)
T ss_dssp ----------------TT---------------C-------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT
T ss_pred ----------------CC---------------C-------CceEEEEEEecCCceEEeeecCCCccCccccccccccCC
Confidence 10 0 1357999999 55888887542 123678999
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
||+.|+|+....+.. ....++.++.+++..+..... .....|.+++...++.. ...
T Consensus 105 dg~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-~~~ 160 (281)
T d1k32a2 105 DGNLIISTDAMQPFS-------SMTCLYRVENDGINFVPLNLG----------------PATHILFADGRRVIGRN-TFE 160 (281)
T ss_dssp TCCEEEEECTTSSST-------TCCEEEEEEGGGTEEEECCSC----------------SCSEEEEETTEEEEEES-CSC
T ss_pred CCCEEEEEEccCCCc-------cceeeeeecCCCceeEEecCC----------------ccceeeecCCCeEEEee-ccc
Confidence 999999987554321 123566778877776665432 12356777776533322 111
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~ 344 (595)
................... ..+....+.........+.|+++...+.. ...+..+||++|+++ ++.+.|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~d~~g--~~~~~lt~~ 232 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEV---NSGAFKKIVDMSTHVSSPVIVGHRIYFIT---DIDGFGQIYSTDLDG--KDLRKHTSF 232 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEE---ETTEEEEEECCSSCCEEEEEETTEEEEEE---CTTSSCEEEEEETTS--CSCEECCCC
T ss_pred cceeeeeccCCcceeeeec---cccceeeccCCccccceeeeeccccceec---ccccccceEEEeCCC--CceEEeecC
Confidence 1110000000001111010 11122333333344556777766433222 234566899999998 456777543
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeee
Q 007620 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (595)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (595)
.... ...|++||+.|+|.. +..|| .+|+++|+.++|..
T Consensus 233 ~~~~--------~~~~SpDG~~I~f~~------~~~l~----------------~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 233 TDYY--------PRHLNTDGRRILFSK------GGSIY----------------IFNPDTEKIEKIEI 270 (281)
T ss_dssp CSSC--------EEEEEESSSCEEEEE------TTEEE----------------EECTTTCCEEECCC
T ss_pred CCcc--------cccCcCCCCEEEEEe------CCEEE----------------EEECCCCCEEEecc
Confidence 2111 157899999998865 22355 57888998888743
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=5.8e-16 Score=161.37 Aligned_cols=357 Identities=10% Similarity=-0.045 Sum_probs=187.8
Q ss_pred eeEEEecCCCCCCCCceeeecCCC----CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD----GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~----~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
+|++.|+. +|+.+.+..-.. ...+..+.|||||++|||.+..... -......++|++|+++++.++++...
T Consensus 37 ~~~~~~~~----t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~-~r~s~~~~~~l~d~~~~~~~~l~~~~ 111 (470)
T d2bgra1 37 NILVFNAE----YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTASYDIYDLNKRQLITEERIP 111 (470)
T ss_dssp CEEEEETT----TCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECC----CCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcce-eeeccCceEEEEECCCCcccccccCC
Confidence 58999998 787776642111 1246789999999999998753100 00022468999999999999988766
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEE
Q 007620 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (595)
Q Consensus 82 ~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (595)
. .+..+.|||||+.|+|... ..||+
T Consensus 112 ~-----~~~~~~~SPDG~~ia~~~~--------------------------------------------------~~l~~ 136 (470)
T d2bgra1 112 N-----NTQWVTWSPVGHKLAYVWN--------------------------------------------------NDIYV 136 (470)
T ss_dssp T-----TEEEEEECSSTTCEEEEET--------------------------------------------------TEEEE
T ss_pred c-----cccccccccCcceeeEeec--------------------------------------------------ccceE
Confidence 5 4678999999999999632 12333
Q ss_pred EcC-CCCeeecCCC--------------------CeeeeeEECCCCCeEEEEEcccCccccc--c---------------
Q 007620 162 GSL-DGTAKDFGTP--------------------AVYTAVEPSPDQKYVLITSMHRPYSYKV--P--------------- 203 (595)
Q Consensus 162 ~d~-~g~~~~lt~~--------------------~~~~~~~~SpDg~~l~~~~~~~~~~~~~--~--------------- 203 (595)
.++ .|+..+++.. .....+.|||||++|+|...+....... +
T Consensus 137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (470)
T d2bgra1 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (470)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeee
Confidence 333 2222222210 1123578999999999987543210000 0
Q ss_pred -Cc-----ccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcce
Q 007620 204 -CA-----RFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (595)
Q Consensus 204 -~~-----~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~ 277 (595)
.. .....++++++.++....+..... ...+............+.|.++++ ++........+.. .-.
T Consensus 217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~r~~~~~-----~~~ 288 (470)
T d2bgra1 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQER--ISLQWLRRIQNYS-----VMD 288 (470)
T ss_dssp ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTE--EEEEEEESSTTEE-----EEE
T ss_pred ccccccccCCcceEEEEECCCcceeeeccccc-cCCccccCCCCceEEEEEEcCCCc--eeEEEeeccCCce-----EEE
Confidence 00 011245566655433211100000 000000000000011367887775 2222111111100 012
Q ss_pred EEeccCCCCCCCCceecccc-------C-----ccccceeecCCCcE-EEEEEeecccceEEEEEeCCCCCCCcEEEeec
Q 007620 278 IYTQPAEPAEGEKPEILHKL-------D-----LRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (595)
Q Consensus 278 ~~~~d~~~~~g~~~~~l~~~-------~-----~~~~~~~wspDg~~-l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~ 344 (595)
++.+|. ..+....+... . .....+.|++++.. +++. ...++..+||++++++ +..+.|+..
T Consensus 289 ~~~~d~---~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-s~~dg~~~ly~~~~~g--~~~~~lt~g 362 (470)
T d2bgra1 289 ICDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII-SNEEGYRHICYFQIDK--KDCTFITKG 362 (470)
T ss_dssp EEEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE-ECTTSCEEEEEEETTC--SCCEESCCS
T ss_pred EEEecC---CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEE-eccCcCceeEEEeccC--CceeeeccC
Confidence 333443 22343332210 0 11245677777654 3333 2345677999999988 456766543
Q ss_pred c--cccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCc-eeeeeecCcccccee
Q 007620 345 V--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS-KERIWESNREKYFET 421 (595)
Q Consensus 345 ~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~ 421 (595)
+ +.. .++.+++.+||.+...+. + .....|+++++..+. .+.|+..... ...+
T Consensus 363 ~~~v~~----------~~~~d~~~iyf~a~~~~~------------~--p~~~~ly~v~~~g~~~~~~lt~~~~~-~~~~ 417 (470)
T d2bgra1 363 TWEVIG----------IEALTSDYLYYISNEYKG------------M--PGGRNLYKIQLSDYTKVTCLSCELNP-ERCQ 417 (470)
T ss_dssp SSCEEE----------EEEECSSEEEEEESCGGG------------C--TTCBEEEEEETTCTTCEEESSTTTST-TTBC
T ss_pred CeeEEE----------EEEECCCEEEEEEecCCC------------C--cceEEEEEEECCCCCceeEecccccC-CCCC
Confidence 3 222 234466777777643211 0 011235567776544 4445432211 1112
Q ss_pred eEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCce-eeEec
Q 007620 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS-SQITN 469 (595)
Q Consensus 422 ~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~-~~Lt~ 469 (595)
+. .+.|||||++++.+++.++.|+. .+++..+++. +.|++
T Consensus 418 ~~-------s~~fSpdgky~~~~~s~~~~P~~-~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 418 YY-------SVSFSKEAKYYQLRCSGPGLPLY-TLHSSVNDKGLRVLED 458 (470)
T ss_dssp BE-------EEEECTTSSEEEEEECSBSSCEE-EEEETTTTEEEEEEEC
T ss_pred EE-------EEEECCCCCEEEEEecCCCCCeE-EEEECCCCCEEEEEec
Confidence 22 24699999999999999999984 5666666654 55665
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.8e-15 Score=144.85 Aligned_cols=250 Identities=18% Similarity=0.186 Sum_probs=156.7
Q ss_pred CEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCC
Q 007620 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (595)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (595)
++|||++.++.. +...+||++|.+++..++||.... .+.+++|||||+.|+|+....
T Consensus 4 ~~iay~~~~~~~----~~~~~l~i~d~dG~~~~~l~~~~~-----~~~sP~wSPDGk~IAf~~~~~-------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFES-------------- 60 (269)
T ss_dssp CEEEEEEECSSS----SCCEEEEEEETTSCSCEEEEEESS-----CEEEEEECTTSSEEEEEECTT--------------
T ss_pred CeEEEEEEeCCC----CceEEEEEEcCCCCCcEEEecCCC-----ceeeeEECCCCCEEEEEEeec--------------
Confidence 799999876421 234589999999999999987665 456899999999999974210
Q ss_pred eeeecCcccccccccccccccCcCCccceEEeecceEEEEcCC-CCeeecCCC-CeeeeeEECCCCCeEEEEEcccCccc
Q 007620 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (595)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~~~~~~ 200 (595)
...++++.+.. +..++++.. .....+.|||||+.|++......
T Consensus 61 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--- 105 (269)
T d2hqsa1 61 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 105 (269)
T ss_dssp --------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---
T ss_pred --------------------------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC---
Confidence 12457778874 466666544 34567899999999999875432
Q ss_pred cccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEe
Q 007620 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (595)
Q Consensus 201 ~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (595)
...+..+............... ......|++++.. +++....+ + ...++.
T Consensus 106 -------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~-g--------~~~i~~ 155 (269)
T d2hqsa1 106 -------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQN-LAFTSDQA-G--------RPQVYK 155 (269)
T ss_dssp -------SCEEEEEETTTCCEEECCCCSS-------------CEEEEEECTTSSE-EEEEECTT-S--------SCEEEE
T ss_pred -------ccceeecccccccceeeeeccc-------------ccccccccccccc-ceeccccc-C--------CceEee
Confidence 1233344433333333222110 0113456777764 33332111 1 124555
Q ss_pred ccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEeec-ccccccCCCCCCCee
Q 007620 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMT 359 (595)
Q Consensus 281 ~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 359 (595)
.+. .++....++........+.||||++.+++... +.+...|++++..++ ..+.+... .... +.
T Consensus 156 ~~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~~~~~---------p~ 220 (269)
T d2hqsa1 156 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATG--GVQVLSSTFLDET---------PS 220 (269)
T ss_dssp EET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTC--CEEECCCSSSCEE---------EE
T ss_pred eec---ccccceeeecccccccccccccccceeEEEee-cCCceeeeEeecccc--cceEeecCccccc---------eE
Confidence 554 44455566655666778999999998777653 345678999998873 33333221 1112 79
Q ss_pred eCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeec
Q 007620 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (595)
Q Consensus 360 ~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (595)
|+|||+.|+|.....+ ...|| .++++++..++|+..
T Consensus 221 ~SPDG~~i~f~s~~~~--~~~l~----------------~~~~dg~~~~~lt~~ 256 (269)
T d2hqsa1 221 LAPNGTMVIYSSSQGM--GSVLN----------------LVSTDGRFKARLPAT 256 (269)
T ss_dssp ECTTSSEEEEEEEETT--EEEEE----------------EEETTSCCEEECCCS
T ss_pred ECCCCCEEEEEEcCCC--CcEEE----------------EEECCCCCEEEEeCC
Confidence 9999999999875432 33344 567767777777544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.3e-15 Score=155.91 Aligned_cols=312 Identities=11% Similarity=0.108 Sum_probs=178.3
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCC-CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (595)
|..++||+|+. +++.++|+..... .....|.|||||++|||++. .+||+++..+++..++|...
T Consensus 89 ~~~~~~i~d~~----~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-----------~nl~~~~~~~~~~~~lt~~g 153 (465)
T d1xfda1 89 YTGYYVLSKIP----HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------NNIYYCAHVGKQAIRVVSTG 153 (465)
T ss_dssp CCSEEEEEESS----SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------TEEEEESSSSSCCEEEECCC
T ss_pred ccccEEEEEcc----CCceeeccCccCCccccceeeeccCCceEEEEec-----------ceEEEEecCCCceEEEeccc
Confidence 45789999998 8899999743322 13557999999999999873 68999999999988888654
Q ss_pred Ccc--ccc------------cccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCC
Q 007620 82 DIC--LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (595)
Q Consensus 82 ~~~--~~~------------~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 147 (595)
... .++ ....+.|||||+.|+|...+...... ..++. ..+.. .... ...+++.-
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~--~~~~~-------~~~~~--~p~~-~~~~Yp~~ 221 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI--MELPT-------YTGSI--YPTV-KPYHYPKA 221 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE--EEECC-------CSSSS--SCCC-EEEECCBT
T ss_pred CcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccce--eeccc-------ccccc--ccee-eeeecccc
Confidence 311 110 11367799999999997543322110 00000 00000 0000 00111111
Q ss_pred ccceEEeecceEEEEcCCC-Ceeec-CC------CC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCC
Q 007620 148 ESLFDYYTTAQLVLGSLDG-TAKDF-GT------PA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (595)
Q Consensus 148 ~~~~~~~~~~~l~~~d~~g-~~~~l-t~------~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 218 (595)
+. . ....+|+++++++ ..+.+ .. .. +...+.|+||++.+++. .++.. ....+.++|..+
T Consensus 222 G~--~-np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~-~nR~q--------~~~~i~~~d~~t 289 (465)
T d1xfda1 222 GS--E-NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW-LNRAQ--------NVSILTLCDATT 289 (465)
T ss_dssp TS--C-CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE-EETTS--------CEEEEEEEETTT
T ss_pred CC--C-CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE-Ecccc--------ccceEEEEcCCC
Confidence 11 0 1246899999954 33222 11 12 34578999998755444 44432 134788999988
Q ss_pred ceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCC----CCCCCCceec
Q 007620 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE----PAEGEKPEIL 294 (595)
Q Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~----~~~g~~~~~l 294 (595)
++.+.+..... ...++ .....+.|++||+. ++++...+. ..++.++.+.+. ...++..+.|
T Consensus 290 g~~~~~~~e~~----~~wv~---~~~~~p~~~~dg~~-~~fi~~se~-------~g~~~ly~~~~~~~~~~~~~~~~~~L 354 (465)
T d1xfda1 290 GVCTKKHEDES----EAWLH---RQNEEPVFSKDGRK-FFFIRAIPQ-------GGRGKFYHITVSSSQPNSSNDNIQSI 354 (465)
T ss_dssp CCEEEEEEEEC----SSCCC---CCCCCCEECTTSCS-EEEEEEECC-------SSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred CcEEEEEEEcC----CceEe---ccCCceeEccCCCe-eEEEEeeee-------cccCceEEEEeccccccCCCceeEEe
Confidence 87766643210 00000 01235789999985 545433222 123344433210 0134456778
Q ss_pred cccCccccc-eeecCCCcEEEEEEeec-ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 295 HKLDLRFRS-VSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 295 ~~~~~~~~~-~~wspDg~~l~~~~~~~-~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+...+.+.. +.|.+++..++|.+..+ ....+||.++++++ ...++|+-..... .+...+.+|++|++++....
T Consensus 355 T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~-~~~~~lt~~~~~~----~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVEN----CTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSS----CCCCEEEECTTSSEEEEECC
T ss_pred ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCC-CcceeeccccCCC----CCEEEEEECCCCCEEEEEee
Confidence 877776555 46999988887766433 35669999999985 3445553111110 12223788999998776654
Q ss_pred e
Q 007620 373 K 373 (595)
Q Consensus 373 ~ 373 (595)
.
T Consensus 430 ~ 430 (465)
T d1xfda1 430 G 430 (465)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=5.5e-15 Score=142.13 Aligned_cols=244 Identities=14% Similarity=0.127 Sum_probs=144.7
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
+||++|+. +|++++||..+ ..+..|+|||||++|||++.++.+ ....+||++++.+|+.++||.......
T Consensus 22 dl~~~d~~----~g~~~~Lt~~~--~~~~~p~~SPDG~~iaf~~~~~~~----~~~~~i~~~~~~~g~~~~lt~~~~~~~ 91 (281)
T d1k32a2 22 DLWEHDLK----SGSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGSS----LNTADLYFYNGENGEIKRITYFSGKST 91 (281)
T ss_dssp EEEEEETT----TCCEEEEECSS--SEEEEEEECTTSSEEEEEEEESTT----CCEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred cEEEEECC----CCCEEEEecCC--CcccCEEECCCCCEEEEEEeeCCC----CCceEEEEEEecCCceEEeeecCCCcc
Confidence 79999998 99999999533 358899999999999999876321 235789999999999999987653211
Q ss_pred c--ccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 86 N--AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 86 ~--~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
. .....+.|+|||+.|+|....... . ....++.++
T Consensus 92 ~~~~~~~~~~~spdg~~l~~~~~~~~~------------------------------------~-------~~~~~~~~~ 128 (281)
T d1k32a2 92 GRRMFTDVAGFDPDGNLIISTDAMQPF------------------------------------S-------SMTCLYRVE 128 (281)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSS------------------------------------T-------TCCEEEEEE
T ss_pred CccccccccccCCCCCEEEEEEccCCC------------------------------------c-------cceeeeeec
Confidence 1 112367899999999997321000 0 012344555
Q ss_pred CCC-CeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCcccccccc
Q 007620 164 LDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (595)
Q Consensus 164 ~~g-~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~ 242 (595)
.++ +.+.+.... ....|++++..+++............... ................+.....
T Consensus 129 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------- 192 (281)
T d1k32a2 129 NDGINFVPLNLGP--ATHILFADGRRVIGRNTFELPHWKGYRGG-TRGKIWIEVNSGAFKKIVDMST------------- 192 (281)
T ss_dssp GGGTEEEECCSCS--CSEEEEETTEEEEEESCSCCTTSTTCCST-TCCEEEEEEETTEEEEEECCSS-------------
T ss_pred CCCceeEEecCCc--cceeeecCCCeEEEeeccccceeeeeccC-CcceeeeeccccceeeccCCcc-------------
Confidence 543 444443322 13467778777777654332111111111 1122223333333333322210
Q ss_pred CCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeeccc
Q 007620 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (595)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (595)
....+.|+++ .+++.. + ......||++++ ++++.++|+.... .....|||||+.|+|... +
T Consensus 193 ~~~~~~~~~~---~~~~~~--~-------~~~~~~l~~~d~---~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~---~ 253 (281)
T d1k32a2 193 HVSSPVIVGH---RIYFIT--D-------IDGFGQIYSTDL---DGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG---G 253 (281)
T ss_dssp CCEEEEEETT---EEEEEE--C-------TTSSCEEEEEET---TSCSCEECCCCCS-SCEEEEEESSSCEEEEET---T
T ss_pred ccceeeeecc---ccceec--c-------cccccceEEEeC---CCCceEEeecCCC-cccccCcCCCCEEEEEeC---C
Confidence 1123445544 233331 1 122346888886 7778888875432 234579999999988652 2
Q ss_pred ceEEEEEeCCCCCCCcEEE
Q 007620 323 QTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 323 ~~~L~~~d~~~~~~~~~~l 341 (595)
.||++|+++ ++.+.|
T Consensus 254 --~l~~~d~~~--g~~~~i 268 (281)
T d1k32a2 254 --SIYIFNPDT--EKIEKI 268 (281)
T ss_dssp --EEEEECTTT--CCEEEC
T ss_pred --EEEEEECCC--CCEEEe
Confidence 699999998 455665
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.66 E-value=5.3e-15 Score=147.09 Aligned_cols=170 Identities=15% Similarity=0.082 Sum_probs=118.9
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..||++|+. +|..+++. ....+..++|||||++|++.+.. ....|+++++++++.++++....
T Consensus 24 g~v~v~d~~----~~~~~~~~---~~~~v~~~~~spDg~~l~~~~~~--------~g~~v~v~d~~~~~~~~~~~~~~-- 86 (360)
T d1k32a3 24 GQAFIQDVS----GTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTR--------EGDFLGIYDYRTGKAEKFEENLG-- 86 (360)
T ss_dssp TEEEEECTT----SSBEEECS---CCSCEEEEEECSSSEEEEEEEET--------TEEEEEEEETTTCCEEECCCCCC--
T ss_pred CeEEEEECC----CCcEEEcc---CCCCEEEEEECCCCCEEEEEEcC--------CCCEEEEEECCCCcEEEeeCCCc--
Confidence 468999997 88888885 23368899999999999998763 34579999999999999876554
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC
Q 007620 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 164 (595)
.+..+.|+|||+.|++... ...++++++
T Consensus 87 ---~v~~~~~spdg~~l~~~~~-------------------------------------------------~~~~~~~~~ 114 (360)
T d1k32a3 87 ---NVFAMGVDRNGKFAVVAND-------------------------------------------------RFEIMTVDL 114 (360)
T ss_dssp ---SEEEEEECTTSSEEEEEET-------------------------------------------------TSEEEEEET
T ss_pred ---eEEeeeecccccccceecc-------------------------------------------------ccccccccc
Confidence 5678999999999988621 124556666
Q ss_pred -CCCeeecCC-C-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccc
Q 007620 165 -DGTAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (595)
Q Consensus 165 -~g~~~~lt~-~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~ 241 (595)
.++...+.. . .....++|||||++|++........ ........+++||+.+++...+.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~---~~~~~~~~~~v~d~~~~~~~~~~~~~~------------ 179 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE---TDGYVMQAIHVYDMEGRKIFAATTENS------------ 179 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST---TCSCCEEEEEEEETTTTEEEECSCSSS------------
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccc---eeeccccceeeeccccCceeeeccccc------------
Confidence 344443322 2 2445799999999999986543210 011123478899999888777654321
Q ss_pred cCCCCceeecCCCeeEEEE
Q 007620 242 EGMRSISWRADKPSTLYWV 260 (595)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~ 260 (595)
......|+|||+. |++.
T Consensus 180 -~~~~~~~spdg~~-l~~~ 196 (360)
T d1k32a3 180 -HDYAPAFDADSKN-LYYL 196 (360)
T ss_dssp -BEEEEEECTTSCE-EEEE
T ss_pred -ccccccccCCCCE-EEEE
Confidence 1234789999984 5554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=4.8e-14 Score=146.57 Aligned_cols=316 Identities=9% Similarity=-0.007 Sum_probs=173.4
Q ss_pred ceeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCC
Q 007620 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (595)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (595)
+..++||+|++ +++.++++..+. .+..+.|||||++|||++. .+||++++.+|+..+++....
T Consensus 90 ~~~~~~l~d~~----~~~~~~l~~~~~--~~~~~~~SPDG~~ia~~~~-----------~~l~~~~~~~g~~~~~t~~~~ 152 (470)
T d2bgra1 90 YTASYDIYDLN----KRQLITEERIPN--NTQWVTWSPVGHKLAYVWN-----------NDIYVKIEPNLPSYRITWTGK 152 (470)
T ss_dssp EEEEEEEEETT----TTEECCSSCCCT--TEEEEEECSSTTCEEEEET-----------TEEEEESSTTSCCEECCSCCB
T ss_pred cCceEEEEECC----CCcccccccCCc--cccccccccCcceeeEeec-----------ccceEEECCCCceeeeeeccC
Confidence 35689999998 888889986554 4889999999999999752 579999999999888875432
Q ss_pred cc--cc------------ccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCc
Q 007620 83 IC--LN------------AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (595)
Q Consensus 83 ~~--~~------------~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (595)
.. .+ .....+.|||||+.|+|...+..... .+.....+............+++...
T Consensus 153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~----------~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (470)
T d2bgra1 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP----------LIEYSFYSDESLQYPKTVRVPYPKAG 222 (470)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC----------EEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred CCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc----------eEEEEeeccCCCCCCeeeeecccccc
Confidence 11 01 11235789999999999754332111 00000000000000000000111111
Q ss_pred cceEEeecceEEEEcC-CCCeeec------C------CCC-eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 149 SLFDYYTTAQLVLGSL-DGTAKDF------G------TPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 149 ~~~~~~~~~~l~~~d~-~g~~~~l------t------~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
.. .....++++++ .+....+ . ... +...+.|+++++.+++....... . ....++.+
T Consensus 223 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~-~------~~~~~~~~ 292 (470)
T d2bgra1 223 AV---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-Y------SVMDICDY 292 (470)
T ss_dssp SC---CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-E------EEEEEEEE
T ss_pred cc---CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC-c------eEEEEEEe
Confidence 00 02356788887 3322111 1 122 34578999999866655432210 0 12356666
Q ss_pred cCCCceEEEeccCCCCccCC-ccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee
Q 007620 215 TTDGKLVRELCDLPPAEDIP-VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (595)
Q Consensus 215 d~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 293 (595)
|..++....+......+... ..+.. .....+.|.+++...+++.... ....+||+++. .++..+.
T Consensus 293 d~~tg~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~s~~---------dg~~~ly~~~~---~g~~~~~ 358 (470)
T d2bgra1 293 DESSGRWNCLVARQHIEMSTTGWVGR--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQI---DKKDCTF 358 (470)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSS--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEET---TCSCCEE
T ss_pred cCCCCcEEEEEEEeeeeeeccceeec--ccCCCceeeecCCCcEEEEecc---------CcCceeEEEec---cCCceee
Confidence 77777766653221111000 00000 1122456777776655554211 12346888786 6778888
Q ss_pred ccccCccccceeecCCCcEEEEEEeec---ccceEEEEEeCCCCCCCcEEEeecccccccCCCCCCCeeeCCCCCEEEEE
Q 007620 294 LHKLDLRFRSVSWCDDSLALVNETWYK---TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (595)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~---~~~~~L~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 370 (595)
|+.....+..+ ++.|+..++|..... ....+||.++++++ ...++|+..-..+. .+...+++||||++++..
T Consensus 359 lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~---~~~~s~~fSpdgky~~~~ 433 (470)
T d2bgra1 359 ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPER---CQYYSVSFSKEAKYYQLR 433 (470)
T ss_dssp SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTT---BCBEEEEECTTSSEEEEE
T ss_pred eccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC-CceeEecccccCCC---CCEEEEEECCCCCEEEEE
Confidence 88776665554 566666665554321 24558999999985 35566642110000 011127899999998877
Q ss_pred eeec
Q 007620 371 IKKE 374 (595)
Q Consensus 371 ~~~~ 374 (595)
....
T Consensus 434 ~s~~ 437 (470)
T d2bgra1 434 CSGP 437 (470)
T ss_dssp ECSB
T ss_pred ecCC
Confidence 6543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.49 E-value=7.8e-13 Score=131.03 Aligned_cols=190 Identities=14% Similarity=0.067 Sum_probs=130.2
Q ss_pred ccceEEcc-CCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
...+.||| ||++|||.+. .+||++++++|..++++. .. .+..+.|||||+.|++....
T Consensus 5 ~~~~~fSP~dG~~~a~~~~-----------g~v~v~d~~~~~~~~~~~-~~-----~v~~~~~spDg~~l~~~~~~---- 63 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSR-----------GQAFIQDVSGTYVLKVPE-PL-----RIRYVRRGGDTKVAFIHGTR---- 63 (360)
T ss_dssp GGEEEEEECGGGCEEEEET-----------TEEEEECTTSSBEEECSC-CS-----CEEEEEECSSSEEEEEEEET----
T ss_pred hhcccccCCCCCEEEEEEC-----------CeEEEEECCCCcEEEccC-CC-----CEEEEEECCCCCEEEEEEcC----
Confidence 44588999 9999999762 489999999999998853 22 46789999999999986321
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCCC-eeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~~-~~~~~~~SpDg~~l 189 (595)
+ ...|+++++ .|+.+++.... ....++|||||++|
T Consensus 64 -----------------~--------------------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l 100 (360)
T d1k32a3 64 -----------------E--------------------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100 (360)
T ss_dssp -----------------T--------------------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred -----------------C--------------------------CCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence 0 124777888 55777776543 55689999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcc
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (595)
++.... ..+++|+++++....+..... .....+.|+|||+. |++........
T Consensus 101 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~spdg~~-la~~~~~~~~~-- 152 (360)
T d1k32a3 101 VVANDR-------------FEIMTVDLETGKPTVIERSRE------------AMITDFTISDNSRF-IAYGFPLKHGE-- 152 (360)
T ss_dssp EEEETT-------------SEEEEEETTTCCEEEEEECSS------------SCCCCEEECTTSCE-EEEEEEECSST--
T ss_pred ceeccc-------------cccccccccccceeeeeeccc------------ccccchhhccceee-eeeeccccccc--
Confidence 988643 368899998776655432210 11346899999984 55542222211
Q ss_pred cccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEE
Q 007620 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (595)
Q Consensus 270 ~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (595)
........+++++. .+++...++........+.|+|||+.|++..
T Consensus 153 ~~~~~~~~~~v~d~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 153 TDGYVMQAIHVYDM---EGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp TCSCCEEEEEEEET---TTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeccccceeeecc---ccCceeeecccccccccccccCCCCEEEEEe
Confidence 11122345667776 4456666666566667789999999887754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.27 E-value=2.6e-09 Score=102.14 Aligned_cols=247 Identities=15% Similarity=0.076 Sum_probs=140.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|.+.|++ +++...-. +.+.......|||||++|+.... ....|.++|+++++.........
T Consensus 13 ~v~v~D~~----t~~~~~~i--~~g~~p~~va~spdG~~l~v~~~---------~~~~i~v~d~~t~~~~~~~~~~~--- 74 (301)
T d1l0qa2 13 NISVIDVT----SNKVTATI--PVGSNPMGAVISPDGTKVYVANA---------HSNDVSIIDTATNNVIATVPAGS--- 74 (301)
T ss_dssp EEEEEETT----TTEEEEEE--ECSSSEEEEEECTTSSEEEEEEG---------GGTEEEEEETTTTEEEEEEECSS---
T ss_pred EEEEEECC----CCeEEEEE--ECCCCceEEEEeCCCCEEEEEEC---------CCCEEEEEECCCCceeeeeeccc---
Confidence 38888998 66544332 23334677899999999865543 23578999999887654432222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
....+.|++|++.+++.... ...+.+++.
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 104 (301)
T d1l0qa2 75 --SPQGVAVSPDGKQVYVTNMA------------------------------------------------SSTLSVIDTT 104 (301)
T ss_dssp --SEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEETT
T ss_pred --cccccccccccccccccccc------------------------------------------------cceeeecccc
Confidence 34578999999987775221 112334444
Q ss_pred CCC-eeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 165 DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 165 ~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
+++ ...+..........++|||+++++..... ..+.+++..+.......... ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-------------~~ 159 (301)
T d1l0qa2 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVG-------------RS 159 (301)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECC-------------SS
T ss_pred cceeeeeccccccceEEEeecCCCeeeeeeccc------------cceeeeeccccceeeecccC-------------CC
Confidence 332 22333333345688999999998886432 25777887765543322111 11
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
...+.++|+++. ++.. ..+ ...+.+++. ...+...............|++++..++.... +...
T Consensus 160 ~~~~~~~~~~~~-~~~~-~~~----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~-~~~~ 223 (301)
T d1l0qa2 160 PKGIAVTPDGTK-VYVA-NFD----------SMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV-DKYF 223 (301)
T ss_dssp EEEEEECTTSSE-EEEE-ETT----------TTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEE-CSSC
T ss_pred ceEEEeeccccc-eeee-ccc----------ccccccccc---cceeeeecccccCCcceeeccccccccccccc-ccee
Confidence 234678888873 4332 111 112223232 22222222233334456789999986543321 2223
Q ss_pred eEEEEEeCCCCCCCcE-EE-eecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 324 TRTWLVCPGSKDVAPR-VL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 324 ~~L~~~d~~~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
..|+++|+.++ +.. .+ ....... +.++|||++|++...
T Consensus 224 ~~v~v~D~~t~--~~~~~~~~~~~~~~---------va~spdg~~l~va~~ 263 (301)
T d1l0qa2 224 NTVSMIDTGTN--KITARIPVGPDPAG---------IAVTPDGKKVYVALS 263 (301)
T ss_dssp CEEEEEETTTT--EEEEEEECCSSEEE---------EEECTTSSEEEEEET
T ss_pred eeeeeeecCCC--eEEEEEcCCCCEEE---------EEEeCCCCEEEEEEC
Confidence 47899999873 222 12 1222333 789999999887653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.15 E-value=4.7e-08 Score=96.59 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=44.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
......+||||++|++...... ....+||++|.++++........ ....+.|||||+.|++..
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~-----~~~~~v~v~D~~tg~~~~~~~~~------~~~~~a~SpDG~~l~va~ 84 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHH-----SAIIQQWVLDAGSGSILGHVNGG------FLPNPVAAHSGSEFALAS 84 (373)
T ss_pred CccccccCCCCCEEEEEccccc-----CCCceEEEEECCCCCEEEEEeCC------CCccEEEcCCCCEEEEEe
Confidence 3667789999999977543211 34578999999999865432211 123689999999998863
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.9e-08 Score=97.55 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=53.5
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|.+.+|.. .+....+..+.....+....|||||++|+..... ++.-.+|.++..++..+.+.....
T Consensus 14 ~~I~v~~~~~---~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~-------d~~i~~~~i~~~~~~~~~~~~~~~-- 81 (333)
T d1ri6a_ 14 QQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESAL-- 81 (333)
T ss_dssp TEEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred CcEEEEEEcC---CCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC-------CCeEEEEEEeCCCCcEEEeeeccc--
Confidence 3578888863 5554444433344468899999999998655432 334456655555555444432221
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
......+.|+|||+.|++.
T Consensus 82 -~~~p~~l~~spDg~~l~v~ 100 (333)
T d1ri6a_ 82 -PGSLTHISTDHQGQFVFVG 100 (333)
T ss_dssp -SSCCSEEEECTTSSEEEEE
T ss_pred -CCCceEEEEcCCCCEEeec
Confidence 1123468999999998876
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.12 E-value=8.5e-08 Score=91.16 Aligned_cols=272 Identities=9% Similarity=0.029 Sum_probs=150.1
Q ss_pred EEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCee
Q 007620 45 IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKI 124 (595)
Q Consensus 45 laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~ 124 (595)
.||++.. ....|.++|+++++..+...... ....+.|||||++|+....
T Consensus 3 ~~yV~~~--------~~~~v~v~D~~t~~~~~~i~~g~-----~p~~va~spdG~~l~v~~~------------------ 51 (301)
T d1l0qa2 3 FAYIANS--------ESDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANA------------------ 51 (301)
T ss_dssp EEEEEET--------TTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEG------------------
T ss_pred EEEEEEC--------CCCEEEEEECCCCeEEEEEECCC-----CceEEEEeCCCCEEEEEEC------------------
Confidence 4677653 23568899999998554433222 3457899999999876521
Q ss_pred eecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCCCCeEEEEEcccCccccc
Q 007620 125 QSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202 (595)
Q Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 202 (595)
....|.++|+ +++ .+.+........+.|++||+++++.....
T Consensus 52 ------------------------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 95 (301)
T d1l0qa2 52 ------------------------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS------ 95 (301)
T ss_dssp ------------------------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------
T ss_pred ------------------------------CCCEEEEEECCCCceeeeeecccccccccccccccccccccccc------
Confidence 0235677777 453 33343333346789999999988876432
Q ss_pred cCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEecc
Q 007620 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQP 282 (595)
Q Consensus 203 ~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d 282 (595)
..+.+++..+++........ .......++|||.. ++... .....+.+++
T Consensus 96 ------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~dg~~-~~~~~-----------~~~~~~~~~~ 144 (301)
T d1l0qa2 96 ------STLSVIDTTSNTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTN-----------NGDKTVSVIN 144 (301)
T ss_dssp ------TEEEEEETTTTEEEEEEECS-------------SSEEEEEECTTSSE-EEEEE-----------TTTTEEEEEE
T ss_pred ------ceeeecccccceeeeecccc-------------ccceEEEeecCCCe-eeeee-----------ccccceeeee
Confidence 36778888766543322211 11234678899884 32221 1112334444
Q ss_pred CCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeee
Q 007620 283 AEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTR 360 (595)
Q Consensus 283 ~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~ 360 (595)
. ..+..............+.|+||+..++.... ... .+...+.... ....... ..... ..+
T Consensus 145 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~ 207 (301)
T d1l0qa2 145 T---VTKAVINTVSVGRSPKGIAVTPDGTKVYVANF-DSM--SISVIDTVTN--SVIDTVKVEAAPSG---------IAV 207 (301)
T ss_dssp T---TTTEEEEEEECCSSEEEEEECTTSSEEEEEET-TTT--EEEEEETTTT--EEEEEEECSSEEEE---------EEE
T ss_pred c---cccceeeecccCCCceEEEeeccccceeeecc-ccc--ccccccccce--eeeecccccCCcce---------eec
Confidence 3 21222222223334456789999887655432 112 4445555442 2221211 11222 678
Q ss_pred CCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccceeeEEeeeCCCcccccccCCE
Q 007620 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLK 440 (595)
Q Consensus 361 ~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 440 (595)
+++|+.+++...+.. ...++ .+|+.+++........ ..+.. ..|++||++
T Consensus 208 ~~~g~~~~v~~~~~~--~~~v~----------------v~D~~t~~~~~~~~~~-----~~~~~-------va~spdg~~ 257 (301)
T d1l0qa2 208 NPEGTKAYVTNVDKY--FNTVS----------------MIDTGTNKITARIPVG-----PDPAG-------IAVTPDGKK 257 (301)
T ss_dssp CTTSSEEEEEEECSS--CCEEE----------------EEETTTTEEEEEEECC-----SSEEE-------EEECTTSSE
T ss_pred cccccccccccccce--eeeee----------------eeecCCCeEEEEEcCC-----CCEEE-------EEEeCCCCE
Confidence 899998877654321 11232 4677777644332211 11222 468999998
Q ss_pred EEEEEecCCCcceEEEEeCCCCce
Q 007620 441 ILTSKESKTEITQYHILSWPLKKS 464 (595)
Q Consensus 441 l~~~~~s~~~p~~l~~~d~~~~~~ 464 (595)
++++... -..+.++|+++++.
T Consensus 258 l~va~~~---~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 258 VYVALSF---CNTVSVIDTATNTI 278 (301)
T ss_dssp EEEEETT---TTEEEEEETTTTEE
T ss_pred EEEEECC---CCeEEEEECCCCeE
Confidence 8766533 24689999887764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-07 Score=92.81 Aligned_cols=234 Identities=13% Similarity=0.133 Sum_probs=130.5
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE-ecccCCCccccccccceEEecCCcE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
+++..+.....+...+|||||++||-.. ++ .|.++|+..+... .+...........+..+.|+|||+.
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~latg~---------dg--~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~ 111 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRHVYTGG---------KG--CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC---------BS--EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred eEEEECCCCCcEEEEEECCCCCEEEEEE---------CC--EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE
Confidence 5555555555688899999999987532 22 4666688765322 1111010011124678999999998
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-Ce---eecC-CCC
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA---KDFG-TPA 175 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~---~~lt-~~~ 175 (595)
|+....+ ..|.++|+.. +. ..+. ...
T Consensus 112 l~s~~~d-------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~ 142 (337)
T d1gxra_ 112 LIVGGEA-------------------------------------------------STLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp EEEEESS-------------------------------------------------SEEEEEECCCC--EEEEEEECSSS
T ss_pred EEEeecc-------------------------------------------------cccccccccccccccccccccccc
Confidence 8764211 1233344421 11 1122 122
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
......|+||+..++..... ..+.++++.+++........ ......+.|++++..
T Consensus 143 ~v~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGH------------TDGASCIDISNDGTK 197 (337)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCC------------SSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccc-------------cccccccccccccccccccc------------ccccccccccccccc
Confidence 34577899999988766532 36888898876654432211 011235678888873
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCC
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~ 335 (595)
++.. .....+.++++ ..++..........+..+.|+|++..++... .++ .+.++|+.++
T Consensus 198 -~~~~------------~~d~~v~i~d~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~d~--~i~i~d~~~~- 256 (337)
T d1gxra_ 198 -LWTG------------GLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGM--ESS--NVEVLHVNKP- 256 (337)
T ss_dssp -EEEE------------ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTSS-
T ss_pred -cccc------------ccccccccccc---ccceeecccccccceEEEEEcccccccceec--ccc--cccccccccc-
Confidence 3322 11235666675 3233323333445567789999998877643 223 5667787763
Q ss_pred CCcEEEe--ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 336 VAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 336 ~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
+..... ...+.. +.|+++|+.++...
T Consensus 257 -~~~~~~~~~~~i~~---------v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 257 -DKYQLHLHESCVLS---------LKFAYCGKWFVSTG 284 (337)
T ss_dssp -CEEEECCCSSCEEE---------EEECTTSSEEEEEE
T ss_pred -ccccccccccccce---------EEECCCCCEEEEEe
Confidence 322222 122222 78999999876544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.05 E-value=1e-07 Score=93.29 Aligned_cols=312 Identities=12% Similarity=0.103 Sum_probs=156.2
Q ss_pred EEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCcc
Q 007620 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (595)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~ 116 (595)
..||||+++++...... ....+||++|+++|+........ ....+.|||||+.|++.....
T Consensus 8 a~spdg~~~~v~~~~~~-----~~~~~v~v~D~~tg~~~~~~~~g------~~~~~a~SpDg~~l~v~~~~~-------- 68 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHF-----AAVTQQFVIDGEAGRVIGMIDGG------FLPNPVVADDGSFIAHASTVF-------- 68 (355)
T ss_dssp CCCCCTTEEEEEECGGG-----CSSEEEEEEETTTTEEEEEEEEC------SSCEEEECTTSSCEEEEEEEE--------
T ss_pred eeCCCCCEEEEEecccC-----CCcCeEEEEECCCCcEEEEEECC------CCCceEEcCCCCEEEEEeCCC--------
Confidence 45899999855432211 23578999999999864433221 223689999999988863210
Q ss_pred ccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeee-cC--CC------CeeeeeEECCCC
Q 007620 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG--TP------AVYTAVEPSPDQ 186 (595)
Q Consensus 117 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-lt--~~------~~~~~~~~SpDg 186 (595)
. +.. .......|.++|+ +++... +. .. .....+.|||||
T Consensus 69 -------------~-----~~~-------------~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 69 -------------S-----RIA-------------RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp -------------E-----ETT-------------EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred -------------c-----ccc-------------ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence 0 000 0012356788888 555432 21 11 112367899999
Q ss_pred CeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCc-cCCccccccccCCCCceeecCCCeeEEEEEeecC
Q 007620 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (595)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~ 265 (595)
+++++..... ...+.+++..+++.......+... ..+. .....+.+++||+. +++. ..+.
T Consensus 118 ~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~dg~~-~~v~-~~~~ 178 (355)
T d2bbkh_ 118 KTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHIFPT------APDTFFMHCRDGSL-AKVA-FGTE 178 (355)
T ss_dssp SEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEEEEE------ETTEEEEEETTSCE-EEEE-CCSS
T ss_pred CeeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceEeec------CCcceEEEcCCCCE-EEEE-ecCC
Confidence 9998875432 236778888766543322211100 0000 00113456777763 3221 1111
Q ss_pred CCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEe--e
Q 007620 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--D 343 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~--~ 343 (595)
..+.+++. ... .. ........+.+++++..+++... . ..++++++.++ ....+. +
T Consensus 179 ----------~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~v~~~~~~--~~~~~~~~~ 235 (355)
T d2bbkh_ 179 ----------GTPEITHT--EVF-HP----EDEFLINHPAYSQKAGRLVWPTY--T--GKIHQIDLSSG--DAKFLPAVE 235 (355)
T ss_dssp ----------SCCEEEEC--CCC-SC----TTSCBCSCCEEETTTTEEEEEBT--T--SEEEEEECTTS--SCEECCCEE
T ss_pred ----------CeEEEEec--ccc-cc----eecceeeeccccCCCCeEEEecC--C--CeEEEEecCCC--cEEEEeccC
Confidence 01111111 000 00 01112334567777766665431 2 26888888873 334331 1
Q ss_pred cccc---cccCCC-CCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCccccc
Q 007620 344 RVFE---NVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (595)
Q Consensus 344 ~~~~---~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (595)
.... .....| +...+.++++|+.+++....... . ........+..+|+.+++....+...
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~---~--------~~~~~~~~v~v~d~~t~~~~~~~~~~----- 299 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE---W--------RHKTASRFVVVLDAKTGERLAKFEMG----- 299 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT---T--------CTTSCEEEEEEEETTTCCEEEEEEEE-----
T ss_pred CcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc---e--------eecCCCCeEEEEeCCCCcEEEEecCC-----
Confidence 1110 000011 22347788899888776643210 0 01111223445787777654332211
Q ss_pred eeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCcee
Q 007620 420 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (595)
Q Consensus 420 ~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~ 465 (595)
..+. ...|++||+++++..... ...|+++|+.+++..
T Consensus 300 ~~~~-------~~a~spDG~~~l~v~~~~--d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 300 HEID-------SINVSQDEKPLLYALSTG--DKTLYIHDAESGEEL 336 (355)
T ss_dssp EEEC-------EEEECCSSSCEEEEEETT--TTEEEEEETTTCCEE
T ss_pred CCEE-------EEEEcCCCCeEEEEEECC--CCEEEEEECCCCCEE
Confidence 1111 246899998765554433 367999999887653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.02 E-value=1.9e-07 Score=90.11 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=127.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecc-cCCCccccccccceEEecCCcEEEEEecCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt-~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~ 110 (595)
......++|+|+.|||... ..++++++++++...+. .... .+..+.|+|||++|+....+
T Consensus 19 ~~~~~a~~~~g~~l~~~~~-----------~~v~i~~~~~~~~~~~~~~H~~-----~v~~~~~sp~g~~latg~~d--- 79 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNG-----------TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVH--- 79 (311)
T ss_dssp CCCCCEECTTSSEEEEEET-----------TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETT---
T ss_pred CeEEEEEcCCCCEEEEEeC-----------CEEEEEECCCCceeEEEcCCCC-----CEEEEEEeCCCCeEeccccC---
Confidence 3456789999999999742 45888899887654443 3333 57899999999988764211
Q ss_pred CCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC--ee-ecC-CCCeeeeeEECCC
Q 007620 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AK-DFG-TPAVYTAVEPSPD 185 (595)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~--~~-~lt-~~~~~~~~~~SpD 185 (595)
..|.++++ .++ .+ .+. ....+..++|+||
T Consensus 80 ----------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d 113 (311)
T d1nr0a1 80 ----------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113 (311)
T ss_dssp ----------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------ceEeeeeeeccccccccccccccCcccccccccc
Confidence 12334444 221 11 121 1234567899999
Q ss_pred CCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeec
Q 007620 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (595)
Q Consensus 186 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (595)
|+.|+....... ..+.+|+.+.++. ..+... ......+.|+|+++..++.. .
T Consensus 114 ~~~l~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~h-------------~~~v~~v~~~~~~~~~l~sg--s- 166 (311)
T d1nr0a1 114 SKRIAAVGEGRE-----------RFGHVFLFDTGTSNGNLTGQ-------------ARAMNSVDFKPSRPFRIISG--S- 166 (311)
T ss_dssp SCEEEEEECCSS-----------CSEEEEETTTCCBCBCCCCC-------------SSCEEEEEECSSSSCEEEEE--E-
T ss_pred cccccccccccc-----------cccccccccccccccccccc-------------ccccccccccccceeeeccc--c-
Confidence 999988764321 2456777765432 222111 11134577899987433221 1
Q ss_pred CCCcccccCCcceEEeccCCCCCCCCceecc-ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEEee
Q 007620 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l~~ 343 (595)
....+.+++. ..++..... .....+..+.|+||+..++... .++ .+.++|+..+ .....+.
T Consensus 167 ---------~d~~i~i~d~---~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~--~d~--~v~~~d~~~~--~~~~~~~ 228 (311)
T d1nr0a1 167 ---------DDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG--GDG--TIVLYNGVDG--TKTGVFE 228 (311)
T ss_dssp ---------TTSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTTC--CEEEECB
T ss_pred ---------cccccccccc---cccccccccccccccccccccCcccccccccc--ccc--cccccccccc--ccccccc
Confidence 1234666675 322322222 2244567889999999877653 223 4566677663 2222221
Q ss_pred cccccccC-CCCCCCeeeCCCCCEEEEEe
Q 007620 344 RVFENVYS-DPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 344 ~~~~~~~~-~~~~~~~~~~~dg~~l~~~~ 371 (595)
........ ......+.|+++|+.|+...
T Consensus 229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs 257 (311)
T d1nr0a1 229 DDSLKNVAHSGSVFGLTWSPDGTKIASAS 257 (311)
T ss_dssp CTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccCCCCCEEEEEe
Confidence 11000000 00001278999999877554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.98 E-value=3.4e-07 Score=88.26 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=90.6
Q ss_pred eeeEEEecCCCCCCCCcee-eecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
..|.+.|++ +++... |.....+.....++|||||++|+.+.. ....|+++|+++++...-......
T Consensus 11 ~~v~v~D~~----s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---------~~~~v~v~D~~t~~~~~~~~~~~~ 77 (337)
T d1pbyb_ 11 DKLVVIDTE----KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---------KSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETT----TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---------TTTEEEEEETTTCCEEEEEECCBT
T ss_pred CEEEEEECC----CCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEEEecCCC
Confidence 468899998 665443 432122335678999999998765542 236799999999886543322211
Q ss_pred c-ccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 84 C-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 84 ~-~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
. .......+.|+||++.++........ .. .........+.++
T Consensus 78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~-------------------------~~------------~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 78 EERVKSLFGAALSPDGKTLAIYESPVRL-------------------------EL------------THFEVQPTRVALY 120 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEE-------------------------CS------------SCEEECCCEEEEE
T ss_pred cccccceeeEEEcCCCcEEEEeecCCcc-------------------------ee------------eeccccccceeec
Confidence 0 01123478999999998876321000 00 0000123456677
Q ss_pred cC-CCCe-eecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE
Q 007620 163 SL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (595)
Q Consensus 163 d~-~g~~-~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 222 (595)
|. +++. +.+........+.|||||++++.... +..++|..+++..
T Consensus 121 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---------------~~~~~d~~~~~~~ 167 (337)
T d1pbyb_ 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR---------------DLHVMDPEAGTLV 167 (337)
T ss_dssp ETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS---------------SEEEEETTTTEEE
T ss_pred cccCCeEEEeccccCCceEEEEcCCCCEEEEEcC---------------CcceeeeecCcEE
Confidence 77 4543 33333344557899999999987632 4567787765543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.1e-07 Score=89.38 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=135.8
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
|.|+|+...........+........+...+|||||+.|+.... + ..|.++++.....+........ .
T Consensus 74 V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~--------d--g~i~iwd~~~~~~~~~~~~~~~--~ 141 (337)
T d1gxra_ 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE--------A--STLSIWDLAAPTPRIKAELTSS--A 141 (337)
T ss_dssp EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES--------S--SEEEEEECCCC--EEEEEEECS--S
T ss_pred EEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec--------c--cccccccccccccccccccccc--c
Confidence 77889873211122223222222335778999999998876542 2 4566668765443322111110 0
Q ss_pred ccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-C
Q 007620 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D 165 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~ 165 (595)
..+..+.|+|++..|+....+ ..+.++++ +
T Consensus 142 ~~v~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~~~~~~~ 172 (337)
T d1gxra_ 142 PACYALAISPDSKVCFSCCSD-------------------------------------------------GNIAVWDLHN 172 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEETTT
T ss_pred ccccccccccccccccccccc-------------------------------------------------cccccccccc
Confidence 134577899999987764211 12333444 2
Q ss_pred CCeee-cC-CCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC
Q 007620 166 GTAKD-FG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (595)
Q Consensus 166 g~~~~-lt-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (595)
++... .. .......++|+|+++.+++.... ..+.+||+.+++........ ..
T Consensus 173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-------------~~ 226 (337)
T d1gxra_ 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------SQ 226 (337)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SC
T ss_pred cccccccccccccccccccccccccccccccc-------------ccccccccccceeecccccc-------------cc
Confidence 32221 11 22345578999999998887542 36889998766543322111 11
Q ss_pred CCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccc
Q 007620 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (595)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (595)
...+.|+|+++. ++.. . ....+.+++. ..++..........+..+.|+|||..|+... .++
T Consensus 227 i~~l~~~~~~~~-l~~~-~-----------~d~~i~i~d~---~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s--~Dg- 287 (337)
T d1gxra_ 227 IFSLGYCPTGEW-LAVG-M-----------ESSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTG--KDN- 287 (337)
T ss_dssp EEEEEECTTSSE-EEEE-E-----------TTSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEE--TTS-
T ss_pred eEEEEEcccccc-ccee-c-----------cccccccccc---cccccccccccccccceEEECCCCCEEEEEe--CCC-
Confidence 235778888873 3221 1 1234566665 3334433334455677899999999877653 223
Q ss_pred eEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 324 TRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 324 ~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
.|.++|+.++ +...... ..+.. +.|+++|++|+...
T Consensus 288 -~i~iwd~~~~--~~~~~~~~~~~v~~---------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 288 -LLNAWRTPYG--ASIFQSKESSSVLS---------CDISVDDKYIVTGS 325 (337)
T ss_dssp -EEEEEETTTC--CEEEEEECSSCEEE---------EEECTTSCEEEEEE
T ss_pred -eEEEEECCCC--CEEEEccCCCCEEE---------EEEeCCCCEEEEEe
Confidence 5777788773 3222222 22322 78999999876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.91 E-value=1.8e-07 Score=94.87 Aligned_cols=83 Identities=14% Similarity=-0.040 Sum_probs=51.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC- 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~- 84 (595)
.+.|.|++ +++..... +.+..+...+|||||++||.. .+ ...|.++|+++++...+...+...
T Consensus 43 ~v~v~D~~----t~~v~~~~--~~g~~~~~v~fSpDG~~l~~~-s~---------dg~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 43 QIALIDGS----TYEIKTVL--DTGYAVHISRLSASGRYLFVI-GR---------DGKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp EEEEEETT----TCCEEEEE--ECSSCEEEEEECTTSCEEEEE-ET---------TSEEEEEETTSSSCCEEEEEECCSE
T ss_pred EEEEEECC----CCcEEEEE--eCCCCeeEEEECCCCCEEEEE-cC---------CCCEEEEEeeCCCceEEEEEecCCC
Confidence 46788887 66655443 334468899999999998654 33 246778899887654332212110
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+.++.|||||++|+..
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs 126 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAG 126 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEE
T ss_pred CCCeEEecccCCCCCEEEEE
Confidence 00012255678899998775
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.90 E-value=1.2e-07 Score=93.88 Aligned_cols=312 Identities=6% Similarity=-0.095 Sum_probs=156.1
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC-CCCCC
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDP 112 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~-~~~~~ 112 (595)
.....+|||++.+....... .+..+||++|.++++....+.... ...+.|+|||+.|++.... .+..
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~-----~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~~- 90 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYF-----AGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARSA- 90 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTT-----CSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTTT-
T ss_pred cccccCCCCcceeEEeeccC-----CCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCcccc-
Confidence 34456888987654432211 356789999999998777654332 2368999999999986321 0000
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCee-ec--CCC------CeeeeeEE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DF--GTP------AVYTAVEP 182 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~l--t~~------~~~~~~~~ 182 (595)
.|. +...|.++|. +++.. .+ ... .....+.|
T Consensus 91 ----------------~g~-----------------------~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~ 131 (368)
T d1mdah_ 91 ----------------KGK-----------------------RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp ----------------SSS-----------------------EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred ----------------ccc-----------------------cCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence 010 1346778888 55533 22 111 11236899
Q ss_pred CCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccC-CCCceeecCCCeeEEEEE
Q 007620 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVE 261 (595)
Q Consensus 183 SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~wspdg~~~l~~~~ 261 (595)
||||++|++.... ...+.+||+.+++.......+.... ....+ ...+..++||+ +.++.
T Consensus 132 SpDGk~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~Dg~--~~~~~ 191 (368)
T d1mdah_ 132 CASSACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYLGSCPAS--LAASD 191 (368)
T ss_dssp CTTSSCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEECCCCTTS--CEEEE
T ss_pred CCCCCEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEEEcCCCC--EEEEE
Confidence 9999999987532 2378899998776544332221100 00000 11234456665 22221
Q ss_pred eecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 262 ~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
..+.+. ..+. .. ...............+.+++..+... ..+++.++..+. ....+
T Consensus 192 ~~~~~~---------~~~~-~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~v~~~~~~~~--~~~~~ 246 (368)
T d1mdah_ 192 LAAAPA---------AAGI-VG-------AQCTGAQNCSSQAAQANYPGMLVWAV------ASSILQGDIPAA--GATMK 246 (368)
T ss_dssp CCSSCC---------CCEE-CC-------CCSCTTSCBCSCCEEETTTTEEEECB------SSCCEEEECCSS--CCEEE
T ss_pred ecCCce---------eeee-ee-------cccccccccceeecccccCcEEEEec------CCCEEEEeecCC--ceEEE
Confidence 111110 0000 00 00011112223455667777654322 125677777663 33433
Q ss_pred eecc--cc---cccCCC-CCCCeeeCCCCCEEEEEeeecCCcccEEEEecCCCCCCCCcceeEeeecCCCceeeeeecCc
Q 007620 342 FDRV--FE---NVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (595)
Q Consensus 342 ~~~~--~~---~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (595)
.... .. .....| +...+.++++++.+|+...+... ........+..+|.++++....+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~------------~~~~~~~~v~v~D~~t~~~~~~~~~~- 313 (368)
T d1mdah_ 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR------------SCLAAAENTSSVTASVGQTSGPISNG- 313 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS------------CTTSCEEEEEEEESSSCCEEECCEEE-
T ss_pred eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc------------eeecCCceEEEEECCCCcEeEEecCC-
Confidence 2111 00 000011 22346788888887776543210 00111123445788777644322110
Q ss_pred cccceeeEEeeeCCCcccccccCCEEEEEEecCCCcceEEEEeCCCCceeeE
Q 007620 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (595)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~L 467 (595)
..+. ...||+||+.++|...... ..|+++|+.+++..+-
T Consensus 314 ----~~~~-------~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 314 ----HDSD-------AIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSS 352 (368)
T ss_dssp ----EEEC-------EEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEE
T ss_pred ----Ccee-------EEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 1111 2468999987655554333 4699999988875443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.90 E-value=2.7e-07 Score=93.19 Aligned_cols=84 Identities=14% Similarity=-0.017 Sum_probs=51.7
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC- 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~- 84 (595)
.|.|.|+. +++...-. +.+..+....|||||++|+ ++.+ + ..|.++|+++++...+.......
T Consensus 43 ~v~vwD~~----t~~~~~~l--~~g~~~~~vafSPDGk~l~-~~~~-------d--~~v~vwd~~t~~~~~~~~i~~~~~ 106 (426)
T d1hzua2 43 QIALVDGD----SKKIVKVI--DTGYAVHISRMSASGRYLL-VIGR-------D--ARIDMIDLWAKEPTKVAEIKIGIE 106 (426)
T ss_dssp EEEEEETT----TCSEEEEE--ECCSSEEEEEECTTSCEEE-EEET-------T--SEEEEEETTSSSCEEEEEEECCSE
T ss_pred EEEEEECC----CCcEEEEE--eCCCCeeEEEECCCCCEEE-EEeC-------C--CCEEEEEccCCceeEEEEEeCCCC
Confidence 46788887 66554322 3444578899999999875 4443 2 46778899888754432211110
Q ss_pred ccccccceEEecCCcEEEEEe
Q 007620 85 LNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~~ 105 (595)
......++.|||||++|+...
T Consensus 107 ~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 107 ARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp EEEEEECCSTTCTTTEEEEEE
T ss_pred CcceEEeeeecCCCCEEEEee
Confidence 001123677889999987753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.89 E-value=3.6e-07 Score=92.31 Aligned_cols=60 Identities=5% Similarity=-0.090 Sum_probs=43.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+.+++|.+.+++++.+ ....|.++|+++++......... .+..+.+||||++|+..
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~--------~dg~v~vwD~~t~~~~~~l~~g~-----~~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLR--------DAGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVI 79 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEET--------TTTEEEEEETTTCSEEEEEECCS-----SEEEEEECTTSCEEEEE
T ss_pred CCCcccccCCCCeEEEEEEc--------CCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEE
Confidence 45567899999888888764 34678888999998544333222 35689999999998765
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.87 E-value=1.1e-07 Score=93.13 Aligned_cols=293 Identities=11% Similarity=-0.024 Sum_probs=136.5
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc-
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~- 83 (595)
..+|+.|+. +|+..... +.+ ....++|||||++|++................|+++|+++++..........
T Consensus 28 ~~v~v~D~~----tg~~~~~~--~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 28 TQQFVIDGE----AGRVIGMI--DGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp EEEEEEETT----TTEEEEEE--EEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECC----CCcEEEEE--ECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 459999987 66554322 233 3447899999999988764311000001235789999999886544322111
Q ss_pred --cccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCcc-ceEEeec-ceE
Q 007620 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES-LFDYYTT-AQL 159 (595)
Q Consensus 84 --~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l 159 (595)
........+.|+|||+.+++......... .......+..+....... .......... ....... ..+
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~dg~~~ 171 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV-GVVDLEGKAFKRMLDVPD--------CYHIFPTAPDTFFMHCRDGSLA 171 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEE-EEEETTTTEEEEEEECCS--------EEEEEEEETTEEEEEETTSCEE
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCcee-eeeecCCCcEeeEEecCC--------cceEeecCCcceEEEcCCCCEE
Confidence 11112346899999999887532211100 000011111111000000 0000000000 0111111 222
Q ss_pred EEEcC-CCCeeecC--C-----CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCc
Q 007620 160 VLGSL-DGTAKDFG--T-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (595)
Q Consensus 160 ~~~d~-~g~~~~lt--~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~ 231 (595)
++... .+....+. . ........+++++..+++... ...++++++.++....+.......
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-------------TGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp EEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-------------TSEEEEEECTTSSCEECCCEESSC
T ss_pred EEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC-------------CCeEEEEecCCCcEEEEeccCCcc
Confidence 22222 22222211 0 012234567778777777643 237889998877665543221110
Q ss_pred cCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCc
Q 007620 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~ 311 (595)
...........+...+.+++|+.. +++. ..+... .........+.++|. ..++.............+.|||||+
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~-~~~~-~~~~~~-~~~~~~~~~v~v~d~---~t~~~~~~~~~~~~~~~~a~spDG~ 312 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDR-IYLL-VDQRDE-WRHKTASRFVVVLDA---KTGERLAKFEMGHEIDSINVSQDEK 312 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTE-EEEE-EEECCT-TCTTSCEEEEEEEET---TTCCEEEEEEEEEEECEEEECCSSS
T ss_pred cceEeeeeeccceEEEEEeCCCCe-EEEE-eccCCc-eeecCCCCeEEEEeC---CCCcEEEEecCCCCEEEEEEcCCCC
Confidence 000000000012235778889874 4443 222211 111122346777785 3234333222334466789999998
Q ss_pred EEEEEEeecccceEEEEEeCCCC
Q 007620 312 ALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 312 ~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.+++...... ..|+++|+.++
T Consensus 313 ~~l~v~~~~d--~~i~v~D~~tg 333 (355)
T d2bbkh_ 313 PLLYALSTGD--KTLYIHDAESG 333 (355)
T ss_dssp CEEEEEETTT--TEEEEEETTTC
T ss_pred eEEEEEECCC--CEEEEEECCCC
Confidence 6444332222 37899999884
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.85 E-value=1.3e-07 Score=93.52 Aligned_cols=94 Identities=14% Similarity=-0.035 Sum_probs=59.3
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc-
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~- 83 (595)
..||+.|.. +++....+... ....+.|||||+.|++................|+++|+.+++.......+..
T Consensus 46 ~~~~~~d~~----~~~~~~~~~~~---~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 46 TENWVSCAG----CGVTLGHSLGA---FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEEETT----TTEEEEEEEEC---TTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred ceEEEEeCC----CCcEEEEEeCC---CCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 469999987 77776665322 2447999999999999765311000001235699999999886554322211
Q ss_pred --cccccccceEEecCCcEEEEEe
Q 007620 84 --CLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 84 --~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
........+.|||||++|++..
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~ 142 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEE
T ss_pred eecccCCccceEECCCCCEEEEEe
Confidence 0111234789999999998863
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=2.9e-06 Score=81.45 Aligned_cols=38 Identities=3% Similarity=-0.033 Sum_probs=26.0
Q ss_pred ccccccCCEEEEEEecCCCcceEEEEeCCCCceeeEecC
Q 007620 432 EDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 470 (595)
Q Consensus 432 ~~~s~d~~~l~~~~~s~~~p~~l~~~d~~~~~~~~Lt~~ 470 (595)
..|||||++|++..+ ...--.+|.+|..+|+++++...
T Consensus 281 ~a~spDGk~l~va~~-~~~~v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 281 FNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp EEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCEEEEEEC-CCCeEEEEEEECCCCcEEEEEec
Confidence 468999998766543 33334467778888888877655
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.82 E-value=3.5e-07 Score=88.50 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=41.1
Q ss_pred eEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
|++|++|++|+.... ..+|.++|+++++.......+.. .....+.|+|||+.|++.
T Consensus 2 ~a~~~~~~~l~~~~~----------~~~v~v~D~~t~~~~~t~~~~~~---~~p~~l~~spDG~~l~v~ 57 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY----------PNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVL 57 (346)
T ss_dssp CCCCTTCEEEEEEET----------TTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEE
T ss_pred ccCCCCCcEEEEEcC----------CCEEEEEECCCCCEEEEEEcCCC---CCcceEEECCCCCEEEEE
Confidence 789999999877653 36799999999986543332321 134689999999988775
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.81 E-value=1.5e-06 Score=83.46 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=123.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceE--e-cccCCC
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--P-LFESPD 82 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~--~-lt~~~~ 82 (595)
.++++|+.+ ....+.++++. ..+...+|||||++||-... ...|.++++.+++.. . +.....
T Consensus 39 ~v~i~~~~~---~~~~~~~~~H~--~~v~~~~~sp~g~~latg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 39 SVYTVPVGS---LTDTEIYTEHS--HQTTVAKTSPSGYYCASGDV----------HGNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp EEEEEETTC---SSCCEEECCCS--SCEEEEEECTTSSEEEEEET----------TSEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEEECCC---CceeEEEcCCC--CCEEEEEEeCCCCeEecccc----------CceEeeeeeeccccccccccccccC
Confidence 578899972 33445555333 35889999999998875432 245666688766532 1 211122
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.+..+.|+||++.|+...... ...+.++
T Consensus 104 -----~v~~v~~s~d~~~l~~~~~~~-----------------------------------------------~~~~~v~ 131 (311)
T d1nr0a1 104 -----PVKDISWDSESKRIAAVGEGR-----------------------------------------------ERFGHVF 131 (311)
T ss_dssp -----CEEEEEECTTSCEEEEEECCS-----------------------------------------------SCSEEEE
T ss_pred -----ccccccccccccccccccccc-----------------------------------------------ccccccc
Confidence 467899999999887753110 0112223
Q ss_pred cC-CCC-eeecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 163 SL-DGT-AKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 163 d~-~g~-~~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
++ .++ ...+.. ...+..++|+|+|++++++.... ..+.+||+.+++........
T Consensus 132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d------------~~i~i~d~~~~~~~~~~~~~----------- 188 (311)
T d1nr0a1 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD------------NTVAIFEGPPFKFKSTFGEH----------- 188 (311)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT------------SCEEEEETTTBEEEEEECCC-----------
T ss_pred ccccccccccccccccccccccccccceeeecccccc------------cccccccccccccccccccc-----------
Confidence 33 232 223322 23456789999999866654322 36889998876654432110
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-cc-------ccCccccceeecCCCc
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH-------KLDLRFRSVSWCDDSL 311 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~-------~~~~~~~~~~wspDg~ 311 (595)
......+.|+|+++. ++.. . ....+.+++. .+ +.... +. .....+..+.|+||+.
T Consensus 189 -~~~i~~v~~~p~~~~-l~~~-~-----------~d~~v~~~d~--~~-~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~ 251 (311)
T d1nr0a1 189 -TKFVHSVRYNPDGSL-FAST-G-----------GDGTIVLYNG--VD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251 (311)
T ss_dssp -SSCEEEEEECTTSSE-EEEE-E-----------TTSCEEEEET--TT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred -cccccccccCccccc-cccc-c-----------cccccccccc--cc-ccccccccccccccccccccccccccCCCCC
Confidence 011235789999873 3322 1 1234555554 12 22211 11 1123456789999999
Q ss_pred EEEEEEeecccceEEEEEeCCCC
Q 007620 312 ALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 312 ~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
.|+... .++ .|.++|+.++
T Consensus 252 ~l~tgs--~Dg--~v~iwd~~t~ 270 (311)
T d1nr0a1 252 KIASAS--ADK--TIKIWNVATL 270 (311)
T ss_dssp EEEEEE--TTS--EEEEEETTTT
T ss_pred EEEEEe--CCC--eEEEEECCCC
Confidence 877653 223 5777788773
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.75 E-value=3.7e-06 Score=82.43 Aligned_cols=94 Identities=14% Similarity=-0.106 Sum_probs=57.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..||+.|.+ +|+...- ++.+ ....+.|||||++|++.......-........|+++|+.+++...........
T Consensus 47 ~~v~v~D~~----tg~~~~~--~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 119 (373)
T d2madh_ 47 IQQWVLDAG----SGSILGH--VNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred ceEEEEECC----CCCEEEE--EeCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc
Confidence 468999987 6665542 2333 34479999999999987653210000012356889999999876554333211
Q ss_pred c---cccccceEEecCCcEEEEEe
Q 007620 85 L---NAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 85 ~---~~~~~~~~Wspdg~~l~~~~ 105 (595)
. ......+.|++|++.+++..
T Consensus 120 ~~~~~~~~~~~~~s~dg~~~~v~~ 143 (373)
T d2madh_ 120 RFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred eeEeccCCCcEEEEeCCCcEEEEE
Confidence 0 00123578999999887753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.70 E-value=6.6e-06 Score=77.75 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=40.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||++||-.+. + ..|.++|+++++..+...... ...+..+.|+|+|+.++..
T Consensus 14 ~V~~l~~s~dg~~l~s~s~--------D--g~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~ 73 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADA--------E--GHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVS 73 (299)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEE
T ss_pred CcEEEEECCCCCEEEEEcC--------C--CeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeeccc
Confidence 5888999999998765432 2 346666999888665543221 1246789999999865443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.69 E-value=8.2e-06 Score=70.10 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=104.1
Q ss_pred cceEEEEcCC--CCeeecCCCCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccC
Q 007620 156 TAQLVLGSLD--GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 156 ~~~l~~~d~~--g~~~~lt~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~ 233 (595)
...||.+++. |+..+|..+.-.+-++..-|++.|+|+.... .++.+|-+++|+.++|+..|.
T Consensus 81 ~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase------------d~~~LYviegGklrkL~~vPp---- 144 (313)
T d2hu7a1 81 QHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLPG---- 144 (313)
T ss_dssp CEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEESS----
T ss_pred eeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC------------CceEEEEEeCCceeeeccCCC----
Confidence 3568899996 8988888776445556667899999997543 267778889999999987752
Q ss_pred CccccccccCCCCceeecC--CCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCccccceeecCCCc
Q 007620 234 PVCYNSVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspd--g~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~~~~wspDg~ 311 (595)
+.+-.| ++. |.-+....++ +..+++.|+ ..|..+.++..++++..+..+++.+
T Consensus 145 -------------FsFVtDI~~d~-I~G~g~~~g~--------~~sfF~adl---~SG~lri~tpkeGS~~~ay~~~gnK 199 (313)
T d2hu7a1 145 -------------FGFVSDIRGDL-IAGLGFFGGG--------RVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMK 199 (313)
T ss_dssp -------------CEEEEEEETTE-EEEEEEEETT--------EEEEEEEET---TTEEEEEECCSSEEEEEEEECTTSC
T ss_pred -------------cceEEeccCCe-EEEEeeecCC--------cceEEEEec---ccCCEEEecCCCCcccceeEccCce
Confidence 222222 221 2111111111 112455564 4568888888888999999999887
Q ss_pred EEEEEEeecccceEEEEEeCCCCCCCcEEE-e-ecccccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEE
Q 007620 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVL-F-DRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILL 383 (595)
Q Consensus 312 ~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l-~-~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~~~~~l~~ 383 (595)
. +.+ ....+...+..+|+..+ +...+ + ..++.. + .|.. ..+.+.||++.+++.- +. ....+|+
T Consensus 200 V-~sd-yEt~gEsywit~D~~s~--~yerve~P~kd~~s-y-~p~~I~~~~Y~Pdd~L~iiak-rd--G~s~lF~ 265 (313)
T d2hu7a1 200 V-TAG-LETAREARLVTVDPRDG--SVEDLELPSKDFSS-Y-RPTAITWLGYLPDGRLAVVAR-RE--GRSAVFI 265 (313)
T ss_dssp E-EEE-EEESSCEEEEEECTTTC--CEEECCCSSCHHHH-H-CCSEEEEEEECTTSCEEEEEE-ET--TEEEEEE
T ss_pred e-eec-cCCCCceEEEEEecccC--ceeeeecCccccee-e-cceEEEeeeeCCCCcEEEEEe-cC--Cchheee
Confidence 5 322 12224455667898874 33333 1 222211 0 0111 0134689998654443 22 2456664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.68 E-value=1.6e-06 Score=85.43 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=42.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||+.||+... ...|.++++++++..++..... ....+..+.|+|++++|+..
T Consensus 9 pIt~~~~s~dg~~la~~~~----------~~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~ 69 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTC 69 (371)
T ss_dssp CCCEEEECTTSSEEEEECS----------SSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEE
Confidence 4778999999999987642 2457777887776554432211 01257799999999987764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.67 E-value=5.1e-06 Score=79.90 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=57.7
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
..|.+.|++ +++...-..++.+.......|||||++|+.... ....|.++|+.+++...........
T Consensus 18 ~~v~v~D~~----t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---------~~~~v~~~d~~t~~~~~~~~~~~~~ 84 (346)
T d1jmxb_ 18 NNLHVVDVA----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------HYGDIYGIDLDTCKNTFHANLSSVP 84 (346)
T ss_dssp TEEEEEETT----TTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---------TTTEEEEEETTTTEEEEEEESCCST
T ss_pred CEEEEEECC----CCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---------CCCcEEEEeCccCeeeeeecccccc
Confidence 468899998 676654333455545778999999998765442 3467999999998755432222110
Q ss_pred --ccccccceEEecCCcEEEEE
Q 007620 85 --LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 --~~~~~~~~~Wspdg~~l~~~ 104 (595)
.......+.++|||+.|++.
T Consensus 85 ~~~~~~~~~v~~s~DG~~l~v~ 106 (346)
T d1jmxb_ 85 GEVGRSMYSFAISPDGKEVYAT 106 (346)
T ss_dssp TEEEECSSCEEECTTSSEEEEE
T ss_pred cccCCceEEEEEecCCCEEEEE
Confidence 01123478999999998775
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.67 E-value=2.4e-08 Score=93.79 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCc---ccCCCC-chhHHHhccCe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE---FSGMTP-TSSLIFLARRF 556 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~---~~~~~~-~~~q~la~~GY 556 (595)
..|.+.|+..||.+|.|+|++|++|+++||| |+||++|++ |.. ...+.. +..+++|.+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk~--P~iv~~HGG--------------p~~~~~~~~~~~~~~~~~~a~~g~ 65 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFDKSKKY--PLLLDVYAG--------------PCSQKADTVFRLNWATYLASTENI 65 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCCTTSCE--EEEEECCCC--------------TTCCCCCCCCCCSHHHHHHHTTCC
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcCCCCCe--eEEEEEcCC--------------CCcccCCCccCcCHHHHHHhcCCc
Confidence 4688999999999999999999999998877 999997643 221 111111 23457889999
Q ss_pred EEEe
Q 007620 557 AVLA 560 (595)
Q Consensus 557 ~Vl~ 560 (595)
+|+.
T Consensus 66 ~V~~ 69 (258)
T d2bgra2 66 IVAS 69 (258)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9998
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.55 E-value=6.4e-05 Score=75.34 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=46.6
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
...++||||++|||..+.+. .....|+++|+++|+....+- .. ...+.+.|++|++.|+|+..
T Consensus 128 ~~~~~Spd~~~la~s~d~~G-----~e~~~l~v~Dl~tg~~~~~~i-~~----~~~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASG-----SDWVTIKFMKVDGAKELPDVL-ER----VKFSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp EEEEECTTSSEEEEEEEETT-----CSCEEEEEEETTTTEEEEEEE-EE----ECSCCEEECTTSSEEEEEEC
T ss_pred cceEecCCCCEEEEEecccc-----CchheeEEeccCcceeccccc-cc----ccccceEEcCCCCEEEEEEe
Confidence 35689999999999887642 346889999999998543221 11 12367899999999998753
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.1e-08 Score=94.22 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
.||.+|+|||++|++++++||+ |+||++|+++.. . .+...|. ..+..++||++||+||.
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~--Pviv~~HGGp~~-----~---~~~~~~~--~~~~~~~la~~G~~vv~ 68 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHY--PLLLVVDGTPGS-----Q---SVAEKFE--VSWETVMVSSHGAVVVK 68 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCE--EEEEECCCCTTC-----C---CCCCCCC--CSHHHHHHHTTCCEEEC
T ss_pred eCCeEEEEEEEECCCcCCCCce--eEEEEEcCCccc-----c---CcCCCcC--cchHHHHHhcCCcEEEE
Confidence 5999999999999999998877 999997643110 0 0011111 12346789999999998
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.50 E-value=2.9e-06 Score=85.60 Aligned_cols=206 Identities=7% Similarity=-0.066 Sum_probs=112.0
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
...+....|...+.++..+ ....|.++|+++++......... .+..+.|||||++|+....+
T Consensus 21 ~~~~~~~~~~~~~~~v~~~--------d~g~v~v~D~~t~~v~~~~~~g~-----~~~~v~fSpDG~~l~~~s~d----- 82 (432)
T d1qksa2 21 PTQQMNDWDLENLFSVTLR--------DAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGRD----- 82 (432)
T ss_dssp CSSCCSCCCGGGEEEEEET--------TTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEETT-----
T ss_pred CCceeecCCCCcEEEEEEc--------CCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEcCC-----
Confidence 4455566777777777664 34778999999998655543322 35688999999999775211
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCe---eecCCCC----eeeeeEECC
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTPA----VYTAVEPSP 184 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~---~~lt~~~----~~~~~~~Sp 184 (595)
..+.++|+ +++. ..|.... ....+.|||
T Consensus 83 --------------------------------------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp 118 (432)
T d1qksa2 83 --------------------------------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW 118 (432)
T ss_dssp --------------------------------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC
T ss_pred --------------------------------------------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC
Confidence 13445555 3332 1222111 233567899
Q ss_pred CCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCC--CCceeecCCCeeEEEEEe
Q 007620 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM--RSISWRADKPSTLYWVEA 262 (595)
Q Consensus 185 Dg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~wspdg~~~l~~~~~ 262 (595)
||++|+++.... ..+.+||.++++............... ...... ..+..+|||+. +++.
T Consensus 119 DG~~l~vs~~~~------------~~v~i~d~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~s~dg~~-~~vs-- 180 (432)
T d1qksa2 119 EDKYAIAGAYWP------------PQYVIMDGETLEPKKIQSTRGMTYDEQ---EYHPEPRVAAILASHYRPE-FIVN-- 180 (432)
T ss_dssp TTTEEEEEEEET------------TEEEEEETTTCCEEEEEECCEECTTTC---CEESCCCEEEEEECSSSSE-EEEE--
T ss_pred CCCEEEEEcCCC------------CeEEEEeCccccceeeeccCCccccce---eccCCCceeEEEECCCCCE-EEEE--
Confidence 999998876432 378899988776544322210000000 000001 12344666653 2211
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceecc--ccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
....+.+.+++. ...+...+. ........+.++|||+.++.... ....+..+|.++
T Consensus 181 ---------~~~~~~i~~~d~---~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~---~~~~v~v~d~~~ 238 (432)
T d1qksa2 181 ---------VKETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKE 238 (432)
T ss_dssp ---------ETTTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTT
T ss_pred ---------EccCCeEEEEEc---cCCCcceEEEEcccCccccceECCCCCEEEEecc---ccceEEEeeccc
Confidence 122345666664 322322222 22233457889999997655432 223677788776
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=0.00013 Score=69.27 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=75.2
Q ss_pred ceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccc
Q 007620 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (595)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (595)
..+|.++|+++++.......... ......+.+||||++|+.....
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~~--------------------------------- 54 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNK--------------------------------- 54 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETT---------------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCC--CCCccEEEECCCCCEEEEEECC---------------------------------
Confidence 37889999999885543322211 1134689999999988765210
Q ss_pred cccCcCCccceEEeecceEEEEcC-CCCee-ec--CCCC----eeeeeEECCCCCeEEEEEcccCccccccCcccceeEE
Q 007620 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DF--GTPA----VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~-~l--t~~~----~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~ 212 (595)
...|+++|+ +|+.. .+ .... ....+++||||+++++....... ...........+.
T Consensus 55 ---------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~-~~~~~~~~~~~~~ 118 (337)
T d1pbyb_ 55 ---------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL-ELTHFEVQPTRVA 118 (337)
T ss_dssp ---------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE-CSSCEEECCCEEE
T ss_pred ---------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcc-eeeecccccccee
Confidence 134666777 55432 22 1111 12378999999999887643211 0000001234678
Q ss_pred EEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 213 ~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
++|..+++........ .....+.++|||+.
T Consensus 119 ~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 119 LYDAETLSRRKAFEAP-------------RQITMLAWARDGSK 148 (337)
T ss_dssp EEETTTTEEEEEEECC-------------SSCCCEEECTTSSC
T ss_pred eccccCCeEEEecccc-------------CCceEEEEcCCCCE
Confidence 8898876654432211 12346788999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=1.7e-05 Score=77.82 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=51.2
Q ss_pred eeEEEecCCCCCCCCceeeecCCC-CCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (595)
.|.|+|+. +++..++..+.+ ...+....|||||++|+-.+. ++ .|.++++.+++.........
T Consensus 30 ~i~iw~~~----~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~--------D~--~i~vWd~~~~~~~~~~~~~~-- 93 (371)
T d1k8kc_ 30 EVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------DR--NAYVWTLKGRTWKPTLVILR-- 93 (371)
T ss_dssp EEEEEEEE----TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------TS--CEEEEEEETTEEEEEEECCC--
T ss_pred EEEEEECC----CCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC--------CC--eEEEEeeccccccccccccc--
Confidence 47888987 665444443322 235889999999998875542 33 45555666665433321111
Q ss_pred ccccccceEEecCCcEEEEE
Q 007620 85 LNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 85 ~~~~~~~~~Wspdg~~l~~~ 104 (595)
....+..+.|+||++.|+..
T Consensus 94 ~~~~v~~i~~~p~~~~l~~~ 113 (371)
T d1k8kc_ 94 INRAARCVRWAPNEKKFAVG 113 (371)
T ss_dssp CSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccceee
Confidence 01246789999999988775
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.38 E-value=2.1e-07 Score=87.92 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=48.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC--CchhHHHhccCeEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARRFAV 558 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~--~~~~q~la~~GY~V 558 (595)
++|.|+|+++||.+|+|+|++|+++++++++ |+||++| |||+...... ....++++..||++
T Consensus 6 ~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~--P~iv~~H--------------GG~~~~~~~~~~~~~~~~~~~~~~~~ 69 (280)
T d1qfma2 6 QTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH--PAFLYGY--------------GGFNISITPNYSVSRLIFVRHMGGVL 69 (280)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCCCSSCS--CEEEECC--------------CCTTCCCCCCCCHHHHHHHHHHCCEE
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCCCCCCCe--EEEEEEC--------------CCCcccCCCCcchhhhhhhcccceee
Confidence 5788999999999999999999999988766 9999976 4444222221 22345777778888
Q ss_pred Ee
Q 007620 559 LA 560 (595)
Q Consensus 559 l~ 560 (595)
+.
T Consensus 70 ~~ 71 (280)
T d1qfma2 70 AV 71 (280)
T ss_dssp EE
T ss_pred ec
Confidence 76
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=0.00011 Score=68.66 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=132.6
Q ss_pred ceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007620 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (595)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~ 100 (595)
...|.++.. .+...+|||||+.||-.+. + ..|.++|+.+++......... ..+..+.|+|++..
T Consensus 10 ~~~L~GH~~--~I~~l~~sp~~~~l~s~s~--------D--g~i~iWd~~~~~~~~~~~~h~----~~V~~~~~~~~~~~ 73 (317)
T d1vyhc1 10 KYALSGHRS--PVTRVIFHPVFSVMVSASE--------D--ATIKVWDYETGDFERTLKGHT----DSVQDISFDHSGKL 73 (317)
T ss_dssp SCEEECCSS--CEEEEEECSSSSEEEEEES--------S--SCEEEEETTTCCCCEEECCCS----SCEEEEEECTTSSE
T ss_pred cEEEcCCCC--CeEEEEEcCCCCEEEEEeC--------C--CeEEEEECCCCCEEEEEeCCC----CcEEEEeeeccccc
Confidence 345664433 5889999999998765432 2 345666888887544332211 14678999999998
Q ss_pred EEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccce-EEeecceEEEEcC-CCCe-eecC-CCCe
Q 007620 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF-DYYTTAQLVLGSL-DGTA-KDFG-TPAV 176 (595)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~d~-~g~~-~~lt-~~~~ 176 (595)
++........... ............ +.. .. ... .....+...+ .......+.++++ +++. ..+. ....
T Consensus 74 ~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~--~~-~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 145 (317)
T d1vyhc1 74 LASCSADMTIKLW---DFQGFECIRTMH-GHD--HN-VSS-VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 145 (317)
T ss_dssp EEEEETTSCCCEE---ETTSSCEEECCC-CCS--SC-EEE-EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ccccccccccccc---cccccccccccc-ccc--cc-cee-eeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc
Confidence 8876432211100 000000000000 000 00 000 0000111111 1112345666777 4533 3332 2334
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceE-EEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
...+.|+||++.|+....+ ..+.+++...+.. ..+...... ...+.|+|++..
T Consensus 146 ~~~~~~~~~~~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~ 199 (317)
T d1vyhc1 146 VRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREHRHV-------------VECISWAPESSY 199 (317)
T ss_dssp EEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCCSSC-------------EEEEEECCSCGG
T ss_pred ceeeecccCCCEEEEEeCC-------------CeEEEEeeccceeeEEEecCCCC-------------ceEEEEeecccc
Confidence 5678999999988776532 2577777764433 222211100 001122222110
Q ss_pred ------------------eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCc-eeccccCccccceeecCCCcEEEEE
Q 007620 256 ------------------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNE 316 (595)
Q Consensus 256 ------------------~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~l~~~~~~~~~~~wspDg~~l~~~ 316 (595)
.+... . .....+.+++. ..++. ..+......+..+.|+|++..|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~-~----------~~d~~i~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 265 (317)
T d1vyhc1 200 SSISEATGSETKKSGKPGPFLLS-G----------SRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265 (317)
T ss_dssp GGGGGCCSCC-------CCEEEE-E----------ETTSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeccccceeeeeccCCceeEe-c----------cCCCEEEEEEC---CCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 01111 0 11234555564 22232 2233334456778999999887765
Q ss_pred EeecccceEEEEEeCCCCCCCcEEEee--cccccccCCCCCCCeeeCCCCCEEEEEe
Q 007620 317 TWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (595)
Q Consensus 317 ~~~~~~~~~L~~~d~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 371 (595)
. .++ .|.++|+.+++ ....+.. ..+.. +.|+++|+.|+...
T Consensus 266 ~--~dg--~i~iwd~~~~~-~~~~~~~h~~~V~~---------~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 266 A--DDK--TLRVWDYKNKR-CMKTLNAHEHFVTS---------LDFHKTAPYVVTGS 308 (317)
T ss_dssp E--TTT--EEEEECCTTSC-CCEEEECCSSCEEE---------EEECSSSSCEEEEE
T ss_pred E--CCC--eEEEEECCCCc-EEEEEcCCCCCEEE---------EEEcCCCCEEEEEe
Confidence 3 223 57778887742 2233322 22333 78999999776543
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.37 E-value=2.6e-07 Score=86.53 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=48.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~la~~GY~Vl 559 (595)
..+.|+|++.||.+|+|+|++|.+-+ .|.|+||++|+ ||+...... ....++||++||+|+
T Consensus 11 ~~~~v~~~s~dG~~i~~~l~~p~~~~----~~~Pviv~~HG--------------G~~~~~~~~~~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 11 GSRLVWVESFDGSRVPTYVLESGRAP----TPGPTVVLVHG--------------GPFAEDSDSWDTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTSC----SSEEEEEEECS--------------SSSCCCCSSCCHHHHHHHHHTCEEE
T ss_pred ceEEEEEECCCCCEEEEEEEeCCCCC----CCceEEEEECC--------------CCccCCCccccHHHHHHHhhccccc
Confidence 78999999999999999999997632 25599999764 333211111 234689999999999
Q ss_pred eCCCC
Q 007620 560 AGPSI 564 (595)
Q Consensus 560 ~~~~~ 564 (595)
. ++.
T Consensus 73 ~-~d~ 76 (260)
T d2hu7a2 73 M-PNY 76 (260)
T ss_dssp E-ECC
T ss_pred c-cee
Confidence 9 443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=7.4e-05 Score=71.10 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=70.4
Q ss_pred ceEEEEcC-CCCe-eecCC-CCeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccC
Q 007620 157 AQLVLGSL-DGTA-KDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 157 ~~l~~~d~-~g~~-~~lt~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~ 233 (595)
..+.++|+ +++. ..+.. ...+..++|+|||+.|+....+ ..+.+|++..............
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-------------~~i~~~~~~~~~~~~~~~~~~~--- 269 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-------------ATCRLFDLRADQELMTYSHDNI--- 269 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCTTC---
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-------------CeEEEEeecccccccccccccc---
Confidence 45666677 4533 23332 2345688999999988877542 3678888876554332211100
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeecCCCcE
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA 312 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~wspDg~~ 312 (595)
......+.|+|+++. |+.. . ....+.++|+ ..++.. .+......+..+.|+||+..
T Consensus 270 -------~~~i~~~~~s~~~~~-l~~g--~----------~dg~i~iwd~---~~~~~~~~~~~H~~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 270 -------ICGITSVSFSKSGRL-LLAG--Y----------DDFNCNVWDA---LKADRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp -------CSCEEEEEECSSSCE-EEEE--E----------TTSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred -------cCceEEEEECCCCCE-EEEE--E----------CCCEEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 011235788999873 3221 1 1235677786 323333 34334556788999999988
Q ss_pred EEEEE
Q 007620 313 LVNET 317 (595)
Q Consensus 313 l~~~~ 317 (595)
|+...
T Consensus 327 l~s~s 331 (340)
T d1tbga_ 327 VATGS 331 (340)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.33 E-value=3.6e-05 Score=72.42 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=64.5
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeE
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (595)
..++|+||++.|+....+ ..+.+||+.+++...+..... ......+.|+|+++. |
T Consensus 140 ~~~~~s~~~~~l~~g~~d-------------g~i~~~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~-l 194 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQD-------------SKVHVYKLSGASVSEVKTIVH-----------PAEITSVAFSNNGAF-L 194 (299)
T ss_dssp EEEEECTTSCEEEEEETT-------------SEEEEEEEETTEEEEEEEEEC-----------SSCEEEEEECTTSSE-E
T ss_pred cccccccccccccccccc-------------ccccccccccccccccccccc-----------ccccccccccccccc-c
Confidence 467899999988876532 368899988766544321100 011235788999873 3
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCce-e---ccccCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-I---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+.. .....+.+++. ..+... . +......+..+.|+|++..|+... .++ .|.++|+.+
T Consensus 195 ~~~------------~~d~~i~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs--~dg--~i~iwd~~~ 255 (299)
T d1nr0a2 195 VAT------------DQSRKVIPYSV---ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS--LDN--SVIVWNMNK 255 (299)
T ss_dssp EEE------------ETTSCEEEEEG---GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE--TTS--CEEEEETTC
T ss_pred ccc------------ccccccccccc---cccccccccccccccccccccccccccccceEEEc--CCC--EEEEEECCC
Confidence 221 11234556564 212211 1 112233466789999999887654 223 466667776
Q ss_pred C
Q 007620 334 K 334 (595)
Q Consensus 334 ~ 334 (595)
+
T Consensus 256 ~ 256 (299)
T d1nr0a2 256 P 256 (299)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=0.00036 Score=67.86 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=38.1
Q ss_pred CcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc--------------cccccccceEEec
Q 007620 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--------------CLNAVFGSFVWVN 96 (595)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~--------------~~~~~~~~~~Wsp 96 (595)
..+...+|||||++||-.+ ++ .|.++++.+++.......... .....+..+.|+|
T Consensus 63 ~~V~~l~fs~dg~~lasg~---------d~--~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 131 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC---------NK--TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC---------BS--CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEe---------CC--eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence 3588999999999876532 23 355668877764322111100 0011245789999
Q ss_pred CCcEEEEE
Q 007620 97 NSTLLIFT 104 (595)
Q Consensus 97 dg~~l~~~ 104 (595)
||+.|+..
T Consensus 132 ~~~~l~s~ 139 (388)
T d1erja_ 132 DGKFLATG 139 (388)
T ss_dssp TSSEEEEE
T ss_pred CCCcceec
Confidence 99988765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.18 E-value=0.0013 Score=63.94 Aligned_cols=84 Identities=11% Similarity=-0.003 Sum_probs=49.3
Q ss_pred eeEEEecCCCCCCCCceee--ecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc
Q 007620 6 GIGIHRLLPDDSLGPEKEV--HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l--t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (595)
+||+..+.. .+++...+ +..+.....+...+||||+.|+.. . .+....|.++.+++.....+....
T Consensus 15 ~i~~~~fd~--~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~--------~~~~~~~~i~~~~~~~~~~~~~~~- 82 (365)
T d1jofa_ 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-A--------MKKWSSFAVKSPTEIVHEASHPIG- 82 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-E--------BTEEEEEEEEETTEEEEEEEEECC-
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-e--------CCcEEEEEEeCCCCeEEEeeecCC-
Confidence 688887753 34443222 223444345678999999987554 3 235677878866554433322111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007620 84 CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 84 ~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.....+..++|++.+++.
T Consensus 83 ---~~p~~v~~~~~~~~~~v~ 100 (365)
T d1jofa_ 83 ---GHPRANDADTNTRAIFLL 100 (365)
T ss_dssp ---SSGGGGCTTSCCEEEEEE
T ss_pred ---CCcEEEEECCCCCEEEEE
Confidence 133467788999977664
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.97 E-value=0.0028 Score=59.51 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=47.7
Q ss_pred CceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007620 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~ 99 (595)
..+.++.++......++.++|||+ |+++ .. ...+||.++.+ |+.+.+..... ....+.|++||+
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt-~~--------~~~~I~~i~p~-g~~~~~~~~~~-----~~~gla~~~dG~ 80 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVT-NH--------EVGEIVSITPD-GNQQIHATVEG-----KVSGLAFTSNGD 80 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEE-ET--------TTTEEEEECTT-CCEEEEEECSS-----EEEEEEECTTSC
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEE-eC--------CCCEEEEEeCC-CCEEEEEcCCC-----CcceEEEcCCCC
Confidence 456778788776777899999997 5444 32 35789999976 45555544443 456889999999
Q ss_pred EEEE
Q 007620 100 LLIF 103 (595)
Q Consensus 100 ~l~~ 103 (595)
.++.
T Consensus 81 l~v~ 84 (302)
T d2p4oa1 81 LVAT 84 (302)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.96 E-value=0.0023 Score=60.51 Aligned_cols=246 Identities=12% Similarity=0.089 Sum_probs=122.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
....|+|.|||+ |+|+........ ....+|+.+++++++...+..............+.+.+||.+|++...
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~--~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~----- 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNG--KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETT--EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----
T ss_pred CCeEeEEeCCCC-EEEEECcccccc--ccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-----
Confidence 356799999997 566543210000 113579999999887655532211111111236788999987766410
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecC----CCC---eeeeeEECC
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG----TPA---VYTAVEPSP 184 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt----~~~---~~~~~~~Sp 184 (595)
...|.+++.+|....+. ... ...++.+.|
T Consensus 91 --------------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~ 126 (314)
T d1pjxa_ 91 --------------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY 126 (314)
T ss_dssp --------------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred --------------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC
Confidence 12355566655433321 111 124678899
Q ss_pred CCCeEEEEEcccCc---cccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe---eEE
Q 007620 185 DQKYVLITSMHRPY---SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS---TLY 258 (595)
Q Consensus 185 Dg~~l~~~~~~~~~---~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~---~l~ 258 (595)
||+ |+|+...... ............+|.++.++.....+.... .+..+.|+|++.. .||
T Consensus 127 ~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~--------------~pNGi~~~~d~d~~~~~ly 191 (314)
T d1pjxa_ 127 EGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ--------------FPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES--------------SEEEEEEEECTTSCEEEEE
T ss_pred CCC-EEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcc--------------eeeeeEECCCCCcceeEEE
Confidence 985 5665322110 000001112347888888776554443221 1124678777542 243
Q ss_pred EEEeecCCCcccccCCcceEEeccCCCCCCCCce--e-ccccC----ccccceeecCCCcEEEEEEeecccceEEEEEeC
Q 007620 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--I-LHKLD----LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (595)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~--~-l~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~ 331 (595)
.. +. ....++.+++ ...+... . +.... .....+.+..+|..++... +..+|+++|+
T Consensus 192 v~---d~--------~~~~i~~~d~--~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~----~~g~I~~~dp 254 (314)
T d1pjxa_ 192 VA---ET--------PTKKLWSYDI--KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW----GSSHIEVFGP 254 (314)
T ss_dssp EE---ET--------TTTEEEEEEE--EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE----TTTEEEEECT
T ss_pred EE---ee--------cccceEEeec--cCccccceeeEEEEccccccccceeeEEecCCcEEEEEc----CCCEEEEEeC
Confidence 33 11 1234444443 0112221 1 11111 1123456667777555542 2348999999
Q ss_pred CCCCCCcEE-Ee-e-cccccccCCCCCCCeeeCCCCCEEEEEee
Q 007620 332 GSKDVAPRV-LF-D-RVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (595)
Q Consensus 332 ~~~~~~~~~-l~-~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 372 (595)
+++ .... +. . ....+ +++.+|++.||++..
T Consensus 255 ~~g--~~~~~i~~p~~~~t~---------~afg~d~~~lyVt~~ 287 (314)
T d1pjxa_ 255 DGG--QPKMRIRCPFEKPSN---------LHFKPQTKTIFVTEH 287 (314)
T ss_dssp TCB--SCSEEEECSSSCEEE---------EEECTTSSEEEEEET
T ss_pred CCC--EEEEEEECCCCCEEE---------EEEeCCCCEEEEEEC
Confidence 874 3332 21 1 12222 788899998888764
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=3.4e-06 Score=81.16 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=50.2
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
++.+.|+|++.||.+|+|+|++|.+..+ |+|+||++|+. +... ..+...+.||++||+|+
T Consensus 53 ~~~~~v~~~s~dG~~l~~~l~~P~~~~~----~~P~Vv~~hG~--------------~~~~--~~~~~~~~~a~~G~~v~ 112 (322)
T d1vlqa_ 53 VEAYDVTFSGYRGQRIKGWLLVPKLEEE----KLPCVVQYIGY--------------NGGR--GFPHDWLFWPSMGYICF 112 (322)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEECCSCS----SEEEEEECCCT--------------TCCC--CCGGGGCHHHHTTCEEE
T ss_pred eEEEEEEEECCCCcEEEEEEEeccCCCC----CccEEEEecCC--------------CCCc--CcHHHHHHHHhCCCEEE
Confidence 4678899999999999999999987442 45999997642 2111 12234568999999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++....|.
T Consensus 113 ~-~D~rG~G~ 121 (322)
T d1vlqa_ 113 V-MDTRGQGS 121 (322)
T ss_dssp E-ECCTTCCC
T ss_pred E-eeccccCC
Confidence 9 66655443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=0.0018 Score=62.62 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=39.9
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+...+|||||++|+.... ...|.+++...++......... ..+..+.|++++..++..
T Consensus 123 ~V~~l~~s~~~~~l~s~~~----------dg~v~i~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~ 181 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGAE----------DRLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSG 181 (388)
T ss_dssp BEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEE
T ss_pred CEEEEEECCCCCcceeccc----------cccccccccccccccccccccc----cccccccccccccccccc
Confidence 3667899999998876542 2456777888776554433211 145688999999887765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=0.0037 Score=59.09 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=62.2
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEE-EeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
....++|+|++..++++...+ ..+.+||....+.. .+...... ......+.|+||+.
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~d------------~~v~~~d~~~~~~~~~~~~~~~~----------~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHHKQ----------GSFVRDVEFSPDSG 218 (325)
T ss_dssp CEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSSCT----------TCCEEEEEECSTTC
T ss_pred ccccccccccccceEEEeecc------------cccccccccccccceecccccCC----------CCccEEeeeccccc
Confidence 456789999998877665432 25778887654432 22221110 01123578899865
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-eccccCccccceeec---CCCcEEEEEEeecccceEEEEEe
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWC---DDSLALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~~~~~~~~~~~ws---pDg~~l~~~~~~~~~~~~L~~~d 330 (595)
..++-. . ....+.++|. ..++.. .+...........|+ +||..|+... .++ .|.++|
T Consensus 219 ~~l~s~-~-----------~d~~i~iwd~---~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s--~D~--~i~iwd 279 (325)
T d1pgua1 219 EFVITV-G-----------SDRKISCFDG---KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG--ADA--TIRVWD 279 (325)
T ss_dssp CEEEEE-E-----------TTCCEEEEET---TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE--TTS--EEEEEE
T ss_pred eecccc-c-----------cccceeeeee---ccccccccccccccccccceeeeeccCCCEEEEEe--CCC--eEEEEE
Confidence 323221 1 1234666675 223332 333223334445555 6888776654 223 466668
Q ss_pred CCCC
Q 007620 331 PGSK 334 (595)
Q Consensus 331 ~~~~ 334 (595)
+.++
T Consensus 280 ~~~~ 283 (325)
T d1pgua1 280 VTTS 283 (325)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=0.0058 Score=57.72 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=59.7
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCc-eEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
+..+.|+|||++|+....... ..+.+++.+++ ....+.... .......|+|++..
T Consensus 118 v~~v~~s~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGRD-----------NFGVFISWDSGNSLGEVSGHS-------------QRINACHLKQSRPM 173 (325)
T ss_dssp EEEEEECTTSSEEEEEECCSS-----------CSEEEEETTTCCEEEECCSCS-------------SCEEEEEECSSSSC
T ss_pred EEEEEECCCCCccceeecccc-----------ceEEEEeecccccceeeeecc-------------cccccccccccccc
Confidence 457899999999988865322 23556666543 333432211 11234778888774
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCce-ecc---ccCccccceeecCCC-cEEEEEEeecccceEEEEEe
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH---KLDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVC 330 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~-~l~---~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~L~~~d 330 (595)
.++.. . ....+.+++. ...+.. .+. .....+..+.|+||+ ..++... .++ .|.++|
T Consensus 174 ~~~~~--~----------~d~~v~~~d~---~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~--~i~iwd 234 (325)
T d1pgua1 174 RSMTV--G----------DDGSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDR--KISCFD 234 (325)
T ss_dssp EEEEE--E----------TTTEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTC--CEEEEE
T ss_pred eEEEe--e----------cccccccccc---cccccceecccccCCCCccEEeeeccccceeccccc--ccc--ceeeee
Confidence 23221 1 1234455554 111111 111 112335678999985 5555442 223 466668
Q ss_pred CCCC
Q 007620 331 PGSK 334 (595)
Q Consensus 331 ~~~~ 334 (595)
+.++
T Consensus 235 ~~~~ 238 (325)
T d1pgua1 235 GKSG 238 (325)
T ss_dssp TTTC
T ss_pred eccc
Confidence 7763
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=97.82 E-value=5.9e-06 Score=79.04 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=50.1
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+..+.|+|++.||.+|+|+|++|.+- .|.|+||++|+. ..... ......+.||++||+|+
T Consensus 54 ~~~~~v~~~~~dg~~i~~~l~~P~~~-----~~~P~vv~~HG~--------------~~~~~-~~~~~~~~la~~Gy~vi 113 (318)
T d1l7aa_ 54 VKVYRLTYKSFGNARITGWYAVPDKE-----GPHPAIVKYHGY--------------NASYD-GEIHEMVNWALHGYATF 113 (318)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEESSC-----SCEEEEEEECCT--------------TCCSG-GGHHHHHHHHHTTCEEE
T ss_pred eEEEEEEEECCCCcEEEEEEEecCCC-----CCceEEEEecCC--------------CCCcc-chHHHHHHHHHCCCEEE
Confidence 47889999999999999999999862 255999998742 11111 11233578999999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++.+..|.
T Consensus 114 ~-~D~rG~G~ 122 (318)
T d1l7aa_ 114 G-MLVRGQQR 122 (318)
T ss_dssp E-ECCTTTSS
T ss_pred E-EeeCCCCC
Confidence 9 66665554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.67 E-value=0.019 Score=53.98 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=38.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
...|.|.+||+ |+|+- . ....|+.+++++++...+...... ....+.+++||++++.
T Consensus 42 lEG~~~D~~G~-Ly~~D-~--------~~g~I~ri~p~g~~~~~~~~~~~~----~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLD-V--------FEGNIFKINPETKEIKRPFVSHKA----NPAAIKIHKDGRLFVC 98 (319)
T ss_dssp EEEEEECTTSC-EEEEE-T--------TTCEEEEECTTTCCEEEEEECSSS----SEEEEEECTTSCEEEE
T ss_pred cEeCEECCCCC-EEEEE-C--------CCCEEEEEECCCCeEEEEEeCCCC----CeeEEEECCCCCEEEE
Confidence 45799999997 76653 2 346899999988765544322211 3457899999986544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.55 E-value=0.011 Score=54.92 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=39.5
Q ss_pred cceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
..|.|++....|+|+-- ....|+.+++++++.+.+ ..+. ..+.+.+.+||++++-
T Consensus 21 Egp~wd~~~~~l~wvDi---------~~~~I~r~d~~~g~~~~~-~~~~-----~~~~i~~~~dg~l~va 75 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI---------LERELHELHLASGRKTVH-ALPF-----MGSALAKISDSKQLIA 75 (295)
T ss_dssp EEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEEEE-ECSS-----CEEEEEEEETTEEEEE
T ss_pred eCCeEECCCCEEEEEEC---------CCCEEEEEECCCCeEEEE-ECCC-----CcEEEEEecCCCEEEE
Confidence 46999998888988732 247899999999876544 2233 3567788888876544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.53 E-value=0.0056 Score=57.75 Aligned_cols=217 Identities=8% Similarity=0.116 Sum_probs=112.1
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcc-ccccccceEEecCCcEEEEEecCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
.....++|||++|+. .. ....|.+++.+++....+....+.. ++ ....+...++|. |+|+-......
T Consensus 73 P~Gl~~~~dg~~l~v-ad---------~~~~i~~~~~~g~~~~~~~~~~~g~~~~-~pndl~~d~~G~-lyvtd~~~~~~ 140 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFV-AD---------MRLGLLVVQTDGTFEEIAKKDSEGRRMQ-GCNDCAFDYEGN-LWITAPAGEVA 140 (314)
T ss_dssp EEEEEECSSSSEEEE-EE---------TTTEEEEEETTSCEEECCSBCTTSCBCB-CCCEEEECTTSC-EEEEECBCBCT
T ss_pred ceeEEEeCCCCEEEE-EE---------CCCeEEEEeCCCcEEEEEeccccccccC-CCcEEEECCCCC-EEEecCccCcc
Confidence 345789999987654 32 2356889998876655443332211 11 124578889996 56652211000
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCCeeecCCC-CeeeeeEECCCCC---
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQK--- 187 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~lt~~-~~~~~~~~SpDg~--- 187 (595)
. .. . ... .. .....||+++.+|+...+... ..-..++|+||++
T Consensus 141 ~--------------~~-~-----------~~~-~~------~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~ 187 (314)
T d1pjxa_ 141 P--------------AD-Y-----------TRS-MQ------EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp T--------------SC-C-----------CBT-TS------SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCE
T ss_pred c--------------cc-c-----------cce-ec------cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcce
Confidence 0 00 0 000 00 024678899888876554322 1224678988865
Q ss_pred -eEEEEEcccCccccccCcccceeEEEEcCC-CceE---EEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEe
Q 007620 188 -YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV---RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (595)
Q Consensus 188 -~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (595)
+|+++... ..+|+.+++. .+.. +.+...+.... ..+..+..-.+|. ||....
T Consensus 188 ~~lyv~d~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---------~~pdGiavD~~Gn--lyVa~~ 244 (314)
T d1pjxa_ 188 YQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTHE---------GGADGMDFDEDNN--LLVANW 244 (314)
T ss_dssp EEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCSS---------CEEEEEEEBTTCC--EEEEEE
T ss_pred eEEEEEeec------------ccceEEeeccCccccceeeEEEEcccccc---------ccceeeEEecCCc--EEEEEc
Confidence 55555322 3478888765 3322 22222221100 0112344555554 544321
Q ss_pred ecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCC
Q 007620 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (595)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~ 334 (595)
..+.+++++. ++++.......+ ....+++|.||++.|+.... ...+||++++...
T Consensus 245 -----------~~g~I~~~dp---~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~---~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 245 -----------GSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH---ENNAVWKFEWQRN 300 (314)
T ss_dssp -----------TTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET---TTTEEEEEECSSC
T ss_pred -----------CCCEEEEEeC---CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC---CCCcEEEEECCCC
Confidence 1245777774 444544433332 34677899999876543321 2348999987653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=0.015 Score=53.12 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=40.4
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
......|+|+++.|+.... ...+.++++.+++......... ..+..+.|+++++.|+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASR----------DKTIKMWEVQTGYCVKTFTGHR----EWVRMVRPNQDGTLIASC 161 (317)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSEEEEE
T ss_pred cceeeeccCCCceEEeecc----------CcceeEeecccceeeeEEccCC----CcceeeecccCCCEEEEE
Confidence 4667899999999876542 2456677888877544332221 135678999999988765
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=0.0021 Score=60.38 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=74.3
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.|.+.|+. .++...... .....+...+|||||+.|+..+. ...|.++++...+......... .
T Consensus 207 ~v~i~d~~----~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~----------d~~i~~~~~~~~~~~~~~~~~~--~ 269 (340)
T d1tbga_ 207 SAKLWDVR----EGMCRQTFT-GHESDINAICFFPNGNAFATGSD----------DATCRLFDLRADQELMTYSHDN--I 269 (340)
T ss_dssp EEEEEETT----TTEEEEEEC-CCSSCEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCTT--C
T ss_pred eEEEEECC----CCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeeccccccccccccc--c
Confidence 36677876 454433221 12235778899999998876542 2456777887766544322211 1
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-
Q 007620 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (595)
Q Consensus 86 ~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~- 164 (595)
...+..+.|+|+++.|+.... ...|.++|+
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~~-------------------------------------------------dg~i~iwd~~ 300 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGYD-------------------------------------------------DFNCNVWDAL 300 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEET-------------------------------------------------TSCEEEEETT
T ss_pred cCceEEEEECCCCCEEEEEEC-------------------------------------------------CCEEEEEECC
Confidence 124568899999998776421 123555566
Q ss_pred CCCe-eecC-CCCeeeeeEECCCCCeEEEEEc
Q 007620 165 DGTA-KDFG-TPAVYTAVEPSPDQKYVLITSM 194 (595)
Q Consensus 165 ~g~~-~~lt-~~~~~~~~~~SpDg~~l~~~~~ 194 (595)
+++. ..+. ....+..++|||||++|+..+.
T Consensus 301 ~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 4443 2333 2335678899999999876653
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=97.38 E-value=4.9e-05 Score=74.81 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=44.3
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
..+.|.++.+||.+|.+.|++|.+ .+++ |+||+.|| |. +.........+. .........++||++||+||.
T Consensus 23 ~~~~v~i~~rDG~~L~~~v~~P~~---~~~~--P~il~~~p--Yg-~~~~~~~~~~~~-~~~~~~~~~~~~a~~Gy~vv~ 93 (381)
T d1mpxa2 23 IKREVMIPMRDGVKLHTVIVLPKG---AKNA--PIVLTRTP--YD-ASGRTERLASPH-MKDLLSAGDDVFVEGGYIRVF 93 (381)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT---CCSE--EEEEEEES--SC-HHHHTCSSCCSS-HHHHSCGGGHHHHHTTCEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEeCC---CCCc--cEEEEEcc--CC-CCCccccccccc-ccccchhHHHHHHhCCCEEEE
Confidence 346689999999999999999976 2344 99998764 11 100000000110 011112335899999999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.28 E-value=0.00018 Score=71.12 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=40.3
Q ss_pred EccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 38 ~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+|||++| |+.. ...+.|.++|+++++..++...+.. .+...+.++|||+.+++.
T Consensus 79 gtpDGr~l-fV~d--------~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 79 GRYDGKYL-FIND--------KANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp TEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEE
T ss_pred ccCCCCEE-EEEc--------CCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEE
Confidence 47999886 5554 3467899999999988777554431 145578999999977664
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=97.22 E-value=4.5e-05 Score=69.48 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=43.4
Q ss_pred eEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeC
Q 007620 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (595)
Q Consensus 482 ~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~ 561 (595)
.|.|+|++.||.+|+++|+.|.+ +++ |+||++|.. .| .+.......+.||++||+|+.
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~----~~~--P~vl~~h~~-----------~G----~~~~~~~~a~~lA~~Gy~vl~- 60 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK----APA--PVIVIAQEI-----------FG----VNAFMRETVSWLVDQGYAAVC- 60 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS----SSE--EEEEEECCT-----------TB----SCHHHHHHHHHHHHTTCEEEE-
T ss_pred ceEEEEEcCCCCEEEEEEECCCC----CCc--eEEEEeCCC-----------CC----CCHHHHHHHHHHHhcCCccee-
Confidence 46689999999999999999964 234 999997631 11 111111235789999999999
Q ss_pred CCC
Q 007620 562 PSI 564 (595)
Q Consensus 562 ~~~ 564 (595)
|+.
T Consensus 61 pd~ 63 (233)
T d1dina_ 61 PDL 63 (233)
T ss_dssp ECG
T ss_pred eee
Confidence 654
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=6.9e-05 Score=69.51 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=48.1
Q ss_pred ceEEEEEECCCC-cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG-~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+.+.++|++.|| .++..+|++|.+++++|+| |+|++.|+ ++...........|+.+.+|++|+
T Consensus 12 ~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~y--Pvi~~lhG--------------~~~~~~~~~~~~~~~~~~~~~~vV 75 (265)
T d2gzsa1 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGY--PILYMLDG--------------NAVMDRLDDELLKQLSEKTPPVIV 75 (265)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCE--EEEEESSH--------------HHHHHHCCHHHHHHHTTSCCCEEE
T ss_pred eeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCc--eEEEEecC--------------cchhhhHHHHHHHHHHhcCCCeEE
Confidence 788999999998 5899999999999998877 99998653 322111111223578888999998
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 76 ~ 76 (265)
T d2gzsa1 76 A 76 (265)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=97.15 E-value=0.00016 Score=69.96 Aligned_cols=60 Identities=28% Similarity=0.448 Sum_probs=42.3
Q ss_pred EEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCC--cccCCCCchhHHHhccCeEEEe
Q 007620 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN--EFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 483 e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~--~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+-|.++-+||.+|.+.||+|.+ ++ |+|+||+.||- |+.. .+... ....++||++||+||.
T Consensus 6 ~~v~ipmrDGv~L~~~vy~P~~---~~--~~P~il~~~py------------g~~~~~~~~~~-~~~~~~~a~~GY~vv~ 67 (347)
T d1ju3a2 6 SNVMVPMRDGVRLAVDLYRPDA---DG--PVPVLLVRNPY------------DKFDVFAWSTQ-STNWLEFVRDGYAVVI 67 (347)
T ss_dssp EEEEEECTTSCEEEEEEEEECC---SS--CEEEEEEEESS------------CTTCCHHHHTT-SCCTHHHHHTTCEEEE
T ss_pred eCeEEECCCCCEEEEEEEEcCC---CC--CEEEEEEEcCC------------CCccccCcCcc-cHHHHHHHHCCCEEEE
Confidence 4578899999999999999975 23 55999998751 1111 11111 1235899999999998
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=97.15 E-value=0.00022 Score=69.40 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=49.4
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
+..+..++++.||.+|..++|+|.+-+ .++|+|||+|+|-| +.|++... ......+.+|++||+|+
T Consensus 77 v~~~~~~i~~~dg~~i~~~iy~P~~~~----~~~Pviv~~HGGG~--------~~gs~~~~--~~~~~~~~la~~g~~Vv 142 (358)
T d1jkma_ 77 VETSTETILGVDGNEITLHVFRPAGVE----GVLPGLVYTHGGGM--------TILTTDNR--VHRRWCTDLAAAGSVVV 142 (358)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCC----SCEEEEEEECCSTT--------TSSCSSSH--HHHHHHHHHHHTTCEEE
T ss_pred ccEEEEEEeCCCCCEEEEEEEecCCCC----CCCCeEEEecCCee--------eecccccc--ccchHHHHHHhhhheee
Confidence 467788899999999999999998743 25699999875411 22222100 01123578999999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. +.|+-
T Consensus 143 s----vdYRl 148 (358)
T d1jkma_ 143 M----VDFRN 148 (358)
T ss_dssp E----EECCC
T ss_pred e----eeecc
Confidence 8 44554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.08 E-value=0.073 Score=49.76 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=71.3
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~ 111 (595)
......++|||+.+ .+...+. .....|+.++..++....+...... ......+.+.++|+ |+++...
T Consensus 83 ~p~gla~~~dG~l~-va~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~nd~~~d~~G~-l~vtd~~---- 149 (319)
T d2dg1a1 83 NPAAIKIHKDGRLF-VCYLGDF-----KSTGGIFAATENGDNLQDIIEDLST--AYCIDDMVFDSKGG-FYFTDFR---- 149 (319)
T ss_dssp SEEEEEECTTSCEE-EEECTTS-----SSCCEEEEECTTSCSCEEEECSSSS--CCCEEEEEECTTSC-EEEEECC----
T ss_pred CeeEEEECCCCCEE-EEecCCC-----ccceeEEEEcCCCceeeeeccCCCc--ccCCcceeEEeccc-eeecccc----
Confidence 35567899999743 3222110 2345688888877775554332111 11234678899997 5554211
Q ss_pred CCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCC-CeeecCCC-CeeeeeEECCCCCeE
Q 007620 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYV 189 (595)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~lt~~-~~~~~~~~SpDg~~l 189 (595)
+.. . .....++.++.++ ..+.+... ..-..++|+|||+.|
T Consensus 150 ------------------~~~-------------~-------~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 150 ------------------GYS-------------T-------NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp ------------------CBT-------------T-------BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred ------------------ccc-------------c-------cCcceeEEEecccceeEEEeeccceeeeeeeccccceE
Confidence 000 0 0135688888866 45555432 233578999999999
Q ss_pred EEEEcccCccccccCcccceeEEEEcCC
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTD 217 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (595)
+++... ...|++++++
T Consensus 192 yvad~~------------~~~I~~~d~~ 207 (319)
T d2dg1a1 192 WVTETT------------ANRLHRIALE 207 (319)
T ss_dssp EEEEGG------------GTEEEEEEEC
T ss_pred EEeccc------------CCceEEEEEc
Confidence 888643 2478888764
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.04 E-value=0.00038 Score=67.61 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=48.3
Q ss_pred CceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 480 ~~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
...|.|+++ .||.+|+|+|+.|.+- .|.|+||++|+- + +.........+.|+++||+||
T Consensus 104 ~~~e~v~ip-~dg~~l~g~l~~P~~~-----~~~P~Vi~~hG~------------~---~~~e~~~~~~~~l~~~G~~vl 162 (360)
T d2jbwa1 104 PPAERHELV-VDGIPMPVYVRIPEGP-----GPHPAVIMLGGL------------E---STKEESFQMENLVLDRGMATA 162 (360)
T ss_dssp SCEEEEEEE-ETTEEEEEEEECCSSS-----CCEEEEEEECCS------------S---CCTTTTHHHHHHHHHTTCEEE
T ss_pred CCeEEeecC-cCCcccceEEEecCCC-----CCceEEEEeCCC------------C---ccHHHHHHHHHHHHhcCCEEE
Confidence 367888887 5999999999999762 245999997631 1 111112234578999999999
Q ss_pred eCCCCceeec
Q 007620 560 AGPSIPIIGE 569 (595)
Q Consensus 560 ~~~~~~~~~~ 569 (595)
. ++.|..|.
T Consensus 163 ~-~D~~G~G~ 171 (360)
T d2jbwa1 163 T-FDGPGQGE 171 (360)
T ss_dssp E-ECCTTSGG
T ss_pred E-Eccccccc
Confidence 9 88876654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.01 E-value=0.11 Score=50.74 Aligned_cols=108 Identities=8% Similarity=0.168 Sum_probs=62.4
Q ss_pred cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccccc--ccceEEecCCcEEEEEecCCCCCCCCccc
Q 007620 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV--FGSFVWVNNSTLLIFTIPSSRRDPPKKTM 117 (595)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~--~~~~~Wspdg~~l~~~~~~~~~~~~~~~~ 117 (595)
..|.+..|....+. .....++......++...|.+.....-+.. ...+.+|||+++|+|....
T Consensus 81 ~~g~~y~~~~~~~~-----~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~---------- 145 (430)
T d1qfma1 81 KKGKRYFYFYNTGL-----QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA---------- 145 (430)
T ss_dssp EETTEEEEEEECSS-----CSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEE----------
T ss_pred EeCCEEEEEEecCC-----CccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEecc----------
Confidence 35777766665432 233456666655566555543221110111 2356889999999997421
Q ss_pred cCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCCeeecCCC-CeeeeeEECCCCCeEEEEEcc
Q 007620 118 VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (595)
Q Consensus 118 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~lt~~-~~~~~~~~SpDg~~l~~~~~~ 195 (595)
+|. ....|+++|+ +|+.....-+ .....+.|++|++.|+|+...
T Consensus 146 -----------~G~-----------------------e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~ 191 (430)
T d1qfma1 146 -----------SGS-----------------------DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYP 191 (430)
T ss_dssp -----------TTC-----------------------SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECC
T ss_pred -----------ccC-----------------------chheeEEeccCcceecccccccccccceEEcCCCCEEEEEEec
Confidence 121 1357888999 6654322111 122468999999999999765
Q ss_pred c
Q 007620 196 R 196 (595)
Q Consensus 196 ~ 196 (595)
.
T Consensus 192 ~ 192 (430)
T d1qfma1 192 Q 192 (430)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=97.00 E-value=0.0005 Score=65.38 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=43.4
Q ss_pred CceEEEEEECCCCc-EEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHh-ccCeE
Q 007620 480 LQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (595)
Q Consensus 480 ~~~e~v~~~~~DG~-~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la-~~GY~ 557 (595)
+..+.+++.+.||. +|.++||+|.+-+ .|+|+|||+|+|-| +.|.+..+ ....+.+| +.||+
T Consensus 48 v~~~~~~~~~~~g~~~i~~~~~~P~~~~----~~~Pvvv~iHGGG~--------~~g~~~~~----~~~~~~la~~~G~~ 111 (317)
T d1lzla_ 48 VSLRELSAPGLDGDPEVKIRFVTPDNTA----GPVPVLLWIHGGGF--------AIGTAESS----DPFCVEVARELGFA 111 (317)
T ss_dssp EEEEEEEECCSTTCCCEEEEEEEESSCC----SCEEEEEEECCSTT--------TSCCGGGG----HHHHHHHHHHHCCE
T ss_pred ceEEEEEEecCCCCceEEEEEECCCCCC----CCCcEEEEecCccc--------cccccccc----chHHHhHHhhcCCc
Confidence 47788999999995 7999999998632 36799999875411 22222111 11234455 45999
Q ss_pred EEe
Q 007620 558 VLA 560 (595)
Q Consensus 558 Vl~ 560 (595)
|+.
T Consensus 112 V~~ 114 (317)
T d1lzla_ 112 VAN 114 (317)
T ss_dssp EEE
T ss_pred ccc
Confidence 998
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=96.88 E-value=0.00035 Score=68.61 Aligned_cols=70 Identities=21% Similarity=0.425 Sum_probs=44.4
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCccc--CCCCchhHHHhccCeEE
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS--GMTPTSSLIFLARRFAV 558 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~--~~~~~~~q~la~~GY~V 558 (595)
..+-|.++.+||.+|.+.||+|.+ ++ |.|+||..+| |.... ...+.+..+. .......++||++||+|
T Consensus 27 ~~~~v~ipmrDG~~L~~~v~~P~~---~~--~~P~il~~tp--Y~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~Gy~v 96 (385)
T d2b9va2 27 IKREVMVPMRDGVKLYTVIVIPKN---AR--NAPILLTRTP--YNAKG---RANRVPNALTMREVLPQGDDVFVEGGYIR 96 (385)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETT---CC--SEEEEEEEES--SCHHH---HTCSSTTCSSHHHHSCGGGHHHHHTTCEE
T ss_pred eEeEEEEECCCCCEEEEEEEEcCC---CC--ceeEEEEEcc--CCCCC---ccccCCcccccccccchHHHHHHhCCcEE
Confidence 455688999999999999999975 23 4499998643 11000 0011111111 11223468999999999
Q ss_pred Ee
Q 007620 559 LA 560 (595)
Q Consensus 559 l~ 560 (595)
|.
T Consensus 97 v~ 98 (385)
T d2b9va2 97 VF 98 (385)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.80 E-value=0.19 Score=46.21 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCeeecCC-CCeeeeeEECCCCCeEEEEE
Q 007620 157 AQLVLGSLDGTAKDFGT-PAVYTAVEPSPDQKYVLITS 193 (595)
Q Consensus 157 ~~l~~~d~~g~~~~lt~-~~~~~~~~~SpDg~~l~~~~ 193 (595)
.+|++++.+|+.+.+.. ......++++|||+ |+++.
T Consensus 49 ~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~-l~v~~ 85 (302)
T d2p4oa1 49 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATG 85 (302)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEE
T ss_pred CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCC-eEEEe
Confidence 46788888776555432 33456889999998 44443
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=96.72 E-value=0.0012 Score=60.78 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.0
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
+.|.+++++.+| +...+||+|++|+++|+| |+|++.|++
T Consensus 26 ~v~~~~~~~~~~-~r~~~vylP~~y~~~k~y--Pvl~~lhG~ 64 (273)
T d1wb4a1 26 RIVKETYTGING-TKSLNVYLPYGYDPNKKY--NIFYLMHGG 64 (273)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCC--EEEEEECCT
T ss_pred eEEEEEEecCCC-eEEEEEEeCCCCCCCCCc--eEEEEEeCC
Confidence 788999999998 569999999999998866 999998753
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.013 Score=56.79 Aligned_cols=62 Identities=23% Similarity=0.087 Sum_probs=37.6
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCc--cccccccceEEecCCcEEEEEe
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~--~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
+....||||| .|| +... ...|.++|+.+++.......... .....+..+.|+|||+.|+...
T Consensus 187 ~~~v~~s~dg-~la-sgs~---------Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs 250 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TGFN---------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250 (393)
T ss_dssp CCEEEECTTS-EEE-EECT---------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred EEEEEECCCC-EEE-EEeC---------CCcEEEEeecccccccccccccccccccceEEEcccccccceeeeec
Confidence 4567899998 443 3322 25577779988765432221110 0112466899999999887753
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.67 E-value=0.011 Score=56.80 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=46.5
Q ss_pred eEEEecCCCCCCCCceee---ecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc----
Q 007620 7 IGIHRLLPDDSLGPEKEV---HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE---- 79 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l---t~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~---- 79 (595)
|++.++.. .|....+ .....+.......|+|||+++ |+.. +...+|.++++++++...+..
T Consensus 169 v~~~~~~~---~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~-yv~~--------e~~~~V~v~~~~~~~~~~~~~~~~~ 236 (365)
T d1jofa_ 169 LWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYL-YALM--------EAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp EEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEE-EEEE--------TTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEccC---CCceeeccceeecCCCCceEEEEECCCCceE-EEec--------cCCCEEEEEEecCCCceEEEEeeee
Confidence 55665542 4433322 222334457778999999865 5554 245778888876553221100
Q ss_pred --CCCc---------cccccccceEEecCCcEEEEE
Q 007620 80 --SPDI---------CLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 80 --~~~~---------~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.... ........+.++|||+.|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 0000 000012357899999998876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.58 E-value=0.14 Score=47.18 Aligned_cols=78 Identities=13% Similarity=-0.010 Sum_probs=46.1
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCcccc
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (595)
|+-.|++ +|+.+.+. ++. ......+.+||+.++ .. ...|+++|.++|+.+.+.........
T Consensus 42 I~r~d~~----~g~~~~~~-~~~--~~~~i~~~~dg~l~v-a~-----------~~gl~~~d~~tg~~~~l~~~~~~~~~ 102 (295)
T d2ghsa1 42 LHELHLA----SGRKTVHA-LPF--MGSALAKISDSKQLI-AS-----------DDGLFLRDTATGVLTLHAELESDLPG 102 (295)
T ss_dssp EEEEETT----TTEEEEEE-CSS--CEEEEEEEETTEEEE-EE-----------TTEEEEEETTTCCEEEEECSSTTCTT
T ss_pred EEEEECC----CCeEEEEE-CCC--CcEEEEEecCCCEEE-EE-----------eCccEEeecccceeeEEeeeecCCCc
Confidence 4444554 45444333 444 366778888886443 32 14699999999998887654332111
Q ss_pred ccccceEEecCCcEEEEE
Q 007620 87 AVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 87 ~~~~~~~Wspdg~~l~~~ 104 (595)
.........|+|+. ++.
T Consensus 103 ~~~nd~~vd~~G~i-w~~ 119 (295)
T d2ghsa1 103 NRSNDGRMHPSGAL-WIG 119 (295)
T ss_dssp EEEEEEEECTTSCE-EEE
T ss_pred ccceeeEECCCCCE-EEE
Confidence 12346678889974 443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.13 Score=46.52 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=60.1
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCe
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (595)
....++|||||++|+..... ..+.+||+..+...... ... .......+.|+|+++.
T Consensus 164 ~v~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~~~~~~-~~~----------h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVM-------------GKILLYDLQSREVKTSR-WAF----------RTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEECC-SCC----------CSSCEEEEEECCCC--
T ss_pred ceeEEEeccCcccccccccc-------------ccccceeeccccccccc-ccc----------cccccceeeecccccc
Confidence 45688999999998877542 36889998866543211 000 0011234677777652
Q ss_pred eEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCccccceeecCCCcEEEEEEeecccceEEEEE
Q 007620 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (595)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~ 329 (595)
..... .+ ...-........+++|++ .++++... +......+..+.|+||+. ++... .++..+||.+
T Consensus 220 ~~~~~--~~-~~~l~sgs~D~~i~iw~~--~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g--~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEE--IE-EDLVATGSLDTNIFIYSV--KRPMKIIKALNAHKDGVNNLLWETPST-LVSSG--ADACIKRWNV 286 (287)
T ss_dssp ----C--CS-CCEEEEEETTSCEEEEES--SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE--TTSCEEEEEE
T ss_pred ccccc--CC-CCeeEeecCCCeEEEEEC--CCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE--CCCeEEEEEE
Confidence 11100 00 000000012235777775 12222222 223345677889999875 44332 2344566643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.29 Score=44.39 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=40.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l 101 (595)
.+|.+-+.. .+...+|||||++||-.+. ++.-.||-++.............. ...+..+.|+|++..+
T Consensus 4 v~~~~~h~d-~I~~l~fsp~~~~L~s~s~--------Dg~v~iwd~~~~~~~~~~~~~~~h---~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 4 VQIEQAPKD-YISDIKIIPSKSLLLITSW--------DGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EECSSCCSS-CEEEEEEEGGGTEEEEEET--------TSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEE
T ss_pred EEcCCCCCC-CEEEEEEeCCCCEEEEEEC--------CCeEEEEEccCCCcceEEEEecCC---CCCEEEEEEeCCCCCE
Confidence 355544443 6899999999999887653 344555544432222222211111 1256789999987655
Q ss_pred EEE
Q 007620 102 IFT 104 (595)
Q Consensus 102 ~~~ 104 (595)
+++
T Consensus 72 l~s 74 (342)
T d1yfqa_ 72 IYV 74 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.45 E-value=0.0098 Score=58.32 Aligned_cols=93 Identities=13% Similarity=-0.032 Sum_probs=58.0
Q ss_pred eeeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEeccc-----ccc----cCCCceEEEEEECCCCce
Q 007620 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE-----EDN----VSSCKLRVWIADAETGEA 74 (595)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~-----~~~----~~~~~~~L~v~d~~~g~~ 74 (595)
...|.+.|+. +++..++...+........++||||++++....... +++ .......+-.+|..+.+.
T Consensus 93 ~~rVavIDl~----t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 93 NTRVARIRLD----IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp TTEEEEEETT----TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred CCEEEEEECC----CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 3467777887 788777776777767888999999997654433210 000 001123345578777653
Q ss_pred -EecccCCCccccccccceEEecCCcEEEEEec
Q 007620 75 -KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 75 -~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
.++.- .. ....+.++|||+++++...
T Consensus 169 ~~qI~v-~~-----~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 169 AWQVIV-DG-----NLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp EEEEEE-SS-----CCCCEEECSSSSEEEEEES
T ss_pred eEEEec-CC-----CccceEECCCCCEEEEEec
Confidence 33321 11 3568999999999888754
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=96.39 E-value=0.0022 Score=60.27 Aligned_cols=64 Identities=9% Similarity=-0.101 Sum_probs=43.9
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (595)
--.++..||..|++|++.|.+-.+ + +.|+||.+|+- ... ...+....++|+++||.|+. +|
T Consensus 6 ~h~~~~~dg~~l~~w~~~p~~~~~-~--~~~~Vvi~HG~--------------~~~-~~~~~~~a~~L~~~G~~Vi~-~D 66 (302)
T d1thta_ 6 AHVLRVNNGQELHVWETPPKENVP-F--KNNTILIASGF--------------ARR-MDHFAGLAEYLSTNGFHVFR-YD 66 (302)
T ss_dssp EEEEEETTTEEEEEEEECCCTTSC-C--CSCEEEEECTT--------------CGG-GGGGHHHHHHHHTTTCCEEE-EC
T ss_pred eeEEEcCCCCEEEEEEecCcCCCC-C--CCCEEEEeCCC--------------cch-HHHHHHHHHHHHHCCCEEEE-ec
Confidence 345677899999999999987444 3 34889987642 110 01112236899999999999 76
Q ss_pred Cce
Q 007620 564 IPI 566 (595)
Q Consensus 564 ~~~ 566 (595)
.+.
T Consensus 67 ~rG 69 (302)
T d1thta_ 67 SLH 69 (302)
T ss_dssp CCB
T ss_pred CCC
Confidence 654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.085 Score=50.63 Aligned_cols=112 Identities=10% Similarity=-0.027 Sum_probs=59.5
Q ss_pred eeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCce-EEEeccCCCCccCCccccccccCCCCceeecCCC
Q 007620 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (595)
Q Consensus 176 ~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (595)
.+..++|||||+.|+..+.+.. ...+.+||+.++. ...+............+.++......+.|+||++
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~ 302 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred eEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence 4568899999999988765321 2357789988554 3444322111111112223333345688999997
Q ss_pred eeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCcee-ccccCcc----ccceeecCCCcEE
Q 007620 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLR----FRSVSWCDDSLAL 313 (595)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~-l~~~~~~----~~~~~wspDg~~l 313 (595)
. |+-. .....+.+||+ +.|+... |...... ...+.|++++..+
T Consensus 303 ~-l~S~------------s~D~~v~vWd~---~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 303 T-LCSA------------GWDGKLRFWDV---KTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp E-EEEE------------ETTSEEEEEET---TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred e-eEEE------------CCCCEEEEEEC---CCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 3 3221 12347888887 3334332 3322222 2346788887654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.74 E-value=0.35 Score=41.02 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=76.5
Q ss_pred eeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccc
Q 007620 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (595)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (595)
.||+.+|+ +-|++.+|.. +. ...-.+..-|++.|||+.+. .....||+++ +|+.+.|+..+.
T Consensus 83 ai~~~Nlk---~~GEE~~i~s-pk--~vRI~S~~yddk~vvF~Gas-------ed~~~LYvie--gGklrkL~~vPp--- 144 (313)
T d2hu7a1 83 ALFKVNTS---RPGEEQRLEA-VK--PMRILSGVDTGEAVVFTGAT-------EDRVALYALD--GGGLRELARLPG--- 144 (313)
T ss_dssp EEEEEETT---STTCEEECTT-SC--SBEEEEEEECSSCEEEEEEC-------SSCEEEEEEE--TTEEEEEEEESS---
T ss_pred eEEEEccC---CCCeeeEecC-Cc--eEEEEEeeecCceEEEeccc-------CCceEEEEEe--CCceeeeccCCC---
Confidence 57888887 4788888873 32 24455666699999999875 3457788775 799998876553
Q ss_pred cccccceEEec--CCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEc
Q 007620 86 NAVFGSFVWVN--NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (595)
Q Consensus 86 ~~~~~~~~Wsp--dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 163 (595)
|.|.- .+++|+-..-- .| ....+|+.|
T Consensus 145 ------FsFVtDI~~d~I~G~g~~---------------------~g------------------------~~~sfF~ad 173 (313)
T d2hu7a1 145 ------FGFVSDIRGDLIAGLGFF---------------------GG------------------------GRVSLFTSN 173 (313)
T ss_dssp ------CEEEEEEETTEEEEEEEE---------------------ET------------------------TEEEEEEEE
T ss_pred ------cceEEeccCCeEEEEeee---------------------cC------------------------CcceEEEEe
Confidence 23322 35555442100 01 123488999
Q ss_pred C-CCCeeecCCCC-eeeeeEECCCCCe
Q 007620 164 L-DGTAKDFGTPA-VYTAVEPSPDQKY 188 (595)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~ 188 (595)
+ +|..+.+++.+ .+.....+|+.|-
T Consensus 174 l~SG~lri~tpkeGS~~~ay~~~gnKV 200 (313)
T d2hu7a1 174 LSSGGLRVFDSGEGSFSSASISPGMKV 200 (313)
T ss_dssp TTTEEEEEECCSSEEEEEEEECTTSCE
T ss_pred cccCCEEEecCCCCcccceeEccCcee
Confidence 9 88999998775 5667888988775
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.62 E-value=0.0074 Score=56.77 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=43.2
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.|.+++.+.|| +|...+|.|.+ +. |+|||+|+|-| +.|.+..+. ....+++++.||+|+.
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-----~~--P~il~iHGGg~--------~~g~~~~~~---~~~~~l~~~~g~~Vv~ 115 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-----DS--PVLVYYHGGGF--------VICSIESHD---ALCRRIARLSNSTVVS 115 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-----SE--EEEEEECCSTT--------TSCCTGGGH---HHHHHHHHHHTSEEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-----Cc--eEEEEEcCCCC--------ccCChhhhh---hhhhhhhhcCCcEEEE
Confidence 677788888888 79999999952 22 99999876422 223222111 1112455556999998
Q ss_pred CCCCceeecC
Q 007620 561 GPSIPIIGEG 570 (595)
Q Consensus 561 ~~~~~~~~~~ 570 (595)
+.|+-.
T Consensus 116 ----v~Yrla 121 (311)
T d1jjia_ 116 ----VDYRLA 121 (311)
T ss_dssp ----EECCCT
T ss_pred ----eccccc
Confidence 666643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.47 Score=43.30 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=33.6
Q ss_pred EEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007620 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (595)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~ 104 (595)
.+.++|+.++.... ...|.+.++.+++......... .......|+|+++.++..
T Consensus 166 ~~~~~~~~~~~~~~----------d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 219 (355)
T d1nexb2 166 TVSGHGNIVVSGSY----------DNTLIVWDVAQMKCLYILSGHT----DRIYSTIYDHERKRCISA 219 (355)
T ss_dssp EEEEETTEEEEEET----------TSCEEEEETTTTEEEEEECCCS----SCEEEEEEETTTTEEEEE
T ss_pred ccccccceeeeecc----------cceeeeeecccccceeeeeccc----cccccccccccceeeecc
Confidence 46677776665432 2457777888776554432221 134578899999987765
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=95.52 E-value=0.0094 Score=54.04 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=34.1
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
+.+.++|.+. +|.+++.+|++|++|+++|+| |+||+.|+.
T Consensus 21 ~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~~~--Pvvv~lHG~ 61 (255)
T d1jjfa_ 21 QVVNISYFSTATNSTRPARVYLPPGYSKDKKY--SVLYLLHGI 61 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCB--CEEEEECCT
T ss_pred EEEEEEEEecCCCCEEEEEEEeCCCCCCCCCC--cEEEEEecC
Confidence 6778888765 899999999999999998877 999998753
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=95.40 E-value=0.0074 Score=56.55 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=29.5
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccC
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~ 522 (595)
..+.+++.. ||.+|.+.||+|.+.++ |+|+|||+|+|
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~~~----~~Pvvv~iHGG 81 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGVEP----PYPALVYYHGG 81 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTCCS----SEEEEEEECCS
T ss_pred cEEEEEEec-CCceEEEEEEeccccCC----CCCEEEEEecC
Confidence 567777765 89999999999987553 45999998754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.91 Score=40.92 Aligned_cols=55 Identities=7% Similarity=-0.100 Sum_probs=31.2
Q ss_pred ceEEeccCCCCCCCCc-eeccc-----cCccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 276 DIIYTQPAEPAEGEKP-EILHK-----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 276 ~~~~~~d~~~~~g~~~-~~l~~-----~~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
..+.+||+ ..++. +.+.. ....+..+.|+||+..++...........|+++|.+-
T Consensus 280 g~i~iwd~---~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 280 GTVKLWDL---KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEET---TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEEC---CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 46777786 32343 33321 1223667899999887766532212234677777753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=1.1 Score=40.70 Aligned_cols=48 Identities=2% Similarity=-0.060 Sum_probs=31.1
Q ss_pred EEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEeccc-CCCccccccccceEEecCCc
Q 007620 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNST 99 (595)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~-~~~~~~~~~~~~~~Wspdg~ 99 (595)
++++||++||-.+ . + ..|.++|+.+++...... ... .+..+.|+|++.
T Consensus 18 c~~~~~~~l~tgs-~-------D--g~i~vWd~~~~~~~~~l~~H~~-----~V~~l~~s~~~~ 66 (355)
T d1nexb2 18 CLQFEDNYVITGA-D-------D--KMIRVYDSINKKFLLQLSGHDG-----GVWALKYAHGGI 66 (355)
T ss_dssp EEEEETTEEEEEE-T-------T--TEEEEEETTTTEEEEEEECCSS-----CEEEEEEETTTE
T ss_pred EEEECCCEEEEEe-C-------C--CeEEEEECCCCcEEEEEECCCC-----CEEEEEEcCCCE
Confidence 5788998766433 2 2 456667998887544332 222 577899999763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.99 Score=40.28 Aligned_cols=184 Identities=12% Similarity=-0.021 Sum_probs=98.5
Q ss_pred eEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCccccccccccccc
Q 007620 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (595)
Q Consensus 62 ~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 141 (595)
.+|..+++++.+...+..... .+..+.+.+..+.|+++-..
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~-----~~~~id~d~~~~~lYw~D~~---------------------------------- 50 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS---------------------------------- 50 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCS-----SEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred CeEEEEECCCCcceeeeCCCC-----ceEEEEEEeCCCEEEEEECC----------------------------------
Confidence 568999999887666643222 34467788888888886110
Q ss_pred ccCcCCccceEEeecceEEEEcCCC-----Ceeec-CCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEE
Q 007620 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (595)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~d~~g-----~~~~l-t~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (595)
...|+..+++| ..+.+ ... .....+++-+-++.|+++... ...|.++
T Consensus 51 --------------~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v~ 104 (266)
T d1ijqa1 51 --------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 104 (266)
T ss_dssp --------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred --------------CCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEeE
Confidence 12344444432 11222 221 122356666668888887532 2478899
Q ss_pred cCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceec
Q 007620 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (595)
Q Consensus 215 d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l 294 (595)
+++|...+.+...... .+..+...|... .|||.... ....++..+. +|...+.+
T Consensus 105 ~~~g~~~~~~~~~~~~------------~P~~l~vd~~~g-~ly~~~~~----------~~~~I~r~~~---dGs~~~~l 158 (266)
T d1ijqa1 105 DTKGVKRKTLFRENGS------------KPRAIVVDPVHG-FMYWTDWG----------TPAKIKKGGL---NGVDIYSL 158 (266)
T ss_dssp ETTSSSEEEEEECTTC------------CEEEEEEETTTT-EEEEEECS----------SSCEEEEEET---TSCCEEEE
T ss_pred ecCCceEEEEEcCCCC------------CcceEEEEcccC-eEEEeccC----------CCcceeEecc---CCCceecc
Confidence 9987765554322110 122344444332 46665321 1124555554 55444445
Q ss_pred cccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 295 HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 295 ~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
.... .....+++.+.+..|++.. .....|..++++|. ..+.+
T Consensus 159 ~~~~~~~p~gl~iD~~~~~lYw~d---~~~~~I~~~~~dG~--~~~~~ 201 (266)
T d1ijqa1 159 VTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG--NRKTI 201 (266)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEE
T ss_pred cccccceeeEEEeeccccEEEEec---CCcCEEEEEECCCC--CEEEE
Confidence 4332 2345677777776665543 23348999999883 44444
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.16 Score=45.67 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=35.6
Q ss_pred cccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007620 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (595)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~ 103 (595)
.+...+|||||++|+.... ...|.++++.+++......... ...+..+.|+|+++....
T Consensus 164 ~v~~~~~s~~~~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDV----------MGKILLYDLQSREVKTSRWAFR---TSKINAISWKPAEKGANE 222 (287)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEECCSCCC---SSCEEEEEECCCC-----
T ss_pred ceeEEEeccCccccccccc----------cccccceeeccccccccccccc---ccccceeeeccccccccc
Confidence 5778899999998876542 2456777988776433211111 124668899999886544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=1.1 Score=39.89 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=72.8
Q ss_pred ceEEEEcCCC-CeeecCC-C-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccC
Q 007620 157 AQLVLGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (595)
Q Consensus 157 ~~l~~~d~~g-~~~~lt~-~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~ 233 (595)
..|++++++| ..+.+.. . .....+++..-++.|+++... ...|.++++++...+.+......
T Consensus 58 ~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~------------~~~I~~~~~dg~~~~~l~~~~l~--- 122 (263)
T d1npea_ 58 PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------LDRIEVAKMDGTQRRVLFDTGLV--- 122 (263)
T ss_dssp TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSCS---
T ss_pred CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC------------CCEEEEEecCCceEEEEeccccc---
Confidence 4577777765 3333322 2 233456666567788877532 24788888887766555332110
Q ss_pred CccccccccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcE
Q 007620 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLA 312 (595)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~ 312 (595)
.+..+...|... .|||...- . ....++..++ +|...+.+.... .....+++.+.+..
T Consensus 123 ---------~p~~l~vdp~~g-~ly~t~~~-~--------~~~~I~r~~~---dG~~~~~i~~~~~~~P~glaiD~~~~~ 180 (263)
T d1npea_ 123 ---------NPRGIVTDPVRG-NLYWTDWN-R--------DNPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQ 180 (263)
T ss_dssp ---------SEEEEEEETTTT-EEEEEECC-S--------SSCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred ---------CCcEEEEecccC-cEEEeecC-C--------CCcEEEEecC---CCCCceeeeeecccccceEEEeecCcE
Confidence 122344455443 36665211 0 0123555454 544444443222 22334566666655
Q ss_pred EEEEEeecccceEEEEEeCCCCCCCcEEE
Q 007620 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (595)
Q Consensus 313 l~~~~~~~~~~~~L~~~d~~~~~~~~~~l 341 (595)
|++.+ .+...|..+++++ ...+.+
T Consensus 181 lYw~d---~~~~~I~~~~~~g--~~~~~v 204 (263)
T d1npea_ 181 LCWVD---AGTHRAECLNPAQ--PGRRKV 204 (263)
T ss_dssp EEEEE---TTTTEEEEEETTE--EEEEEE
T ss_pred EEEEe---CCCCEEEEEECCC--CCeEEE
Confidence 54432 2334788899887 334444
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.91 E-value=0.036 Score=53.99 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=25.3
Q ss_pred ceEEEEEECC-----CCc--EEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRK-----DGV--PLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~-----DG~--~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
-.|.|.+.+. ||+ .|.+-|++|.. .+ ++|+|+...|
T Consensus 22 ~re~v~v~~~~dt~rDG~~d~l~~di~rP~~--~~---k~Pvil~~sP 64 (405)
T d1lnsa3 22 EREVLWVESPVDSEQRGENDLIKIQIIRPKS--TE---KLPVVMTASP 64 (405)
T ss_dssp EEEEEEEECSCCTTCSSSCCEEEEEEEECCC--SS---CEEEEEEECS
T ss_pred eEeEEEEeCCCCCCCCCCEeEEEEEEEccCC--CC---CceEEEEeCC
Confidence 4455666444 999 59999999975 22 4599997644
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=1.3 Score=39.51 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=117.0
Q ss_pred eEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCc----eEecccCCC
Q 007620 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESPD 82 (595)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~----~~~lt~~~~ 82 (595)
|.-.+|. +.....+. +.........|.+..++|+|+- .....|+..++.+.. ...+....-
T Consensus 12 I~~~~l~----~~~~~~~~--~~~~~~~~id~d~~~~~lYw~D---------~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 12 VRKMTLD----RSEYTSLI--PNLRNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEETT----SCCCEEEE--CSCSSEEEEEEETTTTEEEEEE---------TTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC----CCcceeee--CCCCceEEEEEEeCCCEEEEEE---------CCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 4445664 55556664 3333456778888899998753 234678888876422 122211110
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEE
Q 007620 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (595)
Q Consensus 83 ~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (595)
.....++...-++.|+++-. ...+|.++
T Consensus 77 ----~~p~glAvD~~~~~lY~~d~------------------------------------------------~~~~I~v~ 104 (266)
T d1ijqa1 77 ----QAPDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSVA 104 (266)
T ss_dssp ----SCCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEEE
T ss_pred ----CCcceEEEeeccceEEEEec------------------------------------------------CCCEEEeE
Confidence 02335666666777777511 12457777
Q ss_pred cCCCC-eeec-CCC-CeeeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccc
Q 007620 163 SLDGT-AKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (595)
Q Consensus 163 d~~g~-~~~l-t~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~ 239 (595)
+++|. .+.+ ... .....++..|...+|+++.... ...|+..+++|...+.+......
T Consensus 105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~-----------~~~I~r~~~dGs~~~~l~~~~~~--------- 164 (266)
T d1ijqa1 105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENIQ--------- 164 (266)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSCS---------
T ss_pred ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC-----------CcceeEeccCCCceecccccccc---------
Confidence 88773 3332 222 2345788888888888875322 23788999998777666432111
Q ss_pred cccCCCCceeecCCCeeEEEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccCcccc-ceeecCCCcEEEEEEe
Q 007620 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFR-SVSWCDDSLALVNETW 318 (595)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~~~~~-~~~wspDg~~l~~~~~ 318 (595)
.+..+.+.+.+. .|||... ..+.+...+. +|...+.+........ ....+-++..|+...+
T Consensus 165 ---~p~gl~iD~~~~-~lYw~d~-----------~~~~I~~~~~---dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~ 226 (266)
T d1ijqa1 165 ---WPNGITLDLLSG-RLYWVDS-----------KLHSISSIDV---NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 226 (266)
T ss_dssp ---CEEEEEEETTTT-EEEEEET-----------TTTEEEEEET---TSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred ---eeeEEEeecccc-EEEEecC-----------CcCEEEEEEC---CCCCEEEEEeCCCcccccEEEEEECCEEEEEEC
Confidence 112455665554 4887621 1235565565 5544444433322221 2233333444444322
Q ss_pred ecccceEEEEEeCCCC
Q 007620 319 YKTSQTRTWLVCPGSK 334 (595)
Q Consensus 319 ~~~~~~~L~~~d~~~~ 334 (595)
....|++++..++
T Consensus 227 ---~~~~I~~~~~~~g 239 (266)
T d1ijqa1 227 ---INEAIFSANRLTG 239 (266)
T ss_dssp ---TTTEEEEEETTTC
T ss_pred ---CCCeEEEEECCCC
Confidence 3347888887774
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.59 E-value=0.021 Score=50.34 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCC
Q 007620 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (595)
Q Consensus 485 v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (595)
|.+.+.+| +|+|++..|.+ + +.|++|++||++.. ||-.. +.....-...|+.+||.||. ++.
T Consensus 3 v~i~g~~G-~Le~~~~~~~~--~----~~~~~l~~Hp~p~~---------GG~~~-~~~~~~~a~~l~~~G~~~lr-fn~ 64 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE--K----SAPIAIILHPHPQF---------GGTMN-NQIVYQLFYLFQKRGFTTLR-FNF 64 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS--T----TCCEEEEECCCGGG---------TCCTT-SHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred EEEeCCCc-cEEEEEeCCCC--C----CCCEEEEECCCcCc---------CCcCC-cHHHHHHHHHHHhcCeeEEE-Eec
Confidence 66899999 89999875542 1 33899999986432 22100 00001123578999999998 665
Q ss_pred ceeec
Q 007620 565 PIIGE 569 (595)
Q Consensus 565 ~~~~~ 569 (595)
..+|.
T Consensus 65 RG~g~ 69 (218)
T d2i3da1 65 RSIGR 69 (218)
T ss_dssp TTSTT
T ss_pred CccCC
Confidence 55554
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=94.56 E-value=0.019 Score=52.21 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=35.7
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCC
Q 007620 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (595)
Q Consensus 484 ~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~ 563 (595)
-|.|-..+...++ ||+|.+ + +.|+|||+|+|.+. .|.... +....+.|+++||+|+.
T Consensus 41 dv~Yg~~~~~~lD--iy~P~~----~--~~P~vv~iHGG~w~--------~g~~~~----~~~~a~~l~~~G~~Vv~--- 97 (261)
T d2pbla1 41 NLSYGEGDRHKFD--LFLPEG----T--PVGLFVFVHGGYWM--------AFDKSS----WSHLAVGALSKGWAVAM--- 97 (261)
T ss_dssp EEESSSSTTCEEE--EECCSS----S--CSEEEEEECCSTTT--------SCCGGG----CGGGGHHHHHTTEEEEE---
T ss_pred CcCCCCCcCeEEE--EeccCC----C--CCCeEEEECCCCCc--------cCChhH----hhhHHHHHhcCCceeec---
Confidence 3455333344554 778854 2 45999998754221 011111 11235899999999999
Q ss_pred Cceeec
Q 007620 564 IPIIGE 569 (595)
Q Consensus 564 ~~~~~~ 569 (595)
+.|+-
T Consensus 98 -~~YRl 102 (261)
T d2pbla1 98 -PSYEL 102 (261)
T ss_dssp -ECCCC
T ss_pred -ccccc
Confidence 66664
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=94.53 E-value=0.033 Score=49.00 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=47.1
Q ss_pred ceEEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.+.+++.+.+| +|++.+.+|..-.+ .+.+++|.+||++. +||..... ....-.+.|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~~---~~~~~~vl~Hph~~---------~GG~~~~~-~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDVA---VQPVTAIVCHPLST---------EGGSMHNK-VVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTSC---CCSEEEEEECSCTT---------TTCSTTCH-HHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCCC---CCCcEEEEECCCCC---------CCcCCCCh-HHHHHHHHHHHcCCeEEE
Confidence 567789999999 79999999965332 23367777776532 23211000 001124789999999999
Q ss_pred CCCCceeec
Q 007620 561 GPSIPIIGE 569 (595)
Q Consensus 561 ~~~~~~~~~ 569 (595)
++....|.
T Consensus 73 -fd~RG~G~ 80 (218)
T d2fuka1 73 -FNFRSVGT 80 (218)
T ss_dssp -ECCTTSTT
T ss_pred -eecCCCcc
Confidence 66655443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.13 E-value=1.8 Score=38.40 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=73.4
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~~~~~~ 112 (595)
+....+.+..++|+|+- .....|++++++++..+.+....-. ....++...-++.|+++-.
T Consensus 38 ~~~ld~D~~~~~iywsd---------~~~~~I~~~~l~g~~~~~v~~~~~~----~p~~iAvD~~~~~lY~~d~------ 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTD---------ISEPSIGRASLHGGEPTTIIRQDLG----SPEGIALDHLGRTIFWTDS------ 98 (263)
T ss_dssp EEEEEEETTTTEEEEEE---------TTTTEEEEEESSSCCCEEEECTTCC----CEEEEEEETTTTEEEEEET------
T ss_pred EEEEEEEeCCCEEEEEE---------CCCCeEEEEEcccCCcEEEEEeccc----cccEEEEeccCCeEEEecc------
Confidence 44566777888887753 2346799999988766655322110 2234555555666777511
Q ss_pred CCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcCCCC-eeecCCC--CeeeeeEECCCCCeE
Q 007620 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQKYV 189 (595)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~lt~~--~~~~~~~~SpDg~~l 189 (595)
....|.+++++|. .+.|... .....++..|...+|
T Consensus 99 ------------------------------------------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~l 136 (263)
T d1npea_ 99 ------------------------------------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (263)
T ss_dssp ------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred ------------------------------------------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcE
Confidence 1245667777663 3333222 234578888988888
Q ss_pred EEEEcccCccccccCcccceeEEEEcCCCceEEEec
Q 007620 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~ 225 (595)
+++..... ...|+..+++|...+.+.
T Consensus 137 y~t~~~~~----------~~~I~r~~~dG~~~~~i~ 162 (263)
T d1npea_ 137 YWTDWNRD----------NPKIETSHMDGTNRRILA 162 (263)
T ss_dssp EEEECCSS----------SCEEEEEETTSCCCEEEE
T ss_pred EEeecCCC----------CcEEEEecCCCCCceeee
Confidence 88764321 236888899887666654
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=94.10 E-value=0.018 Score=52.36 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=37.6
Q ss_pred ceEEEEEECCCC-cEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEE
Q 007620 481 QKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (595)
Q Consensus 481 ~~e~v~~~~~DG-~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl 559 (595)
....+++....+ -...|.||+|.+... + |+|+||+.|+. ++... ...+..+.||++||+|+
T Consensus 22 ~~~~~~~~~~~~~g~~~~~ly~P~~~~~-g--~~P~Vv~~HG~------------~g~~~---~~~~~a~~lA~~Gy~V~ 83 (260)
T d1jfra_ 22 ATSQTSVSSLVASGFGGGTIYYPTSTAD-G--TFGAVVISPGF------------TAYQS---SIAWLGPRLASQGFVVF 83 (260)
T ss_dssp CEEEEEECTTTCSSSCCEEEEEESCCTT-C--CEEEEEEECCT------------TCCGG---GTTTHHHHHHTTTCEEE
T ss_pred ceeEEEeccCCcCcccCEEEEEcCCCCC-C--CccEEEEECCC------------CCCHH---HHHHHHHHHHhCCCEEE
Confidence 344445543322 134688999987432 2 55999998742 12111 11234689999999999
Q ss_pred e
Q 007620 560 A 560 (595)
Q Consensus 560 ~ 560 (595)
.
T Consensus 84 ~ 84 (260)
T d1jfra_ 84 T 84 (260)
T ss_dssp E
T ss_pred E
Confidence 9
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=2.6 Score=37.58 Aligned_cols=59 Identities=19% Similarity=0.045 Sum_probs=34.3
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecC
Q 007620 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (595)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (595)
+.|+++... +.. ++++||++||-.+ . + ..|.++|+.+++..+...... ..+..+.|+|+
T Consensus 10 ~~l~GH~~~--V~s-~~~~~g~~l~sgs-~-------D--g~i~vWd~~~~~~~~~~~~h~----~~V~~v~~~~~ 68 (342)
T d2ovrb2 10 KVLKGHDDH--VIT-CLQFCGNRIVSGS-D-------D--NTLKVWSAVTGKCLRTLVGHT----GGVWSSQMRDN 68 (342)
T ss_dssp EEEECSTTS--CEE-EEEEETTEEEEEE-T-------T--SCEEEEETTTCCEEEECCCCS----SCEEEEEEETT
T ss_pred EEECCcCCc--eEE-EEEECCCEEEEEe-C-------C--CeEEEEECCCCCEEEEEeCCC----CCEEEEEeCCC
Confidence 445543332 333 5889999876433 2 2 346666999888655432211 14567888875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.43 E-value=3.2 Score=36.34 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=56.2
Q ss_pred eeeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCee
Q 007620 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (595)
Q Consensus 177 ~~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~ 256 (595)
...+++.++|+ |++.... ...+.+++..+........... ..+..+...++|.
T Consensus 100 p~~iavd~~g~-i~v~d~~------------~~~~~~~~~~~~~~~~~~~~~~------------~~p~~i~~~~~g~-- 152 (260)
T d1rwia_ 100 PEGLAVDTQGA-VYVADRG------------NNRVVKLAAGSKTQTVLPFTGL------------NDPDGVAVDNSGN-- 152 (260)
T ss_dssp EEEEEECTTCC-EEEEEGG------------GTEEEEECTTCSSCEECCCCSC------------CSCCEEEECTTCC--
T ss_pred cccccccccce-eEeeccc------------cccccccccccceeeeeeeccc------------CCcceeeecCCCC--
Confidence 35788889887 4444322 1256667766554333211100 1123455566765
Q ss_pred EEEEEeecCCCcccccCCcceEEeccCCCCCCCCceecccc-CccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
+++... ....++.++. ++.....+... -.....+.+.++|..++.+. ...+|++++.++
T Consensus 153 ~~v~~~-----------~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~ 212 (260)
T d1rwia_ 153 VYVTDT-----------DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGS 212 (260)
T ss_dssp EEEEEG-----------GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTC
T ss_pred Eeeecc-----------cccccccccc---ccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCC
Confidence 544321 1234566564 33222222211 12334567778887655542 234788888876
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.05 E-value=3.6 Score=36.02 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=55.7
Q ss_pred eeeEECCCCCeEEEEEcccCccccccCcccceeEEEEcCCCceEEEeccCCCCccCCccccccccCCCCceeecCCCeeE
Q 007620 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (595)
Q Consensus 178 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (595)
..++++|+|+ |+++... ...+.+++.++.....+..... ..+..+...++|. |
T Consensus 143 ~~i~~~~~g~-~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~~------------~~p~gi~~d~~g~--l 195 (260)
T d1rwia_ 143 DGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAGT--V 195 (260)
T ss_dssp CEEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTCC--E
T ss_pred ceeeecCCCC-Eeeeccc------------cccccccccccceeeeeecccc------------CCCccceeeeeee--e
Confidence 4678899987 5554332 2378889988765554432111 1122345556664 6
Q ss_pred EEEEeecCCCcccccCCcceEEeccCCCCCCCCceeccccC-ccccceeecCCCcEEEEEEeecccceEEEEEeCCC
Q 007620 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (595)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~g~~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~L~~~d~~~ 333 (595)
|+.. .....++.++. .++....+.... .....+++++||..++.+. ...+|++++..+
T Consensus 196 ~vsd-----------~~~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~----~~~rI~~i~~~~ 254 (260)
T d1rwia_ 196 YVTE-----------HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR----GNDRVVKLTSLE 254 (260)
T ss_dssp EEEE-----------TTTTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCCEEEEEG----GGTEEEEECCCG
T ss_pred eeee-----------cCCCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC----CCCEEEEEeCCC
Confidence 5442 11234554453 322222222221 2234567778876555432 233777776543
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=91.87 E-value=0.22 Score=46.77 Aligned_cols=75 Identities=12% Similarity=0.006 Sum_probs=44.1
Q ss_pred ceEEEEEECCCCcEEEEEEE-c-CCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC--CchhHHHhccCe
Q 007620 481 QKEMIKYQRKDGVPLTATLY-L-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARRF 556 (595)
Q Consensus 481 ~~e~v~~~~~DG~~i~g~l~-~-P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~--~~~~q~la~~GY 556 (595)
..|...+++.||..|.-+-+ . |.+..... +.|+||++|+-+ ++-..|.... ...+.+|+++||
T Consensus 26 ~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~--~~~~vlllHG~~-----------~~~~~~~~~~~~~sla~~L~~~Gy 92 (377)
T d1k8qa_ 26 PAEEYEVVTEDGYILGIDRIPYGRKNSENIG--RRPVAFLQHGLL-----------ASATNWISNLPNNSLAFILADAGY 92 (377)
T ss_dssp CCEEEEEECTTSEEEEEEEECSCSSCCTTTT--TCCEEEEECCTT-----------CCGGGGSSSCTTTCHHHHHHHTTC
T ss_pred CceEEEEEcCCCCEEEEEEecCCCCCCccCC--CCCeEEEECCCc-----------cchhHHhhcCccchHHHHHHHCCC
Confidence 56888899999976655544 2 22222222 338888876421 1111222211 123568999999
Q ss_pred EEEeCCCCceeec
Q 007620 557 AVLAGPSIPIIGE 569 (595)
Q Consensus 557 ~Vl~~~~~~~~~~ 569 (595)
-|+. +|....|.
T Consensus 93 ~V~~-~D~rG~G~ 104 (377)
T d1k8qa_ 93 DVWL-GNSRGNTW 104 (377)
T ss_dssp EEEE-CCCTTSTT
T ss_pred EEEE-EcCCCCCC
Confidence 9999 77776664
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=91.63 E-value=0.048 Score=50.35 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=21.2
Q ss_pred chhHHHhccCeEEEeCCCCceeecCCCCC
Q 007620 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (595)
Q Consensus 546 ~~~q~la~~GY~Vl~~~~~~~~~~~~~~~ 574 (595)
.++++|+++||.|+. +|.|..|.-++.+
T Consensus 83 ~~~~~~~~~Gy~V~~-~D~~G~G~S~~~~ 110 (318)
T d1qlwa_ 83 GWDEYFLRKGYSTYV-IDQSGRGRSATDI 110 (318)
T ss_dssp CHHHHHHHTTCCEEE-EECTTSTTSCCCC
T ss_pred hHHHHHHhCCCEEEE-ecCCCCCCCCCcc
Confidence 357899999999999 8887766544433
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=91.36 E-value=0.14 Score=45.52 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=41.2
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
+++..||.+|+...+-|++ . |.||++|+ .+.....+ ....+.|+++||.|+. +|.|
T Consensus 2 ~i~~~dG~~l~y~~~G~~~------~--~~vv~lHG--------------~~~~~~~~-~~~~~~l~~~g~~vi~-~D~~ 57 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD------G--LPVVFHHG--------------WPLSADDW-DNQMLFFLSHGYRVIA-HDRR 57 (275)
T ss_dssp EEECTTSCEEEEEEESCTT------S--CEEEEECC--------------TTCCGGGG-HHHHHHHHHTTCEEEE-ECCT
T ss_pred EEEecCCCEEEEEEecCCC------C--CeEEEECC--------------CCCCHHHH-HHHHHHHHhCCCEEEE-Eecc
Confidence 4678999999999986643 2 56777653 22211111 1235688999999999 8888
Q ss_pred eeecCC
Q 007620 566 IIGEGD 571 (595)
Q Consensus 566 ~~~~~~ 571 (595)
..|.-+
T Consensus 58 G~G~s~ 63 (275)
T d1a88a_ 58 GHGRSD 63 (275)
T ss_dssp TSTTSC
T ss_pred cccccc
Confidence 777533
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=90.51 E-value=0.11 Score=46.24 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=27.3
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEEecc
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~ 521 (595)
.++.++|++. .|.+++.+||+|.++++ ++| |+||+.|+
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~~~-~~~--Pvvv~lhG 52 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDVTA-EER--PLAVLLDG 52 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCC--CEEEESSH
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCCCC-CCC--CEEEEeCC
Confidence 7888889875 68999999999999875 445 99999764
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=0.19 Score=46.27 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=42.4
Q ss_pred ceEEEEEECC-CCcEEEEEEEcCCCCC-----CCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhcc
Q 007620 481 QKEMIKYQRK-DGVPLTATLYLPPGYD-----QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR 554 (595)
Q Consensus 481 ~~e~v~~~~~-DG~~i~g~l~~P~~~~-----~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~ 554 (595)
+.+.++|.+. -|.++.-.||+|++|. ++|+| |||++.|+. .+....|.... ...++....
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~y--PVLYlLhG~-----------~~~~~~w~~~~-~~~~~~~~~ 78 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRI--PTVFYLSGL-----------TCTPDNASEKA-FWQFQADKY 78 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTB--CEEEEECCT-----------TCCHHHHHHHS-CHHHHHHHH
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCC--CEEEEcCCC-----------CCCHHHHHHhh-hHHHHHHHc
Confidence 5566777665 6789999999999984 33445 999998742 11222232111 113466667
Q ss_pred CeEEEe
Q 007620 555 RFAVLA 560 (595)
Q Consensus 555 GY~Vl~ 560 (595)
|++|+.
T Consensus 79 ~~~vv~ 84 (299)
T d1pv1a_ 79 GFAIVF 84 (299)
T ss_dssp TCEEEE
T ss_pred CCceec
Confidence 999998
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=89.36 E-value=0.027 Score=49.92 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.9
Q ss_pred hHHHhccCeEEEeCCCCceeec
Q 007620 548 SLIFLARRFAVLAGPSIPIIGE 569 (595)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~~~ 569 (595)
.+.||++||+|+. |+.+..|+
T Consensus 44 ~~~la~~G~~V~~-~D~~g~g~ 64 (238)
T d1ufoa_ 44 LPGYAERGFLLLA-FDAPRHGE 64 (238)
T ss_dssp STTTGGGTEEEEE-CCCTTSTT
T ss_pred HHHHHHCCCEEEE-ecCCCCCC
Confidence 4689999999999 99887664
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=89.07 E-value=0.21 Score=44.36 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=37.6
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
+|+++||.+|+.... |+ . |.||++| |.+..... +....+.|+++||.|+. +|.|
T Consensus 2 ~f~~~dG~~i~y~~~-------G~-g--~pvvllH--------------G~~~~~~~-~~~~~~~l~~~~~~vi~-~D~~ 55 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW-------GS-G--QPIVFSH--------------GWPLNADS-WESQMIFLAAQGYRVIA-HDRR 55 (273)
T ss_dssp EEECTTSCEEEEEEE-------SC-S--SEEEEEC--------------CTTCCGGG-GHHHHHHHHHTTCEEEE-ECCT
T ss_pred EEEeeCCcEEEEEEE-------CC-C--CeEEEEC--------------CCCCCHHH-HHHHHHHHHhCCCEEEE-Eech
Confidence 689999999987654 22 2 4466665 33221111 11224688899999999 8988
Q ss_pred eeec
Q 007620 566 IIGE 569 (595)
Q Consensus 566 ~~~~ 569 (595)
..|.
T Consensus 56 G~G~ 59 (273)
T d1a8sa_ 56 GHGR 59 (273)
T ss_dssp TSTT
T ss_pred hcCc
Confidence 8775
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=88.06 E-value=0.35 Score=42.57 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=36.9
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
+|++.||.+|+.... |+ . |.||++|+ .+.... .+....+.|+++||.|+. +|.|
T Consensus 2 ~f~~~dG~~l~y~~~-------G~-g--~~vv~lHG--------------~~~~~~-~~~~~~~~l~~~g~~vi~-~D~~ 55 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW-------GS-G--KPVLFSHG--------------WLLDAD-MWEYQMEYLSSRGYRTIA-FDRR 55 (271)
T ss_dssp EEECTTSCEEEEEEE-------SS-S--SEEEEECC--------------TTCCGG-GGHHHHHHHHTTTCEEEE-ECCT
T ss_pred EEEeECCeEEEEEEE-------cC-C--CeEEEECC--------------CCCCHH-HHHHHHHHHHhCCCEEEE-Eecc
Confidence 688899999985543 11 2 45666653 222111 111224688999999999 8888
Q ss_pred eeec
Q 007620 566 IIGE 569 (595)
Q Consensus 566 ~~~~ 569 (595)
..|.
T Consensus 56 G~G~ 59 (271)
T d1va4a_ 56 GFGR 59 (271)
T ss_dssp TSTT
T ss_pred cccc
Confidence 8775
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.87 E-value=0.35 Score=42.98 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=38.5
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEeCCCCc
Q 007620 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (595)
Q Consensus 486 ~~~~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~~~~~~ 565 (595)
.|...||.+|+...+-.++ .. |+||++|+ +|.. ...++.....++++||.|+. +|.|
T Consensus 5 ~~~~~~g~~i~y~~~g~~~-----~~--~~iv~lHG--------------~~g~-~~~~~~~~~~~~~~~~~vi~-~D~~ 61 (290)
T d1mtza_ 5 NYAKVNGIYIYYKLCKAPE-----EK--AKLMTMHG--------------GPGM-SHDYLLSLRDMTKEGITVLF-YDQF 61 (290)
T ss_dssp EEEEETTEEEEEEEECCSS-----CS--EEEEEECC--------------TTTC-CSGGGGGGGGGGGGTEEEEE-ECCT
T ss_pred CeEEECCEEEEEEEcCCCC-----CC--CeEEEECC--------------CCCc-hHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 3445699999877774321 12 77888653 3321 11112234578889999999 9988
Q ss_pred eeec
Q 007620 566 IIGE 569 (595)
Q Consensus 566 ~~~~ 569 (595)
..|.
T Consensus 62 G~G~ 65 (290)
T d1mtza_ 62 GCGR 65 (290)
T ss_dssp TSTT
T ss_pred CCcc
Confidence 8775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=87.21 E-value=2.5 Score=40.02 Aligned_cols=92 Identities=13% Similarity=-0.066 Sum_probs=56.8
Q ss_pred eeeEEEecCCCCCCCCceeeecCCCCCcccceEEccCCCEEEEEEecc-----cccc-----cCCCceEEEEEECCCCc-
Q 007620 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVD-----EEDN-----VSSCKLRVWIADAETGE- 73 (595)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~-----~~~~-----~~~~~~~L~v~d~~~g~- 73 (595)
+.|..-||. +-+..+|..+|........+.+++++..+...... .+++ ..+...-+.++|.++.+
T Consensus 110 ~RVAvIdl~----~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V 185 (459)
T d1fwxa2 110 TRVARVRCD----VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 185 (459)
T ss_dssp TEEEEEETT----TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEE
T ss_pred ceEEEEECc----ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceE
Confidence 455666776 67777888777776677778888877644433221 0000 01223456788998876
Q ss_pred eEecccCCCccccccccceEEecCCcEEEEEec
Q 007620 74 AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (595)
Q Consensus 74 ~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~ 106 (595)
..++.-.. ......+++||++++++..
T Consensus 186 ~~QV~V~g------~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 186 AWQVLVSG------NLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEEEEESS------CCCCEEECSSSSEEEEEES
T ss_pred EEEeeeCC------ChhccccCCCCCEEEEEec
Confidence 34443211 3568899999999888754
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.33 E-value=0.17 Score=43.71 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=38.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCC-CchhHHHhccCeEEEeCCCCceee
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIPIIG 568 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~-~~~~q~la~~GY~Vl~~~~~~~~~ 568 (595)
.||.+|+..-..|.. .+ .. |.||++|+ .+..-..+. ....+.|+++||.|+. +|.+..|
T Consensus 13 v~G~~i~y~~~~~~~-~~--~~--~~vvllHG--------------~~~~~~~w~~~~~~~~la~~gy~via-~D~~G~G 72 (208)
T d1imja_ 13 VQGQALFFREALPGS-GQ--AR--FSVLLLHG--------------IRFSSETWQNLGTLHRLAQAGYRAVA-IDLPGLG 72 (208)
T ss_dssp ETTEEECEEEEECSS-SC--CS--CEEEECCC--------------TTCCHHHHHHHTHHHHHHHTTCEEEE-ECCTTSG
T ss_pred ECCEEEEEEEecCCC-CC--CC--CeEEEECC--------------CCCChhHHhhhHHHHHHHHcCCeEEE-eeccccc
Confidence 599999998888854 22 12 67777653 221100000 0113679999999999 9988877
Q ss_pred c
Q 007620 569 E 569 (595)
Q Consensus 569 ~ 569 (595)
.
T Consensus 73 ~ 73 (208)
T d1imja_ 73 H 73 (208)
T ss_dssp G
T ss_pred C
Confidence 5
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=84.98 E-value=0.23 Score=49.91 Aligned_cols=60 Identities=20% Similarity=0.513 Sum_probs=33.3
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccCeEEEe
Q 007620 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (595)
Q Consensus 489 ~~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~GY~Vl~ 560 (595)
+.|=+.| =++.|.+..+++ ++|||||+|+|.|. .|+...|.........+++.++.+|+.
T Consensus 94 sEDCL~L--nI~~P~~~~~~~--~~PVlv~ihGG~f~--------~g~~~~~~~~~~~~~~~~~~~~vIvVt 153 (534)
T d1llfa_ 94 SEDCLTI--NVVRPPGTKAGA--NLPVMLWIFGGGFE--------IGSPTIFPPAQMVTKSVLMGKPIIHVA 153 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTC--CEEEEEEECCSTTT--------SCCGGGSCCHHHHHHHHHTTCCCEEEE
T ss_pred CCcCCEE--EEEECCCCCCCC--CCeEEEEECCCccc--------cCCCCCCCchhccchhhhccCCeEEEE
Confidence 3454444 456687766655 56999999876442 222222211111112356678999997
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=83.94 E-value=1.4 Score=41.86 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=66.5
Q ss_pred ccceEEc-----cCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecC
Q 007620 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (595)
Q Consensus 33 ~~~~~~S-----PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~~~ 107 (595)
..+|.+| +||++| |+.. +..+.|.++|+++-+..++...+... ....++-.++++..++....
T Consensus 85 ~HHP~~S~TdGtyDGryl-FVND--------kan~RVAvIdl~~fkt~kIi~iPn~~---~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 85 LHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp BCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred cCCCcccccCCccceeEE-EEEc--------CCCceEEEEECcceeeeEEEecCCCC---CCceeecccCCCeEEEEccC
Confidence 4455555 478775 5554 35689999999999988887665421 33455666666654443211
Q ss_pred CCCCCCCccccCCCCeeeecCcccccccccccccccCcCCccceEEeecceEEEEcC-CCC-eeecCCCCeeeeeEECCC
Q 007620 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPD 185 (595)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~-~~~lt~~~~~~~~~~SpD 185 (595)
+... .+ ..+|+. +.+ .. .+ ..-+.++|. +.+ ..++.-+.......+|||
T Consensus 153 e~~v-----P~--------pndg~~-----l~d-------~~--~y--~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~d 203 (459)
T d1fwxa2 153 EDET-----PL--------VNDGTN-----MED-------VA--NY--VNVFTAVDADKWEVAWQVLVSGNLDNCDADYE 203 (459)
T ss_dssp CSCE-----ES--------SCSSSS-----TTC-------GG---E--EEEEEEEETTTTEEEEEEEESSCCCCEEECSS
T ss_pred cccc-----cc--------CCCCcc-----ccc-------hh--hc--ceEEEEEecCCceEEEEeeeCCChhccccCCC
Confidence 1000 00 011110 000 00 01 234557787 343 334443333457899999
Q ss_pred CCeEEEEEccc
Q 007620 186 QKYVLITSMHR 196 (595)
Q Consensus 186 g~~l~~~~~~~ 196 (595)
|+++++++.+.
T Consensus 204 GK~af~TsyNS 214 (459)
T d1fwxa2 204 GKWAFSTSYNS 214 (459)
T ss_dssp SSEEEEEESCT
T ss_pred CCEEEEEeccc
Confidence 99999987654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.03 E-value=14 Score=32.20 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=22.8
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEec
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (595)
....+++|||+ .|++.. ....|.+++.++.-.+.+
T Consensus 25 P~gvavd~dg~--i~VaD~--------~n~rI~v~d~~G~~~~~~ 59 (279)
T d1q7fa_ 25 PSGVAVNAQND--IIVADT--------NNHRIQIFDKEGRFKFQF 59 (279)
T ss_dssp EEEEEECTTCC--EEEEEG--------GGTEEEEECTTSCEEEEE
T ss_pred ccEEEEcCCCC--EEEEEC--------CCCEEEEEeCCCCEEEEe
Confidence 44678999997 356653 346788888764434444
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=82.21 E-value=0.64 Score=44.31 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=40.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEEeccCCccCcccCCcccCCCCcccCCCCchhHHHhccC------eEEEeCCC
Q 007620 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR------FAVLAGPS 563 (595)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~vv~~y~~~~~~~~~~~~~~ggp~~~~~~~~~~~q~la~~G------Y~Vl~~~~ 563 (595)
-||.+||-+-....+-+ . |.||+ +||-|..+..+ ....+.|+..| |-|+. ||
T Consensus 89 i~G~~iHf~h~~~~~~~-----~-~pLlL--------------lHG~P~s~~~w-~~vi~~La~~g~~~~~~f~VIa-PD 146 (394)
T d1qo7a_ 89 IEGLTIHFAALFSERED-----A-VPIAL--------------LHGWPGSFVEF-YPILQLFREEYTPETLPFHLVV-PS 146 (394)
T ss_dssp ETTEEEEEEEECCSCTT-----C-EEEEE--------------ECCSSCCGGGG-HHHHHHHHHHCCTTTCCEEEEE-EC
T ss_pred ECCEEEEEEEEeccCCC-----C-CEEEE--------------eccccccHHHH-HHHHHhhccccCCcccceeeec-cc
Confidence 49999999877654321 1 44555 35666543322 12357999998 99999 99
Q ss_pred CceeecCCC
Q 007620 564 IPIIGEGDK 572 (595)
Q Consensus 564 ~~~~~~~~~ 572 (595)
+|.+|.-++
T Consensus 147 LpG~G~S~~ 155 (394)
T d1qo7a_ 147 LPGYTFSSG 155 (394)
T ss_dssp CTTSTTSCC
T ss_pred ccccCCCCC
Confidence 999996433
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.08 E-value=1.3 Score=39.57 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=37.8
Q ss_pred ccceEEccCCCEEEEEEecccccccCCCceEEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007620 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (595)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspdg~~l~~~~ 105 (595)
+...+|||+|+.||-... + ..|.++|+.+++...-..... ......|+|+|+.|++..
T Consensus 254 v~~l~~sp~~~~lasg~~--------D--g~v~vWD~~~~~~l~~~~~~~-----~~~~~~~s~~~~~l~~a~ 311 (342)
T d1yfqa_ 254 VNSIEFSPRHKFLYTAGS--------D--GIISCWNLQTRKKIKNFAKFN-----EDSVVKIACSDNILCLAT 311 (342)
T ss_dssp EEEEEECTTTCCEEEEET--------T--SCEEEEETTTTEEEEECCCCS-----SSEEEEEEECSSEEEEEE
T ss_pred ceeEEecCCccEEEEECC--------C--CEEEEEECCCCcEEEEecCCC-----CCEEEEEEeCCCEEEEEE
Confidence 456799999998765442 2 456667998876433221111 234678999999888754
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