Citrus Sinensis ID: 007631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLFN
ccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHcccccccEEEccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHccccEEEEEEcccccccHHHHHHccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccEEEcccEEEEEccccccccEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHcc
cccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHcccccccHHHHHHHcccccEEEEcccccccEEEEccHHHHHHHHHHHHccccEEEEEEccHEEEHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHccccccEEEEEccccHHHHHHHHHHcccccEEEEEEEccccHHHHcHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHcHHHHHHHHHcccEEEEccccEEccccccccccEEEEccccccccEHHHHHHHHHcccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHcc
mashvvgyprmgpkRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAgikfipsntfsyydQVLDTtamlgavppryswnggeigFDVYFSMArgnasvpamemTKWFdtnyhyivpelgpdvnfsyASHKAVQEYKEAKALGMETVPVLVGPVSylllskpakgveksFSLLSLIDKIIPVYKEVVAELKAAGatwiqfdeptlvldldshklQAFSDAYSELQSSLSGLNVLIETyfadvpaeTYKILTSLkgvtgfgfdlirgtktldliktefplgkyLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALsgqkdeayfssnaaaqasrkssprvtneavqkpaaalkgsdhrratNVSARLDAQQkklnlpnlptttigsfpqtMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELdidvlvhgepernDMVEYFGEQLSGFAFTVNGwvqsygsrcvkppiiygdvsrpkAMTVFWSSMAQsmtkrpmkgmltgpvtilnwsfvrndqprqginqiqcpvnLRIFKLFN
mashvvgyprmgpkrELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAaaqasrkssprvtneavqkpaaalkgsdhrRATNVSARLdaqqkklnlpnlptttigsfpqtmdlRRVRREFkakkiseddyvktIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQprqginqiqcpvnlrifklfn
MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLFN
****************LKFALESFWDGK**ADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKAL************************************************************************************FKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMA*******MKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLF*
MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLF*
MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYF************************************TNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLFN
****VVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKL**
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MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIFKLFN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query595 2.2.26 [Sep-21-2011]
Q42699 765 5-methyltetrahydropteroyl N/A no 0.968 0.752 0.873 0.0
P93263 765 5-methyltetrahydropteroyl N/A no 0.969 0.754 0.863 0.0
O50008 765 5-methyltetrahydropteroyl yes no 0.969 0.754 0.857 0.0
Q42662 764 5-methyltetrahydropteroyl N/A no 0.966 0.752 0.843 0.0
Q87BY8 758 5-methyltetrahydropteroyl yes no 0.957 0.751 0.504 1e-162
B2I621 758 5-methyltetrahydropteroyl yes no 0.957 0.751 0.504 1e-162
Q6N765 788 5-methyltetrahydropteroyl yes no 0.959 0.724 0.496 1e-161
B3QGC4 788 5-methyltetrahydropteroyl yes no 0.959 0.724 0.496 1e-161
B0U3F5 758 5-methyltetrahydropteroyl yes no 0.957 0.751 0.502 1e-161
Q9PB72 758 5-methyltetrahydropteroyl yes no 0.957 0.751 0.497 1e-160
>sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1 Back     alignment and function desciption
 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/576 (87%), Positives = 544/576 (94%)

Query: 1   MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
           MASH+VGYPRMGPKRELKFALESFWD KSSA++LQ VAADLR+SIW QMADAGIK+IPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMADAGIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
           TFSYYDQVLDT  MLGAVPPRY++ GGEIGFD YFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61  TFSYYDQVLDTATMLGAVPPRYNFAGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
           VPELGP+VNFSYASHKAV EYKEAK LG++TVPVLVGPV++LLLSKPAKGVEK+F LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKELGVDTVPVLVGPVTFLLLSKPAKGVEKTFPLLSL 180

Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
           +DKI+PVYKEV+ ELKAAGA+WIQFDEPTLVLDL+SH+L+AF+ AYSEL+S+LSGLNV++
Sbjct: 181 LDKILPVYKEVIGELKAAGASWIQFDEPTLVLDLESHQLEAFTKAYSELESTLSGLNVIV 240

Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
           ETYFAD+PAETYKILT+LKGVTGFGFDL+RG KTLDLIK  FP GKYLFAGVVDGRNIWA
Sbjct: 241 ETYFADIPAETYKILTALKGVTGFGFDLVRGAKTLDLIKGGFPSGKYLFAGVVDGRNIWA 300

Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
           NDLA+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NE KLD+EIKSWLAFAAQKVVE
Sbjct: 301 NDLAASLSTLQSLEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVE 360

Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
           VNALAKAL+G+KDEA+FS NAAAQASRKSSPRVTN+AVQK AAAL+GSDHRRAT VSARL
Sbjct: 361 VNALAKALAGEKDEAFFSENAAAQASRKSSPRVTNQAVQKAAAALRGSDHRRATTVSARL 420

Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
           DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISEDDYVK IKEEI+ VVKLQEE
Sbjct: 421 DAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKEEISKVVKLQEE 480

Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
           LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPPIIYGDVSRP  MTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPNPMTV 540

Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPR 576
           FWS  AQSMTKRPMKGMLTGPVTILNWSFVRNDQPR
Sbjct: 541 FWSQTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPR 576
Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.
Catharanthus roseus (taxid: 4058)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1 Back     alignment and function description
>sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1 Back     alignment and function description
>sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2 Back     alignment and function description
>sp|Q87BY8|METE_XYLFT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B2I621|METE_XYLF2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M23) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q6N765|METE_RHOPA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B3QGC4|METE_RHOPT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B0U3F5|METE_XYLFM 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M12) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q9PB72|METE_XYLFA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain 9a5c) GN=metE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
151347486 765 methionine synthase [Carica papaya] 0.969 0.754 0.887 0.0
449452654 827 PREDICTED: 5-methyltetrahydropteroyltrig 0.968 0.696 0.888 0.0
255549601 815 5-methyltetrahydropteroyltriglutamate--h 0.969 0.707 0.885 0.0
255569484 765 5-methyltetrahydropteroyltriglutamate--h 0.968 0.752 0.887 0.0
224131686 765 vitamin-b12 independent methionine synth 0.968 0.752 0.890 0.0
224104961 765 vitamin-b12 independent methionine synth 0.968 0.752 0.894 0.0
225439223 765 PREDICTED: 5-methyltetrahydropteroyltrig 0.968 0.752 0.880 0.0
224146039 765 vitamin-b12 independent methionine synth 0.968 0.752 0.876 0.0
449437751 765 PREDICTED: 5-methyltetrahydropteroyltrig 0.968 0.752 0.875 0.0
296084004 804 unnamed protein product [Vitis vinifera] 0.968 0.716 0.885 0.0
>gi|151347486|gb|ABS01352.1| methionine synthase [Carica papaya] Back     alignment and taxonomy information
 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/577 (88%), Positives = 550/577 (95%)

Query: 1   MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
           MASH+VGYPRMGPKRELKFALESFWDGKSSA++LQ VAADLR+SIW QM+DA IK+IPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSDARIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
           TFSYYDQVLDTTAMLGAVPPRY+WNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYH+I
Sbjct: 61  TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120

Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
           VPELGPDV FSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSKPAKGVEK+FSLLSL
Sbjct: 121 VPELGPDVTFSYASHKAVTEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKTFSLLSL 180

Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
           ++KI+PVYKEV++ELKAAGA+WIQFDEPTLVLDLD+HKLQAF+DAYSEL+S+LSGL+VLI
Sbjct: 181 LNKILPVYKEVISELKAAGASWIQFDEPTLVLDLDAHKLQAFTDAYSELESTLSGLSVLI 240

Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
           ETYFADVPAE YK LT LKGVTG+GFDL+RGTKTLDLIK  FP GKYLF+GVVDGRNIWA
Sbjct: 241 ETYFADVPAEAYKTLTGLKGVTGYGFDLVRGTKTLDLIKGGFPKGKYLFSGVVDGRNIWA 300

Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
           NDLASSL+TLQ+L G VGK+ +VVSTSCSLLHTAVDL NETKLD+EIKSWLAFAAQKVVE
Sbjct: 301 NDLASSLSTLQELEGIVGKENLVVSTSCSLLHTAVDLVNETKLDKEIKSWLAFAAQKVVE 360

Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
           VNALA+AL+GQKDEA+FS+NAAAQASRKSSPRVTNEAVQK AAALKGSDHRRATNVSARL
Sbjct: 361 VNALAQALAGQKDEAFFSANAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARL 420

Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
           DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISEDDYVK IK EI  VV LQE+
Sbjct: 421 DAQQKKLNLPVLPTTTIGSFPQTLELRRVRREYKAKKISEDDYVKAIKAEIKKVVALQED 480

Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
           LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRP  MTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTV 540

Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQ 577
           FWSS AQSMT RPMKGMLTGPVTILNWSFVRNDQPR 
Sbjct: 541 FWSSTAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRH 577

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449452654|ref|XP_004144074.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255549601|ref|XP_002515852.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223545007|gb|EEF46521.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255569484|ref|XP_002525709.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223535009|gb|EEF36692.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131686|ref|XP_002328083.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222837598|gb|EEE75963.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104961|ref|XP_002313635.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222850043|gb|EEE87590.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439223|ref|XP_002276438.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146039|ref|XP_002325856.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222862731|gb|EEF00238.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437751|ref|XP_004136654.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] gi|449526387|ref|XP_004170195.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296084004|emb|CBI24392.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
TAIR|locus:2170318 765 ATMS1 "methionine synthesis 1" 0.968 0.752 0.859 4.7e-270
TAIR|locus:2079434 765 MS2 "methionine synthase 2" [A 0.968 0.752 0.847 1.7e-265
TAIR|locus:2147147 812 MS3 "methionine synthase 3" [A 0.968 0.709 0.821 2.8e-256
UNIPROTKB|P65340 759 metE "5-methyltetrahydropteroy 0.951 0.745 0.498 2.4e-140
CGD|CAL0002475 767 MET6 [Candida albicans (taxid: 0.974 0.756 0.490 3.2e-136
UNIPROTKB|P82610 767 MET6 "5-methyltetrahydropteroy 0.974 0.756 0.490 3.2e-136
SGD|S000000893 767 MET6 "Cobalamin-independent me 0.969 0.752 0.470 2.7e-132
TIGR_CMR|CBU_2048 775 CBU_2048 "5-methyltetrahydropt 0.959 0.736 0.470 9.1e-132
UNIPROTKB|P25665 753 metE "cobalamin-independent ho 0.964 0.762 0.465 1.7e-130
UNIPROTKB|G4ML75 766 MGG_06712 "5-methyltetrahydrop 0.973 0.755 0.459 1.7e-130
TAIR|locus:2170318 ATMS1 "methionine synthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2597 (919.2 bits), Expect = 4.7e-270, P = 4.7e-270
 Identities = 495/576 (85%), Positives = 536/576 (93%)

Query:     1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
             MASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSN
Sbjct:     1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60

Query:    61 TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
             TF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct:    61 TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query:   121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
             VPELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL
Sbjct:   121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180

Query:   181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
             + KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+  KLQAF+ AY+EL+S+LSGLNVL+
Sbjct:   181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240

Query:   241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
             ETYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K  FP GKYLFAGVVDGRNIWA
Sbjct:   241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWA 300

Query:   301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
             ND A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSWLAFAAQKVVE
Sbjct:   301 NDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVE 360

Query:   361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
             VNALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARL
Sbjct:   361 VNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARL 420

Query:   421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
             DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI  VV LQEE
Sbjct:   421 DAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEE 480

Query:   481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
             LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKAMTV
Sbjct:   481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTV 540

Query:   541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPR 576
             FWS+MAQSMT RPMKGMLTGPVTILNWSFVRNDQPR
Sbjct:   541 FWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPR 576
GO:0003871 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=ISS;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0009086 "methionine biosynthetic process" evidence=IEA;ISS
GO:0008705 "methionine synthase activity" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0005777 "peroxisome" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2079434 MS2 "methionine synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147147 MS3 "methionine synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P65340 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
CGD|CAL0002475 MET6 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P82610 MET6 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000000893 MET6 "Cobalamin-independent methionine synthase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_2048 CBU_2048 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P25665 metE "cobalamin-independent homocysteine transmethylase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|G4ML75 MGG_06712 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2I621METE_XYLF22, ., 1, ., 1, ., 1, 40.50420.95790.7519yesno
O50008METE_ARATH2, ., 1, ., 1, ., 1, 40.85780.96970.7542yesno
Q42699METE_CATRO2, ., 1, ., 1, ., 1, 40.87320.96800.7529N/Ano
Q93J59METE_STRCO2, ., 1, ., 1, ., 1, 40.50600.95290.7344yesno
Q87BY8METE_XYLFT2, ., 1, ., 1, ., 1, 40.50420.95790.7519yesno
Q42662METE_SOLSC2, ., 1, ., 1, ., 1, 40.84370.96630.7526N/Ano
P93263METE_MESCR2, ., 1, ., 1, ., 1, 40.86300.96970.7542N/Ano
B1VV57METE_STRGG2, ., 1, ., 1, ., 1, 40.50600.95290.7325yesno
B0U3F5METE_XYLFM2, ., 1, ., 1, ., 1, 40.50250.95790.7519yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.1.1.140.991
3rd Layer2.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
PLN02475 766 PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl 0.0
PRK05222 758 PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl 0.0
TIGR01371 750 TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero 0.0
cd03312360 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-i 0.0
pfam08267310 pfam08267, Meth_synt_1, Cobalamin-independent synt 1e-154
pfam01717 324 pfam01717, Meth_synt_2, Cobalamin-independent synt 2e-78
COG0620 330 COG0620, MetE, Methionine synthase II (cobalamin-i 6e-71
cd03311 332 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i 4e-60
PRK04326 330 PRK04326, PRK04326, methionine synthase; Provision 2e-34
cd03310 321 cd03310, CIMS_like, CIMS - Cobalamine-independent 3e-12
cd03310321 cd03310, CIMS_like, CIMS - Cobalamine-independent 7e-10
PRK08575326 PRK08575, PRK08575, 5-methyltetrahydropteroyltrigl 5e-08
PRK09121 339 PRK09121, PRK09121, 5-methyltetrahydropteroyltrigl 1e-07
PRK00957 305 PRK00957, PRK00957, methionine synthase; Provision 1e-06
cd00465 306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 3e-06
COG0620330 COG0620, MetE, Methionine synthase II (cobalamin-i 8e-06
PRK01207 343 PRK01207, PRK01207, methionine synthase; Provision 2e-04
cd03311332 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i 6e-04
cd00465306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 0.001
>gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information 
 Score = 1172 bits (3033), Expect = 0.0
 Identities = 512/577 (88%), Positives = 546/577 (94%), Gaps = 1/577 (0%)

Query: 1   MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
           MASH+VGYPRMGPKRELKFALESFWDGKSSA++LQ VAADLR+SIW QM+ AGIK+IPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
           TFSYYDQVLDTTAMLGAVPPRY W GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61  TFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
           VPELGP+V FSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSKPAKGV+KSF LLSL
Sbjct: 121 VPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVDKSFDLLSL 180

Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
           +DKI+PVYKEV+AELKAAGA+WIQFDEP LV+DL+SHKLQAF  AY+EL+S+LSGLNVL+
Sbjct: 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLV 240

Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIW 299
           ETYFADVPAE YK LTSLKGVT FGFDL+RGTKTLDLIK   FP GKYLFAGVVDGRNIW
Sbjct: 241 ETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIW 300

Query: 300 ANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVV 359
           ANDLA+SL TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD+E+KSWLAFAAQKVV
Sbjct: 301 ANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVV 360

Query: 360 EVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSAR 419
           EV ALAKAL+GQKDEA+FS+NAAAQASR+SSPRVTNEAVQK AAALKGSDHRRAT VSAR
Sbjct: 361 EVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNEAVQKAAAALKGSDHRRATPVSAR 420

Query: 420 LDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQE 479
           LDAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKKISE+DYVK IKEEI  VVKLQE
Sbjct: 421 LDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQE 480

Query: 480 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMT 539
           ELDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPPIIYGDVSRPKAMT
Sbjct: 481 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMT 540

Query: 540 VFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPR 576
           VFWSS+AQSMTKRPMKGMLTGPVTILNWSFVRNDQPR
Sbjct: 541 VFWSSVAQSMTKRPMKGMLTGPVTILNWSFVRNDQPR 577

Length = 766
>gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|239428 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>gnl|CDD|219768 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic domain Back     alignment and domain information
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>gnl|CDD|236299 PRK08575, PRK08575, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|181659 PRK09121, PRK09121, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|100814 PRK01207, PRK01207, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 595
KOG2263 765 consensus Methionine synthase II (cobalamin-indepe 100.0
PLN02475 766 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK05222 758 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
TIGR01371 750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
cd03312360 CIMS_N_terminal_like CIMS - Cobalamine-independent 100.0
PF08267310 Meth_synt_1: Cobalamin-independent synthase, N-ter 100.0
PRK08575326 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
TIGR01371750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
PRK09121339 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK04326330 methionine synthase; Provisional 100.0
cd03310321 CIMS_like CIMS - Cobalamine-independent methonine 100.0
PRK05222758 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06520368 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06233372 hypothetical protein; Provisional 100.0
cd03311332 CIMS_C_terminal_like CIMS - Cobalamine-independent 100.0
PLN02475766 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
COG0620330 MetE Methionine synthase II (cobalamin-independent 100.0
PRK01207343 methionine synthase; Provisional 100.0
PF01717324 Meth_synt_2: Cobalamin-independent synthase, Catal 100.0
COG0620 330 MetE Methionine synthase II (cobalamin-independent 100.0
PRK00957305 methionine synthase; Provisional 100.0
PRK01207 343 methionine synthase; Provisional 100.0
PRK06438292 hypothetical protein; Provisional 100.0
PRK09121 339 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06052344 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PF01717 324 Meth_synt_2: Cobalamin-independent synthase, Catal 100.0
PRK06233 372 hypothetical protein; Provisional 99.98
PRK06520 368 5-methyltetrahydropteroyltriglutamate--homocystein 99.98
PRK08575 326 5-methyltetrahydropteroyltriglutamate--homocystein 99.97
cd03311 332 CIMS_C_terminal_like CIMS - Cobalamine-independent 99.97
PRK04326 330 methionine synthase; Provisional 99.96
KOG2263765 consensus Methionine synthase II (cobalamin-indepe 99.96
PRK00957 305 methionine synthase; Provisional 99.92
PRK06438 292 hypothetical protein; Provisional 99.9
cd03312 360 CIMS_N_terminal_like CIMS - Cobalamine-independent 99.9
cd03310 321 CIMS_like CIMS - Cobalamine-independent methonine 99.82
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 99.81
PRK06052 344 5-methyltetrahydropteroyltriglutamate--homocystein 99.66
PF08267 310 Meth_synt_1: Cobalamin-independent synthase, N-ter 99.37
cd03465330 URO-D_like The URO-D _like protein superfamily inc 98.98
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 98.68
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 98.68
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 98.28
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 98.25
PLN02433345 uroporphyrinogen decarboxylase 98.25
PRK00115346 hemE uroporphyrinogen decarboxylase; Validated 98.12
cd00465 306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 98.11
TIGR01464338 hemE uroporphyrinogen decarboxylase. This model re 98.05
cd00717335 URO-D Uroporphyrinogen decarboxylase (URO-D) is a 98.01
cd03309321 CmuC_like CmuC_like. Proteins similar to the putat 97.71
COG0407352 HemE Uroporphyrinogen-III decarboxylase [Coenzyme 96.6
cd03308378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 95.69
PF02581180 TMP-TENI: Thiamine monophosphate synthase/TENI; In 92.79
PRK03512211 thiamine-phosphate pyrophosphorylase; Provisional 88.68
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 87.21
PRK06512221 thiamine-phosphate pyrophosphorylase; Provisional 84.25
PRK02615347 thiamine-phosphate pyrophosphorylase; Provisional 83.4
PRK07695201 transcriptional regulator TenI; Provisional 83.22
PRK08999312 hypothetical protein; Provisional 83.17
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 82.72
TIGR00693196 thiE thiamine-phosphate pyrophosphorylase. This mo 80.92
KOG2872359 consensus Uroporphyrinogen decarboxylase [Coenzyme 80.75
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6e-167  Score=1289.06  Aligned_cols=588  Identities=83%  Similarity=1.244  Sum_probs=571.3

Q ss_pred             CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCC
Q 007631            1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP   80 (595)
Q Consensus         1 ~~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~   80 (595)
                      |.+|++||||||++||||+|+|+||.|+++.++|.++++++|.++|+.|+.+|+|+||+|+||+||+|||++.|||+||.
T Consensus         2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~   81 (765)
T KOG2263|consen    2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP   81 (765)
T ss_pred             cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHH
Q 007631           81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS  160 (595)
Q Consensus        81 rf~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T  160 (595)
                      ||+..-+.+.+|.||+|+||..+++|+||+||||+||||++||+..++.|++.+++.++||++||++|+.++|||+||+|
T Consensus        82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs  161 (765)
T KOG2263|consen   82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS  161 (765)
T ss_pred             ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence            99877677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEE
Q 007631          161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI  240 (595)
Q Consensus       161 ~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l  240 (595)
                      ||+|+|..++...++++.+|+++|+|+|.|+|.+|.+||++|||||||+|++|++.+.++++..||..+......++++|
T Consensus       162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l  241 (765)
T KOG2263|consen  162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL  241 (765)
T ss_pred             hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence            99999976654335789999999999999999999999999999999999999999999999999999986544579999


Q ss_pred             EeccCCCCcccHHHHhcCCC-ccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCC
Q 007631          241 ETYFADVPAETYKILTSLKG-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK  319 (595)
Q Consensus       241 ~tyfg~~~~~v~~~l~~l~p-vd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~  319 (595)
                      +||||++-.+.++.|.+| | |.++|+|+++++++++.++..||.+|.|++|||||||||.+|+......|+++...+|.
T Consensus       242 ~TYF~~v~~~a~~~lk~L-~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~  320 (765)
T KOG2263|consen  242 ATYFADVPAEAYKTLKSL-KGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGK  320 (765)
T ss_pred             hhhhccCCHHHHHHHhCC-cceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhcc
Confidence            999999876669999999 7 99999999999999999988899999999999999999999999999999999999999


Q ss_pred             CcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 007631          320 DKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQ  399 (595)
Q Consensus       320 ~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  399 (595)
                      |++.||+||||+|+|+|+.+|++|++|||+|||||.|||.|++.|++++++..+.+.+.+|..+.++|+.|++++|++||
T Consensus       321 dkvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~  400 (765)
T KOG2263|consen  321 DKVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQ  400 (765)
T ss_pred             ceEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHH
Confidence            99999999999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             hHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 007631          400 KPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQE  479 (595)
Q Consensus       400 ~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~~ai~~~V~~Qe  479 (595)
                      +|++++++.|.+|.+||+.|..+||++||||+||||||||||||.+||..|++|++|.||+++|.++++++|.++|+.||
T Consensus       401 ~r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQE  480 (765)
T KOG2263|consen  401 KRVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQE  480 (765)
T ss_pred             HHHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHhccCCCceeeec
Q 007631          480 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLT  559 (595)
Q Consensus       480 ~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~~t~k~vK~~lp  559 (595)
                      ++||||++|||.+|||||+||+|+|+||.||.||||||||+||+|||||+|+|+|+++|+|.|..|+|++|.+|||+|||
T Consensus       481 elgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLT  560 (765)
T KOG2263|consen  481 ELGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLT  560 (765)
T ss_pred             HhCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhhcCCCCCCChhHHHHHHHHHHHh
Q 007631          560 GPVTILNWSFVRNDQPRQGINQIQCPVNLRI  590 (595)
Q Consensus       560 gP~ti~~~s~~~~y~~~~~~~~~diA~a~r~  590 (595)
                      ||+||++|||+|+++++. +.|+|||+|+|+
T Consensus       561 gPvTiL~WSF~R~D~~~~-~~~~QiALaikD  590 (765)
T KOG2263|consen  561 GPVTILNWSFVRNDQPRH-ETCYQIALAIKD  590 (765)
T ss_pred             CceEEEEeccccCCcchh-HHHHHHHHHHHH
Confidence            999999999999999999 999999999986

>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] Back     alignment and domain information
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06233 hypothetical protein; Provisional Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01207 methionine synthase; Provisional Back     alignment and domain information
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 Back     alignment and domain information
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>PRK01207 methionine synthase; Provisional Back     alignment and domain information
>PRK06438 hypothetical protein; Provisional Back     alignment and domain information
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 Back     alignment and domain information
>PRK06233 hypothetical protein; Provisional Back     alignment and domain information
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>PRK06438 hypothetical protein; Provisional Back     alignment and domain information
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>PLN02433 uroporphyrinogen decarboxylase Back     alignment and domain information
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>TIGR01464 hemE uroporphyrinogen decarboxylase Back     alignment and domain information
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information
>cd03309 CmuC_like CmuC_like Back     alignment and domain information
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 Back     alignment and domain information
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07695 transcriptional regulator TenI; Provisional Back     alignment and domain information
>PRK08999 hypothetical protein; Provisional Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase Back     alignment and domain information
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1u1h_A 765 A. Thaliana Cobalamine Independent Methionine Synth 0.0
3pph_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-150
3ppf_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-150
3ppc_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-150
2nq5_A 755 Crystal Structure Of Methyltransferase From Strepto 1e-121
3l7r_A 779 Crystal Structure Of Mete From Streptococcus Mutans 1e-120
1t7l_A 766 Crystal Structure Of Cobalamin-Independent Methioni 1e-110
1xr2_A 766 Crystal Structure Of Oxidized T. Maritima Cobalamin 1e-110
1xdj_A 766 Crystal Structure Of T. Maritima Cobalamin-Independ 1e-102
1xpg_A 765 Crystal Structure Of T. Maritima Cobalamin-Independ 1e-102
3rpd_A 357 The Structure Of A B12-Independent Methionine Synth 3e-07
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 Back     alignment and structure 
Iteration: 1

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/576 (83%), Positives = 521/576 (90%)
Query: 2   ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNT 61
           ASH+VGYPR GPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW Q + AG KFIPSNT
Sbjct: 2   ASHIVGYPRXGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQXSAAGTKFIPSNT 61
Query: 62  FSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIV 121
           F++YDQVLDTTA LGAVPPRY + GGEIG DVYFS ARGNASVPA E TKWFDTNYHYIV
Sbjct: 62  FAHYDQVLDTTAXLGAVPPRYGYTGGEIGLDVYFSXARGNASVPAXEXTKWFDTNYHYIV 121
Query: 122 PELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLI 181
           PELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL+
Sbjct: 122 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 181
Query: 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241
            KI+P+YKEV+ ELKAAGATWIQ DEP LV DL+  KLQAF+ AY+EL+S+LSGLNVL+E
Sbjct: 182 PKILPIYKEVITELKAAGATWIQLDEPVLVXDLEGQKLQAFTGAYAELESTLSGLNVLVE 241
Query: 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAN 301
           TYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K  FP GKYLFAGVVDGRNIWAN
Sbjct: 242 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWAN 301
Query: 302 DLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361
           D A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSW AFAAQKVVEV
Sbjct: 302 DFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWXAFAAQKVVEV 361
Query: 362 NALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARLD 421
           NALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARLD
Sbjct: 362 NALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARLD 421
Query: 422 AQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEEL 481
           AQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI  VV LQEEL
Sbjct: 422 AQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEEL 481
Query: 482 DIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVF 541
           DIDVLVHGEPERND VEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKA TVF
Sbjct: 482 DIDVLVHGEPERNDXVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAXTVF 541
Query: 542 WSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQ 577
           WS+ AQS T RP KG LTGPVTILNWSFVRNDQPR 
Sbjct: 542 WSAXAQSXTSRPXKGXLTGPVTILNWSFVRNDQPRH 577
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 Back     alignment and structure
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 Back     alignment and structure
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 Back     alignment and structure
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 Back     alignment and structure
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 Back     alignment and structure
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 Back     alignment and structure
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 Back     alignment and structure
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 Back     alignment and structure
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 Back     alignment and structure
>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase From Shewanella Sp. W3-18-1 In Complex With Selenomethionine. Length = 357 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 0.0
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 3e-05
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 0.0
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 2e-05
1t7l_A 766 5-methyltetrahydropteroyltriglutamate-- homocystei 0.0
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 3e-06
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 0.0
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 2e-12
3rpd_A 357 Methionine synthase (B12-independent); structural 3e-92
3rpd_A357 Methionine synthase (B12-independent); structural 1e-07
1ypx_A 375 Putative vitamin-B12 independent methionine synth 5e-47
1ypx_A375 Putative vitamin-B12 independent methionine synth 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
 Score =  837 bits (2164), Expect = 0.0
 Identities = 494/577 (85%), Positives = 536/577 (92%)

Query: 1   MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSN 60
           MASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
           TF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYI
Sbjct: 61  TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query: 121 VPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSL 180
           VPELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180

Query: 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240
           + KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+  KLQAF+ AY+EL+S+LSGLNVL+
Sbjct: 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240

Query: 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWA 300
           ETYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K  FP GKYLFAGVVDGRNIWA
Sbjct: 241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWA 300

Query: 301 NDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVE 360
           ND A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSW+AFAAQKVVE
Sbjct: 301 NDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVE 360

Query: 361 VNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKPAAALKGSDHRRATNVSARL 420
           VNALAKAL+GQKDEA FS+NAAA ASR+SSPRVTNE VQK AAALKGSDHRRATNVSARL
Sbjct: 361 VNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARL 420

Query: 421 DAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEE 480
           DAQQKKLNLP LPTTTIGSFPQT++LRRVRRE+KAKK+SE+DYVK IKEEI  VV LQEE
Sbjct: 421 DAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVVDLQEE 480

Query: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTV 540
           LDIDVLVHGEPERNDMVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKAMTV
Sbjct: 481 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTV 540

Query: 541 FWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRQ 577
           FWS+MAQSMT RPMKGMLTGPVTILNWSFVRNDQPR 
Sbjct: 541 FWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRH 577
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 100.0
1t7l_A 766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
3rpd_A357 Methionine synthase (B12-independent); structural 100.0
1ypx_A375 Putative vitamin-B12 independent methionine synth 100.0
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 100.0
3rpd_A 357 Methionine synthase (B12-independent); structural 100.0
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1ypx_A 375 Putative vitamin-B12 independent methionine synth 100.0
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 99.1
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 99.07
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 98.47
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 98.41
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 98.32
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 97.65
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 97.44
3nl6_A 540 Thiamine biosynthetic bifunctional enzyme; thiamin 86.06
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 85.78
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
Probab=100.00  E-value=2.3e-164  Score=1393.04  Aligned_cols=584  Identities=50%  Similarity=0.800  Sum_probs=559.0

Q ss_pred             ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCc
Q 007631            2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR   81 (595)
Q Consensus         2 ~t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~r   81 (595)
                      +||++||||||++||||+|+|+||+|+||+++|.++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+|
T Consensus        25 ~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~r  104 (789)
T 3ppg_A           25 QSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPER  104 (789)
T ss_dssp             CEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred             HHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccchhhhhhcCCC----------CCCccccceecccCceeecceecCCCccccC---CcccHHHHHHHHHcC
Q 007631           82 YSWNGGEIGFDVYFSMARGNA----------SVPAMEMTKWFDTNYHYIVPELGPDVNFSYA---SHKAVQEYKEAKALG  148 (595)
Q Consensus        82 f~~~~~~~~l~~yFa~aRG~~----------~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~---~~~~~~~~~~a~~~g  148 (595)
                      |+... ..+|++||+||||..          +++|+||||||||||||+||||.+++.|+++   .++++++|++|+++|
T Consensus       105 ~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~G  183 (789)
T 3ppg_A          105 YTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALG  183 (789)
T ss_dssp             GGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHTT
T ss_pred             hcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHcC
Confidence            98532 346999999999965          5779999999999999999999999999999   899999999999999


Q ss_pred             CCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHH
Q 007631          149 METVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSE  228 (595)
Q Consensus       149 ~~~K~vl~GP~T~l~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~  228 (595)
                      +.+||||+||+|||+|||..++- .++++.+++++|+++|.++|++|.++||+|||||||+|++|+++++++++.++|+.
T Consensus       184 ~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~~  262 (789)
T 3ppg_A          184 VQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYDA  262 (789)
T ss_dssp             CCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHHH
T ss_pred             CCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHHH
Confidence            99999999999999999931210 13688899999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEeccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHH
Q 007631          229 LQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLT  308 (595)
Q Consensus       229 l~~~~~~~~i~l~tyfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~  308 (595)
                      |.+. +.++|+|+||||+++++ ++.|.++ ||+||||||++++++++.+...||++|.|++|||||||||++|++++++
T Consensus       263 L~~~-~~~kill~TYFg~~~~~-l~~l~~l-pV~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l~  339 (789)
T 3ppg_A          263 LVGA-DVPELILTTYFGDVRPN-LKAIENL-PVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASA  339 (789)
T ss_dssp             HCST-TSCEEEEECCSSCCGGG-HHHHTTC-CCSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHHH
T ss_pred             HhhC-CCCCEEEECCCCCHHHH-HHHHHcC-CCcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHHH
Confidence            9763 34799999999999988 9999999 9999999999988899999878999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 007631          309 TLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRK  388 (595)
Q Consensus       309 ~i~~~~~~~~~~rl~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~  388 (595)
                      +|+++.+.+|.++|||||||||+|||+|++.|++||+++++|||||+|||.||+.|++++.+++..+++.+|.+++++|+
T Consensus       340 ~l~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~  419 (789)
T 3ppg_A          340 VVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARS  419 (789)
T ss_dssp             HHHHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh
Confidence            99999998998999999999999999999999999999999999999999999999999987556778999999999999


Q ss_pred             cCCCCCCHHHHhHHhhCcCCCcccCCchHHHHHHHHhhCCCCCCcccccCCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007631          389 SSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIK  468 (595)
Q Consensus       389 ~~~~~~~~~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~VGSfPrp~~l~~ar~~~~~g~i~~~e~~~~~~  468 (595)
                      .|++++|++||+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||+||+++|++|++|+||.++|+++++
T Consensus       420 ~~~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~is~~el~~~~~  499 (789)
T 3ppg_A          420 ESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFIN  499 (789)
T ss_dssp             TCSSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCEeecCcccccchhHHHhhcccCceeeecceeeecCCcccCCcEEEeeCCCCCCCcHHHHHHHHh
Q 007631          469 EEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQS  548 (595)
Q Consensus       469 ~ai~~~V~~Qe~~GldvitdGE~~R~d~~~yF~e~l~G~~~~~~g~v~~yg~~~~~~pii~g~I~~~~~~~~~~~~~aq~  548 (595)
                      ++|+++|++|+++||||||||||+|+|||+||+++|+||+++.+||||+||++|+++|+|+|+|++++||+++|++|+|+
T Consensus       500 ~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g~r~~~~p~i~G~V~~~~p~~v~~~~~~qs  579 (789)
T 3ppg_A          500 KEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQS  579 (789)
T ss_dssp             HHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecCCccccCCeeeccCCCCCCCcHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeeeccHHHHHhhhcCCCCCCChhHHHHHHHHHHHhh
Q 007631          549 MTKRPMKGMLTGPVTILNWSFVRNDQPRQGINQIQCPVNLRIF  591 (595)
Q Consensus       549 ~t~k~vK~~lpgP~ti~~~s~~~~y~~~~~~~~~diA~a~r~~  591 (595)
                      +|++|+|+|||||+||+.|+++++|.+++ +++.|||.|||+.
T Consensus       580 ~t~~pvK~~L~gP~ti~~~s~~r~~~~~e-e~~~dlA~A~r~E  621 (789)
T 3ppg_A          580 ITSKPMKGMLTGPVTILRWSFPRDDVSGK-IQALQLGLALRDE  621 (789)
T ss_dssp             TCSSCBEEEEECHHHHHHTSBCCSSSCHH-HHHHHHHHHHHHH
T ss_pred             hccCCCceeccchHhHhhhhccccCCCHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999 9999999999974
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 595
d1u1ha1394 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu 1e-160
d1u1ha1 394 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu 1e-28
d1u1ha2 365 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig 8e-66
d1u1ha2365 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig 4e-34
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  462 bits (1189), Expect = e-160
 Identities = 328/394 (83%), Positives = 363/394 (92%)

Query: 2   ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNT 61
           ASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSNT
Sbjct: 1   ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNT 60

Query: 62  FSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIV 121
           F++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYHYIV
Sbjct: 61  FAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIV 120

Query: 122 PELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLI 181
           PELGP+VNFSYASHKAV EYKEAKALG++TVPVLVGPVSYLLLSK AKGV+KSF LLSL+
Sbjct: 121 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 180

Query: 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241
            KI+P+YKEV+ ELKAAGATWIQ DEP LV+DL+  KLQAF+ AY+EL+S+LSGLNVL+E
Sbjct: 181 PKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240

Query: 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAN 301
           TYFAD+PAE YK LTSLKGVT FGFDL+RGTKTLDL+K  FP GKYLFAGVVDGRNIWAN
Sbjct: 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWAN 300

Query: 302 DLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361
           D A+SL+TLQ L G VGKDK+VVSTSCSLLHTAVDL NETKLD EIKSW+AFAAQKVVEV
Sbjct: 301 DFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEV 360

Query: 362 NALAKALSGQKDEAYFSSNAAAQASRKSSPRVTN 395
           NALAKAL+GQKDEA FS+NAAA ASR+SSPRVTN
Sbjct: 361 NALAKALAGQKDEALFSANAAALASRRSSPRVTN 394
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 Back     information, alignment and structure
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 Back     information, alignment and structure
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
d1u1ha1394 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1u1ha2365 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1u1ha2 365 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1u1ha1 394 5-methyltetrahydropteroyltriglutamate--homocystein 99.69
d1j93a_343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 96.99
d1r3sa_356 Uroporphyrinogen decarboxylase, UROD {Human (Homo 96.88
d1xi3a_206 Thiamin phosphate synthase {Archaeon (Pyrococcus f 86.66
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-109  Score=885.99  Aligned_cols=393  Identities=83%  Similarity=1.282  Sum_probs=368.0

Q ss_pred             eeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcccchhhhhHHHhhCCCCCcc
Q 007631            3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY   82 (595)
Q Consensus         3 t~v~GyPRig~~reLK~A~e~yw~g~i~~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~rf   82 (595)
                      |||+||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||++++||+||+||
T Consensus         2 ~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~Rf   81 (394)
T d1u1ha1           2 SHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRY   81 (394)
T ss_dssp             BBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGGG
T ss_pred             CCcCcCCCCCCchHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeccCCccchHHHHHHHHHcCCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccchhhhhhcCCCCCCccccceecccCceeecceecCCCccccCCcccHHHHHHHHHcCCCCceEeehHHHHh
Q 007631           83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYL  162 (595)
Q Consensus        83 ~~~~~~~~l~~yFa~aRG~~~~~a~~mtkwfdtNyhY~vPei~~~~~f~l~~~~~~~~~~~a~~~g~~~K~vl~GP~T~l  162 (595)
                      +...+..++++||+|+||..++.+++|||||||||||+|||+.+++.|++..++++++|++|+++|+++||||+||+||+
T Consensus        82 ~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~l  161 (394)
T d1u1ha1          82 GYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYL  161 (394)
T ss_dssp             CCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHHH
T ss_pred             ccccccccHHHHHHHHhcCCcccccccccccCCCCCccCCccCCCccccccchhHHHHHHHHhhcCCccccccCCHHHHH
Confidence            86655557999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccccCCChHHHHHHHHHHHHHHcCCCCCcEEEEe
Q 007631          163 LLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET  242 (595)
Q Consensus       163 ~lsk~~~~y~~~~d~~~ll~~L~~aY~~~l~~L~~aG~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~t  242 (595)
                      +|++...+...++++.+++++|+++|+++|++|+++||+|||||||+|++++++++++++.++|+.|.+..++++++|+|
T Consensus       162 ~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~t  241 (394)
T d1u1ha1         162 LLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVET  241 (394)
T ss_dssp             HTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEEC
T ss_pred             HHhcccCCCccccCHHHHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHHHHHHHHHHHHHHHhhcCCCCceEEe
Confidence            99985433222468889999999999999999999999999999999999999999999999999998776668999999


Q ss_pred             ccCCCCcccHHHHhcCCCccEEEEEeecCCCChhhHhhhCCCCcEEEEeEeeCCCCCCCCHHHHHHHHHHHHhhcCCCcE
Q 007631          243 YFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKV  322 (595)
Q Consensus       243 yfg~~~~~v~~~l~~l~pvd~i~lD~~~~~~~l~~l~~~~p~~k~l~lGVVdgrn~w~ed~~~~~~~i~~~~~~~~~~rl  322 (595)
                      |||++..+.++.|..+-+||++||||++++.++..+..++|++|.|++|||||||+|+||+++++++|+++.+++|++||
T Consensus       242 yfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~erl  321 (394)
T d1u1ha1         242 YFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKL  321 (394)
T ss_dssp             CSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSCE
T ss_pred             ccCCCchhhHHHHhhcCCCCeeEEEeecCccchHHHHHhCCcccEEEeeeEecCCCCcCCHHHHHHHHHHHHHhCCcccE
Confidence            99998643377777650599999999998888777766799999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcccccccccccCCcHHHHhhhhhHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhcCCCCCC
Q 007631          323 VVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTN  395 (595)
Q Consensus       323 ~vspsCgL~h~P~~~~~E~~l~~~~~~~laFA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (595)
                      ||||||||+|||+|++.|++||+++|+|||||+|||+||++|+++|+++....++++|++++++|++|+++||
T Consensus       322 ~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n  394 (394)
T d1u1ha1         322 VVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN  394 (394)
T ss_dssp             EEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred             EEeCCCCCcCCCCcCccccCCCHHHHhhhchHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999875556789999999999999999997
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Back     information, alignment and structure