Citrus Sinensis ID: 007632

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----

MAQVMNMAVDSLDRRRKDKSSAGDDNGNGNGNDNEDNIDNNNNNSAPQSSPPPPPPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMPRERDRDYKRRSTVSPPPPPLPYRDRRHSPPPRRSPPYKRSRRDDGGYEPRRGSPRGGFGPDRRFGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPV

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

ccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

MAQVMNMAVDSldrrrkdkssagddngngngndnednidnnnnnsapqssppppppparrrerdsrerrddrdldrpppnrrgpdyydrnrsppppmprerdrdykrrstvsppppplpyrdrrhsppprrsppykrsrrddggyeprrgsprggfgpdrrfgydytggyeremggrpgygderphgrfagrssggyqsgpsewdssrggygdasntgstqrEGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFfdahkdeewlkdkyhptnLVAVIERRNDLARKVAKDFLLDLQsgtldlgpsvnasssnklgqtsepnsdddvdnggkrrrhgrgpaketdllsaapkahpisseprrIQVDIEQAQALVRKLdsekgitenilcgsdndkmnrekshgstgpviIIRGltsvkglegvELLDTLITYLWRIHgvdyygmvetseakglrhvraegkssditnngAEWEKKLDFRWQerlrsqdpleiMTAKDKIDAAAVDALDPFVRKirdekygwkygcgakgctklFHAAEFVHKHLKLKHPELVIELTSKVREELYFQnymndpdapggtpvmqqpmpv

MAQVMNMAVdsldrrrkdkssagddngngngndNEDNIDNNNnnsapqssppppppparrrerdsrerrddrdldrpppnrrgpdyydrnrsppppmprerdrdykrrstvsppppplpyrdrrhsppprrsppykrsrrddggyeprrgsprggfgpdrrfGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDeewlkdkyhptnLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNAsssnklgqtsepnsdddvdnggkrrrhgrgpaketdllsaapkahpisseprriQVDIEQAQALVrkldsekgitenilcgsdndkmnrekshgstgpviiIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGlrhvraegkssditnngaewekKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMndpdapggtpvmqqpmpv

MAQVMNMAVDSLDRRRKDKSsagddngngngndnednidnnnnnsapqssppppppparrrerdsrerrddrdldrpppnrrgpdyydrnrsppppmprerdrdYKRRSTVSppppplpyrdrrhsppprrsppykrsrrddGGYEprrgsprggfgpdrrfgYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTakdkidaaavdaldPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPV

***********************************************************************************************************************************************************************************************************************************YKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSG***************************************************************************************IL*****************GPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS**********************EWEKKLDFRWQERLR***PLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYM******************

*****************************************************************************************************************************************************************************************************************************************************RRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLV**********RKVAKDFLLDLQSGTL***************************************************AHPISSEPRRIQVDIEQAQALVRKLDSEKGITENIL*********************************GVELLDTLITYLWRIHGVDYYGMVETSEAKG*******************WEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDP***************

*************************NGNGNGNDNEDNIDNNNN*******************************DRPPPNRRGPDYYDRNRSP*********************PPPLPYR******************************PRGGFGPDRRFGYDYTGGYEREMGGRPGYGDERPHGRFAG*****************************QREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNA*********************************ETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPV

**Q*************************************************************************************************************************************************RGSPRGGFGPDRRFGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQS***********************EGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLG*****************************************************SEPRRIQVDIEQAQALVRKLDSEKGITENILCG*************STGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKS***TNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPD**************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		595	2.2.26 [Sep-21-2011]
Q9ZVD0		720	Serrate RNA effector mole	yes	no	0.835	0.690	0.743	0.0
B4LIK8		963	Serrate RNA effector mole	N/A	no	0.294	0.181	0.295	2e-13
Q17FR9		937	Serrate RNA effector mole	N/A	no	0.336	0.213	0.301	7e-13
B3MJ69		948	Serrate RNA effector mole	N/A	no	0.359	0.225	0.265	8e-13
B3N3F7		947	Serrate RNA effector mole	N/A	no	0.255	0.160	0.296	1e-12
Q28WQ8		951	Serrate RNA effector mole	yes	no	0.295	0.185	0.308	1e-12
B4H732		951	Serrate RNA effector mole	N/A	no	0.295	0.185	0.308	1e-12
Q5TUF1		967	Serrate RNA effector mole	yes	no	0.336	0.206	0.316	1e-12
B4QCR6		947	Serrate RNA effector mole	N/A	no	0.280	0.176	0.276	2e-12
Q9V9K7		943	Serrate RNA effector mole	yes	no	0.284	0.179	0.294	2e-12

>sp\|Q9ZVD0\|SRRT_ARATH Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2	Back alignment and function desciption

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/523 (74%), Positives = 438/523 (83%), Gaps = 26/523 (4%)

Query: 74  LDRPPPNRRGPDYYDRNRSPPPPMPRERDRDYKRRSTVSPPPPPLPYRDRRHSPPPRRSP 133
           ++RPPPNRR     +R+RSP PP PR   RDYKRR ++SPP    PYRDRRHSPP RRSP
Sbjct: 63  IERPPPNRR-----ERDRSPLPP-PR---RDYKRRPSLSPP---PPYRDRRHSPPQRRSP 110

Query: 134 PYKRSRRDDGGYEPRRGSPRGGFGP-DRRFGYDYTGGYEREMGGRPGYGDERPHGRFAGR 192
           P KR RRDD GY+ RRGSPRGG+GP DRRFGYD+ GGY+REMGGRPGYGDERPHGRF GR
Sbjct: 111 PQKRYRRDDNGYDGRRGSPRGGYGPPDRRFGYDHGGGYDREMGGRPGYGDERPHGRFMGR 170

Query: 193 SSGGYQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYK 252
               YQ    +W+  RGGYGDASN+G+ QR+GLMSYKQFIQELEDDILP+EAERRYQEYK
Sbjct: 171 ----YQ----DWEGGRGGYGDASNSGNPQRDGLMSYKQFIQELEDDILPSEAERRYQEYK 222

Query: 253 SEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLG 312
           SEYI+TQKR FF+ HK+E+WLK+KYHPTNL++VIERRNDLA+KVAKDFLLDLQSGTLDLG
Sbjct: 223 SEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSVIERRNDLAQKVAKDFLLDLQSGTLDLG 282

Query: 313 PSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQ 372
           P+V A   NK G+TSEPNS+D+    GKR+RHG G AKE +LLSAAPKA   +S+P+RI 
Sbjct: 283 PAVTA--LNKSGRTSEPNSEDEAAGVGKRKRHGMGGAKENELLSAAPKAPSFTSDPKRIL 340

Query: 373 VDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSH-GSTGPVIIIRGLTSVKGLEGV 431
            D+EQ QALVRKLDSEK I EN+L GS+ +K  REK H GSTGPV+IIRGLTSVKGLEGV
Sbjct: 341 TDVEQTQALVRKLDSEKKIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGV 400

Query: 432 ELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQER 491
           ELLDTL+TYLWR+HG+DYYG VET+EAKGLRHVRAEGK SD    G E E K D  WQER
Sbjct: 401 ELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHVRAEGKVSDA--KGDENESKFDSHWQER 458

Query: 492 LRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKH 551
           L+ QDPLE+M AK+KIDAAA +ALDP VRKIRDEKYGWKYGCGAKGCTKLFHAAEFV+KH
Sbjct: 459 LKGQDPLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKH 518

Query: 552 LKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMP 594
           LKLKH ELV ELT+KVREELYFQNYMNDP+APGG P  QQ  P
Sbjct: 519 LKLKHTELVTELTTKVREELYFQNYMNDPNAPGGQPATQQSGP 561

Acts as a mediator between the cap-binding complex (CBC) and both the pre-mRNA splicing and primary microRNAs (miRNAs) processing machinery. Required for proper processing of primary miRNAs to miRNAs, thereby playing a role in RNA-mediated gene silencing (RNAi) by miRNAs. Does not participate in sense post-transcriptional gene silencing. Acts as a regulator of meristem activity and adaxial leaf fate via the miRNA gene-silencing pathway by regulating the expression of PHB and by limiting the competence of shoot tissue to respond to KNOX expression. Its function is however not limited to miRNA-mediated repression of leaf polarity genes, but rather acts as a general regulator of primary microRNAs processing. Also critical for the accumulation of the trans-acting small interfering RNA (ta-siRNA). Required for pre-mRNA splicing.
Arabidopsis thaliana (taxid: 3702)

>sp\|B4LIK8\|SRRT_DROVI Serrate RNA effector molecule homolog OS=Drosophila virilis GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|Q17FR9\|SRRT_AEDAE Serrate RNA effector molecule homolog OS=Aedes aegypti GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|B3MJ69\|SRRT_DROAN Serrate RNA effector molecule homolog OS=Drosophila ananassae GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|B3N3F7\|SRRT_DROER Serrate RNA effector molecule homolog OS=Drosophila erecta GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|Q28WQ8\|SRRT_DROPS Serrate RNA effector molecule homolog OS=Drosophila pseudoobscura pseudoobscura GN=Ars2 PE=3 SV=2	Back alignment and function description

>sp\|B4H732\|SRRT_DROPE Serrate RNA effector molecule homolog OS=Drosophila persimilis GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|Q5TUF1\|SRRT_ANOGA Serrate RNA effector molecule homolog OS=Anopheles gambiae GN=Ars2 PE=3 SV=3	Back alignment and function description

>sp\|B4QCR6\|SRRT_DROSI Serrate RNA effector molecule homolog OS=Drosophila simulans GN=Ars2 PE=3 SV=1	Back alignment and function description

>sp\|Q9V9K7\|SRRT_DROME Serrate RNA effector molecule homolog OS=Drosophila melanogaster GN=Ars2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		595
255561268		823	arsenite-resistance protein, putative [R	0.956	0.691	0.765	0.0
449452660		755	PREDICTED: serrate RNA effector molecule	0.964	0.760	0.749	0.0
449452662		751	PREDICTED: serrate RNA effector molecule	0.957	0.758	0.746	0.0
296083972		735	unnamed protein product [Vitis vinifera]	0.939	0.760	0.764	0.0
296085418		724	unnamed protein product [Vitis vinifera]	0.833	0.685	0.766	0.0
225465363		748	PREDICTED: serrate RNA effector molecule	0.835	0.664	0.766	0.0
297822357		718	hypothetical protein ARALYDRAFT_481593 [	0.835	0.692	0.745	0.0
18401322		720	serrate RNA effector molecule [Arabidops	0.835	0.690	0.743	0.0
359479066		605	PREDICTED: serrate RNA effector molecule	0.722	0.710	0.841	0.0
297825995		720	hypothetical protein ARALYDRAFT_481599 [	0.801	0.662	0.749	0.0

>gi\|255561268\|ref\|XP_002521645.1\| arsenite-resistance protein, putative [Ricinus communis] gi\|223539157\|gb\|EEF40752.1\| arsenite-resistance protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/605 (76%), Positives = 511/605 (84%), Gaps = 36/605 (5%)

Query: 1   MAQVMNMAVDSLDRR-----RKDKSSAGDDNGNGNGNDNEDNIDNNNNNSAPQSSPPPPP 55
           MA+V+NM VDSLDRR     RK+KSSA  D+   +         NN+      S      
Sbjct: 72  MAEVINMPVDSLDRRGRERDRKEKSSA--DDPQSSSPPPPHPHQNNSRRRDRDSRDRDFD 129

Query: 56  PPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRN----RSPPPPMPRERDRDYKRRSTV 111
            P    +                 NRR  D+Y+RN    RSPP P PRER+R+YKRR+++
Sbjct: 130 RPPPPPQ-----------------NRR--DFYERNHNHHRSPPLP-PREREREYKRRNSL 169

Query: 112 SPPPPPLPYRDRRHSPPPRRSPPYKRSRRDDGGYEPRRGSPRGGFGP-DRRFGYDYTGGY 170
           SPPP  +PYRDRRHSPP RRSPPYKRSRRDDGGY+ RRGSPRGGFGP DRRFGYDY GGY
Sbjct: 170 SPPP--IPYRDRRHSPPARRSPPYKRSRRDDGGYDGRRGSPRGGFGPGDRRFGYDYGGGY 227

Query: 171 EREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQ 230
           EREMGGRPGY D+RP GR+ GR+ GGYQSGPSEWDS RG Y DASNT STQREGLMSYKQ
Sbjct: 228 EREMGGRPGYPDDRPRGRYMGRA-GGYQSGPSEWDSGRGNYIDASNTMSTQREGLMSYKQ 286

Query: 231 FIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRN 290
           FIQELEDD+LPAEAERRYQEYKSEYISTQKRVFF+AHKDEEWLKDKYHPTNLVAVIERRN
Sbjct: 287 FIQELEDDVLPAEAERRYQEYKSEYISTQKRVFFEAHKDEEWLKDKYHPTNLVAVIERRN 346

Query: 291 DLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAK 350
           +LARK AKDFLLDLQSGTLDLGP +N  SSNK GQTS+PNSDD+VD  GKRRRHGR PAK
Sbjct: 347 ELARKAAKDFLLDLQSGTLDLGPGINVLSSNKSGQTSDPNSDDEVDTSGKRRRHGRAPAK 406

Query: 351 ETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSH 410
           E D+LSAAPKAHP+SSEPRRIQ+D+EQAQALVRKLDSEKGI ENIL GSDN+KMNREK H
Sbjct: 407 ENDILSAAPKAHPVSSEPRRIQIDVEQAQALVRKLDSEKGIEENILGGSDNEKMNREKPH 466

Query: 411 G-STGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGK 469
           G S+GPVIIIRGLTSVKGLEG+ELLDTLITYLWR+HG+DYY MVET+EAKG+RHVRAEGK
Sbjct: 467 GSSSGPVIIIRGLTSVKGLEGIELLDTLITYLWRVHGLDYYRMVETTEAKGVRHVRAEGK 526

Query: 470 SSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGW 529
           SSD+ N+G EWEKKLD RWQERLRSQDPLE+MTAK+KI+A AV++LDP+VRKIRDEKYGW
Sbjct: 527 SSDVNNSGMEWEKKLDSRWQERLRSQDPLEVMTAKEKIEATAVESLDPYVRKIRDEKYGW 586

Query: 530 KYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVM 589
           KYGCGAKGCTKLFHAAEFVHKHLKLKHPELV+ELTSK+RE+LYFQNYMNDPDAPGGTPVM
Sbjct: 587 KYGCGAKGCTKLFHAAEFVHKHLKLKHPELVMELTSKLREDLYFQNYMNDPDAPGGTPVM 646

Query: 590 QQPMP 594
           QQP+P
Sbjct: 647 QQPLP 651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449452660\|ref\|XP_004144077.1\| PREDICTED: serrate RNA effector molecule-like isoform 1 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449452662\|ref\|XP_004144078.1\| PREDICTED: serrate RNA effector molecule-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296083972\|emb\|CBI24360.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085418\|emb\|CBI29150.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225465363\|ref\|XP_002273262.1\| PREDICTED: serrate RNA effector molecule-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297822357\|ref\|XP_002879061.1\| hypothetical protein ARALYDRAFT_481593 [Arabidopsis lyrata subsp. lyrata] gi\|297324900\|gb\|EFH55320.1\| hypothetical protein ARALYDRAFT_481593 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18401322|ref|NP_565635.1| serrate RNA effector molecule [Arabidopsis thaliana] gi|75339076|sp|Q9ZVD0.2|SRRT_ARATH RecName: Full=Serrate RNA effector molecule gi|14486602|gb|AAK63206.1|AF311221_1 C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] gi|16226331|gb|AAL16137.1|AF428305_1 At2g27100/T20P8.15 [Arabidopsis thaliana] gi|14532582|gb|AAK64019.1| unknown protein [Arabidopsis thaliana] gi|20197420|gb|AAC77868.2| expressed protein [Arabidopsis thaliana] gi|23296648|gb|AAN13138.1| unknown protein [Arabidopsis thaliana] gi|23506033|gb|AAN28876.1| At2g27100/T20P8.15 [Arabidopsis thaliana] gi|330252842|gb|AEC07936.1| serrate RNA effector molecule [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|359479066\|ref\|XP_002270387.2\| PREDICTED: serrate RNA effector molecule [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297825995\|ref\|XP_002880880.1\| hypothetical protein ARALYDRAFT_481599 [Arabidopsis lyrata subsp. lyrata] gi\|297326719\|gb\|EFH57139.1\| hypothetical protein ARALYDRAFT_481599 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		595
TAIR\|locus:2059294		720	SE "SERRATE" [Arabidopsis thal	0.704	0.581	0.731	1.3e-169
DICTYBASE\|DDB_G0277375		1068	DDB_G0277375 "RNA recognition	0.193	0.107	0.355	5.3e-24
UNIPROTKB\|B4KLY7		980	Ars2 "Serrate RNA effector mol	0.205	0.124	0.346	3.4e-22
UNIPROTKB\|B4QCR6		947	Ars2 "Serrate RNA effector mol	0.242	0.152	0.319	1.6e-21
UNIPROTKB\|B3N3F7		947	Ars2 "Serrate RNA effector mol	0.334	0.210	0.292	2.5e-21
UNIPROTKB\|B3MJ69		948	Ars2 "Serrate RNA effector mol	0.349	0.219	0.276	5.6e-21
UNIPROTKB\|B4II37		947	Ars2 "Serrate RNA effector mol	0.245	0.154	0.298	1.4e-20
UNIPROTKB\|B4LIK8		963	Ars2 "Serrate RNA effector mol	0.314	0.194	0.282	2e-20
UNIPROTKB\|Q17FR9		937	Ars2 "Serrate RNA effector mol	0.245	0.155	0.306	2.9e-20
FB\|FBgn0033062		943	Ars2 [Drosophila melanogaster	0.206	0.130	0.343	3.8e-20

TAIR\|locus:2059294 SE "SERRATE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1649 (585.5 bits), Expect = 1.3e-169, P = 1.3e-169
 Identities = 316/432 (73%), Positives = 355/432 (82%)

Query:   164 YDYTGGYEREMGGRPGYGDERPHGRFAGRSSGGYQSGPSEWDSSRGGYGDASNTGSTQRE 223
             YD+ GGY+REMGGRPGYGDERPHGRF GR    YQ    +W+  RGGYGDASN+G+ QR+
Sbjct:   142 YDHGGGYDREMGGRPGYGDERPHGRFMGR----YQ----DWEGGRGGYGDASNSGNPQRD 193

Query:   224 GLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLV 283
             GLMSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL+
Sbjct:   194 GLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLL 253

Query:   284 AVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRR 343
             +VIERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+R
Sbjct:   254 SVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKR 311

Query:   344 HGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDK 403
             HG G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K
Sbjct:   312 HGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEK 371

Query:   404 MNREKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLR 462
               REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLR
Sbjct:   372 SGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLR 431

Query:   463 HVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTXXXXXXXXXXXXXXPFVRKI 522
             HVRAEGK SD    G E E K D  WQERL+ QDPLE+M               P VRKI
Sbjct:   432 HVRAEGKVSDA--KGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKI 489

Query:   523 RDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDA 582
             RDEKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNYMNDP+A
Sbjct:   490 RDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYMNDPNA 549

Query:   583 PGGTPVMQQPMP 594
             PGG P  QQ  P
Sbjct:   550 PGGQPATQQSGP 561

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0016568 "chromatin modification" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0048509 "regulation of meristem development" evidence=IMP

GO:2000011 "regulation of adaxial/abaxial pattern formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031053 "primary miRNA processing" evidence=IMP

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008380 "RNA splicing" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE\|DDB_G0277375 DDB_G0277375 "RNA recognition motif-containing protein RRM" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|B4KLY7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila mojavensis (taxid:7230)]	Back alignment and assigned GO terms

UNIPROTKB\|B4QCR6 Ars2 "Serrate RNA effector molecule homolog" [Drosophila simulans (taxid:7240)]	Back alignment and assigned GO terms

UNIPROTKB\|B3N3F7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|B3MJ69 Ars2 "Serrate RNA effector molecule homolog" [Drosophila ananassae (taxid:7217)]	Back alignment and assigned GO terms

UNIPROTKB\|B4II37 Ars2 "Serrate RNA effector molecule homolog" [Drosophila sechellia (taxid:7238)]	Back alignment and assigned GO terms

UNIPROTKB\|B4LIK8 Ars2 "Serrate RNA effector molecule homolog" [Drosophila virilis (taxid:7244)]	Back alignment and assigned GO terms

UNIPROTKB\|Q17FR9 Ars2 "Serrate RNA effector molecule homolog" [Aedes aegypti (taxid:7159)]	Back alignment and assigned GO terms

FB\|FBgn0033062 Ars2 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVD0	SRRT_ARATH	No assigned EC number	0.7437	0.8352	0.6902	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		595
pfam12066		110	pfam12066, DUF3546, Domain of unknown function (DU	3e-31
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	3e-06
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	3e-04
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-04
PHA03321		694	PHA03321, PHA03321, tegument protein VP11/12; Prov	0.001
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.001
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
pfam05750		300	pfam05750, Rubella_Capsid, Rubella capsid protein	0.002
PHA03201		318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.002
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003

>gnl\|CDD\|192930 pfam12066, DUF3546, Domain of unknown function (DUF3546)	Back alignment and domain information

 Score =  117 bits (294), Expect = 3e-31
 Identities = 43/84 (51%), Positives = 57/84 (67%)

Query: 227 SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVI 286
           ++KQF++  +DDI PAEAE+RYQEYK+E+   Q + FFD HKDEEW ++KYHP  L    
Sbjct: 1   TFKQFLESQDDDISPAEAEKRYQEYKTEFRRKQLQDFFDQHKDEEWFREKYHPEELAKRR 60

Query: 287 ERRNDLARKVAKDFLLDLQSGTLD 310
           E R +L +     FL  L+SGT D
Sbjct: 61  EERRELRKNRLNVFLELLESGTFD 84

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. Length = 110

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|114474 pfam05750, Rubella_Capsid, Rubella capsid protein	Back alignment and domain information

>gnl\|CDD\|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		595
KOG2295		648	consensus C2H2 Zn-finger protein [General function	100.0
PF04959		214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	100.0
PF12066		110	DUF3546: Domain of unknown function (DUF3546); Int	99.92
KOG2295		648	consensus C2H2 Zn-finger protein [General function	98.98
PF13821		55	DUF4187: Domain of unknown function (DUF4187)	98.1
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	91.35
PF00096		23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	89.92
PF13894		24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	89.84
smart00451		35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	85.95
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	83.74
PF12171		27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	83.29
KOG1994		268	consensus Predicted RNA binding protein, contains	82.52
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	81.1
PF12756		100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	80.56
PF12874		25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	80.19

>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=8.7e-78  Score=641.68  Aligned_cols=516  Identities=27%  Similarity=0.273  Sum_probs=440.3

Q ss_pred             CCCCCCCCCCCC---CCcccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhccCCCCCCCCCCC
Q 007632           43 NNSAPQSSPPPP---PPPARRRERDSRERRDDRDLDRPPPNRRGPDYYDRNRSPPPPMPRERDRDYKRRSTVSPPPPPLP  119 (595)
Q Consensus        43 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (595)
                      .-++|-|++|+-   .+++-++.+++|.+++++|+++++..++   |-++..-|++      .+.+++..+.++++   +
T Consensus        27 ~r~~p~S~sp~geqs~~~p~r~t~kkr~~~~dddi~e~~p~kr---ynd~k~dp~~------qq~~~~f~a~k~ee---w   94 (648)
T KOG2295|consen   27 ERSQPRSQSPPGEQSAYHPERSTFKKRLNSYDDDIRESGPYKR---YNDYKIDPRT------QQNAVFFEAHKDEE---W   94 (648)
T ss_pred             CCCCccccCCCccccccCcccchHHHhhcccccccccCCCccc---ccccCCCCch------hhhHHHHHhcCCcc---h
Confidence            334444444444   3455678899999999999999966664   7666665552      26788888777776   9


Q ss_pred             CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 007632          120 YRDRRHSPP--PRRSPPYKRSRRDDGGYEPRRGSPRGGFGP-DRRFGYDYTGGYEREMGGRPGYGDERPHGRFAGRSSGG  196 (595)
Q Consensus       120 ~~~rr~sp~--~~~sPp~kR~rr~~~g~d~~~g~p~~~~~~-d~~~g~~~~~g~~~~~gg~~~~~~~~~~g~~~~r~~~g  196 (595)
                      ||+++|+++  .++++++++.+++..+|+.+.+.|.++++. |.+|+|++.++|++.|++..+++....++..+++..  
T Consensus        95 yr~k~h~d~~~k~r~~~~g~yqn~~q~f~~r~e~~~~~~~~~D~~fada~~~~~d~~vv~~~g~te~~~r~~l~qk~e--  172 (648)
T KOG2295|consen   95 YRKKYHPDATEKLRNSLHGTYQNRLQVFYARTERGFFESHCLDAWFADAIWVMLDQGVVKEEGGTEKSLRRALYQKFE--  172 (648)
T ss_pred             hhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcccchhhhHhhhhhhhhhcccCCCcccHHHHHHHHhh--
Confidence            999999999  788999999998888999999999999998 999999999999999999999999999988887776  


Q ss_pred             CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhhc
Q 007632          197 YQSGPSEWDSSRGGYGDASNTGSTQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDK  276 (595)
Q Consensus       197 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~lmsFKqFl~~~~D~Itp~eA~~rY~eYK~ef~~~q~~~FF~~HK~eeWFrEK  276 (595)
                            + ..+++||.++..++..+....|++|+     +|++++..+...|++| .+|. .|..+||+.||...||..+
T Consensus       173 ------D-e~~~~gy~De~~~gt~e~e~kkssk~-----ddd~d~s~~ee~e~e~-se~~-tqksa~~n~hke~sll~rn  238 (648)
T KOG2295|consen  173 ------D-EGLDAGYKDEFQLGTAEDEIKKSSKP-----DDDTDDSILEENEPEL-SEWG-TQKSANDNTHKECSLLVRN  238 (648)
T ss_pred             ------h-ccccccccccccCCCcchhhhcccCc-----ccccCcccccccchhh-hhhh-hhhhhhhhhhHHHHHHHhc
Confidence                  3 45678999988888899999999998     9999999999999999 8887 8999999999999999999


Q ss_pred             cCCcchHHHHHHH-------------HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccc
Q 007632          277 YHPTNLVAVIERR-------------NDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRR  343 (595)
Q Consensus       277 Y~P~~l~~~~erR-------------~e~~~~~ak~F~~dLesG~fD~~pgv~~~~~~ksG~~sdpn~ede~~~~~Kr~R  343 (595)
                      |+|.++.+.++..             +-+++..+..|+-.+.++++++++.+.+.  ++.+-++.++++.+...+++|.|
T Consensus       239 i~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL--n~irl~s~~~se~en~~i~rrvr  316 (648)
T KOG2295|consen  239 ILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL--NGIRLRSNFLSESENPDITRRVR  316 (648)
T ss_pred             cCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh--hhccccccccccccccCccceec
Confidence            9999998887765             55667778888889999999998765555  23444567788877777888888


Q ss_pred             cCCCCCCcccccc-cCCCCCCCCCChhhHHHhHHHHHHHHHHHhhhhcccccccCCCccccccccccC-CCCCCceeecc
Q 007632          344 HGRGPAKETDLLS-AAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSH-GSTGPVIIIRG  421 (595)
Q Consensus       344 ~Gw~~~k~~D~~s-~aPka~pi~S~p~RI~~DLeqA~~Lv~kLDaEkGIe~n~L~~~d~~~~d~~~s~-~s~gp~~i~rg  421 (595)
                      ++-+-.+...+++ +|+|.+.+.+.+-||..+.+|+..|+.+|+.+.-|..|++.-.....+..++.+ ++.+|+++++|
T Consensus       317 ~~~Gia~~keiasn~a~k~~~lldk~irl~~~a~~t~al~tkl~s~n~i~kni~d~l~te~S~eE~e~~gssg~e~p~eg  396 (648)
T KOG2295|consen  317 PINGIAKHKEIASNAAQKLKNLLDKLIRLIDRASQTQALVTKLSSPNPIAKNIEDRLKTEASMEEDELLGSSGPEVPIEG  396 (648)
T ss_pred             cCCchhhHHHHHHHHHHhhhHHHhhhHHHhhcccccccchhhccCCCHHHHHHHHHhhhhcchhhhhhcCCCCCcCcccc
Confidence            8776555555444 799999999999999999999999999999999998888655444444444444 47889999999


Q ss_pred             cccccCcchhhHHHHHHHHHHHHhhcccccccccc------cccccccccCCCCCCCcCCchhhHHHHhHHHHHHHhhcc
Q 007632          422 LTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS------EAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQ  495 (595)
Q Consensus       422 ~~~v~g~e~~~~LDllI~YLRrVHs~dYY~~~E~~------er~g~~HvR~~~~~~~~~~~~~~W~kkld~~~~~rL~~~  495 (595)
                      ++.+.++..+++||+||+|||+||++|||+.+||+      ++||++|||+++..+.  .++.+|+++|++.|+.+|...
T Consensus       397 ~~~er~d~~lk~LDll~~YLr~VhslDfyn~~ey~~e~~mpnrcgl~hvR~~~~vs~--~ev~e~es~f~s~le~~l~~~  474 (648)
T KOG2295|consen  397 LTSERDDIRLKLLDLLAEYLRIVHSLDFYNSKEYESEDAMPNRCGLIHVRGKGFVSS--KEVGEEESIFLSDLENNLACL  474 (648)
T ss_pred             CccccchhHHHHHHHHHHHHHHHHhcccccccccchhhhcccccCceeecccCCCCc--ccchhHHHHHHHHhhhccccc
Confidence            99999999999999999999999999999999987      3899999999854432  357789999999999999888


Q ss_pred             ChHHHhhhhchhHHHHHHhhhhHHHhhhhcccCCccccCCCCccccccchhHHHHHhhhhChHHHHHHHHhHHHHHHHHh
Q 007632          496 DPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQN  575 (595)
Q Consensus       496 dpl~~l~~kdkid~~l~e~le~~Vkk~~dE~~g~K~rC~~~~CtKLFKg~EFV~KHI~nKH~E~V~ev~~kv~E~~yfnN  575 (595)
                      ++++.+-++.++.+.++++|++||.++++|+++|||+|+|++|+|||||||||+|||++||.|||+++++   |++||||
T Consensus       475 ~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~lsgc~KlF~gpEFvrKHi~~KH~d~leeirk---ea~ffnn  551 (648)
T KOG2295|consen  475 LELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCPLSGCAKLFKGPEFVRKHINKKHKDKLEEIRK---EAIFFNN  551 (648)
T ss_pred             ccchHHHHHHhcccCHHHHHHHHHHHHHHHhhcccccCCCcchHhhccCHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence            8888777787888889999999999999999999999999999999999999999999999999999996   8999999


Q ss_pred             hhcCCCCCCCCCCCCCCCC
Q 007632          576 YMNDPDAPGGTPVMQQPMP  594 (595)
Q Consensus       576 Yl~DP~rP~~~p~~~q~~~  594 (595)
                      ||+|||||..+++ +||+|
T Consensus       552 Yl~Dp~rp~~pe~-~~q~p  569 (648)
T KOG2295|consen  552 YLLDPCRPMDPEV-VSQSP  569 (648)
T ss_pred             hccCccccCCCcc-ccCCC
Confidence            9999999999999 55554

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []	Back alignment and domain information

>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13821 DUF4187: Domain of unknown function (DUF4187)	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A	Back alignment and domain information

>smart00451 ZnF_U1 U1-like zinc finger	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length	Back alignment and domain information

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A	Back alignment and domain information

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		595
3ax1_A		358	Molecular Insights Into Mirna Processing By Arabido		1e-153

>pdb|3AX1|A Chain A, Molecular Insights Into Mirna Processing By Arabidopsis Serrate Length = 358

Back alignment and structure

Iteration: 1

Score = 537 bits (1384), Expect = e-153, Method: Compositional matrix adjust. Identities = 264/355 (74%), Positives = 296/355 (83%), Gaps = 5/355 (1%) Query: 224 GLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLV 283 GLMSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL+ Sbjct: 1 GLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLL 60 Query: 284 AVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRR 343 +VIERRNDLA+KVAKDFLLDLQSGTLDLGP+V A NK G+TSEPNS+D+ GKR+R Sbjct: 61 SVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTA--LNKSGRTSEPNSEDEAAGVGKRKR 118 Query: 344 HGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDK 403 HG G AKE +LLSAAPKA +S+P+RI D+EQ QALVRKLDSEK I EN+L GS+ +K Sbjct: 119 HGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEK 178 Query: 404 MNREKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLR 462 REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLR Sbjct: 179 SGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLR 238 Query: 463 HVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTXXXXXXXXXXXXXXPFVRKI 522 HVRAEGK SD G E E K D WQERL+ QDPLE+M P VRKI Sbjct: 239 HVRAEGKVSDA--KGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKI 296 Query: 523 RDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYM 577 RDEKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNY+ Sbjct: 297 RDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYL 351

PyMOL of 3ax1

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		595
3ax1_A		358	Serrate RNA effector molecule; miRNA processing, p	1e-117
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	7e-04

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana} Length = 358	Back alignment and structure

 Score =  350 bits (899), Expect = e-117
 Identities = 275/361 (76%), Positives = 309/361 (85%), Gaps = 5/361 (1%)

Query: 224 GLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLV 283
           GLMSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL+
Sbjct: 1   GLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLL 60

Query: 284 AVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRR 343
           +VIERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+R
Sbjct: 61  SVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKR 118

Query: 344 HGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDK 403
           HG G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K
Sbjct: 119 HGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEK 178

Query: 404 MNREKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLR 462
             REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLR
Sbjct: 179 SGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLR 238

Query: 463 HVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKI 522
           HVRAEGK SD    G E E K D  WQERL+ QDPLE+M AK+KIDAAA +ALDP VRKI
Sbjct: 239 HVRAEGKVSD--AKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKI 296

Query: 523 RDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDA 582
           RDEKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNY+     
Sbjct: 297 RDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYLEHHHH 356

Query: 583 P 583
            
Sbjct: 357 H 357

PyMOL of 3ax1

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		595
3ax1_A		358	Serrate RNA effector molecule; miRNA processing, p	100.0
2lv2_A		85	Insulinoma-associated protein 1; structural genomi	83.68
2adr_A		60	ADR1; transcription regulation, zinc finger,; NMR	83.63
1x5w_A		70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	81.84
2d9h_A		78	Zinc finger protein 692; ZF-C2H2 domain, structura	81.8
1bbo_A		57	Human enhancer-binding protein MBP-1; DNA-binding	81.11
1znf_A		27	31ST zinc finger from XFIN; zinc finger DNA bindin	80.89
1klr_A		30	Zinc finger Y-chromosomal protein; transcription;	80.75
1paa_A		30	Yeast transcription factor ADR1; transcription reg	80.45

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=4.4e-99  Score=786.37  Aligned_cols=354  Identities=77%  Similarity=1.199  Sum_probs=286.0

Q ss_pred             CCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 007632          224 GLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLD  303 (595)
Q Consensus       224 ~lmsFKqFl~~~~D~Itp~eA~~rY~eYK~ef~~~q~~~FF~~HK~eeWFrEKY~P~~l~~~~erR~e~~~~~ak~F~~d  303 (595)
                      +||||||||++|+|+|||+||+++|++||.+|.++|++.||++||+++||++||||+.+.+++++|++++++.|+.|+++
T Consensus         1 glmsFKqFl~~~~D~isp~eA~~~Y~eYk~e~~~~q~~~FF~~HK~e~WfreKY~P~~l~~~~~~R~e~ak~~a~~F~~~   80 (358)
T 3ax1_A            1 GLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSVIERRNDLAQKVAKDFLLD   80 (358)
T ss_dssp             CCCCHHHHGGGTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCcccccccCCCCCCCCCChhhHHHhHHHHHHHHH
Q 007632          304 LQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVR  383 (595)
Q Consensus       304 LesG~fD~~pgv~~~~~~ksG~~sdpn~ede~~~~~Kr~R~Gw~~~k~~D~~s~aPka~pi~S~p~RI~~DLeqA~~Lv~  383 (595)
                      |++|+||+++++++.  +++|.++++++++.++.++|++++||++.+++|++++||++||+||+|+||++||+||++||+
T Consensus        81 L~~G~ld~~~~~~~~--~~~~~~~~~~~~d~~~~~~k~~~~g~~~~~~~d~~~~ap~~~P~~S~p~RI~~Dle~a~~Lv~  158 (358)
T 3ax1_A           81 LQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVR  158 (358)
T ss_dssp             HHTTCCCCCSBSSCC--C-----------------------------------CCCBCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCccccc--cccCCCCCCChhhhhhccccccccCCCcccccchhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999998877774  577878899998888888899999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcccccccCCCccccccccccCC-CCCCceeecccccccCcchhhHHHHHHHHHHHHhhcccccccccccccccc
Q 007632          384 KLDSEKGITENILCGSDNDKMNREKSHG-STGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLR  462 (595)
Q Consensus       384 kLDaEkGIe~n~L~~~d~~~~d~~~s~~-s~gp~~i~rg~~~v~g~e~~~~LDllI~YLRrVHs~dYY~~~E~~er~g~~  462 (595)
                      +||+|+||++|+|...++...++++++. ++||++|++|+.++++++++++||++|+|||+||||||||++||+++||++
T Consensus       159 kLD~e~gie~n~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~LD~~i~YLRrVH~~dYY~~~E~~~~~g~~  238 (358)
T 3ax1_A          159 KLDSEKKIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLR  238 (358)
T ss_dssp             HHHHHHTCCCCTTC---------------CCCCCEEECCSSCCEEECSHHHHHHHHHHHHHHHCEEGGGTEECTTCCSBC
T ss_pred             HHHHhhCCcccccccccccccccccccccCCCcchhhccccchhhhhhHHHHHHHHHHHHHHHcccccceEeecCccccC
Confidence            9999999999999998777777777775 789999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcCCchhhHHHHhHHHHHHHhhccChHHHhhhhchhHHHHHHhhhhHHHhhhhcccCCccccCCCCccccc
Q 007632          463 HVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLF  542 (595)
Q Consensus       463 HvR~~~~~~~~~~~~~~W~kkld~~~~~rL~~~dpl~~l~~kdkid~~l~e~le~~Vkk~~dE~~g~K~rC~~~~CtKLF  542 (595)
                      |||++.++.+  ++..+|+++|+++|+.+|+.++|++.++++++|+++++++|++||+|++||+|||||+|++++|+|||
T Consensus       239 HvR~~~~~~~--~~~~~we~~ld~~w~~~l~~~dp~~~~lg~k~ie~~~~e~l~~~v~k~~dE~~gwK~~C~~~~C~KLF  316 (358)
T 3ax1_A          239 HVRAEGKVSD--AKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLF  316 (358)
T ss_dssp             CBC------------CHHHHHHHHHHHHHHHSCCHHHHHHCHHHHHHHHHHHHGGGEEEEECSSSSEEEEECSSSCCCEE
T ss_pred             eecCCCCCCC--CchhhHHHHHHHHHHHHHcccChHHHHhcCccHHHHHHHHHHHHHHHHhhcccccccCCCCCCcCccc
Confidence            9999877553  36779999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhhhhChHHHHHHHHhHHHHHHHHhhhcCCC
Q 007632          543 HAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPD  581 (595)
Q Consensus       543 Kg~EFV~KHI~nKH~E~V~ev~~kv~E~~yfnNYl~DP~  581 (595)
                      ||++||+|||+|||+|+|++++++|.|.+||+|||.--+
T Consensus       317 k~~eFV~KHi~~KH~e~v~~~~~~v~~~~~~~~~~~~~~  355 (358)
T 3ax1_A          317 HAAEFVYKHLKLKHTELVTELTTKVREELYFQNYLEHHH  355 (358)
T ss_dssp             SSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999996433

PyMOL of 3ax1

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}	Back alignment and structure

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1	Back alignment and structure

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1	Back alignment and structure

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A	Back alignment and structure

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1	Back alignment and structure

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A	Back alignment and structure

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		595
d2glia5		29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.58
d1ubdc1		28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.49
d2glia3		30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.3
d1ubdc4		28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.59
d1zfda_		32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	87.1
d2dlka1		30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.45
d2dlka2		36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.1
d2ct1a2		36	Transcriptional repressor CTCF {Human (Homo sapien	86.06
d2glia1		32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.18
d1ubdc3		30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.08
d1sp2a_		31	Transcription factor sp1 {Human (Homo sapiens) [Ta	85.07
d1a1ia1		29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	84.74
d1ncsa_		47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	84.51

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0024  Score=42.78  Aligned_cols=27  Identities=37%  Similarity=0.678  Sum_probs=25.6

Q ss_pred             cccCCCCccccccchhHHHHHhhhhCh
Q 007632          531 YGCGAKGCTKLFHAAEFVHKHLKLKHP  557 (595)
Q Consensus       531 ~rC~~~~CtKLFKg~EFV~KHI~nKH~  557 (595)
                      |-|.+.+|+|-+-.|.=++|||++.|+
T Consensus         3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           3 YVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eecccCCCCcccCCHHHHHHHHHhhCC
Confidence            789999999999999999999999985

PyMOL of d2glia5

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure