Citrus Sinensis ID: 007634
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | 2.2.26 [Sep-21-2011] | |||||||
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.998 | 0.637 | 0.880 | 0.0 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.998 | 0.638 | 0.873 | 0.0 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | yes | no | 0.989 | 0.644 | 0.845 | 0.0 | |
| O82422 | 944 | Probable UDP-N-acetylgluc | N/A | no | 0.921 | 0.580 | 0.835 | 0.0 | |
| Q8LP10 | 918 | Probable UDP-N-acetylgluc | N/A | no | 0.927 | 0.601 | 0.831 | 0.0 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | yes | no | 0.964 | 0.619 | 0.789 | 0.0 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.806 | 0.491 | 0.284 | 1e-49 | |
| O18158 | 1151 | UDP-N-acetylglucosamine-- | yes | no | 0.877 | 0.453 | 0.263 | 3e-44 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.875 | 0.498 | 0.253 | 4e-44 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.875 | 0.498 | 0.253 | 4e-44 |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/594 (88%), Positives = 560/594 (94%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQV
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQV 594
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/594 (87%), Positives = 556/594 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E + + +NGFLKG QS G+ GSP + K FE KDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESESLGNNGFLKGGQSSSGSKGSPGRISHVKKIFEDKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKDS ++E+ IGKGICLQMQN GRLAF+SFSEA+K+DPQNACA T
Sbjct: 61 RNKFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL YNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG+RFM+LY QYTSWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTDDKLYEAHRDWGRRFMKLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+K PERPLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS+VVKADAKT RFR+KV
Sbjct: 481 SKVPERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
MKKGG+WRDIYGIDEKKV++M+REDK+DI+VELTGHTANNKLG MAC+PAPVQV
Sbjct: 541 MKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQV 594
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/594 (84%), Positives = 538/594 (90%), Gaps = 5/594 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY YKVVVYSAVVKADAKT RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQV
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQV 589
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/548 (83%), Positives = 506/548 (92%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL YANILRSRNKF DAL LY VL+KD NVEA IGKGICLQ Q++ R A D F+
Sbjct: 33 EGTDALRYANILRSRNKFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFT 92
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
EAVK+DP+NACA THCG++YKDEG LVEAAE+Y KA SADPSYK A+E LAIVLTDLGTS
Sbjct: 93 EAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTS 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
LKLAGNT+DGIQKY EAL++D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAE
Sbjct: 153 LKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AYCNMGVIYKNRG+L++AIACY+RCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGV
Sbjct: 213 AYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGV 272
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
AYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKD
Sbjct: 273 AYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKD 332
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYN
Sbjct: 333 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYN 392
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
NLGVLYRDAGSI+L++ AYE+CL+IDPDSRNAGQNRLLAMNYI+EG DDKL++AHR+WGK
Sbjct: 393 NLGVLYRDAGSITLSVQAYERCLQIDPDSRNAGQNRLLAMNYIDEGSDDKLYDAHREWGK 452
Query: 467 RFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 526
RFM+LY+QYTSWDN K +RPLVIGYVSPD+FTHSVSYF+EAPL +HDY KVVVYS V
Sbjct: 453 RFMKLYAQYTSWDNPKVADRPLVIGYVSPDFFTHSVSYFVEAPLTHHDYTKCKVVVYSGV 512
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMA 586
VKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA +VREDK+DILVELTGHTANNKLG MA
Sbjct: 513 VKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVREDKVDILVELTGHTANNKLGTMA 572
Query: 587 CQPAPVQV 594
C+PAP+QV
Sbjct: 573 CRPAPIQV 580
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/574 (83%), Positives = 511/574 (89%), Gaps = 22/574 (3%)
Query: 21 GFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG 80
G LKG QS + GSPV K EGK+A++YA ILRSRNKFVDALA+YE LEKDS
Sbjct: 12 GLLKGVQSSSDSKGSPVK-----KSLEGKEAITYAKILRSRNKFVDALAIYE--LEKDSK 64
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA THCGILYKDEGRLVEAA SY
Sbjct: 65 NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAA-SYQ 123
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL ADPSYKPAAECLA VL DLGTSLK GNTQ+GIQKYYEA+KIDPHYAPA YNLGVV
Sbjct: 124 KALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYNLGVV 181
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
YSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL CLAVSPNFEI
Sbjct: 182 YSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSPNFEI 232
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
AKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNWHY+DAMYNLGVAYGEMLKFDMAI
Sbjct: 233 AKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKFDMAI 292
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVV+TV
Sbjct: 293 IFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTV 352
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
QGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I LAI+AYEQCLKIDPDSRNAGQ
Sbjct: 353 QGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRNAGQ 412
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
NRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTSWDN KDPERPLVIGY SPD+F
Sbjct: 413 NRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTSWDNPKDPERPLVIGYGSPDHF-- 470
Query: 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAA 560
+SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFRE+V+KKGGIWRDIYGIDEKKVA+
Sbjct: 471 -LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFRERVLKKGGIWRDIYGIDEKKVAS 529
Query: 561 MVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QV
Sbjct: 530 MIREDKVDILIELTGHTANNKLGMMACRPAPIQV 563
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization. Eustoma exaltatum subsp. russellianum (taxid: 52518) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/588 (78%), Positives = 518/588 (88%), Gaps = 14/588 (2%)
Query: 7 DVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVD 66
D S GRE + V +P +G V L +GKD L YANILRSRNKF +
Sbjct: 7 DSSEGRESNGV-----------VPERNGGAVPAKQQL---DGKDTLRYANILRSRNKFAE 52
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL LY VLEKD NVEA IGKGICLQ Q++ A + F+EAV++DP NACA T+CG++Y
Sbjct: 53 ALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIY 112
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
KDEG LVEAAE+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++
Sbjct: 113 KDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEV 172
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIA
Sbjct: 173 DSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIA 232
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
CYERCL +SPNFEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNL
Sbjct: 233 CYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNL 292
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
GVAYGEML F+MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN
Sbjct: 293 GVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 352
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
FSQSLNNLGVVYTVQGKMDAA+ MI+KAI AN TYAEAYNNLGVLYRDAGSI+ A+ AYE
Sbjct: 353 FSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYE 412
Query: 427 QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 486
+CL+IDPDSRNAGQNRLLA+NYI+EG DDKL++AHR+WGKRF++LY QYTSWDN K +R
Sbjct: 413 KCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADR 472
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGI 546
PLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVYS VVKADAKT+RF++KV+KKGG+
Sbjct: 473 PLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGL 532
Query: 547 WRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
WRDIYGIDEKKVA++VREDK+DILVELTGHTANNKLG MAC+PAP+QV
Sbjct: 533 WRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLGTMACRPAPIQV 580
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 155/544 (28%), Positives = 245/544 (45%), Gaps = 64/544 (11%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
GRL A +A+ L+P AH++ G L K +G + EA Y +A+ P++
Sbjct: 169 GRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF------ 222
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
AI ++L +G+ +Q Y EA+K+ P + AY NLG VY L + A+ CY+
Sbjct: 223 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
A RP A A+ N+ IY +G L+ AI Y++ L+ P F A NN+ AL D+G
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR- 340
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+++ V Y + L ++ AM NLG Y E A ++ +
Sbjct: 341 ------VDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSA 394
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
NNL +IYK + N A+ CY L I P + +L N G Y G++ A + AI
Sbjct: 395 PFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAI 454
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD- 454
PT AEA+ NL Y+D+G + AI +Y+Q L + PD A N L + + D
Sbjct: 455 NFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDR 514
Query: 455 DKLF-----------------------------------EAHRDWGKRFMRLYSQYTSWD 479
K+F E R + + S++
Sbjct: 515 SKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGLPP 574
Query: 480 NTKDPERP---------LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD 530
T P L IGYVS D+ H +S+ + + H+ +N +V Y+ + A+
Sbjct: 575 FTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYA--LSAN 632
Query: 531 AKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 590
T +R+++ + + D+ + +A ++ +DKI IL+ L G+T + + A QPA
Sbjct: 633 DNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPA 691
Query: 591 PVQV 594
P+QV
Sbjct: 692 PIQV 695
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 154/584 (26%), Positives = 257/584 (44%), Gaps = 62/584 (10%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G AA +AI NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDW--GKRF 468
G+++ AI +Y LK+ PD +A N I + +D KL + D KR
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQLCKKRL 606
Query: 469 MRLYSQYTSWDNTKDPER-----------------------PLV--------------IG 491
++ ++ R PL+ IG
Sbjct: 607 PSVHPHHSMLYPLSHAARIAIAAKHASLCFDKVHVQMLGKTPLIHADRFSVQNGQRLRIG 666
Query: 492 YVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY 551
YVS D+ H S+ +++ HD +V Y+ V FR K+M + + D+
Sbjct: 667 YVSSDFGNHPTSHLMQSIPGMHDRSRVEVFCYALSVN---DGTNFRSKLMNESEHFVDLS 723
Query: 552 GID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
I K A + +D I IL+ + G+T + + A +PAP+QV
Sbjct: 724 QIPCNGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQV 767
|
Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/580 (25%), Positives = 257/580 (44%), Gaps = 59/580 (10%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 322
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 382
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D+
Sbjct: 383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 442
Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
G+I AI +Y LK+ PD +A +NRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 444 LAMNY-------INEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
+++ ++ G + E H + + + + Y + K + L +GYVS
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562
Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 619
Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 620 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 659
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/580 (25%), Positives = 257/580 (44%), Gaps = 59/580 (10%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEDCYNTALRL 322
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 382
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G + A + +AI NP +A+A++NL +++D+
Sbjct: 383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 442
Query: 416 GSISLAIDAYEQCLKIDPDSRNA--------------------------------GQNRL 443
G+I AI +Y LK+ PD +A +NRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 444 LAMNY-------INEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVS 494
+++ ++ G + E H + + + + Y + K + L +GYVS
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562
Query: 495 PDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID 554
D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIP 619
Query: 555 -EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 620 CNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 659
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| 255579381 | 930 | o-linked n-acetylglucosamine transferase | 0.998 | 0.638 | 0.899 | 0.0 | |
| 75318818 | 932 | RecName: Full=Probable UDP-N-acetylgluco | 0.998 | 0.637 | 0.880 | 0.0 | |
| 224088480 | 934 | predicted protein [Populus trichocarpa] | 0.998 | 0.635 | 0.880 | 0.0 | |
| 224140075 | 917 | predicted protein [Populus trichocarpa] | 0.998 | 0.647 | 0.884 | 0.0 | |
| 225440809 | 914 | PREDICTED: probable UDP-N-acetylglucosam | 0.994 | 0.647 | 0.888 | 0.0 | |
| 256772634 | 916 | putative SPINDLY protein [Rosa lucieae] | 0.996 | 0.647 | 0.879 | 0.0 | |
| 195423963 | 934 | SPINDLY [Sinningia speciosa] | 0.996 | 0.634 | 0.873 | 0.0 | |
| 356500631 | 928 | PREDICTED: probable UDP-N-acetylglucosam | 0.993 | 0.636 | 0.870 | 0.0 | |
| 449526080 | 925 | PREDICTED: probable UDP-N-acetylglucosam | 0.998 | 0.642 | 0.861 | 0.0 | |
| 356534448 | 929 | PREDICTED: probable UDP-N-acetylglucosam | 0.993 | 0.636 | 0.852 | 0.0 |
| >gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/595 (89%), Positives = 563/595 (94%), Gaps = 1/595 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQS-LPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW EK+ NG+E P++DNGFLKG Q P SGSPVAV + LKG E KD+LSYANILR
Sbjct: 1 MAWTEKNNGNGKEGGPIEDNGFLKGTQEPSPSASGSPVAVAAGLKGIEEKDSLSYANILR 60
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALA+YE VLEKDSGNVEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA
Sbjct: 61 SRNKFVDALAIYESVLEKDSGNVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACAL 120
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYK+EGRLVEAAESY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQK
Sbjct: 121 THCGILYKEEGRLVEAAESYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQK 180
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
YYEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRG
Sbjct: 181 YYEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRG 240
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG+AYYKKALYYNWHY
Sbjct: 241 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGIAYYKKALYYNWHY 300
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 ADAMYNLGVAYGEMLKFDNAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQT 360
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I
Sbjct: 361 ALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNIP 420
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
+AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEGHD+KLFEAHRDWG+RFMRLY QYT WD
Sbjct: 421 MAINAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDEKLFEAHRDWGRRFMRLYPQYTMWD 480
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N KD +RPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 481 NPKDLDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYKVVVYSAVVKADAKTIRFREK 540
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
V+K+GGIWRDIYGIDEKKVA+MVRED +DILVELTGHTANNKLGMMAC+PAP+QV
Sbjct: 541 VLKQGGIWRDIYGIDEKKVASMVREDNVDILVELTGHTANNKLGMMACRPAPIQV 595
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75318818|sp|O82039.1|SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY gi|3319682|emb|CAA76834.1| SPINDLY protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/594 (88%), Positives = 560/594 (94%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 361 LTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISL 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN
Sbjct: 421 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV
Sbjct: 481 SKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQV
Sbjct: 541 LKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQV 594
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/594 (88%), Positives = 554/594 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D N RE++P DNGFLKG Q P SGS V KGF+GKDALSYANILRS
Sbjct: 1 MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE LE DSGNVEA+IGKGICLQMQNM RLAFDSF+EA+KLDP+NACA T
Sbjct: 61 RNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERLAFDSFAEAIKLDPENACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YDALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV YYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKF+MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQAT 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRD G+I++
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDVGNITM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLF+AHR+WG+RFMRLY Q+TSWDN
Sbjct: 421 AISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQFTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
K PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NY VVVYSAVVK+DAKT RFREKV
Sbjct: 481 PKVPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KKGG+WRDIYGIDEKKVA+M+REDK+DILVELTGHTANNKLGMMAC+PAPVQV
Sbjct: 541 LKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHTANNKLGMMACRPAPVQV 594
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/598 (88%), Positives = 558/598 (93%), Gaps = 4/598 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D + RE++ ++DNGFLKG Q GTSGSPV KGFEGKDALSYANILRS
Sbjct: 1 MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE VLEKDSG VEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA T
Sbjct: 61 RNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTD GTKVKLEGDI+QGVAYYKKALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ-- 358
DAMYNLGVAYGEMLKF+MAIVFYELAF+FNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 301 DAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQAN 360
Query: 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG
Sbjct: 361 SDTSLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAG 420
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
+IS+AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG+RFMRLY QYT
Sbjct: 421 NISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYT 480
Query: 477 SWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRF 536
SWDN K P+RPLVIGYVSPDYFTHSVSYFIEAPLVYH Y NYKVVVYSAVVK DAKT RF
Sbjct: 481 SWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRF 540
Query: 537 REKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+EKV+K+GGIWRDIYGIDEKKVA MVREDK+DILVELTGHTANNKLGMMAC+PAPVQV
Sbjct: 541 KEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQV 598
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/594 (88%), Positives = 557/594 (93%), Gaps = 2/594 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EK+V NGR+R+PV NGF K S +S S + G K FEGKDALSYANILRS
Sbjct: 1 MAWTEKEVGNGRDREPVGGNGFSK--VSQTSSSTSSTSPGCLPKKFEGKDALSYANILRS 58
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALA+YE +LEKD+GNVEAHIGKGICLQMQNMGRLAF+SFSEA++ DPQN CA T
Sbjct: 59 RNKFADALAMYENILEKDNGNVEAHIGKGICLQMQNMGRLAFESFSEAIRQDPQNLCALT 118
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
H GILYKDEGRL+EAAESY KAL D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 119 HLGILYKDEGRLLEAAESYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 178
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 179 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGD 238
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA
Sbjct: 239 LESAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 298
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+A
Sbjct: 299 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLA 358
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+
Sbjct: 359 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISM 418
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG+DDKLFEAHRDWG+RFMRLY QYTSWDN
Sbjct: 419 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGNDDKLFEAHRDWGRRFMRLYPQYTSWDN 478
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLV+GYVSPDYFTHSVSYFIEAPLV HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 479 PKDPERPLVVGYVSPDYFTHSVSYFIEAPLVNHDYANYKVVVYSAVVKADAKTIRFRDKV 538
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQV
Sbjct: 539 LKRGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQV 592
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/597 (87%), Positives = 558/597 (93%), Gaps = 4/597 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKG---FEGKDALSYANI 57
MAW +KD NG+E DPV +NGFL Q P TSGS +A G+T +G FE K+ +SYANI
Sbjct: 1 MAWTDKDGCNGKEGDPVVENGFLNCSQPSPSTSGSLLA-GATPEGGKSFEVKETISYANI 59
Query: 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117
LRSRNKF DAL+LYE VL+KD+ NVEAHIGKGICLQM+NMGRLAFDSF+EA+KLD +NAC
Sbjct: 60 LRSRNKFSDALSLYETVLDKDARNVEAHIGKGICLQMKNMGRLAFDSFTEAIKLDSENAC 119
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A THCGILYKDEGRL EAAESY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+
Sbjct: 120 ALTHCGILYKDEGRLREAAESYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGL 179
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
QKYYEALK DPHYAPAYYNLGVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKN
Sbjct: 180 QKYYEALKTDPHYAPAYYNLGVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKN 239
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+QG+AYYKKALYYNW
Sbjct: 240 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDQGIAYYKKALYYNW 299
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY
Sbjct: 300 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 359
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
QMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+
Sbjct: 360 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGN 419
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
IS+AIDAYEQCLKIDPDSRNAGQNRLLAMNYI+EG DDKLF AHRDWG+RFMRL SQ+TS
Sbjct: 420 ISMAIDAYEQCLKIDPDSRNAGQNRLLAMNYIHEGQDDKLFVAHRDWGRRFMRLSSQHTS 479
Query: 478 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFR 537
WDN KDPERPLVIGYVSPDYFTHSVSYFIEAPL +H+Y YKVVVYSAVVKADAKTIRFR
Sbjct: 480 WDNLKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHEYAKYKVVVYSAVVKADAKTIRFR 539
Query: 538 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KV+KKGGIWRDIYGIDEKKVA++VREDKIDILVELTGHTANNKLG MAC+PAPVQV
Sbjct: 540 DKVLKKGGIWRDIYGIDEKKVASIVREDKIDILVELTGHTANNKLGTMACRPAPVQV 596
|
Source: Rosa lucieae Species: Rosa lucieae Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195423963|gb|ACF96937.1| SPINDLY [Sinningia speciosa] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/594 (87%), Positives = 547/594 (92%), Gaps = 1/594 (0%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MA K+V + + RD + D LK Q P SP+ G K EGKDALSYANILRS
Sbjct: 1 MASPGKNVGSVKGRDSLDDQASLKEGQPSPDIR-SPLGSGPIKKSLEGKDALSYANILRS 59
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKD +VEAHIGKGICLQMQN+GRLA +SF+EAV+LDPQNACA T
Sbjct: 60 RNKFVDALAVYETVLEKDGESVEAHIGKGICLQMQNLGRLACESFAEAVRLDPQNACALT 119
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL EAAE Y KAL ADPSYK AAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 120 HCGILYKDEGRLAEAAEMYQKALKADPSYKLAAECLAIVLTDLGTSLKLAGNTQEGIQKY 179
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 180 YEAIKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 239
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN GVAYYKKALYYNWHYA
Sbjct: 240 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINHGVAYYKKALYYNWHYA 299
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA
Sbjct: 300 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 359
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISL
Sbjct: 360 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISL 419
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AI+AYEQCLKIDPDSRNAGQNRLLAMNYINE +DDKL+EAHRDWG+RFMRL+ QYTSWDN
Sbjct: 420 AIEAYEQCLKIDPDSRNAGQNRLLAMNYINETNDDKLYEAHRDWGRRFMRLFPQYTSWDN 479
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHD+ NYKVVVYSAVVKADAKT RFR+KV
Sbjct: 480 IKDPERPLVIGYVSPDYFTHSVSYFIEAPLIYHDHVNYKVVVYSAVVKADAKTNRFRDKV 539
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+K GG WRD+YGIDEKKVA+MVREDKIDILVELTGHTANNKLGMMAC+PAPVQV
Sbjct: 540 LKHGGTWRDVYGIDEKKVASMVREDKIDILVELTGHTANNKLGMMACRPAPVQV 593
|
Source: Sinningia speciosa Species: Sinningia speciosa Genus: Sinningia Family: Gesneriaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/595 (87%), Positives = 551/595 (92%), Gaps = 4/595 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW E D +NGRE+ V +NGFLK S P + GS GS K EGKD +SYANILR
Sbjct: 1 MAWTEDSDGNNGREK-LVGENGFLK--VSEPSSDGSVGDGGSVSKRCEGKDDVSYANILR 57
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALALYE VLE D GNVEA IGKGICLQMQNMGRLAF+SF+EA++LDPQNACA
Sbjct: 58 SRNKFVDALALYERVLESDGGNVEALIGKGICLQMQNMGRLAFESFAEAIRLDPQNACAL 117
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYKDEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQK
Sbjct: 118 THCGILYKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQK 177
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRG
Sbjct: 178 YFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRG 237
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299
DLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI+ GVA+YKKALYYNWHY
Sbjct: 238 DLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIDHGVAFYKKALYYNWHY 297
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+
Sbjct: 298 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQL 357
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+
Sbjct: 358 ALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIA 417
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
LAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLYSQ+TSWD
Sbjct: 418 LAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQFTSWD 477
Query: 480 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK 539
N+KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHDY NYKVVVYSAVVKADAKTIRFREK
Sbjct: 478 NSKDPERPLVIGYVSPDYFTHSVSYFIEAPLLYHDYTNYKVVVYSAVVKADAKTIRFREK 537
Query: 540 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
V+KKGGIW+DIYG DEKKVA MVRED++DIL+ELTGHTANNKLGMMAC+PAPVQV
Sbjct: 538 VLKKGGIWKDIYGTDEKKVADMVREDQVDILIELTGHTANNKLGMMACRPAPVQV 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/594 (86%), Positives = 554/594 (93%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M EKD S+G+E PV++NGFL+G QS +S S V++ S K EGKD L +ANILRS
Sbjct: 1 MERTEKDDSSGKEIVPVRENGFLQGSQSSSQSSSSLVSIDSAEKKVEGKDGLFFANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DAL LYE VLEKD N+EAHIGKGICLQMQNM + AF+SF+EA++LDPQNACA T
Sbjct: 61 RNKFSDALVLYEKVLEKDGDNLEAHIGKGICLQMQNMIKPAFESFAEAIRLDPQNACAFT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYK+EGRLVEAAESY KAL DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKY
Sbjct: 121 HCGILYKEEGRLVEAAESYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK+ALYYNWHYA
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKRALYYNWHYA 300
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEACNNLGVIYKD+DNLDKAVECYQ+A
Sbjct: 301 DAMYNLGVAYGEMLKFDTAIVFYELAFHFNPHCAEACNNLGVIYKDQDNLDKAVECYQLA 360
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVL+RDAG+I +
Sbjct: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEM 420
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
A+DAYE+CLKIDPDSRNAGQNRLLAMNY +EGH+DKL+EAHRDWG+RFMRLY QYTSWDN
Sbjct: 421 AVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKLYEAHRDWGRRFMRLYPQYTSWDN 480
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 540
KDPERPLVIGYVSPDYFTHSVSYF+EAPLV+HDY NYKVVVYSAVVKADAKTIRFR+KV
Sbjct: 481 PKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKV 540
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQV
Sbjct: 541 LKQGGVWRDIYGIDEKKVASMVREDKVDILVELTGHTANNKLGMMACRPAPVQV 594
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/596 (85%), Positives = 550/596 (92%), Gaps = 5/596 (0%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLP-GTSGSPVAVGSTLKGFEGKDALSYANIL 58
MAW E D +NGRE+ V +NGFL + P G+ G V+V + +EGKD + +ANIL
Sbjct: 1 MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTR---YEGKDDVLFANIL 57
Query: 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
RSRNKFVDALALYE VLE D GNVEA +GKGICLQMQNMGRLAF+SF+EA+++DPQNACA
Sbjct: 58 RSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACA 117
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
THCGILYKDEG LVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQ
Sbjct: 118 LTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQ 177
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
KY+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNR
Sbjct: 178 KYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNR 237
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
GDLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN+GVA+YKKAL+YNWH
Sbjct: 238 GDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWH 297
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ
Sbjct: 298 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 357
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
+AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I
Sbjct: 358 LALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDI 417
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
SLAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLY Q+TSW
Sbjct: 418 SLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSW 477
Query: 479 DNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE 538
DN+KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY NYKV+VYSAVVKADAKTIRFRE
Sbjct: 478 DNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFRE 537
Query: 539 KVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
KV+KKGGIW+DIYG DEKKVA MVR+D++DIL+ELTGHTANNKLGM+AC+PAPVQV
Sbjct: 538 KVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQV 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| TAIR|locus:2080722 | 914 | SPY "SPINDLY" [Arabidopsis tha | 0.989 | 0.644 | 0.799 | 4.1e-262 | |
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.652 | 0.397 | 0.297 | 1.6e-45 | |
| WB|WBGene00003858 | 1151 | ogt-1 [Caenorhabditis elegans | 0.660 | 0.341 | 0.271 | 1e-40 | |
| UNIPROTKB|O18158 | 1151 | ogt-1 "UDP-N-acetylglucosamine | 0.660 | 0.341 | 0.271 | 1e-40 | |
| UNIPROTKB|F1NX56 | 1035 | OGT "Uncharacterized protein" | 0.620 | 0.356 | 0.266 | 2.2e-38 | |
| FB|FBgn0261403 | 1059 | sxc "super sex combs" [Drosoph | 0.620 | 0.348 | 0.268 | 1.6e-36 | |
| ZFIN|ZDB-GENE-030131-9631 | 1062 | ogt.1 "O-linked N-acetylglucos | 0.8 | 0.448 | 0.253 | 1.1e-34 | |
| RGD|62060 | 1036 | Ogt "O-linked N-acetylglucosam | 0.798 | 0.458 | 0.252 | 1.4e-34 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.798 | 0.454 | 0.252 | 1.5e-34 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.798 | 0.458 | 0.252 | 2.5e-34 |
| TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2522 (892.8 bits), Expect = 4.1e-262, P = 4.1e-262
Identities = 475/594 (79%), Positives = 511/594 (86%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYA
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYA 295
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMA
Sbjct: 296 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMA 355
Query: 361 LSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISL 420
LSIKPNF+QSLNNLGVVYTVQG NPTYAEA+NNLGVLYRDAG+I++
Sbjct: 356 LSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITM 415
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN
Sbjct: 416 AIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDN 475
Query: 481 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKV 540
KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY Y T RFR+KV
Sbjct: 476 LKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKV 535
Query: 541 MKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQV
Sbjct: 536 LKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQV 589
|
|
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 121/407 (29%), Positives = 182/407 (44%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
AN + + A+ Y I +E +A + GRL A +A+ L+
Sbjct: 128 ANAWKEKGDTDRAIRYYLIAIELRPNFADAW--SNLASAYMRKGRLSEATQCCQQALSLN 185
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P AH++ G L K +G + EA Y +A+ P++ AI ++L +G+
Sbjct: 186 PLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF-------AIAWSNLAGLFMESGD 238
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+Q Y EA+K+ P + AY NLG VY L + A+ CY+ A RP A A+ N+
Sbjct: 239 LNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIA 298
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
IY +G L+ AI Y++ L+ P F A NN+ AL D+G +++ V Y +
Sbjct: 299 SIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR-------VDEAVRCYNQC 351
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
L ++ AM NLG Y E A ++ + NNL +IYK + N
Sbjct: 352 LALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSD 411
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLY 412
A+ CY L I P + +L N G Y G PT AEA+ NL Y
Sbjct: 412 AISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAY 471
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-DKLF 458
+D+G + AI +Y+Q L + PD A N L + + D K+F
Sbjct: 472 KDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMF 518
|
|
| WB|WBGene00003858 ogt-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| UNIPROTKB|O18158 ogt-1 "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 113/416 (27%), Positives = 191/416 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + + DAL Y++ ++ ++A+I L A ++ A++++P
Sbjct: 201 NYYKEKGQLQDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF-------AVAWSNLGCVFNSQGEIWL 313
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A +A + N+ +Y
Sbjct: 314 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLACVY 373
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y++ + + P+F A N+A AL + G+ V+ E Y KAL
Sbjct: 374 YEQGLIDLAIDTYKKAIDLQPHFPDAYCNLANALKEKGSVVEAE-------QMYMKALEL 426
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD+ NL E K + A Y A P A A +NL I + + L+ A+
Sbjct: 427 CPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASILQQQGKLNDAIL 486
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G G NP +A+A++NL +++DA
Sbjct: 487 HYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNRAIQINPAFADAHSNLASIHKDA 546
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471
G+++ AI +Y LK+ PD +A Y N H ++ D+ KR +L
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDA---------YCNLAHCHQIICDWNDYDKRVRKL 593
|
|
| UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 102/383 (26%), Positives = 174/383 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 146
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 147 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 199
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL K +G + + Y AL
Sbjct: 260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-------KEKGSVAEAEECYNTALRL 312
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 313 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 372
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I P F+ + +N+G NP +A+A++NL +++D+
Sbjct: 373 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 432
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
G+I AI +Y LK+ PD +A
Sbjct: 433 GNIPEAIASYRTALKLKPDFPDA 455
|
|
| FB|FBgn0261403 sxc "super sex combs" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 103/383 (26%), Positives = 173/383 (45%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +AL Y + ++ +I L A ++ A++ +P
Sbjct: 126 NVFKERGQLQEALDNYRRAVRLKPDFIDGYINLAAALVAARDMESAVQAYITALQYNPDL 185
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P + A+ ++LG G
Sbjct: 186 YCVRSDLGNLLKALGRLEEAKACYLKAIETCPGF-------AVAWSNLGCVFNAQGEIWL 238
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P A + N+ +Y
Sbjct: 239 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLSPNNAVVHGNLACVY 298
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + PNF A N+A AL K +G + + Y AL
Sbjct: 299 YEQGLIDLAIDTYRRAIELQPNFPDAYCNLANAL-------KEKGQVKEAEDCYNTALRL 351
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
++AD++ NL E + A Y A P A A +NL + + + L +A+
Sbjct: 352 CSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASVLQQQGKLKEALM 411
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDA 415
Y+ A+ I+P F+ + +N+G NP +A+A++NL +++D+
Sbjct: 412 HYKEAIRIQPTFADAYSNMGNTLKELQDVSGALQCYTRAIQINPAFADAHSNLASIHKDS 471
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
G+I AI +Y LK+ PD +A
Sbjct: 472 GNIPEAIQSYRTALKLKPDFPDA 494
|
|
| ZFIN|ZDB-GENE-030131-9631 ogt.1 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 131/517 (25%), Positives = 232/517 (44%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAGYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G++ A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVQLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWG-KRFMRLYSQ-YTSWDNTKDPERPLVIGYVSPDY 497
+ Y ++ G + E H + + L+ Y + K L +GY+S D+
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINALHKPAYEHPKDLKASSGRLRVGYISSDF 565
Query: 498 FTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-EK 556
H S+ +++ H+ + + FR KVM + + D+ I
Sbjct: 566 GNHPTSHLMQSIPGMHNSEKFEVFCYALSPDDGT---NFRVKVMAEAHHFIDLSQIPCNG 622
Query: 557 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 659
|
|
| RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 131/518 (25%), Positives = 233/518 (44%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 157 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 216
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 217 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 270 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 324
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 325 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 441
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 442 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSV 495
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 496 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 554
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 555 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 611
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 612 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 649
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 131/518 (25%), Positives = 233/518 (44%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 226
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 227 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 280 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 334
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 335 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 392 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 451
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 452 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRLPSV 505
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 564
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 565 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 621
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 622 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 659
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 131/518 (25%), Positives = 233/518 (44%)
Query: 94 MQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
++ +GRL A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 157 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 216
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A +LG LK A + Y AL + P++A + NL VY E D A+
Sbjct: 217 A-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 269
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 270 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA----- 324
Query: 272 LGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+K E G+I + V Y+KAL +A A NL + K A++ Y+ A +
Sbjct: 325 ---NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 381
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 382 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 441
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRLLAM 446
P + +AY NL A + + D Y++ +K + + +NRL ++
Sbjct: 442 YRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 495
Query: 447 N------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYVSPD 496
+ Y ++ G + E H + + + + +++ KD + L +GYVS D
Sbjct: 496 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYVSSD 554
Query: 497 YFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-E 555
+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 555 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCN 611
Query: 556 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ 593
K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 612 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQ 649
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82039 | SPY_PETHY | 2, ., 4, ., 1, ., - | 0.8804 | 0.9983 | 0.6373 | N/A | no |
| Q8LP10 | SPY_EUSER | 2, ., 4, ., 1, ., - | 0.8310 | 0.9277 | 0.6013 | N/A | no |
| Q96301 | SPY_ARATH | 2, ., 4, ., 1, ., - | 0.8451 | 0.9899 | 0.6444 | yes | no |
| Q6YZI0 | SPY_ORYSJ | 2, ., 4, ., 1, ., - | 0.7891 | 0.9647 | 0.6192 | yes | no |
| Q8RVB2 | SPY_SOLLC | 2, ., 4, ., 1, ., - | 0.8737 | 0.9983 | 0.6380 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 595 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-22 | |
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 8e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-18 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-16 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-16 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-15 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 7e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-10 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 8e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 8e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 8e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-08 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-08 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-07 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 6e-07 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-06 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 2e-06 | |
| PRK12370 | 553 | PRK12370, PRK12370, invasion protein regulator; Pr | 2e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 4e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 6e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-05 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 2e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 4e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 4e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 9e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 1e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-04 | |
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 2e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 2e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 3e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 4e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 4e-04 | |
| PRK11189 | 296 | PRK11189, PRK11189, lipoprotein NlpI; Provisional | 4e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 5e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 5e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 6e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 7e-04 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 7e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 8e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 8e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.001 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.001 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 0.002 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.003 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.004 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.004 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.004 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 104/418 (24%), Positives = 160/418 (38%), Gaps = 50/418 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A + + N+F +A AL + VL D GNV+A + KG L LA ++ +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL-AIVLTDLGTSLKLA 170
P N + + G E AE + AL P A L A+V +
Sbjct: 223 RPNNIAVLLALATILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKALV------DFQ-K 274
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA---LGCYEKAA----LERPM 223
N +D + +ALK P Y PA G +L + A L K A R +
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334
Query: 224 YAEAYCNM---------------------------GVIYKNRGDLESAIACYERCLAVSP 256
A + G Y GD E A + + P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
E A + ++ L GD ++ +A + A + A L ++Y +F
Sbjct: 395 --ENAAARTQLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376
D A+ + P A N LG IY + +L KA E ++ ALSI+P+F + NL
Sbjct: 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507
Query: 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +G D A + EK + +P A L LY G+ A+ E+ +++P
Sbjct: 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 8e-22
Identities = 68/302 (22%), Positives = 111/302 (36%), Gaps = 46/302 (15%)
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 375
+A + + NP A NL + A+ ++A + P+ ++ L +L
Sbjct: 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143
Query: 376 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 420
Y + G+ A +E+A+ P Y L ++ S
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203
Query: 421 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
L DP A N+LL + N +
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245
Query: 475 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 532
+ D + L +GY+S D +H+V + + YHD ++V YS DA
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305
Query: 533 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592
R V K W I +D+ ++A +R D IDILV+L GHT + + + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361
Query: 593 QV 594
QV
Sbjct: 362 QV 363
|
Length = 620 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-21
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
EA NLG +Y + D+A+E Y+ AL + P+ + + NL Y GK + A E EKA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ +P A+AY NLG+ Y G A++AYE+ L++DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 7e-20
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L +LG G+ + ++ Y +AL++DP A AYYNL Y +L +Y+ AL YEKA
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
P A+AY N+G+ Y G E A+ YE+ L + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 9e-20
Identities = 104/440 (23%), Positives = 148/440 (33%), Gaps = 83/440 (18%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------- 114
F A E D N A GI Q A A +LDP+
Sbjct: 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
Query: 115 --------------------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
NA H G +Y +G L +A E++ KALS +P
Sbjct: 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ PAA LA + D+ GN D IQ++ + L IDP A L +Y +
Sbjct: 498 FFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
A+ EKAA P E + Y +G L+ A+A +P + A
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWL 605
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ LG GD+N+ V+ +KK L A A+ L AY M + AI + A
Sbjct: 606 M--LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663
Query: 329 FNPHCAEACNNLGVIYKDRDNLD----------------------------------KAV 354
P EA L + + A+
Sbjct: 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ Y+ AL P+ SQ+ L G A + +E + +P A L LY
Sbjct: 724 QAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
Query: 415 AGSISLAIDAYEQCLKIDPD 434
AI Y+ +K PD
Sbjct: 783 QKDYDKAIKHYQTVVKKAPD 802
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 4e-19
Identities = 96/415 (23%), Positives = 150/415 (36%), Gaps = 20/415 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP 113
A IL +F +A + +L+K + AH K + Q +N A ++ +A+K P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAP 292
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G G L +A + ++ L P+ A LA + L+L G
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRV 345
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ I AL +DP A LG Y L ++ A KA P A A +G+
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK-KA 292
++GD AIA E + P A + ++ G K + A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
+N LG Y A +E A P A NL I N D
Sbjct: 466 SLHNL--------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
A++ ++ L+I P +++ L +Y G + A +EKA NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 467
G + A+ + PDS A +L + G +K + +
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
AL +LG GD ++ + YY+KAL + ADA YNL AY ++ K++ A+ YE A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+P A+A NLG+ Y ++A+E Y+ AL + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 5e-18
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 18/345 (5%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
S A+ LDP + A + G Y G +AAE KA DP A T LG
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGI 405
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
S G+ + I A ++DP A L + Y Q+D AL +K ++P A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQ 284
+ +G IY +GDL A +E+ L++ P+F A N+A I + EG+ +
Sbjct: 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ--------EGNPDD 517
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ ++K L + A+ L Y + A+ + E A NP E L Y
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ L KA+ A P+ ++ LG G ++ A +K +A P A A
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMN 447
L Y + + AI + ++ L++ PD+ A G +LL
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+A+ NLG Y ++ +D A+ +YE A +P A+A NL Y ++A+E Y+ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
L + P+ +++ NLG+ Y GK + A E EKA+ +P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (195), Expect = 2e-16
Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGV-VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGV 233
+ EAL A A G+ + L + AL E+A P A + +
Sbjct: 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
G LE A+ E+ L + N+A AL +LG ++ G + + +KAL
Sbjct: 68 ALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDN 349
A E+ ++ A+ YE A +P AEA LG + +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 350 LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++A+E + AL + P+ +++L NLG++Y GK + A E EKA+ +P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
+L + G A++A E+ L++DPD N G LL + E
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 3e-16
Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 16/379 (4%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L+ A + +A+A E E + +E + + + A +EA
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P + A G G L +A S+ K L+ P A ++L D +K
Sbjct: 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALAL---LLLADAYAVMK--- 649
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N I AL++ P A L + + ++A + + P A +
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
G +Y + D +AI Y + L +P+ + A L + G+ + V +
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK--------LHRALLASGNTAEAVKTLEA 761
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
L + + A L Y +D AI Y+ P A NNL +Y + +
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820
Query: 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
+A+E + AL + PN L+ LG + +G+ D A ++ KA+ P A +L +
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
Query: 412 YRDAGSISLAIDAYEQCLK 430
G + A ++ L
Sbjct: 881 LLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-15
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A NLG +Y +L YD AL YEKA P A+AY N+ Y G E A+ YE+ L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ P+ A N+ +A LG + + +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A L + Y E ++A + A +P A L + Y+ L+KA + ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 417
AL++ PN LNN G QGK + A + E+AI P A + N G+ AG
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
A + L+IDP + LA Y G
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 102/440 (23%), Positives = 161/440 (36%), Gaps = 57/440 (12%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E I +N + A A++ DP +A A G +Y G A + K
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 142 ALSADPS----------------------------YKPAAECLAIVLTDLGTSLKLAGNT 173
ALS E A +L G + G
Sbjct: 82 ALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQL 141
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ + Y +AL IDP A L + ++D A ++ P +A G
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 234 IYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDL-GTKVKLEGDI----NQG 285
+ + G++E A+A Y + +A+ PN +A + I + + + + N
Sbjct: 202 LLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
Query: 286 VAYYKKAL--YYNWHYADAMYNLGVA------YGEMLKFDMAIVFY----ELAF-HFN-- 330
+A+Y KAL + +Y DA L A Y L A + E A+ + N
Sbjct: 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321
Query: 331 ----PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+ +A L I +D+A+ AL + P+ +L+ LG Y G +
Sbjct: 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
AAE + KA +P A A LG+ G S AI E ++DP+ A LL +
Sbjct: 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD--LLLIL 439
Query: 447 NYINEGHDDKLFEAHRDWGK 466
+Y+ G DK A + K
Sbjct: 440 SYLRSGQFDKALAAAKKLEK 459
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-13
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ L+ N+ + +AL YE LE D N +A+ A + + +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
++LDP NA A+ + G+ Y G+ EA E+Y KAL DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G LY G EA E Y KAL DP A +L + G ++ ++ Y +
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL++DP A AYYNLG+ Y +L +Y+ AL YEKA
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-13
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
++L NLG +Y G D A E EKA+ +P A+AY NL Y G A++ YE+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
L++DPD+ A L + Y G ++ EA
Sbjct: 61 LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 27/251 (10%)
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMA 266
C +++ E + A Y + ++AI + L PN F + K +A
Sbjct: 16 ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYEL 325
GD +KAL + + L AY KF +
Sbjct: 69 ------------LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ AE G+ Y L+ A + Y+ AL+I P + L + + + D
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +I++ + A+P +A G L G+I LA+ AY + + + P++
Sbjct: 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
Query: 446 MNYINEGHDDK 456
+ I G ++
Sbjct: 237 L--IEAGEFEE 245
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-10
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 426
+++L NLG G D A E EKA+ +P AEAY NL + Y G A++ E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 427 QCLKIDP 433
+ L++DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-10
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 247
A A NLG +L YD A+ YEKA P AEAY N+ + Y G D E A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 248 YERCLAVSP 256
E+ L + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A L + Y + + A E A +P A Y+ D A E Y+
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 416
ALS+ PN LNN G QG+ + A + E+A+A P Y ++ NLG+ AG
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
A + ++ L++DP LA + G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187
|
Length = 250 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-10
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 392
AEA NLG + D+A+E Y+ AL + P+ +++ NL + Y GK + A E +E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 393 KAIAANP 399
KA+ +P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
S A + L G+ + + +AL+ DP AY L + Y +L +
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ A + +A P + N G +G E A+ +E+ + P + A
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+L + G GD ++ Y +AL + +++ L
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+A ++ +A++ DP + A+ + Y+ G L +A +S+ +AL+ +P+
Sbjct: 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GD 100
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYE 215
VL + GT L G + +Q++ +A++ DP Y A + N G+ + +D A
Sbjct: 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A P E+ + +Y RG + A A ER
Sbjct: 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-09
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 239
P A A NL +V L YD AL EKA + P A A N+ +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 240 DLESAIACYERCLAVSPN 257
D + A+ E+ LA+
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 417
P+ + +LNNL +V G D A E++EKA+ +P A A NNL LY G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 418 ISLAIDAYEQCLKIDPD 434
A++ E+ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + + Y +GDLE A ++ L P+ +A +A+ LG ++ +
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEK 83
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+++AL N + D + N G + K++ A+ +E A
Sbjct: 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-----------------I 126
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+D P + Q SL N G+ G D A + + +A+ +P
Sbjct: 127 ED------------------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQ 427
E+ L LY G A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
+ LE D + A++ + Q A DSF A+ L+P N + G +G+
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY-EALKIDPHY 190
+A + + +A+ DP Y A L + G AG+ D +KY AL+IDP
Sbjct: 115 YEQAMQQFEQAIE-DPLY----PQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQR 168
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK 216
+ L +Y QY A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 382
+P A A NNL ++ + + D+A+E + AL + P +++LNNL +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 383 KMDAAAEMIEKAIAANP 399
D A E +EKA+A
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL YE+A LE +Y NMG+IY + G+ + A+
Sbjct: 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y + L ++P A NN+A+ G K + GD ++ A + KA Y W A +
Sbjct: 95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150
|
Length = 172 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
D A + Y ++G L A E+ KAL DP A LA+ L
Sbjct: 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----- 78
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---A 225
G + + AL ++P+ N G + +Y+ A+ +E+ A+E P+Y A
Sbjct: 79 --GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYPQPA 135
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ N G+ GD + A R L + P + +A
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
L IGYVS D+ H S+ +++ H+ +V Y+ + D T FR KVM + +
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57
Query: 548 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQV 594
D+ I K A + +D I ILV + G+T + + A +PAP+QV
Sbjct: 58 VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQV 105
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 13/185 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A L + Y E + A +KA P AY + + Y+ G+LE A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA----LYYNWHYADAMYNL 306
L ++PN NN GT + +G Q + +++A LY A ++ N
Sbjct: 91 ALTLNPNNGDVLNN-------YGTFLCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENA 141
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ + FD A + A +P E+ L +Y R A +
Sbjct: 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
Query: 367 FSQSL 371
++SL
Sbjct: 202 TAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
EA + G A + + +A++LDP NA A+ + Y G+ EA E Y KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
L DP A +LG + G ++ ++ Y +AL++DP+
Sbjct: 61 LELDPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA N+G GD + AI YE+ L + P+ A N+A+A LG + +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE------E 56
Query: 285 GVAYYKKAL 293
+ +KAL
Sbjct: 57 ALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-07
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 356
A+A+ NLG A ++ +D AI YE A +P AEA NL + Y K + ++A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 357 YQMALSIKP 365
+ AL + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-------------- 384
N+G+IY DKA+E Y AL + P +LNN+ V+Y +G+
Sbjct: 77 NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136
Query: 385 DAAAEMIEKAIAANP-TYAEAYNNL 408
D AAE ++AI P Y EA N L
Sbjct: 137 DKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
LQ + A + +A++ DP AH Y+ G A ESY KALS P+
Sbjct: 46 LQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYD 208
VL + G L G ++ +Q++ AL DP Y + NLG+ + Q+D
Sbjct: 103 -----GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A ++A P + A + ++ GD A ER
Sbjct: 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A A N+ ++ + GD + A+ E+ L ++ A AL +L G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 281 DINQGVAYYKKAL 293
D ++ + Y +KAL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 214
A L +LG +L G+ + I+ Y +AL++DP A AYYNL + Y +L Y+ AL
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 215 EKA 217
EKA
Sbjct: 62 EKA 64
|
Length = 69 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A+A NLG Y D+A+E Y+ AL + PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A+A N+G Y G + A+ YE+ L ++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 384
N+G+I+ KA+E Y AL P Q+LNN+ V+ +G+
Sbjct: 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136
Query: 385 DAAAEMIEKAIAANPT-YAEAYNNL 408
D AAE ++AIA P Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 331 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P+CA A L + I+ ++ + KA E A + N Q+L LG++ T+ +
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++A +P A+ G AG + A+ +CLK+DP AG +L +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415
Query: 447 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 476
Y + G DD + L SQ+
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437
|
Length = 553 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 208
LA L +L L+ G+ + ++ +AL++ P A A NL +Y L YD
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 209 TALGCYEKA 217
AL EKA
Sbjct: 64 EALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G Y GD + A+ YE+ L + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (112), Expect = 6e-06
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 11/212 (5%)
Query: 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI-CLQMQN 96
A+ L + L+ +L + K+ +AL L E L D A + L
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 97 MGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
A + + +A++LDP + A A G L + GR EA E KAL +P A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
L +LG G ++ ++ Y +AL++DP A A YNL ++ EL +Y+ AL
Sbjct: 205 ------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
Query: 214 YEKA-ALERPMYAEAYCNMGVIYKNRGDLESA 244
EKA L+ +Y + ++ + LE A
Sbjct: 259 LEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG Y + D+A+E Y+ AL + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ + +AL+ DP Y A+ Y +L + D A Y KA
Sbjct: 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P + N G +G E A+ +ER LA P + + L +LG G
Sbjct: 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY----GEPSDTLENLGLCALKAG 153
Query: 281 DINQGVAYYKKALYYN 296
+Q Y K+AL +
Sbjct: 154 QFDQAEEYLKRALELD 169
|
Length = 250 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%)
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ L T + L GD + +A +K+ + + G F A+ A
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
P EA N LG D+A Y+ AL + PN NNLG+ ++G ++ A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
++ A + + NL ++ G A D Q N + A+
Sbjct: 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241
|
Length = 257 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 27/130 (20%), Positives = 47/130 (36%)
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
+L+ A +L G + GN + + +A ++ P A+ LG
Sbjct: 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+L ++D A Y +A P N+G+ RGDLE A
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202
Query: 260 IAKNNMAIAL 269
+ N+A+ +
Sbjct: 203 RVRQNLALVV 212
|
Length = 257 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
A+A NLG Y G A++ YE+ L+++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 59/301 (19%), Positives = 110/301 (36%), Gaps = 52/301 (17%)
Query: 101 AFDSFSEAV---KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
A +F +A+ KL + A A G +G+ +EA K++ DP + A
Sbjct: 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
+ +LG D ++ ++ ALK++ YY+ ++ ++ A Y+K
Sbjct: 373 SMNLELGDP--------DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ P + ++ +GV G + S++A + RC P N L D
Sbjct: 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-- 482
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 333
+ +A+ KFD AI EL P
Sbjct: 483 ------------FDEAIE--------------------KFDTAI---ELEKETKPMYMNV 507
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N +++ + + +A + AL I P ++ + + QG +D A ++ E+
Sbjct: 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
Query: 394 A 394
A
Sbjct: 568 A 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
GV+Y G A +A+A P E +N LG+ AG+ A +A++ L++DP
Sbjct: 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
A NR +A+ Y G KL A D + Y D+ DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171
|
Length = 297 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
G D A +E A+A P AEA LG G ++ A L DPD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ Y +G +A ++ KAL DPSY A A LG LA + Y +
Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRK 94
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRG 239
AL + P+ N G + + A+ +E+A L P Y ++ N+G+ G
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAG 153
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A +R L + P F A +A GD Y ++
Sbjct: 154 QFDQAEEYLKRALELDPQFPPALLELARLH-------YKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG Y G A++ YE+ L++DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 23/181 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
L L A + Q EA K A L + Y + Y A
Sbjct: 9 SLVFSLALGACVTDPAPSRQTDRN---EAAK-------ARLQLALGYLQQGDYAQAKKNL 58
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
EKA P Y A+ Y+ G+ + A Y + L+++PN NN G
Sbjct: 59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-------YGA 111
Query: 275 KVKLEGDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ +G + + +++AL Y +D + NLG+ + +FD A + + A +
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 331 P 331
P
Sbjct: 170 P 170
|
Length = 250 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
G +AAAE+ +A+ P +A + LG AG A AYE+ L++DP+
Sbjct: 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
Query: 442 RLLAM 446
+L +
Sbjct: 69 KLAVL 73
|
Length = 287 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 352
A A+ NL + + +D A+ E A +P A A NNL +Y + D+
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 353 AVECYQMALSIKPN 366
A+E + AL+++
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A AY +G IY GD E A YE+ L + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L Y++ DKA+E Y+ L PN L L + GK A + +++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 457
PT A Y L + R A A+ A++Q L ++PD+ A + + +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 458 FEAHRDW 464
+ + D
Sbjct: 211 AKQYPDL 217
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
E A L R +LA+ + + E +G A
Sbjct: 65 EDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+A +L P + A G GR EA +Y +AL P E + +LG S
Sbjct: 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NE--PSIANNLGMS 177
Query: 167 LKLAGNTQD 175
L L G+ +D
Sbjct: 178 LLLRGDLED 186
|
Length = 257 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 38/310 (12%)
Query: 2 AWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILR 59
A +E E Q LK P+S S A L + + + A LR
Sbjct: 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLR 337
Query: 60 S-----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K ++ALA +E D +++I + A + F +A+KL+ +
Sbjct: 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + H L+ +G +A + Y K++ DP + LG + G+
Sbjct: 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIA 450
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM----QYDTALGCYEKA-ALER---PMYAE 226
+ + K P AP YN Y EL+ ++D A+ ++ A LE+ PMY
Sbjct: 451 SSMATFRRCKKNFPE-APDVYNY---YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
Query: 227 AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-EGDI 282
+ +++ + D A E+ L + P +IA MA ++ L +GD+
Sbjct: 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA--------QLLLQQGDV 558
Query: 283 NQGVAYYKKA 292
++ + +++A
Sbjct: 559 DEALKLFERA 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y A+L P E Y +GVI G+ A+ Y R LAV F AKNN+ +
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 270 TD 271
Sbjct: 61 EK 62
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
Y +AL++DP+ A AYYNL ++ L QYD AL
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Q D A+ + + E P EA+ +G ++++RG+++ AI ++ L SP+ + +
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L LG Y A + A+ ++N V GE +
Sbjct: 109 A--LQQLGRD-------------YMAAGLLD--RAEDIFNQLVDEGEFAE---------- 141
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTV 380
A L IY+ +KA++ + + + +Q L
Sbjct: 142 ---------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+D A E+++KA+ A+ A LG + G A++A E+ L+ +P+
Sbjct: 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246
|
Length = 389 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A AY LG +Y G A + YE+ L++DP++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 59/303 (19%), Positives = 90/303 (29%), Gaps = 80/303 (26%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A D F E ++ DP+ AH G L++ G V+ A H+ L P LA+
Sbjct: 54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLAL-- 110
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
LG Y D A + + E
Sbjct: 111 ----------------------------------QQLGRDYMAAGLLDRAEDIFNQLVDE 136
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAIALTDLGTKVK 277
A + IY+ + E AI ER + + EIA+ +A L +
Sbjct: 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-- 194
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
D+++ A L A + C A
Sbjct: 195 ---DVDR-----------------ARELLKKALQA-----------------DKKCVRAS 217
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
LG + + + KAVE + L P + S+ L L Y GK + +A+
Sbjct: 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277
Query: 397 ANP 399
N
Sbjct: 278 TNT 280
|
Length = 389 |
| >gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 418
AL+++P+ + + N LG+ T G DAA E + + +PTY AY N G+ LY G
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148
Query: 419 SLAIDAYEQCLKIDPD 434
LA D + DP+
Sbjct: 149 ELAQDDLLAFYQDDPN 164
|
Length = 296 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G+ Y GD E A+ YE+ L + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
+ A AL +LG + GD ++ + Y+KAL + A+A YNL +AY ++ K ++ A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 323 YELAFHFNP 331
E A +P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 352 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A+E Y+ AL ++ + S L N+G++Y G+ D A E +A+ NP A NN+
Sbjct: 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
Query: 409 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 443
V+Y G + A + ++Q +++ P++ QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L +YD AL YEKA
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKA 27
|
Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 6e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-RLAFDSFSEAVKLDP 113
N L + +A+ YE LE D N EA+ + A + +A++LDP
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G
Sbjct: 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 478
LA D + DP+ R L + Y+NE D K +A + +R + + W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203
|
Length = 297 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ EKA+ +P AEAY NL +L + G A+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 19/180 (10%)
Query: 190 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241
A A LG +Y A Y AA + AEA N+G++Y N DL
Sbjct: 72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALFNLGLMYANGRGVPLDL 129
Query: 242 ESAIACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
A+ YE+ + +A + +A + + D + + Y+KA
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
DA LG Y G A +Y+ A AC NLG++Y + + + KA
Sbjct: 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFL 245
|
Length = 292 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
AL Y + + A E LE D AH+ + Q LA +S+ +A+
Sbjct: 42 ALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L P N + G +GR EA + + +AL ADP+Y + L +LG A
Sbjct: 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL-ADPAYGEP----SDTLENLGLCALKA 152
Query: 171 GNTQDGIQKYYE-ALKIDPHYAPA 193
G D ++Y + AL++DP + PA
Sbjct: 153 GQF-DQAEEYLKRALELDPQFPPA 175
|
Length = 250 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 8e-04
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
L + D+A+ + AL+ P +++L LG QG++ AA ++ A+AA+P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 400 TYA 402
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
AEA NLG+ Y + ++A+E Y+ AL + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A +++A+ ANP +EA LG Y G + A+ +E+ L +DP S N +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341
Query: 441 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 481
LL +N Y I +G D +A+ RLY Q DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383
|
Length = 1157 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL Y +A LE Y +Y N+G+I+ + G+ A+
Sbjct: 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
Y + L +P A NNMA+ G + +GD A++ +A Y W A
Sbjct: 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146
|
Length = 168 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AEA NLG+ Y G A++AYE+ L++DP+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESY 139
N EA G L A +++ +A++LDP NA A+ + + Y G EA E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 140 HKALSADP 147
KAL DP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
AEA NLG G AI+AYE+ L++DPD+ A N A+ Y+ G D +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
++ + G EA E KAL A L +L G+ + ++ +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71
Query: 183 ALKIDP 188
AL +
Sbjct: 72 ALALRE 77
|
Length = 78 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
A A LG IY + ++A E Y+ AL + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+M+A +E + NP AE ++ LG Y G S A+ AY L++ D+
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192
|
Length = 287 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 274 TKVKLEGDINQGVAYYKKALYYNWH---YADAMYNLGVAYGEMLKFDMAI-VFYEL--AF 327
+ K E NQ L A Y + ++D A+ + L A
Sbjct: 281 IRAKYEALPNQ----QAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ 336
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
NP+ E G I + + +A+E + AL++ PN NL GK A
Sbjct: 337 PDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
++ + + +P ++ L Y + G+ + A+ A
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431
|
Length = 484 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.97 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.97 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.96 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.94 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.94 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.92 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.91 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.91 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.91 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.91 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.89 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.89 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.89 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.89 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.88 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.86 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.85 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.84 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.84 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.83 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.81 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.75 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.73 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.72 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.67 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.5 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.49 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.48 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.45 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.34 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.26 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.21 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.17 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.17 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.14 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.11 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.1 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.08 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 99.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.04 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.03 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.89 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.87 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.78 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.69 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.61 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.59 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.57 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.52 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.5 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.42 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.4 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.35 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.32 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.21 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.17 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.16 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.13 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.09 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.09 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.08 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.06 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.03 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.01 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.95 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.91 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.9 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.87 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.82 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.82 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.8 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.74 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.73 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.72 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.66 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.57 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.55 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.5 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.49 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.47 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.42 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.42 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.42 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.38 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.2 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.17 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.15 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.11 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.08 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.08 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.02 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.97 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.83 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.82 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.8 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.77 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.76 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.63 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.62 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.54 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.52 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.51 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.5 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.41 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.35 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.34 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.28 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.28 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.22 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.14 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 96.11 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.09 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.02 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.98 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.96 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.88 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.75 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.63 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.58 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.54 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.51 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.49 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.48 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.46 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.24 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.12 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.9 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.56 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.55 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.54 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.5 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.37 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.35 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.14 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.85 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 93.77 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.61 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 93.51 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 93.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.06 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.94 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 92.87 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.74 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.66 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.59 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.5 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.42 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 92.31 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.17 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.08 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.89 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.84 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.64 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.56 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.51 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 91.43 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.38 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 91.37 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.2 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.19 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.92 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 90.84 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 90.61 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.43 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 90.26 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.89 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.65 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 89.61 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 88.75 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 88.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 88.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.97 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.42 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.09 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.0 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 86.9 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 86.7 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.54 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.48 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.32 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 86.16 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.92 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.55 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 85.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.83 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.81 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.45 | |
| PF04348 | 536 | LppC: LppC putative lipoprotein; InterPro: IPR0074 | 83.32 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 82.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.28 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.09 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 81.44 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 81.37 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-93 Score=657.46 Aligned_cols=564 Identities=38% Similarity=0.539 Sum_probs=516.7
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCcccccccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 007634 13 ERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL 92 (595)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 92 (595)
+..++-..++..+.........+.. .....+.-.+.+-.+|+++..+|++++|+.+|+.++++.|++.++|.++|.++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~--a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLL--AIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhh--hhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence 3344444555544443333322222 22223345667777999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
...|+.+.|.++|..+++++|+...+...+|.++...|+..+|..+|.++++..|.... +|.++|..+..+|+
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-------awsnLg~~f~~~Ge 233 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-------AWSNLGCVFNAQGE 233 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee-------eehhcchHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999997544 48999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
...|+..|+++++++|...++|++||.+|...+.+++|+.+|.+++...|+++.++-++|.+|.++|..+-|+..|++++
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
++.|+.+.++.+++.++... |+..+|..+|.+++.+.|+.+++..+||.++.++|++++|...|.++++..|.
T Consensus 314 ~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred hcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence 99999999888888877774 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
.+.+..++|.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|+..|.+++..+|..++++.+||.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCc-----HHHHHHHHHHH--HHHHhhc-------------
Q 007634 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEAHRDWG--KRFMRLY------------- 472 (595)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~------------- 472 (595)
...|+..+|+..|+.++++.|+.+++..|++.++.++..|.. .++...+++|. ++++...
T Consensus 467 kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~ 546 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHIL 546 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHH
Confidence 999999999999999999999999999999999999999987 77788888888 3333322
Q ss_pred ---------------------cccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCCh
Q 007634 473 ---------------------SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADA 531 (595)
Q Consensus 473 ---------------------~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~ 531 (595)
+++..|.+-+.+++||||||||+||.+||++||+.+++.+||+++||||||+.+++++.
T Consensus 547 ~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t 626 (966)
T KOG4626|consen 547 RKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGT 626 (966)
T ss_pred HHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCc
Confidence 34556677778889999999999999999999999999999999999999999876554
Q ss_pred hhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCCcccC
Q 007634 532 KTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~APvq~~ 595 (595)
. ||.++.++++||+|+++++...+|..|++|+|||||+|+|||.|+|.+|||+|||||||+
T Consensus 627 ~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv~ 687 (966)
T KOG4626|consen 627 N---FRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQVM 687 (966)
T ss_pred h---HHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeEE
Confidence 3 777777888999999999999999999999999999999999999999999999999995
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=365.31 Aligned_cols=400 Identities=28% Similarity=0.432 Sum_probs=371.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEAHIGKGI 90 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~~~~la~ 90 (595)
.......+++|...++.|+|.+|.+.+..+...+| .-.+++-++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34456689999999999999999999887666554 33567788999
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~ 170 (595)
++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+ ...+|..+...
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~ 197 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAE 197 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999986655 77888889999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
|+..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+..|.+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
++.+.|++.. ++.+++.+|..+|..+-|+..|+++++..|..++++.++|..+...|+..+|+.+|.+++.+.
T Consensus 278 Al~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 278 ALNLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHhcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999998754 455677777778999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
|..+++.+++|.++..+|.+++|...|+++++..|+.+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (595)
.|..+|+...|+.+|.+|+.++|...+++.|+ +..|-..|+-.++...
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL--asi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL--ASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH--HHHhhccCCcHHHHHH
Confidence 99999999999999999999999999999985 5566666765555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=325.94 Aligned_cols=382 Identities=16% Similarity=0.178 Sum_probs=331.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..+...|..++..|+|++|+..|+++++..|+ +..+.++|.|+..+|++++|+..+.++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~------------------------------~~~~a~~------------------ 159 (595)
.+|++++|+..|..+....+..... +..++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332211 0001110
Q ss_pred --------HHHhHHHH---HHhCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 160 --------~~~l~~~~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
+..+|... ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 305 (595)
..+..+|.++...|++++|+..|+++++.+|+++..+..++.+ +...|++++|+..|++++..+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555554 455789999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHH-H
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~la~~-~ 378 (595)
+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|..... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44799999999999999999999999999999999999999999999999999887554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=330.95 Aligned_cols=405 Identities=20% Similarity=0.186 Sum_probs=329.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.++..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..+++++..+|.+... +..++..+...|++++|+..+++++...|.++..+..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888776654 4556677777888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH----------------
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------- 269 (595)
++++|+..|+++++..|.++..+..+|.++...|++++|+..++++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766655554433
Q ss_pred -----------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 270 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334556667788888888888888888776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
.+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.+++++++..|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
++|..+|+++++.+|.++.+..++ +..+...|+.+++.+..
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 888888888888888877766664 55566667666655443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=298.00 Aligned_cols=299 Identities=22% Similarity=0.317 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 282 INQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
..-++..+...+..++.++..+.. +...+...+....+.......+..+|.+..+..+++......|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555555555667777765433 466777778888888888889999999999999888888877766666555554
Q ss_pred -HHccCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 360 -ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 360 -al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+....|.+......+ +.....+|+..++...++++....|.++.+...+.....+...+. ...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~ 196 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEA 196 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hcc
Confidence 777888887665555 788888888888999999999988888766665555533333332 333
Q ss_pred CCChhhhhhHHHH-----hhhccCCCcHHHHHHHHHHHHHHHhhc---cccCCCCC-CCCCCCCeEEEEecCCcccchHH
Q 007634 433 PDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWDN-TKDPERPLVIGYVSPDYFTHSVS 503 (595)
Q Consensus 433 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~igy~s~d~~~h~~~ 503 (595)
|.+-.......+. +.++.. ++..-.....++.+...... .+++.|.. ....++|+||||+|+|++.|+|+
T Consensus 197 ~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg 275 (620)
T COG3914 197 PTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVG 275 (620)
T ss_pred chHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHH
Confidence 3333222222111 122221 23333444555555554322 23444542 23568999999999999999999
Q ss_pred HhhhhhhcccCCCceEEEEeeCC-ccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChh
Q 007634 504 YFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKL 582 (595)
Q Consensus 504 ~~~~~~~~~~d~~~fe~~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~ 582 (595)
+++.+++++|||++||||+|+.+ ++.|..+.|++..+ ++|.++.+|+|.++|++|+.|+|||||||+|||..+|+
T Consensus 276 ~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~ 351 (620)
T COG3914 276 FLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRC 351 (620)
T ss_pred HHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccch
Confidence 99999999999999999999998 66788999999988 67999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccC
Q 007634 583 GMMACQPAPVQVC 595 (595)
Q Consensus 583 ~~~a~r~APvq~~ 595 (595)
+|||.||||||||
T Consensus 352 ~v~A~RpAPiqvs 364 (620)
T COG3914 352 QVFAHRPAPIQVS 364 (620)
T ss_pred hhhhcCCCceEEe
Confidence 9999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=323.59 Aligned_cols=367 Identities=15% Similarity=0.112 Sum_probs=320.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH--------------H
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (595)
..|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2355888999999999999999999999998765 777888999999999999999999999999877665554
Q ss_pred H------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007634 199 V------------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 199 ~------------------------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (595)
. ++...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 4456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH-------------------------------------Hhhhhhhhc
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------------------------~l~~~~~~~ 279 (595)
..|++++|+..++++++..|.++..+..++..+. ..+..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998877655443322 234445566
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665 57888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+++..|++..++..+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998766443 4666779999999999999999999985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.38 Aligned_cols=412 Identities=18% Similarity=0.188 Sum_probs=332.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHH------
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA------ 84 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~------ 84 (595)
+.+....+.+|..++..|++++|+..+++++...+ +....
T Consensus 178 P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 45677889999999999999999999998865432 11100
Q ss_pred --------------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 85 --------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 85 --------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 013477888999999999999999999999999999999999999999999999999999999865
Q ss_pred HHH--HHH-----HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 151 PAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 151 ~~~--~~~-----a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
... ..+ ......+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 421 111 1123456888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 224 YAEAYCNMGVI------------------------------------------YKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 224 ~~~~~~~la~~------------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
+..++..++.+ +...|++++|+..|+++++.+|+++..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88776655544 445688888888888888888887765
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA--------------- 326 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--------------- 326 (595)
+..++. ++...|++++|+..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 498 ~~~LA~-------~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 498 TYRLAQ-------DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 544444 4444678888888888888888888887777777777777777776665542
Q ss_pred -------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 007634 327 -------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 327 -------------------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (595)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2236777778888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh----hhHHHHhhhccCCCcHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG----QNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~~ 457 (595)
|++++|+..++++++..|+++.++..+|.++...|++++|.++|++++...|+++... ..+..+..+...|+.+++
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988998888999999999999999999999999998887665422 222235556667777766
Q ss_pred HHHHHH
Q 007634 458 FEAHRD 463 (595)
Q Consensus 458 ~~~~~~ 463 (595)
...++.
T Consensus 731 ~~~y~~ 736 (1157)
T PRK11447 731 LETYKD 736 (1157)
T ss_pred HHHHHH
Confidence 655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=296.45 Aligned_cols=364 Identities=10% Similarity=-0.017 Sum_probs=328.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.....+...+..+...|++++|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..|++++..+|++... +..++.++...|++++|+..+++++...|+++.++..++ .+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcC
Confidence 999999999999999999999998876 667788888899999999999999999999998887765 488999
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 206 QYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
++++|+..++++++..|. .......++.++...|++++|+..+++++...|++...+..++.++.. .|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~e 264 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSRE 264 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCchh
Confidence 999999999999998763 344556678899999999999999999999999987766665555555 567775
Q ss_pred ----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 285 ----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 285 ----A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+..+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+...
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence 999999988888889999999999999999999999999864 3455677777777777665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=314.42 Aligned_cols=404 Identities=22% Similarity=0.225 Sum_probs=290.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
......++..+...|++++|+..+++++..+|.++..+..+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH---------------------------HHHHHhHHHHHHhCChHHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLA---------------------------IVLTDLGTSLKLAGNTQDGIQKY 180 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~l~~~~~~~~~~~~A~~~~ 180 (595)
..|++++|+..+++++...|+.......++ .++..+|.++...|++++|+..|
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666666666666665554433222111 12555677777777777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 007634 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 181 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
+++++.+|++..++..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++...|.+..
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 568 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776655
Q ss_pred HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 340 (595)
.+.. ++..+...|++++|+..+++++...|.+...+..+|.++...|++++|+..|+++++..|.++.++..+
T Consensus 569 ~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 569 PALA-------LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred HHHH-------HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4433 444445567888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (595)
|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888888888888888888888888888888888888888887778777788888888888888888
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
|+..|++++...|++ ....+ ++..+...|+..+..+..
T Consensus 722 A~~~~~~~~~~~~~~-~~~~~--l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 722 AIQAYRKALKRAPSS-QNAIK--LHRALLASGNTAEAVKTL 759 (899)
T ss_pred HHHHHHHHHhhCCCc-hHHHH--HHHHHHHCCCHHHHHHHH
Confidence 888888888887776 22222 344455555555544433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=291.95 Aligned_cols=363 Identities=20% Similarity=0.172 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~ 161 (595)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..+.++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 346778999999999999999999999999996 7789999999999999999999999999999998877 77
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~------------------------------~~~~~----------------- 194 (595)
.+|.++...|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888889999998877655433221 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
..++..+ ...+++++|+..|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
.++|.....+..++.++ ...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~-------~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMN-------LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 99999876655555544 44689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH------HH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA------YN 406 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~ 406 (595)
+..++..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++++.|+.... +.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875332 22
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHH
Q 007634 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
..+ .++...|++++|..+++++++++|++..++.. ++..+...|+.+++....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHH
Confidence 333 33445799999999999999999998876554 466777778777665443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=289.91 Aligned_cols=366 Identities=12% Similarity=0.020 Sum_probs=328.6
Q ss_pred HhCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 007634 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (595)
+++.+|+.---++...-+. ..++.......+..+...|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 4566666555555554443 2334456677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (595)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (595)
+..+++++..+|++..+ +..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999887 67778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
+++...|+++..+..++ .+...|++++|+..+++++...|...... ...++..+...|++++|+..+++++..
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887765 48899999999999999998876433211 123345556689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
.|+++.++..+|.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 9999999999999999999999999999998888888999999999999999999999999987543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=244.13 Aligned_cols=380 Identities=18% Similarity=0.172 Sum_probs=318.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..+-..|+.++..|+|++|+++|.++++..|+.+..+.+++-||...|+|++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--------------------------------CCCCHHHHHHHHHHHHH-------------
Q 007634 128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAIVLTD------------- 162 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~--------------------------------~~~~~~~~~~~a~~~~~------------- 162 (595)
.+|++++|+....-.--. .|.-+.+.. ++. ++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~s-yf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IAS-YFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HHH-HHhhccccccccccCC
Confidence 999999987654321100 011110000 000 000
Q ss_pred -------h--HHHHHHh---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 163 -------L--GTSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 163 -------l--~~~~~~~---~~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
+ +.-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 0011111 24555555555443321 112 567788899999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC
Q 007634 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297 (595)
Q Consensus 218 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (595)
++++|.+...|..+|.+|...++.++....|.++.+++|.+++.++..+++++.+ +++++|+.-|++++.++|
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDP 425 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcCh
Confidence 9999999999999999999999999999999999999999999888887777775 599999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSL 371 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~ 371 (595)
++.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++.+.|. ++..+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 55556
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 372 NNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 372 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
...|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|++++.+.....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 55555433 458999999999999999999999999999999999999999999999998865443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=279.67 Aligned_cols=410 Identities=14% Similarity=0.091 Sum_probs=339.9
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+....-....++.-.|++++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566667777888999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..++++++..|++.. + ..+|.++...|++++|+..++++++..|++..++..++.++...
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~-------~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-L-------LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999876 3 44566777789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 205 MQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
+..++|+..++++.. .|... .....+..+.. ..+++ ++|+..++.+++..|.++........+...
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999998765 54421 12222222222 22334 789999999997766555443333333333
Q ss_pred -hhhhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 007634 272 -LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345 (595)
Q Consensus 272 -l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~ 345 (595)
++. +...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++.
T Consensus 243 ~l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 332 3456899999999999998865432 344446999999999999999999999888765 456778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
..|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999988763 13567889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (595)
++...|++++|++.++++++++|++....... ++.++..++.+++....++...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999877664 5567777777776665555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=282.43 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=321.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.....+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la 198 (595)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|+.. .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 45567777778999999999987776 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAEA-------YCN-MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 199 ~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~-------~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.+.. ..+++ ++|+..++++++..|.++.. ... ++ .+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 2222 22345 78999999999764443322 222 33 3467799999999999999886543321
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------ 332 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------ 332 (595)
....++..+...|++++|+..|+++++..|.+ ......++.++...|++++|+..++++....|.
T Consensus 274 -----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 274 -----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 11113556667889999999999999888765 456778888899999999999999999988763
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 333 ---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 333 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
...++..++.++...|++++|++.+++++...|++..++..+|.++...|++++|+..+++++.++|++..
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999998654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=271.94 Aligned_cols=391 Identities=14% Similarity=0.061 Sum_probs=298.5
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
....+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..
T Consensus 38 ~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~ 117 (987)
T PRK09782 38 DYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS 117 (987)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33457788999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLK 168 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~---------------------------------~~~l~~~~~ 168 (595)
++.+ +++++|+..|+++++.+|++.++...++.. ...++.+|.
T Consensus 118 La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 118 LAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH
Confidence 8776 999999999999999999999988777765 122367788
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-------------------------------SELMQYDTALGCYEKA 217 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-------------------------------~~~g~~~~A~~~~~~a 217 (595)
.+++|++|+..+.++++..|.+......++.+| ...|+.++|...+++.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 899999999998888777665544333333333 3333333333322211
Q ss_pred --------------------------------------------------------------------------------
Q 007634 218 -------------------------------------------------------------------------------- 217 (595)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (595)
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence
Q ss_pred -------------------------------------------------HH-----------------------------
Q 007634 218 -------------------------------------------------AL----------------------------- 219 (595)
Q Consensus 218 -------------------------------------------------l~----------------------------- 219 (595)
..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 00
Q ss_pred ------------------------------------hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 220 ------------------------------------ERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 220 ------------------------------------~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
..|. ++.+++.+|.++.. ++.++|+..+.+++...|+...
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~- 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ- 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-
Confidence 1133 56677889988887 7888899988888888887532
Q ss_pred HhhHHHHH--------------------------HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 262 KNNMAIAL--------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 262 ~~~~~~~~--------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
...++.++ ..+|..+...|++++|+.+++++++..|.....+..++......|+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 22222221 2233445566777777777777777777776666666666666688
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888875 77788888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.+|+++.+++++|.++..+|++++|+.+|+++++++|++....
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 88888888888888888888888888888888888888765443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=256.66 Aligned_cols=399 Identities=22% Similarity=0.266 Sum_probs=314.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
++.++-.++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+..+|+.+.|+..|+++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 34677889999999999999999999999999999974 57889999999999999999999999999999999999988
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH------------------------------HHHHHhHHHHHH
Q 007634 123 GILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKL 169 (595)
Q Consensus 123 a~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~a------------------------------~~~~~l~~~~~~ 169 (595)
|.+-.... .+..+...+.++...++.++.+...++ ..++.+|.++..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 88877654 466788888888888888887655443 346789999999
Q ss_pred hCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESA 244 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~----~~~~A 244 (595)
+|++++|..+|.++++.++++ .-.++.+|+.++..|+++.|..+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 999999999999999999998 7888999999999999999999999999999999999999999998886 67889
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHH-------------------------------HHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
..++.++++..|.+..+|..++.++ .++|..++..|++.+|...+..++
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 9999999999999888888777654 334555677888888888888887
Q ss_pred hh-----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 294 YY-----NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 294 ~~-----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
.. +++. ....+++|.++...++++.|.+.|..+++.+|....++..+|......++..+|...++.++..
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 66 1111 2357788888888888888888888888888888777777776666677777777777777777
Q ss_pred CCCCHHHHHHHHHHHHh------------------------------------------------cCCHHHHHHHHHHHH
Q 007634 364 KPNFSQSLNNLGVVYTV------------------------------------------------QGKMDAAAEMIEKAI 395 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~------------------------------------------------~g~~~~A~~~~~~al 395 (595)
+..++.++..+|.++.. .+.+++|++.|.+++
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 66655555555544332 223455666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
..+|.+..+-..+|.++...|++.+|+..|.++.+--.++.++|.|.
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 66666666556666666666666666666666655555555555553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=257.04 Aligned_cols=395 Identities=19% Similarity=0.249 Sum_probs=340.6
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+..++.++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|..+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567789999999999999999999999999999988 788999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------HHHhHHHHH
Q 007634 124 ILYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLK 168 (595)
Q Consensus 124 ~~~~~~g----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~-------------------------------~~~l~~~~~ 168 (595)
.+|...+ ..+.|..+..++++..|.+.+++..++.+ +.++|..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 9998886 67889999999999999998888777664 345777888
Q ss_pred HhCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 169 LAGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~-----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 889999999999888876 222 1235788899999999999999999999999999999999998888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE---- 312 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~---- 312 (595)
++..+|...++.++..+..++.++..++..+ .....+..|.+-|+..++... .++.+...||++++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-------l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLH-------LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-------HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 8889999999999998888887766555444 445677777776666665432 356677788887754
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 313 --------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 313 --------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.+.+++|++.|.+++..+|.+..+-+.+|.++...|++.+|..+|.++.+...++..+|.++|.||..+|+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHh
Q 007634 385 DAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (595)
Q Consensus 385 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (595)
..|++.|+.++... .++.+++..||.++.+.|.+.+|.+...+|+.+.|.++....|+.+.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999873 356899999999999999999999999999999999999988876544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-29 Score=231.72 Aligned_cols=390 Identities=21% Similarity=0.226 Sum_probs=333.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
......|...+..|+|+.|+.+|.+++.++|.|...+.+...++..+|+|++|++.-.+.++++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH---------HHHH-hCC-------hHHHHHHHHHHHhh-----
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT---------SLKL-AGN-------TQDGIQKYYEALKI----- 186 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~---------~~~~-~~~-------~~~A~~~~~~~l~~----- 186 (595)
.|+|++|+..|.+.++.+|++......++.+...... .+.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999998887777665521100 0000 000 00000111111111
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 007634 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (595)
Q Consensus 187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~g~~~~ 209 (595)
.|. .......+|...+...++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
|++.|.+++.++ .+...+.+.+-+|+..|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999998888777777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
.+++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876655 556667777888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (595)
.+.++|.||..+|.+..|+...+++++++|+...+|..-|.++..+.+|++|.+.|+++++++|++.++.....-++.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=251.38 Aligned_cols=361 Identities=13% Similarity=0.049 Sum_probs=309.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCC---
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR--- 131 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~--- 131 (595)
....+++.+|........+..|.+...+..++......|++++|...|+++....++. ......++.+|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3455788888888888888889999999999999999999999999999998863322 2234477777766544
Q ss_pred ----------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 132 ----------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 132 ----------------------~~~---A~~~~~~~l~~~~~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
..+ +...+.+++...|. +... +..+|.++.. ++..+|+..+.+++
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 222 23334444444555 5444 7788888876 89999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
...|+.. ....+|.++...|++++|+..++++....|. ...+..+|.++...|++++|+.+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999854 4666788888999999999999998777665 4567899999999999999999999999999887544332
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 344 (595)
++......|++++|+..++++++.+|+ ...+..+|.++.+.|++++|+..|++++..+|+++.++.++|.++
T Consensus 582 -------La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 582 -------LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333333458999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+....|.+.....+++.|.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCh
Q 007634 425 YEQCLKIDPDSR 436 (595)
Q Consensus 425 ~~~al~~~p~~~ 436 (595)
+.++..++|+..
T Consensus 734 ~~r~~~~~~~~~ 745 (987)
T PRK09782 734 VGRRWTFSFDSS 745 (987)
T ss_pred HHHHhhcCccch
Confidence 999999999876
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-32 Score=257.81 Aligned_cols=104 Identities=40% Similarity=0.646 Sum_probs=90.9
Q ss_pred eEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccC-ChhhHHHHHHhhhcCCceeeCCCCC-HHHHHHHHHhC
Q 007634 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (595)
Q Consensus 488 l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 565 (595)
|||||||+||++|||++|+.+++++||+++|||+||+.++++ +..+++++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999998754 45777777765 7999999986 68999999999
Q ss_pred CCcEEEeCCCCCCCChhhhhhcCCCCcccC
Q 007634 566 KIDILVELTGHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~a~r~APvq~~ 595 (595)
+|||||||+|||.++|++|||+||||||||
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvs 106 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVS 106 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEE
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEE
Confidence 999999999999999999999999999996
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=232.80 Aligned_cols=307 Identities=20% Similarity=0.274 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
..+..+|..|.. +-+..+|+..|.+.-...++... ++..+|..|+.+++|++|..+|+.+-+..|-.....
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~w-------vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGW-------VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655554 45677999999996555555443 478889999999999999999999999999877777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
-....+++.+.+--+--.+-+..++.+|+.|+.|..+|++|.-+++++.|+++|+++++++|.+. .+|..+|.
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-------YayTLlGh 463 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGH 463 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-------hhhhhcCC
Confidence 77777888877766655666778899999999999999999999999999999999999999864 45666777
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 354 (595)
-+.....++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..|++|+.++|.++...+..|.+++..+++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|.-|..++|.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Chh
Q 007634 435 SRN 437 (595)
Q Consensus 435 ~~~ 437 (595)
-.+
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-26 Score=208.51 Aligned_cols=365 Identities=18% Similarity=0.163 Sum_probs=264.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD 128 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 128 (595)
++..|.++.+.|....|+..|..++...|-+..+|..++.+.... +........-| .+...-+.++.++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666655543221 11112221222 223333445556666
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
..+.++++.-++..... .|.+.-. -...|.+.....++++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 66677777777766666 4554433 334555666667888888888888888877666666666666666665
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
.+---+.+.+.+++.-.++...-+|+.|...++.++|+.+|+++++++|+...+|..+ |.-|...++...|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm-------GHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM-------GHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh-------hHHHHHhcccHHHHH
Confidence 5555555666677777777788888888888888888888888888888876655544 444444678888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
.|+++++++|.+..+|+.+|+.|.-++.+.=|+-+|++++...|.++..|..+|.||.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-++.-.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 88888888888888888888888888887 3455567777788888888888888888888877655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-27 Score=214.21 Aligned_cols=358 Identities=20% Similarity=0.195 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
.+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++.||...|++++.++...++++++|+...+ +++.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~RR 189 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLRR 189 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHHH
Confidence 455677888999999999999999999999999999999999999999999999999999999998877 5555
Q ss_pred HHHHHHhCChHHHHHHH------------------HHHHhh--------------CCCCH--------------------
Q 007634 164 GTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYA-------------------- 191 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~------------------~~~l~~--------------~~~~~-------------------- 191 (595)
+..+...|++.+|+.-. ++.++. .|.-|
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 56666667776665432 121111 11111
Q ss_pred -------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC----CC---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 192 -------PAYYNLGVVYSELM---QYDTALGCYEKAALERP----MY---------AEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 192 -------~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~----~~---------~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
++-..-+.-+...+ .|.+|...+.+...... .+ ..++...|..++-.|+.-.|...|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 11111111111122 45666665555433211 12 567888899999999999999999
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
+.++.++|.+... |..++..|...++.++-...|.++..++|+++++|+..|.+++-++++++|+.-|++++.
T Consensus 350 ~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 350 DAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred HHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988754 455555666678999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cH
Q 007634 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YA 402 (595)
Q Consensus 329 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 402 (595)
++|++..++..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|. ++
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 403 EAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 403 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
..+.+.|.+.. -.+++..|...+++|++++|....+...+ +..-+..++.+++
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEA 556 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHH
Confidence 55555554433 35899999999999999999988887664 3333444444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-26 Score=224.15 Aligned_cols=376 Identities=15% Similarity=0.129 Sum_probs=304.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.....++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGV 199 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~ 199 (595)
...++|++.+|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999776 6667777888899999999999999999832 233345577
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc-----------------
Q 007634 200 VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNF----------------- 258 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~----------------- 258 (595)
.+...++-+.|++.++.++.... ...+-+..++.++.....++.|.......... .+++
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 88888888999999999998432 34556778899999999999999888776551 1111
Q ss_pred ---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C
Q 007634 259 ---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C 333 (595)
Q Consensus 259 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~ 333 (595)
......+-.+...++.......+..+++..+..--...+ +.++.+..++..+...|++.+|+.++..+....+. +
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 001111122345555555556666666665544333323 35778999999999999999999999999887653 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------HHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEA 404 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~ 404 (595)
..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.+ ...
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999988876333222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
......++...|+.++=+..-..
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888889999998875444333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-26 Score=215.84 Aligned_cols=390 Identities=21% Similarity=0.234 Sum_probs=329.2
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHcCCCc---
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN--- 115 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~--- 115 (595)
+.++...+.+|++++-.|+|..|..+...- ..+..+....+..+.|+....++++|+..+... +..+|.+
T Consensus 46 ~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 46 TNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred cCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 378888999999999999999998887764 555667788899999999999999998888732 1111211
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH---------------------
Q 007634 116 ----------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI--------------------- 158 (595)
Q Consensus 116 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~--------------------- 158 (595)
....+..|.+|....+.++|...|.+++..++...++...+..
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 2245667888888999999999999999887776554333221
Q ss_pred -----------------------------------------HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 159 -----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 159 -----------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
++...+..++..+++.+..+.++..++.+|-+...+-..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ 284 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH 284 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH
Confidence 112245566777888888888888888888877776655
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
-.++..+|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...+.++..
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------ 358 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------ 358 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh------
Confidence 55888888888888888888889999999999999999999999999999999999999998877766665554
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.+.-++|+..|..+.++.|........+|.-|...++++.|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|
T Consensus 359 -e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 359 -EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred -cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 6799999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccC----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 358 QMALSIK----P---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 358 ~~al~~~----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+.++..- + .....+.+||.++.+++++++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999432 1 12456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhH
Q 007634 431 IDPDSRNAGQNR 442 (595)
Q Consensus 431 ~~p~~~~~~~~~ 442 (595)
++|++.-+..-+
T Consensus 518 l~p~n~~~~~lL 529 (611)
T KOG1173|consen 518 LKPDNIFISELL 529 (611)
T ss_pred cCCccHHHHHHH
Confidence 999996654443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-25 Score=230.92 Aligned_cols=384 Identities=12% Similarity=-0.016 Sum_probs=251.4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+..++..+..+...+++|++..|+..|+++++.+|.++.....++.++...|+.++|+..+++++...|.....+..+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 34677899999999999999999999999999999996555588888999999999999999999444455555666688
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++...
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 9999999999999999999999999877 4456777788899999999999999999985554 5566667667
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE----------------------------------- 249 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~----------------------------------- 249 (595)
++..+|+..++++++.+|++.+.+..+..++...|-...|.+...
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 888789999999999999999988888877777665554444333
Q ss_pred -------------HHHhcCCCcHHHHhhHHHHH-----------------------------------HHhhhhhhhcCC
Q 007634 250 -------------RCLAVSPNFEIAKNNMAIAL-----------------------------------TDLGTKVKLEGD 281 (595)
Q Consensus 250 -------------~al~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~ 281 (595)
..+...+..+........+. ...|..|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 33332222111111111111 112233444455
Q ss_pred HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHH
Q 007634 282 INQGVAYYKKALYYNW------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---------------HCAEACNNL 340 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---------------~~~~~~~~l 340 (595)
+++|+.+|+.++...+ ........|...+...+++++|..++++..+..| +..+....+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 5555555555444321 1122233444455555555555555555544222 123344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (595)
+.++...|++.+|++.+++.+...|.+..++..+|.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCh
Q 007634 421 AIDAYEQCLKIDPDSR 436 (595)
Q Consensus 421 A~~~~~~al~~~p~~~ 436 (595)
|.....++++..|+++
T Consensus 503 A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 503 MELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHhhCCCch
Confidence 5555555555555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=228.03 Aligned_cols=291 Identities=19% Similarity=0.218 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (595)
..+|+..|++.-...++...++..+|..|+.+++|++|..+|+.+-...|-..+....+..++..+ .+--+--
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~v~Ls 407 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDEVALS 407 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------HhhHHHH
Confidence 344444444433344444444444444444444444444444444444443333322222222221 1111111
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
-+.+..+..+|+.|+.|..+|++|..+++++.|+++|+++++++|....+|..+|.-+....+++.|..+|++++..+|.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 12233344445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 337 (595)
+..+|+.++.+|.. +++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++-..
T Consensus 488 hYnAwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred hhHHHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 55555555554444 33455555555555555555555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+..|.++...+++++|+..+++.-++-|+...+++.+|.+|.+.|+.+.|+..|.-|..++|.-.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66666666666666666666666666666666666666666666666666666666666666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-25 Score=200.20 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=275.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH-------------------HHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (595)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345678899999999999999888877643 222222222222222211 12222222
Q ss_pred HHHc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 007634 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (595)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~--------------------- 162 (595)
-++. ...++..++..|.++.+.|....|+..|..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234677888999999999999999999999999999988887666543211
Q ss_pred -hHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 163 -l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
++.++....+.++++.-++..... .|.....-...|.+.....++++|+..|+.+.+.+|-..+-.-...++++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233333444455555555555554 455555555555555666666666666666665555544444444444444443
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
-.+-.-.-+.+..++.-.++ ...-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 33333333333333332222 12234566667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
+.|+++++++|.+..+|+.+|+.|.-++...=|+-+|++|.+..|+++..|..||.||.+.++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+..++..||.+|.++++..+|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999843
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-26 Score=198.52 Aligned_cols=324 Identities=19% Similarity=0.222 Sum_probs=241.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.+++..+++|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.+++++|.+++|...|..++..+|++... ...++. .+......+...|+...|++.....+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 222222 2344556667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH---H--H
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA---L--T 270 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--~ 270 (595)
..+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+....+...-.+ - .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976432211110 0 0
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.-.......+++.++++..++.++.+|..+. ....+..|+...+++.+|+..+.+++.++|++..++...+.+|..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 0111122334444444444444444444222 222233344444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 007634 347 RDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~ 367 (595)
...|+.|+..|+++.+.++++
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 444444444444444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=221.93 Aligned_cols=307 Identities=20% Similarity=0.178 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
...+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H------
Confidence 3445556666666666666666666666666666666666666666666666666666665532211110 1
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555555555666666666666665555555556666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+|+..++++++..|.+... ..+..+..+|..+...|++++|+..++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666665555443211 12223344555555556666666666666666666666777777777777777777777
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 323 ~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+++++..+|.+ ..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 77777776655 345667777777777777777777777777776543 3677777777777777777777777777776
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 007634 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCL 429 (595)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al 429 (595)
......++..+.. .|+..+|+..+++.+
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 6544444433322 346666666666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-25 Score=217.55 Aligned_cols=302 Identities=16% Similarity=0.124 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc----HHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTH 121 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 121 (595)
......+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3455667789999999999999999999999999999999999999999999999999999998854332 356788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYN 196 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~ 196 (595)
+|.++...|++++|+..|+++++..|.+..+ +..++.++...|++++|++.++++++..|... ..+..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 8999999999999999999999887765544 77888888899999999999999888877642 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
+|.++...|++++|+..++++++..|+...++..+|.++...|++++|+..+++++...|.+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------- 248 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------- 248 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------
Confidence 788888888888888888888888888888888888888888888888888888877655421
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..
T Consensus 249 -----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 249 -----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 223445666777777777777777777777776543 37777888888888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAI 395 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 395 (595)
++++++..|++......++..+.. .|+..+++..+++.+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 888888877776554444433322 346667666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=204.01 Aligned_cols=380 Identities=17% Similarity=0.179 Sum_probs=262.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-----HHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHT 120 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 120 (595)
-..++.+|..|....-+.+|+..|+-+++ ..|+....-.++|.++++..+|.+|+++|+.++..-|.- ..++.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 34566677777777777777777776654 345555566677777777777777777777777766642 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh--------------
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------------- 186 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------------- 186 (595)
++|..+.+.|+|+.|+..|+.+++..|+...+ +++..|++..|+-++-.+.|.+.+.+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 67777777777777777777777777764432 22333333344444444444444332
Q ss_pred CCCC--------------------------------------------------------------HHHHHHHHHHHHHc
Q 007634 187 DPHY--------------------------------------------------------------APAYYNLGVVYSEL 204 (595)
Q Consensus 187 ~~~~--------------------------------------------------------------~~~~~~la~~~~~~ 204 (595)
+|++ .+.-.+.+..+++.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 0000 01111223334444
Q ss_pred CCHHHHHH-------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 205 MQYDTALG-------------------------------------CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 205 g~~~~A~~-------------------------------------~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
|+++.|++ +...++.++.-++.++.+.|.+.+..|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 44444444 44444445555566666667777777777788777
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|++++..+.. ...+++++|..+...|++++|+++|-+...+-.++.++++.++.+|..+.+..+|++++.++.
T Consensus 513 ykeal~ndas-------c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 513 YKEALNNDAS-------CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHcCchH-------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7777765443 234567778888888888888888888777777778888888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+....||..|....-+++|+.+|+++--+.|+.......
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
++.|+.+.|+|.+|.+.|+..-...|++.+...-+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 88888888888888888888888888877665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-25 Score=198.25 Aligned_cols=367 Identities=19% Similarity=0.191 Sum_probs=305.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
-+..|.+++++.+|.+|+++|+-++..-|. ...++.++|..+.+.|+|+.|+..|+..++..|+...+ +++..|
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~ 318 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIIC 318 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhh
Confidence 345788899999999999999999998885 24578889999999999999999999999999976544 556788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC----------C-CHHHHHHHHH------------------------------------
Q 007634 126 YKDEGRLVEAAESYHKALSADP----------S-YKPAAECLAI------------------------------------ 158 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~----------~-~~~~~~~~a~------------------------------------ 158 (595)
++..|+-++-.+.|.+.+.+-. . +++. ..+-.
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 8889999999999999886411 1 1000 00000
Q ss_pred -----------------------HHHHhHHHHHHhCChHHHHHHHHH---------------------------------
Q 007634 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYE--------------------------------- 182 (595)
Q Consensus 159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~--------------------------------- 182 (595)
+-.+.+..+.+.|+++.|++.+.-
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 001233456667777777766532
Q ss_pred ----HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 183 ----ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 183 ----~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
++..+.-++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+-.++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 2333444566777778888889999999999999999999999999999999999999999999999887655544
Q ss_pred HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
+.++..++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 4556666777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-...|.+.+++..|..+.-.+|-.
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888854
Q ss_pred HHHHHHHHH
Q 007634 419 SLAIDAYEQ 427 (595)
Q Consensus 419 ~~A~~~~~~ 427 (595)
+|.++-++
T Consensus 711 -d~key~~k 718 (840)
T KOG2003|consen 711 -DAKEYADK 718 (840)
T ss_pred -hHHHHHHH
Confidence 34444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-23 Score=217.01 Aligned_cols=344 Identities=13% Similarity=0.045 Sum_probs=249.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (595)
..+..+...|+.++|+..+++++...|.....+..+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 55566666677777777777777333444444444566777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH----
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD---- 208 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~---- 208 (595)
++|+..++++...+|.+... ..++.++...++..+|++.++++++.+|++..++..+..++...|-..
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 77777777777777763321 112333333456655777777777777777666555555555444333
Q ss_pred --------------------------------------------------------------------------------
Q 007634 209 -------------------------------------------------------------------------------- 208 (595)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (595)
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCH
Q 007634 209 -----TALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (595)
Q Consensus 209 -----~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (595)
++++.|+.+.... +--..+....|..|...++.++|+.+|+.++...+........ ......+...+...+++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~-~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD-LLDADDLYYSLNESEQL 383 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc-hHHHHHHHHHHHhcccH
Confidence 3333332222111 1122345566777778888888888888877665421000000 11124455667789999
Q ss_pred HHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 283 NQGVAYYKKALYYNW---------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 283 ~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..++..+|.++...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999988544 23567888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
|.+.+|+..++.+..++|++..+...+|.++..++++.+|.....++++..|+++...
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999998554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-23 Score=196.72 Aligned_cols=403 Identities=17% Similarity=0.141 Sum_probs=313.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+.+....+-+-+..+.+|.-|+-+-+++.... .++.-.+.+|++++..++++.|......- .+...+....+..+.+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 456666677778889999999999999998877 78888899999999999999998877764 6667788889999999
Q ss_pred HHHcCCHHHHHHHHHHH------HhcCCCC---------HH---HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 126 YKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~------l~~~~~~---------~~---~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+....++++|...+.+. +..+|.+ .. -....+.+++..|.+|....+.++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999988833 1111221 00 112234456667888888899999999998888776
Q ss_pred CCCHHH---------------------------------------------------------------------HHHHH
Q 007634 188 PHYAPA---------------------------------------------------------------------YYNLG 198 (595)
Q Consensus 188 ~~~~~~---------------------------------------------------------------------~~~la 198 (595)
+.+.++ ....+
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 554333 33334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
..++..+++.+..+..+..++.+|-+..++-..--++.+.|+..+-...-.+.++..|+.+..|+..+.. |..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y-------Yl~ 324 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY-------YLM 324 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH-------HHH
Confidence 4444445555555555555555555444433333355555555555555555555555555555444444 444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.|++.+|..+|.++..++|..+.+|...|..+...|+.++|+.+|..|-++.|........+|.-|...++++-|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN----P---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+|+.+.|.++-++..+|.+.+..+.+.+|..+|+.++..- + .....+.+||.++.+++.+++|+.+|++++.+
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999432 2 23456899999999999999999999999999
Q ss_pred CCCChhhhhhHHHHhhhccCCCcHHHHH
Q 007634 432 DPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (595)
Q Consensus 432 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (595)
.|.+..++... +..|...|+.+.+.+
T Consensus 485 ~~k~~~~~asi--g~iy~llgnld~Aid 510 (611)
T KOG1173|consen 485 SPKDASTHASI--GYIYHLLGNLDKAID 510 (611)
T ss_pred CCCchhHHHHH--HHHHHHhcChHHHHH
Confidence 99999888774 556666666655544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=187.56 Aligned_cols=317 Identities=18% Similarity=0.163 Sum_probs=249.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAY------------YNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
-...|.++.++|.+++|..-|+.+++.+|++. +++ ......+...|+...|+.....++++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888889999999999999999999642 222 2233445567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (595)
Q Consensus 223 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 302 (595)
-++..+...+.+|...|+...|+.-++.+-++..++.+..+.++..++.+ |+.+.++...+++++++|+....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999999999999999999999988888887777775 58899999999999999987543
Q ss_pred HHH------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 303 MYN------------LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 303 ~~~------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+-. -+.-....++|.++++..++.++.+|..+. ....+..|+..-+++.+|+..+.+++..+|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 221 122334455666666666666666665332 2334555666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 408 (595)
+..++...+.+|.....|+.|+..|+++.+.++++..+...+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 666666666666666666666666666666666665554444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-23 Score=198.48 Aligned_cols=389 Identities=15% Similarity=0.134 Sum_probs=316.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 124 (595)
++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|....|+..+++.+... |.++..+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 444555567777888999999999999998877888999999999999999999999999999988 777776666654
Q ss_pred -HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHH
Q 007634 125 -LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAP 192 (595)
Q Consensus 125 -~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~ 192 (595)
|....+..++++.+..+++..... ..-...+..+..+|.+|..+ ....++++.++++++.+|.++.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~--~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGG--QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 455679999999999999985422 22223344455555555332 2357899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
+.+.++.-|..+++.+.|+....++++. ..+++.+|..++.++...+++.+|+...+.++...|+|.........+-..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 556899999999999999999999999999999888743221111111111
Q ss_pred ------------------------------------hhhhhhhcCCHHHHHHHHHHHHhh--------------------
Q 007634 272 ------------------------------------LGTKVKLEGDINQGVAYYKKALYY-------------------- 295 (595)
Q Consensus 272 ------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 295 (595)
.+......++..+|...++++...
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 011111222334444444433321
Q ss_pred -CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 296 -NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 296 -~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
.|.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++..
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 0111 2367788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 370 SLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|-
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999888888 999999999999999999999999999999999999999999998874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-22 Score=191.81 Aligned_cols=375 Identities=14% Similarity=0.058 Sum_probs=279.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
-..|+.-|+.+.+.+-++-|+..|..+++.+|.....|...+..-..-|..++-..++++++...|.....|...+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 44567777777778888888888888888888777777777777777777777777888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
..|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNV 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhH
Confidence 7788888888888888888876665 333444555667778888888777775554 56777777777777888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
++|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|.....|..++. +....|..-.|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak-------leEk~~~~~rAR~ 740 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK-------LEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH-------HHHHhcchhhHHH
Confidence 888888888888888888888888888888888888888888888888877665554433 3344567777888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
.++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|++...|..-..+.-.-++-..++. |++....+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCC
Confidence 88888888888888888877788888888888888888888888777777665555555555444444 33444566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-+.-.+.+.++..-.|.+...|..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 77777788888888888888888888888888888888777778888887777788888888888877665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=198.89 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~ 161 (595)
...++..|..++..|++++|...+.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677888889999999999999999999999999999999999999999999999999999999999887 66
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~ 236 (595)
.++.....+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999999999999999999999832 233445577888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-------------------
Q 007634 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------------------- 295 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 295 (595)
..++-+.|++.++.++....+ ....... ++.++.....++.|..........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni-------~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNI-------LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHH-------HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883221 1222222 333344456777777766555441
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 296 ----------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 296 ----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
.++-..+...++.+..+.++..+++..+..--...| +.++.+..++.++...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 011111255555556666666666655544333334 458899999999999999999999999998876
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 365 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+.+...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999987433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-21 Score=185.80 Aligned_cols=380 Identities=13% Similarity=0.050 Sum_probs=314.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---------------------------
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (595)
+..-|+.|...++++-+.-|.++.+|..-+..-...|+.+.-.++..+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 34567777777888777778888888877777777777776666655554320
Q ss_pred ---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 007634 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (595)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (595)
.+.-..|..-+..+.+.+.++-|...|..+++..|..... |...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 1112345555666777777788888888888888876665 445555555668888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
.++++++...|.....|...+..+...|+...|...+.++++.+|++.++|+..-.+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88999999999888889999999999999999999999999999999999998888999999999999999998887776
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 337 (595)
. .+++........+++.++|+.+++++++..|.....|..+|.++.++++.+.|...|...++..|.++..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 23444445555578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------------
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (595)
..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.+.|.....++++..|++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887754
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHH
Q 007634 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (595)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (595)
+.++...|.++....++++|.++|.++++++|++.++|... .-.++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHH
Confidence 44667789999999999999999999999999999998764 233444554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=181.24 Aligned_cols=386 Identities=14% Similarity=0.104 Sum_probs=319.8
Q ss_pred cccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---------
Q 007634 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------- 111 (595)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 111 (595)
+.....+.+.....+.++...++-+.|+..+.++.... ..+.....++..+-.-++..++.-.+...+..
T Consensus 90 S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~ 168 (564)
T KOG1174|consen 90 SYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE 168 (564)
T ss_pred cCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH
Confidence 34445678889999999999999999999877654422 24455566666665555554544444443332
Q ss_pred ----------------------CCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 112 ----------------------DPQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 112 ----------------------~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
.|..+..+ ...+.++....-+..+..++-.-....|++... +..+|.+
T Consensus 169 ~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~ 241 (564)
T KOG1174|consen 169 ALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKC 241 (564)
T ss_pred HHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhh
Confidence 22222222 233444444445555566666666777887765 7888999
Q ss_pred HHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 246 (595)
++..|++.+|+..|+++..++|......-..|.++...|++++-.......+.+......-|+--+.+.+..++++.|+.
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 247 ~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+-+++++.+|.+..++...+..+. ..++.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~-------~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLI-------ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHH-------hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999999998876655555544 4679999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 327 FHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 327 l~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
++..|.++.++..+| .++. .-.--++|.+++++++++.|....+-..+|.++...|.+++++..+++.+...|+ ...
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~L 473 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNL 473 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHH
Confidence 999999999999997 4443 3345689999999999999999999999999999999999999999999999987 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+..||.++...+.+++|+++|..|+.++|++..+...+
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999999999999999998776553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=188.13 Aligned_cols=360 Identities=19% Similarity=0.189 Sum_probs=295.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG- 130 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 130 (595)
-.....+...|+|++|++--.+.++.+|+-+..|..+|..+.-+|+|++|+..|.+.++.+|++...+..++.++....
T Consensus 40 Snrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~ 119 (539)
T KOG0548|consen 40 SNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA 119 (539)
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999999998888887773220
Q ss_pred --------------------CHHHHHHHHHHHHh---cCCCCHHH-----------------------------------
Q 007634 131 --------------------RLVEAAESYHKALS---ADPSYKPA----------------------------------- 152 (595)
Q Consensus 131 --------------------~~~~A~~~~~~~l~---~~~~~~~~----------------------------------- 152 (595)
++-..-..|...++ .+|.+...
T Consensus 120 ~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (539)
T KOG0548|consen 120 ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAE 199 (539)
T ss_pred hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCC
Confidence 00111112222222 12211000
Q ss_pred --------------------HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 153 --------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212 (595)
Q Consensus 153 --------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 212 (595)
....+.-...+|...+...++..|++.|..+++++ .+...+.+.+.+|+..|.+.+++.
T Consensus 200 p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~ 278 (539)
T KOG0548|consen 200 PCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIE 278 (539)
T ss_pred cccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhc
Confidence 01123335568999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 213 CYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 213 ~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
...++++..... ..+...+|..+...++++.|+.+|.+++..... ..+.......+++
T Consensus 279 ~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~ 343 (539)
T KOG0548|consen 279 LCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKA 343 (539)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHH
Confidence 998888765442 234445677888889999999999998866544 1222234577888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+...+...-.+|.-..-....|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+.+++++|
T Consensus 344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+....|..-|.++..+.+|++|++.|+++++.+|++.++...+..|...+.......+.+++
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999998876444445555555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-21 Score=188.73 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=234.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLG 198 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la 198 (595)
...|.+....|+++.|.+.+.++.+..|+.... +...|.+....|+++.|..++.++.+..|+.. .+....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 455667777888888888888888777765443 44556677777888888888888888777764 4566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ...
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HHH
Confidence 888888888888888888888888888888888888888888888888888888775444332211111 11111 112
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHH
Q 007634 279 EGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDK 352 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~la~~~~~~~~~~~ 352 (595)
.+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2333445566777777666 5899999999999999999999999999999999987532 223333444688999
Q ss_pred HHHHHHHHHccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 353 AVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 353 A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|+++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 889999999999999999999999 67888898655 669999999999999999999998
Q ss_pred Hhc
Q 007634 429 LKI 431 (595)
Q Consensus 429 l~~ 431 (595)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-21 Score=186.72 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (595)
+...+..|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445567777778888888888888888777777777777778888888888888888888887777764 4555567888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~ 202 (595)
...|++++|...+++..+..|+++.+ +..++.++...|++++|.+.+.+..+....++.... ....-+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887765 556666667778888888888877776444333221 1222223
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
..+..+++...+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 34444555556666666666 467778888888888888888888888888877776432100
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~ 356 (595)
..........++.+.+++.++++++..|+++ .....+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 0011111112333444555555555555555 4444555555555555555555
Q ss_pred HH--HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 357 ~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
|+ .+++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 34444444333 33555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=199.96 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
..++.++...|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35588888899999999999766544 488999999999999999999999999999999999989999899888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 316 (595)
+++++|+.+++++.+..++ +..+.. ...++...++++++...++++.... +.++..+..+|.++...|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~~-------~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLLS-------ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhhH-------HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876643 322222 3334455789999999999977655 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
++|+..|+++++.+|+++.+...++.++...|+++++.+.++...+..|.++..+..+|.++..+|++++|+.+|++++.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=168.01 Aligned_cols=383 Identities=17% Similarity=0.146 Sum_probs=294.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHHcC--CCc---
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN--- 115 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~--- 115 (595)
.-+-+|..+++...|+...+++..+++..|++..+|.....++...- +-.+|...++. .+... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34567889999999999999999999999999999999988876542 22245444432 11111 100
Q ss_pred ----------H-----------HHHHHHHHH-HHHcCCHHHHHHHHH--------------------------------H
Q 007634 116 ----------A-----------CAHTHCGIL-YKDEGRLVEAAESYH--------------------------------K 141 (595)
Q Consensus 116 ----------~-----------~~~~~la~~-~~~~g~~~~A~~~~~--------------------------------~ 141 (595)
. .+-...... -.+-|..+.|+..-+ .
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~n 165 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYN 165 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceee
Confidence 0 000000000 011122222221111 1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHH
Q 007634 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 142 ~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~g~~~~A~ 211 (595)
+-.++|+.......+...++. .+++..++...|-......++.+ |. +......+|.||+.+|.+.+|.
T Consensus 166 lsRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Ae 243 (478)
T KOG1129|consen 166 LSRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAE 243 (478)
T ss_pred hhhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhH
Confidence 112233222222222333332 24455677777776666555542 11 2344467999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 007634 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (595)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (595)
+.++.+++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+....... ++++...++.++|.++|+.
T Consensus 244 kqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 244 KQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------ARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred HHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-------HHHHHHHHhHHHHHHHHHH
Confidence 999999998875 89999999999999999999999999999999987654444 4455556799999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFS 368 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~ 368 (595)
+++.+|.+.++.-.+|.-|+..++.+-|+.+|++++++.-.+++.+.++|.|++..++++-++..|++++.... ...
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa 395 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA 395 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 237
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999988887775
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-20 Score=173.09 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
....++..+...+..++|.+.++..+++++..|++.+.+...|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
....+|++|+.+|+.|+.+.|+|... +..++....+.++++.....-.+.++..|.....|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 66777777778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 207 ~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
+..|...++...+.. |. ..+.......+..+.|.+++|.+.+..--...-+. -......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-------la~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-------LAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-------HHHhhhHHHHHHH
Confidence 999999988877654 32 23455556677778888888877765532211111 1122334555666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
.+++++|...|...+..+|++...+..+-.++.
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 779999999999999999998877776666664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=193.06 Aligned_cols=364 Identities=20% Similarity=0.211 Sum_probs=274.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (595)
.++...|...|-+++.++|..+.++..+|..|....+...|.++|.+|.++++.+..+....+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.+-+..|..... ..|...|-.+...++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..+
T Consensus 551 ~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 666655543222 225668999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh-----
Q 007634 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----- 295 (595)
Q Consensus 221 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 295 (595)
+|.+.-..+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..++++.++.
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888877788888888888887777777666666666665532
Q ss_pred --C-CCC--------------------------------------------------------------HHHHHHHHHHH
Q 007634 296 --N-WHY--------------------------------------------------------------ADAMYNLGVAY 310 (595)
Q Consensus 296 --~-~~~--------------------------------------------------------------~~~~~~la~~~ 310 (595)
. -++ +..|+++|..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 1 011 11244444444
Q ss_pred Hh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 311 GE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 311 ~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
.. +.+...|+.++.+++++..++...|+.+|.+ ...|++.-|..+|-+++...|.+...|.++|.++.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 33 1122345555555555555555555555555 33355555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+++.|...+.++..++|.+...|...+.+....|+.-++...|....+
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 555555555555555555555555555555555555555555555333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-20 Score=181.92 Aligned_cols=303 Identities=11% Similarity=0.009 Sum_probs=236.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l 197 (595)
.+..|......|++++|.+...+.-+..+. +... +...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~------~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVN------YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566667788888888777765544222 2221 3334555577888999999999988888886533 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH-HHHHHHhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKV 276 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~l~~~~ 276 (595)
+.++...|++++|+..+++..+..|+++.++..++.+|...|++++|+..+.+..+..+.++.....+ ..++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999988888887776654432211 12222222222
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22344555666666666667889999999999999999999999999999994 4456555555554 44999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++..+|+.++|..+|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999985 456689999999999999999999998864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-18 Score=185.34 Aligned_cols=366 Identities=14% Similarity=0.076 Sum_probs=248.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...++..-..+.+.|++++|+++|+++...+.- +...+..+...+...|..++|...++.... | +...+..+-
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHH
Confidence 44566777777788999999999999999876532 333333445556677778888877766543 3 455666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYS 202 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~ 202 (595)
..+...|++++|...|+++.+....... .++..+...+.+.|+.++|.+.|+++.+.... +...|..+...|.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777788888888888777765432111 12555666667777888888888777765432 5677777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+.|++++|+..|.+..+..- -+...|..+...+.+.|++++|.+.+.++... .|+. . ++..+-..+.
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~ 590 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACA 590 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHH
Confidence 88888888887777765431 23567777777777778888888877777542 3331 1 2333334455
Q ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~ 354 (595)
+.|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+.+|++..+. .| +...|..+...+.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 5677777777777777665 345667777777777777777777777777665 23 3566777777777777777777
Q ss_pred HHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 355 ECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 355 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|.+.|++...
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777776653 234566777777777777777777777776543 343 56677777777777777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-20 Score=165.12 Aligned_cols=309 Identities=15% Similarity=0.107 Sum_probs=268.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 007634 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (595)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~ 167 (595)
.|.++....-+..+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|..... .-..|..+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL 276 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL 276 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence 34444444445555666666677789999999999999999999999999999999999998776 44556667
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
...|++++-.......+........-|+--+...+..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 78899999999999999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL 325 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~ 325 (595)
|+.+..+.|..-..+.. +-.+|...|.+.+|....+.++...|.++.++..+| .++. .-.--++|.+.+++
T Consensus 357 FR~Aq~Lap~rL~~Y~G-------L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRG-------LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHhcchhhHHHHHH-------HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 99999999987655444 444555578999999999999999999999999886 4443 34456899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 326 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++.+.|....+-..++.++...|.++.++..+++.+...|+ ...+..||.++...+.+.+|+.+|..++.++|++..+.
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999999999999999999999999999998886 46788999999999999999999999999999988776
Q ss_pred HHHHHH
Q 007634 406 NNLGVL 411 (595)
Q Consensus 406 ~~la~~ 411 (595)
..+-.+
T Consensus 509 ~Gl~~l 514 (564)
T KOG1174|consen 509 RGLRLL 514 (564)
T ss_pred HHHHHH
Confidence 655443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=193.76 Aligned_cols=261 Identities=20% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
..+..|..++..|++++|++.+++.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3456677777888888888887655443 367777777777777777888888888888877777777777777766 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g 205 (595)
..+++++|+.+++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 777777777777777665433 222 3334445566677777777777765543 456677777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+.++|+..|+++++.+|+++.+...++.++...|+.+++...++...+..|.++..+..++.++.. .|++++|
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-------lg~~~~A 233 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-------LGRYEEA 233 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-------HT-HHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-------ccccccc
Confidence 777777777777777777777777777777777777776666666655554444333333333333 2344444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.++++++..+|+++..+..+|.++...|+.++|..++.++
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 44444444444444444444444444444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=168.92 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=208.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
..+|.||...|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+.+.++..|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 45777777778888888888887776654 77778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
.++|.++|+.+++..|.+.++...++ .-|.-.++++-|+.+|++.++..-.+++.+.++|.+++..++++-++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia-------~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIA-------VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeee-------eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888776544333 33344678899999999999999899999999999999999999999
Q ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 321 VFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 321 ~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
..|++++.... ..+++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999998743 347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 007634 398 NPTYAEAYNNLGVLY 412 (595)
Q Consensus 398 ~p~~~~~~~~la~~~ 412 (595)
.|+-.+..++++.+-
T Consensus 459 ~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 459 MPDMAEVTTNLQFMS 473 (478)
T ss_pred CccccccccceeEEe
Confidence 999888887776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=175.72 Aligned_cols=350 Identities=16% Similarity=0.094 Sum_probs=293.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHcCC-----CcHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDP-----QNAC 117 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~ 117 (595)
...+.|...+..+...|.-..|+.+++..+... |+++..+... ..|....+..++++.+..+++...- -.+.
T Consensus 355 ~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 356788999999999999999999999999888 7776655554 4555678999999999999998432 2356
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 118 AHTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 118 ~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
.+..+|.+|..+- ...+++..++++++.+|.++.+ .+.++.-|..+++.+.|.+..+++++.
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 7788888776532 3567899999999999999977 777888888899999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Q 007634 187 -DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--------- 256 (595)
Q Consensus 187 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 256 (595)
..+++.+|..++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+....
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 5568999999999999999999999999999999888665555555555555666666555444332211
Q ss_pred -----------------------------------------------------CcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 257 -----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 257 -----------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.....+...-..+...+..+...++.+
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~ 667 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD 667 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch
Confidence 111233334445556677788889999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHH
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMAL 361 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al 361 (595)
+|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++......+|.++...|+..-|.. .+..++
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888 999999
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+++|.++++|+.+|.++...|+.++|.++|..++++.+.+|
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999987765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=190.81 Aligned_cols=249 Identities=15% Similarity=0.024 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE---------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (595)
+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..+ +..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-------LGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH
Confidence 44555555555555555555555555544422 22455555555555555555544 334444445
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555554444444455555555555555
Q ss_pred HHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 249 ERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 249 ~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++... |+++..+..++.++.. .|++++|...+.+.....|........++..+...|+ +|...+++.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~-------~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSL-------KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHh-------CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 5555443 4444445555555544 2455555555555555555555555555655555552 5555555544
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
+..............++.-.|+.+.+..+ +++.+.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 501 ESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 43222222222255555556666666555 554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=192.01 Aligned_cols=397 Identities=14% Similarity=0.023 Sum_probs=299.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...+..+...+...++++.|..++..+.+. .| +...+..+...|.+.|++++|.+.|++..+ | +...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHH
Confidence 45667777788888889999999998888764 34 567788888888999999999998887743 2 556788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHhCChH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQ 174 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~ 174 (595)
..|.+.|++++|+..|++..+....... ....-..++..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 8888899999999999888654321100 00001123566778888899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (595)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 253 (595)
+|.+.|++.. +.+...|..+...|.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+.+..+++
T Consensus 277 ~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 277 DARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998763 4567889999999999999999999999887643 22467888888999999999999999998887
Q ss_pred cCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Q 007634 254 VSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-P 331 (595)
Q Consensus 254 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~ 331 (595)
... .+.. ++..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|+.++|++.|++..+.. .
T Consensus 354 ~g~~~d~~-------~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIV-------ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCee-------ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 652 2222 344455566667899999999987754 356688889999999999999999999987653 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
.+...+..+...+...|..++|.++|+...+..+ .+...+..+..+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence 3466778888888899999999999988876432 23457788888899999999999888764 23443 56788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHH
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (595)
..+...|+.+.|...+++.+++.|++...+.. +...|...|..+++.+..+.
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999987665543 34566677776665554433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-19 Score=175.91 Aligned_cols=296 Identities=10% Similarity=-0.034 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGIL 125 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~ 125 (595)
+...+..|...+..|+|++|.+.+.+..+..+ ++..++.+ +......|+++.|..++.++.+.+|++..+ ....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 34455666666667777777766655444322 23333333 444467777777777777777766665432 2333666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH--------HH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NL 197 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~l 197 (595)
+...|++++|...++++.+..|+++.+ +..++.++...|++++|++.+.+..+..+.++.... .+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777776665 444455555566777777666666665544332211 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
........+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++..++ +.. ...+..+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l----~~l~~~l----- 305 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERL----VLLIPRL----- 305 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHH----HHHHhhc-----
Confidence 111112222333333333333444556666666666666666666666666666663332 211 1111111
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++...|+.++|..+|
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 12455555555555555555555555555555555555555555555555555443 22334555555555555555555
Q ss_pred HHHHc
Q 007634 358 QMALS 362 (595)
Q Consensus 358 ~~al~ 362 (595)
++++.
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 55443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=190.24 Aligned_cols=251 Identities=12% Similarity=-0.007 Sum_probs=161.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
+.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4467788888888888888888887777776533 2367777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 321 (595)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++.....++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777777766544444333333 4566666666666666666666555555555566666666666
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 322 ~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+++++... |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 666666553 55666666666666666666666666666666666666666666666666663 555555554443222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
...-......++.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222222355566666666665555 444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=156.36 Aligned_cols=214 Identities=24% Similarity=0.245 Sum_probs=198.4
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
.......+..+.+|..|++.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999999999999999999999874 443332 445899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
+..|+|-.|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|....
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999988888999999999999999999999999998899998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-17 Score=179.02 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=297.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~ 134 (595)
..+...|..++|..+++.+.. | +...+..+-.++...|++++|...|.++.+.... +...+..+...|.+.|+.++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 346678899999999987754 4 5678888888899999999999999999887543 56788999999999999999
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 135 AAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALG 212 (595)
Q Consensus 135 A~~~~~~~l~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 212 (595)
|..+|+++.+.... +... |..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.+
T Consensus 491 A~~vf~eM~~~Gv~PdvvT-------ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHT-------FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999876432 3333 67777888899999999999999876532 247889999999999999999999
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHH
Q 007634 213 CYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (595)
Q Consensus 213 ~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (595)
.+.++... .| +...+..+...|.+.|++++|.+.|+.+.+... .+.. .|..+...+.+.|++++|..
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~-------tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE-------VYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH-------HHHHHHHHHHhcCCHHHHHH
Confidence 99999763 34 467888899999999999999999999988753 2333 34445555666889999999
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--
Q 007634 288 YYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 363 (595)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 363 (595)
+|++..+.. ..+...+..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998763 2246788899999999999999999999999864 456889999999999999999999999988654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
.| +...|..+...|.+.|++++|.+.|++.... .|+ ...+..+...+.+.|++++|.+++.+..+...
T Consensus 716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 716 RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34 4678999999999999999999999988764 454 66777788999999999999999999988643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=181.25 Aligned_cols=261 Identities=19% Similarity=0.245 Sum_probs=200.0
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
+..|..+.+.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 318 (595)
-.+|..++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764321110000000000001111233445566666666666 577888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
|+.+|+.++...|++...|+.||-.+....+.++|+..|.+|+++.|....++++||..++.+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred CCc----------HHHHHHHHHHHHHcCCHHHH
Q 007634 399 PTY----------AEAYNNLGVLYRDAGSISLA 421 (595)
Q Consensus 399 p~~----------~~~~~~la~~~~~~g~~~~A 421 (595)
+.. ..+|..|-.++..+++.+-+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 431 13555555555555555433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=175.05 Aligned_cols=302 Identities=17% Similarity=0.134 Sum_probs=239.1
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
....++.....+..++++.+|.+|+..+..+++..|+++..|...+.+++..|++++|.-..++.++++|.........+
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREG 124 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchh
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CCCHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVV 200 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~ 200 (595)
.++...++..+|...++. ..+ +....|+..+++.+..+ |....+....+.+
T Consensus 125 ~c~~a~~~~i~A~~~~~~--------~~~------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKS--------KQA------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred hhhhhhHHHHHHHHHhhh--------hhh------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 999999999999888871 111 01223333344433332 4445677778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|...--..+++++.+.++++..|.+++-.++.+.|+.+|++++.++|+....... +.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----~~---------- 244 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----SM---------- 244 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----hh----------
Confidence 9999999999999999999999999999999999999999999999999999999986543211 11
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
.|+....+..-|.-.++.|++.+|.++|..++.++|++ +..|.++|.+...+|+..+|+..
T Consensus 245 ---------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 245 ---------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred ---------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 11223445556667777777777777777777777765 45667777777777777777777
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
++.++++++....++...|.|+..+++|++|++.|+++++...+
T Consensus 310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777777777777777777777777777776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=178.89 Aligned_cols=266 Identities=21% Similarity=0.269 Sum_probs=217.4
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..
T Consensus 283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE 203 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~ 203 (595)
|...|.-.+|..++.+.+...|........--...............+..-.+.|..+....| .+++++..||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999999999999999999887763221000000000000000111234455667777777777 689999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.|+|++|+.+|+.++...|++...|..||-.+....+.++|+..|++|+++.|....++++++..+.++ |.|.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~yk 515 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYK 515 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHH
Confidence 999999999999999999999999999999999999999999999999999999999888888888776 5999
Q ss_pred HHHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHH
Q 007634 284 QGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~ 318 (595)
+|.++|-.++.+.+.. ..+|-.|=.++...++.+.
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 9999999999876541 1345544455555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-18 Score=187.40 Aligned_cols=351 Identities=15% Similarity=0.064 Sum_probs=235.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTD 162 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 162 (595)
+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. |+... +..
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ 394 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IAS 394 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHH
Confidence 3333444444444444444444432 1223344444555555555555555555443322 22211 222
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
+-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCH
Confidence 22233444555555555555554432 2345666777888888888888888887543 3456788888888888888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH----------------------------hhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD----------------------------LGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------------------l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
++|+..|++.....+.+...+..+..++.. +-..|.+.|+.++|...|+..
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 888888888875433333333322222222 235677889999999999876
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQ 369 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~ 369 (595)
+.+..+|..+...|...|+.++|+..|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ -+..
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 567889999999999999999999999998875 344 55566677788999999999999999884432 2357
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
.+..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++..|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHH
Confidence 8899999999999999999999875 35665 6778888888899999999999999999999998765543 444566
Q ss_pred cCCCcHHHH
Q 007634 450 NEGHDDKLF 458 (595)
Q Consensus 450 ~~~~~~~~~ 458 (595)
..|..++..
T Consensus 703 ~~g~~~~a~ 711 (857)
T PLN03077 703 DAGKWDEVA 711 (857)
T ss_pred HCCChHHHH
Confidence 666654443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-18 Score=178.27 Aligned_cols=354 Identities=13% Similarity=0.037 Sum_probs=266.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGIL 125 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 125 (595)
.+......+...|++.+|+.+|+.+....+ -+...+..+..++...++++.|...+..+.+. .| +...+..+...
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 466667788899999999999999876543 35678888888999999999999999988874 34 57788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------- 189 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------------- 189 (595)
|.+.|++++|...|++..+ |+ ... |..+...+...|++++|++.|+++.+....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~~-~~t-------~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--RN-LAS-------WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--CC-eee-------HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999998754 32 222 677778888899999999999998765322
Q ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 190 --------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 190 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
+..++..+...|.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|+..|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 1223455667777888888888887765 23456778888888888888888888888
Q ss_pred HHHhc--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 250 RCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 250 ~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+..+. .|+ ..++..+...+...|.+++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++.
T Consensus 315 ~M~~~g~~pd--------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EMRDSGVSID--------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHcCCCCC--------HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77653 233 1245556667777888888888888877765 445667778888888888888888888776
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHH
Q 007634 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAE 403 (595)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 403 (595)
.+ .+...|+.+...|.+.|+.++|++.|++..+.. .-+..++..+...+...|+.++|.++|+...+..+ -+..
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 53 345678888888888888888888888876542 12355667777777888888888888888775422 1245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.|..+..+|.+.|+.++|.+.+++.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC
Confidence 6777888888888888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=167.94 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 62 NKFVDALALYEIVLEKDS---G-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 62 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455556666666664322 1 244555566666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
.|+++++++|++..+ +..+|.++...|++++|++.++++++.+|+++
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555555443 44455555555555555555555555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-17 Score=153.46 Aligned_cols=393 Identities=13% Similarity=0.035 Sum_probs=275.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
....++..-..+...|+|++|.....+++...|++..+....-.++.+.++|++|+...++-......+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 347888888999999999999999999999999999999999999999999999995554432222122 2237889999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------ 188 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------------ 188 (595)
++.+..++|+..++ ..++.+... +...+.++++.|+|++|+..|+..++.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 334444333 44556667777999999999988755422
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCC
Q 007634 189 -------------HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 189 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~-------~~~~~~~la~~~~~~~~ 240 (595)
+..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 135678999999999999999999999995431 11 13467788999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHH------------------------------------------HHHhhhhhhh
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIA------------------------------------------LTDLGTKVKL 278 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~~~~ 278 (595)
.++|...|...++.+|.+.........- +.+.+.....
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887664221111110 0111111111
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.+.-+.+.+.....-...|...-..............+.+|..++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1112222222111111222222222223333333347889999999999988887 778888999999999999999999
Q ss_pred HHHHcc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 358 QMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 358 ~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
...+.. ....+.+-..+-..+...++.+-|...+.+++.. .+.....+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 843321 1122444444555566667666666666666543 33334566677888888899999999
Q ss_pred HHHHHHhcCCCChhhhhhHHHHhhhcc
Q 007634 424 AYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (595)
.+++.++.+|++.++...+..+++++.
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 999999999999999888877776663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-19 Score=163.98 Aligned_cols=244 Identities=18% Similarity=0.129 Sum_probs=191.5
Q ss_pred HhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 007634 94 MQNMGRLAFDSFSEAVKLDP----QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (595)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (595)
..+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+ +..+|.++..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA-------YNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHH
Confidence 33567889999999996444 336789999999999999999999999999999998776 7888888899
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
.|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998742222 234456788999999998
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
+.....+... + ..+.....++..... ..++.+.+.++...+..|...++|+.+|.++...|++++|+.+|+++++.
T Consensus 190 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 190 QRYEKLDKEQ--W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhhCCccc--c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8765543222 1 123444445533221 12334444445556667788899999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHcCC
Q 007634 330 NP-HCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 330 ~~-~~~~~~~~la~~~~~~~~ 349 (595)
+| +..+..+.+..+....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 96 667766666666555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-17 Score=158.55 Aligned_cols=345 Identities=17% Similarity=0.161 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
..++..+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|......++..++.+... |..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence 4566777777889999999999999999999999999999999999999999999999999998887665 788
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
+|.++....+|++|+.+|+.++...|++...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
.|...++...+.. |+.. ......+......+....|.+++|++.+..--...-+........+.++..++++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~--~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKE--DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHH--HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999988887665 3322 2223344444556666778888888887765444444455667789999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHH----------------------------------HHHcc-
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQ----------------------------------MALSI- 363 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~----------------------------------~al~~- 363 (595)
...|...+..+|++...+..+-.++..-.+--+++ ..|. ..++.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99999999999999776655544442111111111 1111 00000
Q ss_pred --------------------------------------C--------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 364 --------------------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 364 --------------------------------------~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+ |-. ...++.++.-+...|+++.|..+++.++
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0 111 2345667888899999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
...|+.++.+...|.++...|+.++|..++..+.++|-.|.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999999999987654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=176.36 Aligned_cols=380 Identities=19% Similarity=0.227 Sum_probs=300.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------------------------HHhCCHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLA 101 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A 101 (595)
.......+.+......|.+|...+..+..... +-+.+..+..|+ ..+.+...|
T Consensus 399 ~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~a 477 (1238)
T KOG1127|consen 399 ASNQRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALA 477 (1238)
T ss_pred hhhhhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33355566666777778888777776665541 111111111111 223457789
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
...|-++++++|....++..+|.+|...-+...|..+|.++.++++.+..+ ....+..+....+++.|....-
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777 5556667777899999999977
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 182 EALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 182 ~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.+-+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 776666643 455677999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 007634 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--- 329 (595)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 329 (595)
...+..+..... .|.+.+|+..+...+...... .+.+...+..+...|-+.+|..++++.++.
T Consensus 631 y~~fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 631 YGRFKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777666665555 568999999988887664433 344555555555555555555555554432
Q ss_pred --------------------------CC-----------------------------------------CCHHHHHHHHH
Q 007634 330 --------------------------NP-----------------------------------------HCAEACNNLGV 342 (595)
Q Consensus 330 --------------------------~~-----------------------------------------~~~~~~~~la~ 342 (595)
.| ..+..|+++|.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 01 11345677777
Q ss_pred HHHH--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 343 IYKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 343 ~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+..+|.....|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 7765 2344689999999999999999999999998 666999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 007634 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (595)
Q Consensus 415 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (595)
..+++-|...|.++..++|.+...|....
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 99999999999999999999987776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=160.22 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=188.9
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..+++++...+... ....+..+|.++...|++++|...+.+++..+|++..++..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998532211 1223677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999989899999999999999999999999888776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-19 Score=146.12 Aligned_cols=205 Identities=22% Similarity=0.217 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-------------- 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-------------- 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--------------
Confidence 445555555555555555555555555555555555555555555555555555555555555554
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~ 349 (595)
+.+++.+.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+
T Consensus 102 ---------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 102 ---------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ---------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 5555566666666666666666666666653 34456666677777777777
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
++.|.++|+++++.+|+.+.....++...+..|++..|..++++.....+-..+.+.....+-...|+-+.|-++=.+..
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776666666556666666666667777777666666666
Q ss_pred hcCCCChh
Q 007634 430 KIDPDSRN 437 (595)
Q Consensus 430 ~~~p~~~~ 437 (595)
...|...+
T Consensus 235 r~fP~s~e 242 (250)
T COG3063 235 RLFPYSEE 242 (250)
T ss_pred HhCCCcHH
Confidence 66666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-16 Score=143.36 Aligned_cols=393 Identities=15% Similarity=0.094 Sum_probs=305.7
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...++..|+--..++++..|..+|++++..+..+...|+..+.+-++......|...+.+++.+-|.-...|+....+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35567888888889999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------------------------HHHHHhHHHHHHhCChHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLA--------------------------IVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a--------------------------~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
-..+|+...|.++|++-++..|+. .++.... ..+...+..-...|+..-|...
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 899999999999999999998873 2222211 1234455556667777777777
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH---------------------------------------
Q 007634 180 YYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKA--------------------------------------- 217 (595)
Q Consensus 180 ~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a--------------------------------------- 217 (595)
|+++++.-.++. ..+...|..-..++.++.|.-+|+-+
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 777776543321 22222333333344444444444333
Q ss_pred -----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHH
Q 007634 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYY 289 (595)
Q Consensus 218 -----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~ 289 (595)
++.+|.+.++|+..-.+....|+.+.-.+.|++++...|....-....-.+|.-+..+ .....+.+.+.+.|
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3356777788888888888899999999999999988776544333333333332222 22467899999999
Q ss_pred HHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 290 KKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 290 ~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+.++++-|.. +.+|...|.....+.+...|.+.+..++-..|.+ ........+-.++++++.....|++-++..|
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 9999998864 6789999999999999999999999999999984 4455556677788999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
.+..+|...|.+-..+|+.+.|...|+-|++...-+ ++ .|-..-..-...|.++.|...|++.|+..+... +|..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 999999999999999999999999999999875433 22 344445556678999999999999999988765 5544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=162.94 Aligned_cols=278 Identities=19% Similarity=0.200 Sum_probs=239.2
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.+.-....|..++...+|..|+..+..+++..|+++..|.+.+.+++..|++++|.-..++.+++.|..+..+...++++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34446667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH------------hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 236 KNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 303 (595)
...++..+|...++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.+++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 99998888887665221 111111100 00111122234455567899999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---- 367 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---- 367 (595)
+..|.++...++.+.|+..|++++.++|+.. +.+..-|.-.++.|++.+|.++|..++.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 9999999999999999999999999998763 456677888999999999999999999999986
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
...|.+++.+...+|+..+|+...+.+++++|....++...|.|+..++++++|.+.|+++++...+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5578999999999999999999999999999999999999999999999999999999999998766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-17 Score=142.71 Aligned_cols=267 Identities=20% Similarity=0.211 Sum_probs=233.4
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~ 237 (595)
.|.-+...++.++|++.|..+++.+|...++...||.++...|..+.|+..-+..++. |+. .-+...+|.-|..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 3555566789999999999999999999999999999999999999999998876654 442 4578899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGE 312 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~ 312 (595)
.|-++.|...|....+...--.. ++..+-.+|....++++|++..++..+..++. +..+..++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~-------AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEG-------ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 99999999999998765443333 34455566677899999999999999988775 4568889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..+|.++|+.++.+.++
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 778999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.++.+..++ +++...++.+-....-.+.|..++.+-+...|+-...
T Consensus 273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 999998887 5667778888888888899999999999999985433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-17 Score=176.98 Aligned_cols=359 Identities=10% Similarity=0.012 Sum_probs=280.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (595)
.+...+..+...|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|++.|++..+.. |+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3566777888999999999999999998743 356788999999999999999999999886643 544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
..+...|++++|.+++..+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 5778888999999999888876543221 2356677778888888888888887643 345678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEA-----------------------------------YCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------~~~la~~~~~~~~~~~A~~~~ 248 (595)
.|+.++|+..|++.....+.+... ...+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 888888888888876532222222 223446778888888888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.. +.+...|. .+...+...|+.++|++.|++..+.. |+ ..++..+-..+...|..++|..+|+..
T Consensus 548 ~~~----~~d~~s~n-------~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 548 NSH----EKDVVSWN-------ILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred Hhc----CCChhhHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 775 33443444 44445556789999999999988753 43 455666777899999999999999999
Q ss_pred HhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 327 FHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 327 l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
.+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 8543 234678999999999999999999999985 35554 6678778778888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+..++.+|...|++++|.+..+...+.
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999999999887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-17 Score=144.15 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=241.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~ 194 (595)
+..|.-+.-.++.++|+..|..+++.+|...++ ...+|+.+...|..+.|+..-+..++. |+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 334566667789999999999999999988776 777888999999999999998777664 442 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
..||.-|+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.+... ...++..|..++.
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999999887666778999999999999999999999999999988764 4567899999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A 353 (595)
.+....+.+.|...+.++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|+. +++...+..+|...|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 78889999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
+..+.++.+..+. +.+...++..-....-.+.|..++.+-+...|+.-..+
T Consensus 269 ~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 269 LNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 9999999998776 45556677777777788899999999999999844333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-18 Score=163.44 Aligned_cols=245 Identities=23% Similarity=0.315 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 257 (595)
.|....+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677788999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
....+...+.++.+++..|...|++++|..++++++++. |.-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 112233567788899999999999999999999998763 333557888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (595)
Q Consensus 330 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (595)
++.-+..+.++|.+|..+|++++|.+.|++++++. +.....+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23447789999999999999999999999999873 33366889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+..+ .|+....+.+|+.+|..+|++++|.++..+++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8876 4555678999999999999999999999998843
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=155.97 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566777777777777777777777777777777777777777777777777777777777666665543
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~ 348 (595)
..+..+|.++...|++++|+..+++++... +.....+..+|.++...|
T Consensus 100 ------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 100 ------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred ------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 444455555555666666666666665532 344556666777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
++++|...++++++..|++...+..+|.++...|++++|..++++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776766777777777777777777777776666
Q ss_pred HhcCC
Q 007634 429 LKIDP 433 (595)
Q Consensus 429 l~~~p 433 (595)
....|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 55543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=161.64 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=203.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 221 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~ 221 (595)
.+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666999999999999999999999998 5555566667999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC----
Q 007634 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (595)
Q Consensus 222 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 296 (595)
|....++.+||.+|...|++++|..++++++++... .......++..+..++.++...+++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 445678999999999999999999999999987543 111223456677888888889999999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 007634 297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363 (595)
Q Consensus 297 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 363 (595)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|.+.|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2346689999999999999999999999999873 334678899999999999999999999998876
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 364 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555678999999999999999999999999854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=157.55 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=166.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..+|...+.++..++. .
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----~ 122 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----D 122 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----h
Confidence 34556777777777888888887778877777777777 56778888888888888777777776666655542 1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DKA 353 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---~~~----~~A 353 (595)
..++++.+++++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|..++.++... |.+ +++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 2356788888888888888888888888888888899999999999999999988998888887765 223 468
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|+++.++..|+.+|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 888889999999999999999998887 45567788999998888899899999999998763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-17 Score=152.49 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 007634 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~- 207 (595)
++.++|+..+.+++.++|++..++ ...+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW-------~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVW-------HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH-------HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 444555555555555555554442 22233333333 345556666666666666666666666555555542
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 208 -~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.++..++..-......++++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666555544321100111245677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77778888888888888888888776 3445667777777777777777777777777764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-16 Score=135.55 Aligned_cols=364 Identities=14% Similarity=0.050 Sum_probs=211.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (595)
+-++...+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 345678889999998887765544333 5667788899999999999999988888766677888889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHH--------------------HH---HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 135 AAESYHKALSADPSYKPAAECL--------------------AI---VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 135 A~~~~~~~l~~~~~~~~~~~~~--------------------a~---~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
|.....++ |+++-....+ .. -...++.+.+....|++|++.|.+++..+|+..
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88776655 3322211110 00 122345555666677777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc------------
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NF------------ 258 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~------------ 258 (595)
..-..++.+|.++.-|+-+.+.+.-.+...|+.+-+...++...++.=+-..|..-.+....-.. ..
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 77777777777777777777777777777777777666666655554222222222222111100 00
Q ss_pred ------------HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 259 ------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 259 ------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
+.....+..+-.++...|..+++..+|....+. .+|..+.-+...|.+....|+--...+.++-+
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 011111222333344445555666666555443 35556666666666666555543333333222
Q ss_pred Hh---h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 327 FH---F------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 327 l~---~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
-+ + .-+.......++.+++-..++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 21 1 11112233444555555556666666665555555555566666666666666666666666554332
Q ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 398 N-PTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 398 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
. .+.......||.||...|.++-|.+.+-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 1222334456666666666666665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-16 Score=150.52 Aligned_cols=317 Identities=14% Similarity=0.021 Sum_probs=197.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
+|+.+.++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 78888999999998888898888888888888777644 456777788888899999999999999998888775432
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007634 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (595)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (595)
. +..+..+| ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444555555444455677777888888899999999999999999999999998888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 007634 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 312 (595)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~ 312 (595)
+...|++++|+.++++++...|..+.. ....+..++.++...|++++|+..+++++...|. ........+
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----- 229 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA----- 229 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH-----
Confidence 999999999999999988887653211 1122333444444455555555555555433331 110000000
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH--H-HHHHccCC--CCHHHHHHHHHHHHhcCCHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC--Y-QMALSIKP--NFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~--~-~~al~~~~--~~~~~~~~la~~~~~~g~~~~A 387 (595)
.+...+...|....+..+ + .......+ .........+.++...|+.++|
T Consensus 230 --------------------------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 230 --------------------------SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred --------------------------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 111111112211111111 0 00000001 1112223456666666677777
Q ss_pred HHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 388 AEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 388 ~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
...++........ ........+.++...|++++|...+..++.+.
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6666665443211 24556667777778888888888888877765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-14 Score=132.89 Aligned_cols=349 Identities=15% Similarity=0.123 Sum_probs=214.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
-|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+.+++.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555666666788999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007634 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (595)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 229 (595)
... |+.....-...|+...|.+.|++-++..|+ ..+|......-.+.+..+.|...|++-+-..|+ ...|.
T Consensus 141 dql-------WyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi 211 (677)
T KOG1915|consen 141 DQL-------WYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI 211 (677)
T ss_pred HHH-------HHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence 665 444445555668888888888888887776 344444444444444455555555554444443 33344
Q ss_pred HHHHHHH-------------------------------------HcCCHHHHHHHHHHHHhcCCCcH--HHHhhHHHHHH
Q 007634 230 NMGVIYK-------------------------------------NRGDLESAIACYERCLAVSPNFE--IAKNNMAIALT 270 (595)
Q Consensus 230 ~la~~~~-------------------------------------~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~ 270 (595)
..+..-. .++.++.|...|+-++..-|.+. ..+......-.
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4444444 44455555555555555555441 11111100000
Q ss_pred HhhhhhhhcCCHHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------
Q 007634 271 DLGTKVKLEGDINQGV-----AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----------------- 328 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~-----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----------------- 328 (595)
..|+ ..-.++++ -.|++.+..+|.+.++|+..-.+....|+.+.-.+.|++++.
T Consensus 292 qfGd----~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 292 QFGD----KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred Hhcc----hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 1110 00111111 123333334455555555555555555555555555555554
Q ss_pred ---------------------------hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 329 ---------------------------FNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 329 ---------------------------~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+-|.. +.+|...|.....+.+...|.+.+-.|+-..|.+ ........+
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHH
Confidence 43332 3444444444455555555555555555555542 233333444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 5566677777777777777777777778888887778888888888887777653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=149.23 Aligned_cols=307 Identities=17% Similarity=0.094 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
+|+.+.++..+|.++...|+.+++...+.++....+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 688888888899888888888888888888887777654321 1234456667777888888888888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAA----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
.++.. +..+...|++..+.....+++ ...|.....+..+|.++...|++++|+..++++++..|++
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------- 147 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------- 147 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------
Confidence 66554 444444443333333333332 3445555666666677777777777777777766666654
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVI 343 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~ 343 (595)
..++..+|.++...|++++|+.++++++...|..+ ..+..+|.+
T Consensus 148 --------------------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 148 --------------------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred --------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 44455566666666667777777766666654322 245567777
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC--CHHHHH---HHHHHHHhcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPN--FSQSLN---NLGVVYTVQGKMDAAAEM--I-EKAIAANPT--YAEAYNNLGVLYR 413 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~ 413 (595)
+...|++++|+..|++++...|. ...... .+...+...|....+..+ + .......+. ........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 77888888888888877665552 111111 222233334433333332 1 111111122 2333346888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCC---C----hhhhhhHHHHhhhccCCCcHHHHHHHHHH
Q 007634 414 DAGSISLAIDAYEQCLKIDPD---S----RNAGQNRLLAMNYINEGHDDKLFEAHRDW 464 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (595)
..|+.++|...+.......-. . ..+....+.++.+...|+.....+.....
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999887664322 2 23455567788888999988877665443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-15 Score=132.45 Aligned_cols=375 Identities=15% Similarity=0.096 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------cCC-
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------LDP- 113 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (595)
...+..|.+++..|+|++|+..|+-+...+.-+.+.+..+|.|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 44566899999999999999999999988777889999999999999999999887665422 111
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 007634 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (595)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (595)
+..+-...++.+.+..-.|++|++.|++++.-+|+.... -..++.||++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 122344667777788889999999999999988875443 45677888889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 007634 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (595)
Q Consensus 183 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------l~~~~----~~~~~~~~ 230 (595)
.++..|+++.+...++...++.=+-..|....... ++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 99999999998888887776643322222222221 11222 14688899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 007634 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGV 308 (595)
Q Consensus 231 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 308 (595)
+...|.++++..+|+...+. ++|..+.-+...+.+...+|.-.-......-|...|+-+-+.. -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 99999999999999988764 7898888888888888888866555555666666655443221 112234556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHH
Q 007634 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 387 (595)
+++...++++.+.++...-....++....++++.+....|++.+|.+.|-+.-... .+.......+|.||...+.++-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 88888899999999999888888888999999999999999999999998765544 23355667899999999999999
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 388 AEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 388 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
-..+-+. ..| +....+..+|....+.+++--|.+.|...-.++|+.
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8776543 122 223456678888999999999999999988888864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-16 Score=141.14 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=157.6
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH-
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC- 117 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (595)
+.....++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34457889999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 118 --AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+++.+|.++... |++++|+..|++++..+|++......+ ..++.... .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~----------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R----------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H-----------
Confidence 789999999876 889999999999999999986653222 11111110 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
.......+|.++...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01223577888999999999999999999887654 57889999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-13 Score=136.29 Aligned_cols=276 Identities=16% Similarity=0.066 Sum_probs=209.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
..+.++-.+.++...|++++|++.+++....-.+....+-..|.++..+|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35678889999999999999999999988888889999999999999999999999999999999999999999998887
Q ss_pred HHcC-----CHHHHHHHHHHHHhcCCCCHHHH------------HHHHHH-------------HHHhHHHHHHhCChHHH
Q 007634 127 KDEG-----RLVEAAESYHKALSADPSYKPAA------------ECLAIV-------------LTDLGTSLKLAGNTQDG 176 (595)
Q Consensus 127 ~~~g-----~~~~A~~~~~~~l~~~~~~~~~~------------~~~a~~-------------~~~l~~~~~~~~~~~~A 176 (595)
.... +.+.-..+|+......|...... ...+.. +..+-..|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4333 56777888888877777632221 111111 11222222222222222
Q ss_pred HHHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 177 IQKYYEALKI---------------DPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 177 ~~~~~~~l~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
..++...... .|.. ..+++.++..|-..|++++|+.+++++++..|..++.+...|.++...|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 2222222211 0111 3466889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---------ADAMYNLGVAY 310 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~ 310 (595)
++.+|...++.+-.+++.+-......+..+ .+.|+.++|.+.+......+.+. .......|.+|
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~-------LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYL-------LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHH-------HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765544444444 44789999999988876654211 12335679999
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 007634 311 GEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~ 329 (595)
.+.|++..|+..|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988876
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-14 Score=147.38 Aligned_cols=160 Identities=12% Similarity=0.048 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 283 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
.+++..........|.+.+++.+||.+....|.+++|...++.++++.|++..+...++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444445567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
.+|+++..++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.....++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-13 Score=122.75 Aligned_cols=298 Identities=14% Similarity=0.058 Sum_probs=202.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~ 201 (595)
|..-+..|+|.+|.....+.-+..+...-+ +..-+......|+++.+-.++.++-+..++ ...+....+.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 334445566666666666655544443222 344445555566666666666666666333 345556666677
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhhhhhcC
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 280 (595)
...|+++.|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+.. ....--.++..+=+-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777777777777777777777777777777666665544322211 11111111111111111112
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
..+.-...++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 222223344444444455688888999999999999999999999998755433 222222 23567889999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 778899999999999999999999999854
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-13 Score=129.34 Aligned_cols=337 Identities=15% Similarity=0.058 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
.++.--..+...|+|++|++...+++...|++..+....-.+..+.++|++|+...++-......+. ..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~--------~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS--------FFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch--------hhHHH
Confidence 3333344566789999999999999999999999999999999999999999955554322111111 12677
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------- 221 (595)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+.+++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 889999999999999998 4566677788999999999999999999999885422
Q ss_pred --------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 222 --------P-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 222 --------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
| ++.+.+++.+.++...|+|.+|++.+++++++ +.........+..+...++.++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 14578899999999999999999999999443 333355666777888888889999999999
Q ss_pred HHHHHHHHHhhCCCCHHHH-------------------------------------------------HHHHHHHHhcCC
Q 007634 285 GVAYYKKALYYNWHYADAM-------------------------------------------------YNLGVAYGEMLK 315 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~-------------------------------------------------~~la~~~~~~~~ 315 (595)
|...|...++.+|.+.... .+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998876553211 111111122222
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+.+.+.....-...|....-.............+.+|.+.+....+.+|.+ ..+...++.+...+|+++.|++.+...
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222221111111122221111222222233337888999999988888887 678888999999999999999999833
Q ss_pred H--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 395 I--------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 395 l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+ +.. ..+.+-..+-.++...++.+.|...+.+++...
T Consensus 403 ~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 403 LESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 3 222 234555566667778887777777777777643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-16 Score=138.60 Aligned_cols=294 Identities=22% Similarity=0.273 Sum_probs=219.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~ 195 (595)
-|.-+++.|++...+.+|+.+++...++.. .+..+|..+|+.|...++|++|+++-..-+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 366677888888888888888887766543 36667888899999999999988875443322 223455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~ 249 (595)
++|.++.-.|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 889999999999999988877765432 235788999999987764 234455555
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
.-+++..... .....+.++..+|+.|...|+++.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 5444433322 234557788999999999999999999888777664432 347889999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 324 ELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 324 ~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
++.+.+. ...+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9887652 22366788999999999999999999998887643 34668899999999999999999998
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCHH
Q 007634 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 419 (595)
++.+++. +. ...+..++...-..+|..+
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 8887652 22 2346667777666666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-12 Score=119.01 Aligned_cols=298 Identities=14% Similarity=0.011 Sum_probs=210.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGIL 125 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 125 (595)
.+......|..-+..|+|.+|.....+.-+..+...-++..-+.+.-++|+++.|-.++.++-+..++ ........+.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 34556667888888999999999999988877777788888899999999999999999999998554 45678888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHH--H
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGV--V 200 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~la~--~ 200 (595)
....|+++.|..-..++++..|.++.. +.....+|...|++.+...++.+.-+..--+.. -+-+.+. +
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 555667778889999999998887765432211 1111111 1
Q ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 201 YSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 201 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+.+.++ .+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. +...+-. .
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~-----l 305 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR-----L 305 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----c
Confidence 112222 22222344444334445678888888888999999999999999887755432 1111111 1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+++.+++..|+ ...+..+|.++.+.|+..+|.+++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 2356666666666666666666666666666666666666666666666665554 455666666666666666666666
Q ss_pred HHHHc
Q 007634 358 QMALS 362 (595)
Q Consensus 358 ~~al~ 362 (595)
++++.
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 66653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=134.54 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=146.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007634 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (595)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 153 (595)
.++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++...
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788999999999999999999999999999999876 5789999999999999999999999999999877641
Q ss_pred HHHHHHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 154 ECLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 154 ~~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
.+++.+|.++... |++++|++.+++++..+|++..++..+..+....+ . ..
T Consensus 108 ----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~ 166 (235)
T TIGR03302 108 ----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LA 166 (235)
T ss_pred ----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HH
Confidence 2356666666654 78999999999999999998766543332221110 0 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhhhhhhhc
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 279 (595)
.....+|.++...|++.+|+..+++++...|+. ..++..++.++..+|+.....
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 234578899999999999999999999997764 478899999999988765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=146.84 Aligned_cols=288 Identities=14% Similarity=0.090 Sum_probs=224.7
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 357889999999999999999999999999999999999999999999999999998877766 555554443
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 344 5666666666667888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
... +.++|+.++.+++... ...+++.++.+++.+.+..+|.+.+.+..+-......-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 999 9999999999998651 224588999999999999999987765544333222211
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+..+ ...+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..+
T Consensus 219 ~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 219 FTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred cchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 2222 3455556677788889999999999999999999999999999887 33333 44444444
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++. .+-..-..+..|+..|++.+..+|.+--
T Consensus 282 ~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 282 KMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred HHh-----------ccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 431 1111124567888888888888887643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=126.32 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555666665553 4455666666666666666666666666666666666666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66666666666666666666666666666666666666555433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-13 Score=146.69 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=275.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (595)
.-..|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344566788899999888766554111 1112445556777788888887777665431 11123455667788888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 007634 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~ 202 (595)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111123445567888899999999999999999864442 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhh
Q 007634 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~ 275 (595)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999876432210 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~----~~la~~ 343 (595)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+.. .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999999998875322 24466778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (595)
+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999887665332222 2256789999999999999999999988621 23467889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=124.41 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=136.52 Aligned_cols=270 Identities=24% Similarity=0.310 Sum_probs=210.4
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAAL------ERPMYAEAYCN 230 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~ 230 (595)
..-|.-+.+.|+....+..|+.+++...++ ..+|..+|.+|+.+++|++|+++-..-+. ..-..+..--+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 345677788899999999999999997775 45678899999999999999997654332 22234566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHHHH
Q 007634 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (595)
Q Consensus 231 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 290 (595)
+|.++..+|.|++|+.+..+-+.+...-. ....-+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988877654432 223345566677766665443 455666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 291 ~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.-+++.... ..++-++|..|+.+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666554332 346788999999999999999998877776432 24688999999999999999999999
Q ss_pred HHHccC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 359 MALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 359 ~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
+.+.+. ...+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987653 22356789999999999999999999999887632 235789999999999999999999988
Q ss_pred HHHhc
Q 007634 427 QCLKI 431 (595)
Q Consensus 427 ~al~~ 431 (595)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-13 Score=130.40 Aligned_cols=312 Identities=12% Similarity=0.023 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+.+.++....++...|++++|++.+++....-.+....+...|.++..+|++++|...|...+..+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999998888999999999999999999999999999999999999988755544433
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
.... -....+.+.-...|++.....|....... +...+..-..+.. +..++...+.. .-|.....+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 2111 01123567778888888888877433322 2222222223333 33344444433 45666666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
+..-....+...... ... . ......+.++++.++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332221 100 0 111122345667777777778899999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CC-------HHHHHHHHHHHHh
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NF-------SQSLNNLGVVYTV 380 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~-------~~~~~~la~~~~~ 380 (595)
+...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|.+.+......+- .. .+.....|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999998887765542 11 2344567889999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 007634 381 QGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (595)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999999888776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-13 Score=115.25 Aligned_cols=360 Identities=16% Similarity=0.142 Sum_probs=247.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (595)
..+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|......+..+..+++.+.+..|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----------------CCCCH----HHH-----HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 136 AESYHKALSA----------------DPSYK----PAA-----ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 136 ~~~~~~~l~~----------------~~~~~----~~~-----~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
+......... ..++. ... ..-+....+.|.+.++.|+++.|++-|+.+++...-.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8877655431 00000 000 0112345667778888899999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------------C---------HHHHHHHHHHHHHcCCH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALE----RPM----------------Y---------AEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~----------------~---------~~~~~~la~~~~~~~~~ 241 (595)
+..-++++.++++.|+++.|+++..+.++. .|. + .+++...+-++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 888889999999999999999888777653 232 1 24566677788888898
Q ss_pred HHHHHHHHHHHhcCCCc-----HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 007634 242 ESAIACYERCLAVSPNF-----EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 316 (595)
+.|.+.+.. +.|.. +....+++.. + ..+++.+...-+.-.+.++|-..+.+.++-.+|++..-+
T Consensus 258 eAA~eaLtD---mPPRaE~elDPvTLHN~Al~--n------~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 258 EAAQEALTD---MPPRAEEELDPVTLHNQALM--N------MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred HHHHHHhhc---CCCcccccCCchhhhHHHHh--c------ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 888776543 33332 2222222221 1 145677778888888888888888888888888888777
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHH-HHHHh--cC---CH
Q 007634 317 DMAIVFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--QG---KM 384 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~--~g---~~ 384 (595)
+-|-..+.+ +|+. ....+.+-..+. ..-..++|.+-+...-.. ...-+..++ .+... .+ ..
T Consensus 327 ~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 327 DLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHH
Confidence 777665533 3332 122233333222 234555555544433221 111111111 11111 11 12
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.+|++.|++++++. ..+....+++|+...++..+.+.|+...+...++.
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 34555666666542 44677889999999999999999999988877654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-14 Score=122.43 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=130.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 353 (595)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566778777644432221 1110 111367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+++++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred cCCCChh
Q 007634 431 IDPDSRN 437 (595)
Q Consensus 431 ~~p~~~~ 437 (595)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9988653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=115.53 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=163.2
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
....++..-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 34467999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKID 432 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 432 (595)
.+...++..+.+.++|..++.+|...|++++|.-++++.+-++|.++-.+..+|.+++-+| +.+-|.++|.++++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998877 6788999999999999
Q ss_pred CCChhhhhhHHHHhhhcc
Q 007634 433 PDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 433 p~~~~~~~~~~~~~~~~~ 450 (595)
|.+..++....++.+.+.
T Consensus 222 ~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSALA 239 (289)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 988888888777666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-12 Score=139.37 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---------cHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (595)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4445567777888888887777665411 11234456677888889999999999999988764321 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~ 192 (595)
...++.++...|++++|...+++++...+.... ...+.....+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223344677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 5678899999999999999999999875221 23345678899999999999999999998875432211 1
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--- 334 (595)
....+..++.+....|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23456667888888999999999999987653321 1111 1122445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 335 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999987632 23457888999999999999999999999998654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=140.67 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=185.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH
Q 007634 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (595)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (595)
.+|.+..++..+...+...+++++|+...+.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 37888999999999999999999999999999999999999999999999999998887766 666555543
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
.++ .+++++...+...+.+..+++.+|.+|-.+|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55566666666677788899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH--------------------H
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~ 405 (595)
.. +.++|++++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 99 999999999999876 666778888888888888888876543 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (595)
.-+-..|...+++++++.+++.+++++|+|..++....
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788889999999999999999999988877753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=119.60 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 355 (595)
.++.++++..+++++..+|++.+.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
.++++++.+|++..++..+|..+...|++++|+.+++++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999988654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-11 Score=116.43 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
-+..++...+.+..+|+...-...|.+++..-|- +..+|-..-......+-.+-++..|++.++..|...+ ....
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie 177 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIE 177 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHH
Confidence 3567888889999999999999999999988773 4456666666667778888999999999999997643 3345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHH-------------------------------HHHHHHHHhHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSAD-------PSYKPAAE-------------------------------CLAIVLTDLGTS 166 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~-------------------------------~~a~~~~~l~~~ 166 (595)
.+...+++++|.+.+...+..+ +.+...+. .++.+|..|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6777889999988888776432 12222211 234567778888
Q ss_pred HHHhCChHHHHHHHHHHHhh
Q 007634 167 LKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~ 186 (595)
|.+.|.+++|...|++++..
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88999999999988888765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-12 Score=106.59 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44445666667777888899999999999988888999999999999999999999999999999999988876555433
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+... +|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|-++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 45666888888888888888888888888888888888888888888888888888888888887777
Q ss_pred cC---CHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 347 ~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+| ++.-|.++|.++++++|.+...++.+-.+
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 66 56677788888888888766666655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-13 Score=113.79 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 143 (595)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666677778889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 144 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
...|++... +..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.
T Consensus 128 ~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 128 RLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 999999887 7888888888999999999999999999999999999999999999999999999999999898
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
+..+..+++.+....|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999999999887655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-13 Score=113.76 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++....|++.++|..+|.+|.+.|++++|...|.+
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH
Confidence 34445555555555555555566666677777777777777777777777777777777777777777777777777777
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
++++.|..+.+..|+|..+.-.|+++.|..++..+....+.+..+..+|+.+...+|++++|...-.+
T Consensus 160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77777777777777777777777777777777777776666777777777777777777777765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-13 Score=129.38 Aligned_cols=226 Identities=19% Similarity=0.145 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
|........++.++...|-...|+..+++ ...|-....+|...|+..+|.....+-++. |.++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~------- 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPR------- 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcch-------
Confidence 33456677899999999999999999998 467788889999999999999999998884 44433
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 3444554444444566666655543 3456777788888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
++++.|.++|..++.++|++.++|.+++..|...|+..+|...++++++.+-++..+|.|.-.+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHhcCCCC
Q 007634 428 CLKIDPDS 435 (595)
Q Consensus 428 al~~~p~~ 435 (595)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 98765433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=112.66 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|..++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-12 Score=134.03 Aligned_cols=148 Identities=8% Similarity=-0.050 Sum_probs=104.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 73 IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 73 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
......|.+++++..+|.+....|.+++|+..++.+++..|++..++..++.++.+.+++++|+..+++++...|++...
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 33445666777777777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007634 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 227 (595)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-...
T Consensus 157 -------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 157 -------ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred -------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 55555566666777777777777777777777777777777777777777777777777665543333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-09 Score=104.01 Aligned_cols=373 Identities=17% Similarity=0.149 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCHHH-----HHHHHHHHHHhC-------------CHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEA-----HIGKGICLQMQN-------------MGRLAFDSFS 106 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~-----~~~la~~~~~~g-------------~~~~A~~~~~ 106 (595)
+..+..+|..|.+.|.+++|...|++++..-- +...+ .+.-..+...++ +.+-....|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 45677899999999999999999999987532 22111 111111111111 1223344444
Q ss_pred HHH------------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhHHHHHHhCCh
Q 007634 107 EAV------------KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (595)
Q Consensus 107 ~al------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~a~~~~~l~~~~~~~~~~ 173 (595)
..+ ..+|++..-|.....++ .|+..+-+..|..++. .+|.-. .-....++...|..|...|+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcH
Confidence 433 45777777777665554 6778888888887765 455533 223455688888888888888
Q ss_pred HHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHH
Q 007634 174 QDGIQKYYEALKID-P---HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM------------------YAEAYCNM 231 (595)
Q Consensus 174 ~~A~~~~~~~l~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~l 231 (595)
+.|...|+++.+.+ + +-..+|...|..-....+++.|+++.+++...-.. +..+|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 88988888888763 2 24778888888888888888888888887643211 24577888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHH---
Q 007634 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNL--- 306 (595)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l--- 306 (595)
+.+....|-++.....|++.+++.--.|....+.+..+.. ...++++.+.|++.+.+.+ .-.++|...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-------h~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-------HKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 8888888888888888888888877666665555554444 5678888888888888764 344554433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc---
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--- 381 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--- 381 (595)
...-+...+.+.|..+|+++++..|.. -.++...+.+-..-|--..|+..|+++-..-+.. -.+.+=.+|...
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHH
Confidence 223333446888888999998887632 2355566777777788888888888876553321 111111222211
Q ss_pred -CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 382 -GKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 382 -g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
=-.......|+++++.-|+. .+.....+..-.++|..+.|...|.-+-++.|
T Consensus 635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 11234567788888887765 35566778888888889999888888888754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=119.02 Aligned_cols=114 Identities=29% Similarity=0.473 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (595)
.+|++++|++.|+++|+++|++...+.++-.+-.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999877777644433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=106.64 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=87.1
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 328 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888888776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=126.31 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=192.9
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
-..++..+...|-...|+..|++ ...|-....+|...|+..+|.....+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 34567778888999999999987 46677889999999999999999999988 6777899999998888877
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777777766532 223444555556678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
.+.|..++..+|++.++|++++..|...++-.+|...++++++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-13 Score=108.77 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=121.13 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.... .++.+|.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHH
Confidence 445556677777888888888887654 557777888888999999999999998888777665433 3333333
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.+.. ..+.+.+|...|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3210 0235666666666665555555666666666666666666666666666666666666666666665555555
Q ss_pred -HHHHHHHHHHHccCCCCH
Q 007634 351 -DKAVECYQMALSIKPNFS 368 (595)
Q Consensus 351 -~~A~~~~~~al~~~~~~~ 368 (595)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 444455555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-13 Score=115.77 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..++.+-..|..+++.++|.+|+..|.++|+.+|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
|..+|++.+|++.|+++++++|++...
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 999999999999999999999999865
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=120.41 Aligned_cols=259 Identities=18% Similarity=0.095 Sum_probs=191.4
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
.++..|+|..++.-++ ....++. .......+.+++..+|+++..+..+.. ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999997776 2233332 355677889999999999877665543 2233355666777777665677777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (595)
+..++..+......... .+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766654332221111 12333455666689999999988764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 325 ~~l~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
.+.+.+.+..-.....+++....| ++.+|...|++.....+..+..+..++.++..+|++++|...++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 998888877666666666666666 699999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 007634 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 438 (595)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899998744
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-12 Score=101.28 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+-+.++..|..++..|++++|..+|+-+...+|.+...|+.+|.|+..+|++++|+..|.+++.++|+++..++..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
|++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998744433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=101.19 Aligned_cols=303 Identities=18% Similarity=0.138 Sum_probs=230.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+.+..+|..|++++..-.+.+|.+... +..+|.||+...++..|..+|++.-...|......+..+..+++.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 366778999999999999999987665 7788999999999999999999999999998888888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
.+..|+...........-.......-+-+.+..+++..+....++.-.. +. +....+.|-+..+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHH
Confidence 9999999887765442223445555666777788888887766654211 11 33455667777778999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC-------------------------HHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC-------------------------AEA 336 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~-------------------------~~~ 336 (595)
++-|+.+++...-.+-.-++++.+++..++++.|+++..++++. .|.. .++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 99999999999989999999999999999999999998888765 2321 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
++..+-++++.++++.|.+.+.. +-|. ++..+.+++..- ..+++.+...-+.-.+.++|--++...++-.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHH
Confidence 67778888999999998876643 3332 366777777654 34677788888888889999778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCh-----hhhhhHHHHhhhccCC
Q 007634 412 YRDAGSISLAIDAYEQCLKIDPDSR-----NAGQNRLLAMNYINEG 452 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~ 452 (595)
|.+..-++.|.+.+. -+|+.. ....+++-++.+....
T Consensus 320 yCKNeyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~ 361 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTA 361 (459)
T ss_pred HhhhHHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence 999888887776543 344432 2233444455555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-10 Score=103.09 Aligned_cols=183 Identities=12% Similarity=0.040 Sum_probs=134.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---H
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (595)
...+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|+++ .
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34678889999999999999999999999999999988654 58999999999999999999999999998764 5
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 007634 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
+++.+|.++...+ + ..+|+..|++.++..|+..-+... ...+ ..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~rl--------------~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKRL--------------VF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHHH--------------HH
Confidence 7888888764443 1 357889999999999986543111 1100 11
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 180 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
++..+ ..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|......
T Consensus 170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111 2223456677777777777777777777776653 56677777777777777777665544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=100.75 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=121.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (595)
.+.+.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998875 47899999999999999999999999999999864 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 007634 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (595)
+.+|.++.... ...+|+..|+..+...|++.-+.... . -+..++..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~----~--------------~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK----K--------------RLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH----H--------------HHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH----H--------------HHHHHHHHH----
Confidence 88888876543 34589999999999999875432110 0 001111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A 244 (595)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..+..+|..+.|
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2223446666777777777777777777776664 34566666777777766643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-10 Score=104.57 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=139.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
+|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+..+|.+.+++++...|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 378889999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
..++|..+...|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence 677788888889999999999999999999999999999999999987776554 4556777
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 007634 238 RGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~ 257 (595)
.|++++|+..+..+.+....
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999998887643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-09 Score=104.24 Aligned_cols=327 Identities=17% Similarity=0.183 Sum_probs=220.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHc---CCCcHHHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS--------EAVKL---DPQNACAHTHCGILY 126 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~la~~~ 126 (595)
|...|+.+.|.+..+-+ .+...|-++|....+..+.+-|.-++- ++++. +|+ +.-...|.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 34568888887776544 234678888888887777776655443 12222 333 3334567778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
..+|..++|..+|++.-. +-.+-..|...|.+++|.+..+.-=.+ .--..|++.+..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 889999999999998855 334456677889999998876542221 124678899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 207 ~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 23333 2456788889999999999999999987643
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-------
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~------- 333 (595)
++.+-++.+-+|+.++|..+.++. .+..+.+.+|..|...|+..+|+..|.++-.. ..++
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344455556677777777665543 45667778888888888888888877766432 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hc-----------------cCC-CCHHHHHHHHHHHHhc
Q 007634 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 334 -------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l~-----------------~~~-~~~~~~~~la~~~~~~ 381 (595)
+.-....|..|...| +...|...|.+| ++ ++| .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111122334444444 555555544432 11 133 3577888888889999
Q ss_pred CCHHHHHHHHHHH------HHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 382 g~~~~A~~~~~~a------l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.+|++|...+-.+ +.+ .|. ...++..+|.++.++|.|..|.+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999998766544 332 111 1357889999999999999999888765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-10 Score=107.22 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCc
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 454 (595)
+|.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+.+.+.+.-+-..+......+......+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999999988877776666665555555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=115.00 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.|++++|+..|++++.++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999988754433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=98.87 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
.++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788999999999999999999999999999988654 4899999999999999999999999999998765
Q ss_pred HHHHHHhHHHHHHhC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (595)
Q Consensus 157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (595)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666543332 1356778888888888886432 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhh
Q 007634 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (595)
Q Consensus 219 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~ 275 (595)
...-..--+..|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133445789999999999999999999999998765 5566677778777743
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-11 Score=113.28 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
+...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888888887776555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=95.67 Aligned_cols=175 Identities=23% Similarity=0.214 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 56789999999999999999999999999998875 5689999999999999999999999999999997754 3
Q ss_pred HHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007634 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 226 (595)
.+++.+|.++... +...+|+..|+..+...|++..+- +|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577777777777777754332 12121111111 1134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHhhHHHHHHHhhhhh
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNNMAIALTDLGTKV 276 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~l~~~~ 276 (595)
--+.+|..|.+.|.+..|+..++.+++..|+.+. +...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4567899999999999999999999999999764 5566677777777543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=103.36 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------
Q 007634 335 EACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------ 401 (595)
Q Consensus 335 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 401 (595)
..+..+|.+|... |++++|+++|++|+...... ...+..+|.++...|+|++|++.|++.....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3455667777776 77777777777777663211 3466778888888889999999888887753221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH--hhhccCCCcHH
Q 007634 402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA--MNYINEGHDDK 456 (595)
Q Consensus 402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~~~ 456 (595)
...++..+.|+...||...|...+++....+|.....+...++. +.-+..++.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 24556778888999999999999999999999877665554332 33334444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-09 Score=94.16 Aligned_cols=280 Identities=14% Similarity=0.163 Sum_probs=162.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNL 197 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~l 197 (595)
..+...+|.|++++.+--..+....+..+. ..+-.++.+++..+....++.+++.+....+.+.... ..+...+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 344455555555544433333322221111 1223447777888888888999999888887764332 3567779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHH
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA 268 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~ 268 (595)
+..+..++.++++++.|+++++...++ ..++..+|.++....++++|.-+..++.++..... ........+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 999999999999999999999875432 35788899999999999999999999987754322 111122334
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
++.++..+..+|..-.|.++.+++.++.-...+ .+-.......+|.+|...|
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd----------------------------ra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGD----------------------------RALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC----------------------------hHHHHHHHHHHHHHHHhcc
Confidence 444444455555555555555555433110000 1112333444555555555
Q ss_pred CHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHhCCCc------HHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVL 411 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~ 411 (595)
+.+.|..-|+.+...-.. ..+++...+.++....-..+ |++.-++++++.... ...+..++.+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555555555433111 12344444444443333333 666666666553221 3466777888
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 007634 412 YRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~ 431 (595)
|..+|..++-...+.++-+.
T Consensus 341 Yrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 87777777777666665544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=90.84 Aligned_cols=106 Identities=24% Similarity=0.300 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 407 (595)
+..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3466777777777778888888887777777665 4577778888888888888888888888777664 567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+|.++..+|++++|..+++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 88888888888888888888888888776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=90.18 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (595)
++.++..|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-09 Score=94.38 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--C----
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--Y---- 299 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 299 (595)
+++.+++..+.+..++.+++.+-+..+.+....+. ..-+.....++......+.++++++.|++++....+ +
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 34444555555555555555555444443222210 001122222333333344555555555555544211 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEACNNLGVIYKDRDNLDKAVECYQMALSIK----- 364 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 364 (595)
..++..+|.++....++++|..+..++.++-.. + .-+++.++..+..+|+...|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 346677777777888888888777777765221 1 3467788999999999999999999998773
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhcC
Q 007634 365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISL-----AIDAYEQCLKID 432 (595)
Q Consensus 365 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~ 432 (595)
+........+|.+|...|+.+.|..-|+++...... ..+++...+.++....-..+ |++.-++++++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 334567788999999999999999999999876321 24677777777776555444 888888888775
Q ss_pred CCCh----hhhhhHHHHhhhccCCCcHHHH
Q 007634 433 PDSR----NAGQNRLLAMNYINEGHDDKLF 458 (595)
Q Consensus 433 p~~~----~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
..-. .......++..|-..|..++.-
T Consensus 322 ~~IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 322 SSIGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 5432 2233344566665666555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=89.94 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=134.7
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
.+..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+--|++.-|.+-+.+..+.+|+++.-...+ |.. ...-++.+|...+.+-.+...+....|...+ ...|+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL---Yl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgk 212 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWL---YLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGK 212 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHH---HHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhh
Confidence 999999999999999999999988432211 111 1133666776555433332222222222222 12222
Q ss_pred HHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 316 FDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
..+ ...++++.....++ .+.++.+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 211 12222222222222 345566666666666666666666665544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-06 Score=86.55 Aligned_cols=200 Identities=18% Similarity=0.066 Sum_probs=137.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
.++-..-....+++.+|+..+.+++++.|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 33444456788999999999999999999999999999999999999999998888877778888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-----------------
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA----------------- 193 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~----------------- 193 (595)
++++|..+|++++..+|+ .+.. ..+-.+|.+.+.|.+-.+.--+..+..|+.+..
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell-------~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELL-------YHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 4442 222233333333333222222222222222111
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHHcCCHH
Q 007634 194 -----------------------------YYNLGVVYSELMQYDTALGCYEK-AAL-ERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 194 -----------------------------~~~la~~~~~~g~~~~A~~~~~~-al~-~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
....-.++..+|++++|...+.. ..+ ..+.+..........+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 11112344456777777777732 222 23334444445566667777777
Q ss_pred HHHHHHHHHHhcCCCc
Q 007634 243 SAIACYERCLAVSPNF 258 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~ 258 (595)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=93.87 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=102.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHH
Q 007634 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (595)
+-.+.|..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44556777888887776666655 5678999999999999999999999999887663 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 999999999999999999888888888888888878888775554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=97.23 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 392 (595)
.+.-+.-++.-+..+|++++-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777777788888888888888888888888888888888888888888888888876554 4678888899
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+++..+|++..+.+.||..++..|++.+|...++..+...|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-10 Score=103.14 Aligned_cols=174 Identities=20% Similarity=0.150 Sum_probs=108.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--C----CHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H----YAPAYYN 196 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~----~~~~~~~ 196 (595)
|.+|...|++++|..+|.++....-.... ....+..+...+.++... ++++|+.++++++.+.- + -...+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~-~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGD-KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45555666666666666666544322111 122344455555555444 77777777777776521 1 2456788
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 197 LGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 197 la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
+|.+|... |++++|+++|+++++.... ...++..+|.++...|+|++|++.|++.....-++..........+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 89999998 9999999999999886321 2457788999999999999999999999876554433233333444
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
...+.++...|++..|...+++....+|.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555555566666666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-07 Score=82.78 Aligned_cols=301 Identities=19% Similarity=0.109 Sum_probs=219.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~ 200 (595)
-|.+....|+-..|.+.-.++-++-..+.+... ...-+......|+++.|.+-|+.++. +|. ..-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLI-----hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLI-----HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHH-----HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 355666778888888888887755444444322 33334555667999999999988875 333 22222233333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhhhhhhhc
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 279 (595)
-...|..+.|+.+-+++....|.-+.++...-...+..|+++.|++..+......--... +....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 456899999999999999999999988888888889999999999998876543211111 1111122221111 11224
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
.+...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 578899999999999999999999999999999999999999999999988753 2 33444443333444444444
Q ss_pred ---HHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 007634 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 360 ---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 435 (595)
...+.|++.+.....+...+.-|++..|..--+.+....|. ..++..++.+-... |+-.+...++-+++.- |.+
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A-Prd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCC
Confidence 44568999999999999999999999999999999999997 66788888888776 9999999999999874 444
Q ss_pred h
Q 007634 436 R 436 (595)
Q Consensus 436 ~ 436 (595)
+
T Consensus 396 P 396 (531)
T COG3898 396 P 396 (531)
T ss_pred C
Confidence 3
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=82.29 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (595)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777777777777777777 57777777777777776
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=95.37 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=98.4
Q ss_pred CCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHH
Q 007634 45 GFEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NAC 117 (595)
Q Consensus 45 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 117 (595)
+.+....+..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+++..|++++|+..|+++++..|+ .++
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34667888898876 67899999999999999999998 589999999999999999999999999998887 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
+++.+|.++...|++++|...|+++++..|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999997654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=94.99 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 356 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~ 356 (595)
...+..+.-++..+..+|++.+.|..||.+|...|+++.|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 357777888889999999999999999999999999999999999999999999999999999988754 57889999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
++++++.+|.+..+.+.||..+++.|++.+|...++..+...|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=84.86 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777788877778888888888888777777777777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 007634 416 GSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (595)
|++++|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888887777663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=92.22 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344455555555555555555555555443331 2345555555555555555555555555555555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHHhcCCCChh
Q 007634 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~ 437 (595)
++. .+|+++ +|..+|++++..+|++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 554 444544 566666677777776543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-08 Score=100.83 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
.+..+-|++.+..+|+..-.|........+.++.++|.+..++++.. ++...+-..++-.+|.++-..| |.-+...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 34456677777788888888888888888888888888888888764 4444444444444555544333 4556667
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+.|+++.+... ....+..|..+|...+++++|.++|+..++...+...+|..+|..++.+++-+.|...+.+|++.-|.
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 77777776542 24577888889999999999999999999988888899999999999999999999999999998887
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 367 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 367 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
+.+.....|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.++..|++++.+.=.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 77888889999999999999999999999999999999999999999999999999999999886533
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-09 Score=86.56 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=95.8
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 385 (595)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5778888888888888888887 5667788899999999999999999998877654 457788899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344456788889999999999999999998875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=91.96 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 374 (595)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345577888888888888888888888888776543 46788888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
|.++...|+...+...++.++. .+++|.+++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777666655543 26788889999999988873
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-08 Score=82.54 Aligned_cols=169 Identities=14% Similarity=0.034 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
......-|.++...|++++|++...+. .+.++...-..++.++.+.+-|...++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345555677888999999999888763 345666677788889999999999999998877653 3445666666
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.++. ..+.+.+|.-+|++.-+..|..+..+..++.++..+|+|++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 6542 2345788888888888877777888888888888888888888888888888888888888888888777776
Q ss_pred HHHHH-HHHHHHccCCCCHH
Q 007634 351 DKAVE-CYQMALSIKPNFSQ 369 (595)
Q Consensus 351 ~~A~~-~~~~al~~~~~~~~ 369 (595)
.++.+ .+.+....+|+++.
T Consensus 258 ~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hHHHHHHHHHHHhcCCcchH
Confidence 55543 44555555666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=80.18 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (595)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777777777777777777777777776 57777777777777665
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=86.42 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=99.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.+...-+..+..|..++.+|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 33456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
|.|++..|+...|..+|+.++. .|.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999998 45543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.4e-06 Score=76.59 Aligned_cols=385 Identities=13% Similarity=0.073 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC---CCc---
Q 007634 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN--- 115 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~--- 115 (595)
.+.++.+|+.+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456777888888888 8888888888888776654 345566666554 5677888888888887653 222
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------
Q 007634 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---------- 183 (595)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---------- 183 (595)
..+...++.+|.... .+..|...+++++++....+-. -...++.++.......++..|++.+.-.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345667777777766 7788888888888877665532 2334566666666666666666553211
Q ss_pred ---------------------------------HhhCCCC-------HHHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 007634 184 ---------------------------------LKIDPHY-------APAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (595)
Q Consensus 184 ---------------------------------l~~~~~~-------~~~~~~la~-~~~~~g~~~~A~~~~~~al~--- 219 (595)
.+....+ -..+..+-. .|...|+...+...+++.-+
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 1111111 011222222 23345665555555554321
Q ss_pred h-CCC------------CHH-----------HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCc-------HHHHhhHH
Q 007634 220 E-RPM------------YAE-----------AYCNMGVI--YKNRGDLESAIACYERCLAVSPNF-------EIAKNNMA 266 (595)
Q Consensus 220 ~-~~~------------~~~-----------~~~~la~~--~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~ 266 (595)
. .+. .+. ++..+-.+ -...|-+++|.++-++++....+. +.......
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 011 11111111 123566778888777777552221 11111122
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYN---WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~-- 333 (595)
..+..+..+-...|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.-.. +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 233444555566899999998888777653 43 2457788898889999999999999999887433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c-
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y- 401 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 401 (595)
+.+..++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 44557889999998876555444443 34432 346777888889999999999999999987521 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 402 ----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 402 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.-.+..|+.+....|+..++.+..+-++++....++.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 3456778999999999999999999998876554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-08 Score=82.37 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 346677888888888999999999999999999999999999999999999999999999999999987665 5
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
.+.|..++.-|++.-|.+-+.+-.+.+|++|---..+- +-...-+..+|...+.+-.+...+....|...+.. .|+
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lgk 212 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGK 212 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhh
Confidence 56666777779999999999988888888764322221 12233456666655544333322223333332222 222
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
..+ ...++++..-..++...-..+..+++.+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 211 233444444444555445555666666777777777777777777666644
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=78.29 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777788888888888888887787778888888888888888888888888877777764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-09 Score=85.23 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (595)
....+..+......++...+...++++++.+|++ ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4566777777788999999999999999999998 5688889999999999999999999999987665 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
++.++...|++++|+..++.. . +... .+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999662 1 1111 13346778899999999999999998764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-10 Score=83.67 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
.+|+|++|+..++++++.+|. +...++.+|.|++..|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 378999999999999999995 466788899999999999999999999 88889898999999999999999999999
Q ss_pred HHHHH
Q 007634 138 SYHKA 142 (595)
Q Consensus 138 ~~~~~ 142 (595)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=87.16 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44445666777777777888888888887777777777788888888888888888888888888777777777788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.|+..+|+.+.|+.+|..+++ .|.+...
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 888888888888888887777 4554433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-07 Score=81.84 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---H
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---C 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 117 (595)
....+..++..|...++.|+|++|+..|+.+....|.+ ..+.+.++.++++.+++++|+..+++.+++.|+++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 44678999999999999999999999999999998875 47899999999999999999999999999999765 4
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKDEG--------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~~g--------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++..|.+++..= -..+|+..|+..+...|++.-+..... =+..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~------------------~i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA------------------RIVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH------------------HHHHHHHHH-----
Confidence 6777787766532 245788889999999998653311111 111111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
..--...|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 1122345666666666666666666666655442 3455566666666666666655443333333333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-06 Score=80.29 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=102.7
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV-IYK 236 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~ 236 (595)
....+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 34444444555555555555555554 455555556666666666666666666666666655554333444444 566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 316 (595)
..|+++.|...+.+++...|. .. .........+..+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 142 ELGDYEEALELYEKALELDPE----LN----------------------------------ELAEALLALGALLEALGRY 183 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCC----cc----------------------------------chHHHHHHhhhHHHHhcCH
Confidence 666666666666666554432 00 1122222222234444444
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 317 DMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+.|+..+.+++...+. ....+..++..+...+++.+|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444 344455555555555555555555555555555444444444444444444555555555555
Q ss_pred HhCCC
Q 007634 396 AANPT 400 (595)
Q Consensus 396 ~~~p~ 400 (595)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 55554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=82.68 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (595)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 007634 130 GRLVEAAESYHKALSADPS 148 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~ 148 (595)
|++++|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.6e-09 Score=102.71 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=118.7
Q ss_pred hCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 007634 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (595)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al 361 (595)
..|.+..+| +..|.-+...+. ...|+.+|+++++.+|+++.++..++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345565544 455666655544 789999999999999999999999888775532 3456666777766
Q ss_pred cc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 362 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.+ +|..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|.+.|++|+.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 64 6777889999999999999999999999999999995 8899999999999999999999999999999998853
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=77.68 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666777777777777777777777777777777777777777777777777777776653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-07 Score=82.39 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=174.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhhhhhhhc
Q 007634 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (595)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 35555666666666666554 356666677777777777777777777665 333332 3334444444445
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
+++..++..+..+....+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 56777777777777766665555555555 89999999999999999988776 456677777777889999999999
Q ss_pred HHHHHHccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 356 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...|+.+++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 79999999999999999999999999999999987788888888888888899999999999999998
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-09 Score=88.98 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--- 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL--- 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH---
Confidence 455677888888888888888888888888776653 45788888888888888888888888888888776663
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 224 (595)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ----~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 ----NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ----HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 3444444444554444433333321 2456666666666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=95.07 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHcCCC
Q 007634 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (595)
Q Consensus 50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (595)
.++..|...+..+ ..+.|+.+|.+++ +.+|+.+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566666665554 3456777788888 77777788888888777654 1334567777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
++.++..+|.+....++++.|...|++++.++|+...+ ++..|......|+.++|.+.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777776555 55556666666777777777777777777654433
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 007634 195 YNLGVV-YSELMQYDTALGCYEK 216 (595)
Q Consensus 195 ~~la~~-~~~~g~~~~A~~~~~~ 216 (595)
...-.+ .+-....++|++.|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 332222 3334455566665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-08 Score=87.84 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (595)
.++..+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 45669999999999999999999999999999986 5899999999999999999999999999987764 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
.+|.+...+|+.++|...|+++++..|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-10 Score=102.14 Aligned_cols=198 Identities=14% Similarity=0.037 Sum_probs=134.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
+-+.|+.|+++|+|++|+.+|.+.+..+|.|+..+.+.|.+|+++..+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhH-H-HHHHh-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLG-T-SLKLA-GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~-~-~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 207 (595)
+..+|.+.++.++++.|++.+....++.+-..+- . +-... | +-.|.+--.+++. ...-|..+...|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~--------~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILP--------IKKPGYKFSKKAMR 250 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhcc--------ccCcchhhhhhhcc
Confidence 9999999999999999997765444333211000 0 00000 1 1112222222221 11224455556666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
+.++.++-+-+.....+...-.+ +..+.+..+++.++.-..+++..+|..
T Consensus 251 ~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 66666665544443333222222 444455555555555555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-10 Score=82.26 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ .+.+|.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666777777777666663 344566667777777777777777766 556666666666667777777777777776
Q ss_pred HHHH
Q 007634 425 YEQC 428 (595)
Q Consensus 425 ~~~a 428 (595)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-09 Score=95.01 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPH----C-----------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (595)
...|..+++.|+|..|...|++++..-.. + ..++.+++.++.++++|.+|+..+.++|.++|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34456666666666666666665543111 0 12344555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 431 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 431 (595)
.+++..|.++..+|+++.|+..|++++++.|++..+...+..+..+..++.+. .+.|.+.+..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555555444444444333322 4444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-07 Score=79.30 Aligned_cols=257 Identities=16% Similarity=0.098 Sum_probs=181.8
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 245 (595)
-++..|+|.+++..-++.-... ........+.+.|..+|++..-+......- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 3455688888888776654443 667777888888999998876655444322 122345555666665556655555
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (595)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 325 (595)
.-+.+.+........ ......-+.++...+++++|+...... .+.++...-..++.++.+.+-|...+++
T Consensus 93 ~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444332222111 112333455666788999999888763 3456666777888899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 326 AFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 326 ~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+.+++.+. .+..||..+.. .+++.+|.-+|++.-+..|..+..+...+.|...+|++++|...++.++..++++
T Consensus 163 mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 98877553 34445554443 3478899999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCChhh
Q 007634 402 AEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRNA 438 (595)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~ 438 (595)
++++.++-.+-...|...++.+ ...+....+|+++-.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999998766554 455666677776643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-07 Score=97.81 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=190.2
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
-.+..+-|++.+..+|+....|...-....+.++.++|.+..++++.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888999999999999999999999999999999999874 3332 33455555555556777888899
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|++|.+..... .++..+..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|+
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99998775432 3566777788888999999999999999999899999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 328 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
+.-|. +.+.....|.+-++.|+.+.+...|+-.+..+|.-.+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99888 788899999999999999999999999999999999999999999999999999999999999874
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-07 Score=83.03 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=184.8
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCC
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~--------~~~~~~~la~~~~~~~~ 240 (595)
..+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|. ....|.++|.++++.|.
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence 333444444444444445566788888899999999999999988754 222222 22356899999999999
Q ss_pred HHHHHHHHHHHHh-c----------CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 241 LESAIACYERCLA-V----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 241 ~~~A~~~~~~al~-~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
|.-+..+|.++++ . .|...........++++.|..+...|++-.|.++|.++......++..|..++.+
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999995 1 1112222233346778889999999999999999999999999999999999998
Q ss_pred HHhcCC-------------------------------------------------HHHHHHHHHHHHhhC----------
Q 007634 310 YGEMLK-------------------------------------------------FDMAIVFYELAFHFN---------- 330 (595)
Q Consensus 310 ~~~~~~-------------------------------------------------~~~A~~~~~~~l~~~---------- 330 (595)
++...+ .+-|.-+++.++-+-
T Consensus 379 Cima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~ 458 (696)
T KOG2471|consen 379 CIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSIL 458 (696)
T ss_pred HHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhh
Confidence 854321 133455555544320
Q ss_pred -----------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 331 -----------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 331 -----------------------------------~-~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
| .. ..++.+.+.+-...|+.-.|+..-.+.++.
T Consensus 459 ~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~ 538 (696)
T KOG2471|consen 459 SVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL 538 (696)
T ss_pred hhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh
Confidence 0 00 124556677778899999999999998876
Q ss_pred CCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHH-----------------------hCCC----------c----
Q 007634 364 KPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y---- 401 (595)
Q Consensus 364 ~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~-----------------------~~p~----------~---- 401 (595)
|+...++..+|.+| ..+.+..+|...+.--+- ++|. .
T Consensus 539 -~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~A 617 (696)
T KOG2471|consen 539 -ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEA 617 (696)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHH
Confidence 55566666666555 456777777766654210 0110 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 402 -AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 402 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
...+++||.++.-+|++++|..++..+..+-|
T Consensus 618 r~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 618 RGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999999887
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=100.47 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=110.2
Q ss_pred HHcCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 007634 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (595)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (595)
....|.+..+| +..|..+...++ ...|+.+|+++++++|++..++..++.++.... +...+.....+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665544 556666665544 678999999999999999988888887775532 34566666677
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 142 ~l~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
++.+ +|..+.. +..+|......|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4544443 55556666778999999999999999999 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 007634 220 ERPMYAE 226 (595)
Q Consensus 220 ~~~~~~~ 226 (595)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=93.52 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDS----GN-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
...-..|..+++.|+|..|...|++++..-+ .+ ..++.+++.|+.++++|.+|+..+.++|..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3445678899999999999999999887422 11 24788999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhh
Q 007634 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKI 186 (595)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~ 186 (595)
+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+- .+... .+...+.|.+++..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~-------~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK-------QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988754443332 22222 33345666666655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=93.67 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 281 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 281 ~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
..+.|+.+|.+++ +.+|....++..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888888 88888888888888877654 12345566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 427 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 427 (595)
+++.|...|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666543322222222 2223344455555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=91.78 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=77.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 007634 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (595)
Q Consensus 334 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (595)
....+..|..+ ...|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555544 45677777777777777777776 4677778888888888888888888887776654 67777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 788888888888888888888888888776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.8e-07 Score=88.11 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH------------HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 007634 50 DALSYANILRSRNKFVDALALY------------EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~------------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
.|-.+|....+..+.+-|.-++ +++. .+|++ .-...|.....+|..++|+.+|++.-+.
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEE--DEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4556777777776666665443 3332 24433 3345566778899999999999987543
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------HhhC
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKID 187 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~ 187 (595)
-.+-.+|...|.+++|.+..+.-=.++ +-..|++.+..+...++.+.|+++|+++ +..+
T Consensus 830 --DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 830 --DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred --HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 346677888999999988766432222 2223777888888889999999998864 2223
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHH
Q 007634 188 PH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 188 ~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~~~~~~~~~~la~~~~ 236 (595)
|. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 32 456777889999999999999999988843 23345678899999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007634 237 NRGDLESAIACYERCLA 253 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~ 253 (595)
..|++.+|+..|.++-.
T Consensus 979 n~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-06 Score=75.70 Aligned_cols=290 Identities=16% Similarity=0.025 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILY 126 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 126 (595)
+-+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-...|+++.|.+-|+..+. +|.. .-.+..+-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 34556777777888889988888776543333 45666667788889999999999988764 3321 12233333334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh---CCCCH-----HHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI---DPHYA-----PAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~-----~~~~~la 198 (595)
...|..+.|..+-+++....|.-+.+. ...-......|+|+.|+++.+..... .++.. ..+...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 568999999999999999999877663 23333445679999999998876554 22211 1111122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
... -.-+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|... ++..|... +
T Consensus 238 ~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r 306 (531)
T COG3898 238 MSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----R 306 (531)
T ss_pred HHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----c
Confidence 222 234577888888888999999888888888999999999999999999988887643 22222221 1
Q ss_pred cCCHHHHHHHH---HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHH
Q 007634 279 EGDINQGVAYY---KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~ 354 (595)
.|+ .++.-+ ++...+.|++.+.....+...+..|++..|...-+.+....|. ..++..++.+-... |+-.++.
T Consensus 307 ~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 307 SGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHH
Confidence 222 222222 2223334444554444454444445444444444444444443 22333333333322 4444444
Q ss_pred HHHHHHH
Q 007634 355 ECYQMAL 361 (595)
Q Consensus 355 ~~~~~al 361 (595)
.++-+++
T Consensus 384 ~wlAqav 390 (531)
T COG3898 384 QWLAQAV 390 (531)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-09 Score=97.46 Aligned_cols=239 Identities=14% Similarity=0.055 Sum_probs=152.9
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
+...|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|+++..+..|......++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
...+|.+-++.++.+.|++.+....++. +. ...++. -+.+..|.. -+|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G~-----------------~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPGF-----------------TPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCCC-----------------Ccc
Confidence 9999999999999999997654433222 11 111110 011111111 111
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
.+-..+++.+ -.-|..+...|.++.++.++-+.+....++...-.+ +..+.+..++++|+...-+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 1111111110 112333444455555555555444443333322222 4445555555666655555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.........+.+-.-.|...++...++.++.+.|.+..+.
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 4433333444444444555566666666666666555443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-05 Score=71.32 Aligned_cols=348 Identities=12% Similarity=0.030 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
+.++..+|..+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356788888888888 8999999999999887764 456677776654 5789999999999998765444433333
Q ss_pred HHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 007634 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 226 (595)
.-.....++.++.... .+..+...+++++++....+ ...+.++.++.-..++..|++.+.-..+.... ...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 3444566777777666 88999999999999976654 45677899999999999998875432111100 011
Q ss_pred HHHHH--HHHHHHcCCHHHHH---HHHHHHHhcCCCcHHHHhhH------------------------------------
Q 007634 227 AYCNM--GVIYKNRGDLESAI---ACYERCLAVSPNFEIAKNNM------------------------------------ 265 (595)
Q Consensus 227 ~~~~l--a~~~~~~~~~~~A~---~~~~~al~~~~~~~~~~~~~------------------------------------ 265 (595)
..+.+ +.++....+..+.. ....+..+....++.-...+
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 11111 11111111211111 11111111111111000000
Q ss_pred ----------------------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 007634 266 ----------------------------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (595)
Q Consensus 266 ----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~--------~~~ 303 (595)
+.++...-..-...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 001111001111345566666666666543211 11 134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C--HHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~ 370 (595)
-.+..+-.-.|++.+|++....+.+. .|. .+.+.+.+|.....-+.++.|...|..+.+.-.. + +-+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45566667778888888877776654 333 2456667777777778888888888888876433 2 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
..++|.+|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 56788888887765544333332 34432 3467777888888899999999999988876
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-08 Score=76.69 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.5
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (595)
...+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+++..+++++|+..+++.++++|+++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4578899999999999999999999999999998864 57999999999999999999999999999999875 57
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 007634 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~~l~~~~~~~~~ 152 (595)
++..|.+++.+.. ..+|...|++.+...|++.-+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8999999988876 889999999999999987644
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-08 Score=92.48 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678899999999998888765 6667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+.|+...+++++..|++...|+.|+.+|..+|++++|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-06 Score=82.28 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=125.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHcCCC--------cH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------NA 116 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~ 116 (595)
...+........+++..+..-+..-.+.++....+.+.+++..+..++..|++.+|.+.+... +...|. .-
T Consensus 204 ~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 204 LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhh
Confidence 344555566677788888888888888888888889999999999999999999999987643 222232 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALS-A--------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~--------~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
..|.++|.++++.|.|.-+..+|.+++. . .| ...-....-..++++.|..+...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3568899999999999999999999995 1 11 11111222345689999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 007634 186 IDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 186 ~~~~~~~~~~~la~~~~~ 203 (595)
....+|..|..++.+++.
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998874
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-09 Score=73.44 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
++..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678888899999999888888888888889999999999999999998888888888777776664
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.8e-05 Score=70.74 Aligned_cols=397 Identities=12% Similarity=0.037 Sum_probs=247.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH-HH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH-TH 121 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~ 121 (595)
..+.+.+.|..+.+.+-.+ .+++....|++.+...|..+.+|.......+...+|+.-..+|.+++..--+ .+.| ..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 4567899999998888777 9999999999999999999999999999999999999999999999875433 3333 23
Q ss_pred HHHHHHHcCCHHHHHHHHHH----HHh---cCCCCHHHHHHHHHHHH---HhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 122 CGILYKDEGRLVEAAESYHK----ALS---ADPSYKPAAECLAIVLT---DLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~----~l~---~~~~~~~~~~~~a~~~~---~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
+..+-...|+...+....-+ ++. .++.....|......+. ..|.. ....+.+...+.|++++...-.+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~-ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKY-EENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccH-HHHHHHHHHHHHHHHHhcCccccH
Confidence 33444445554443333333 322 33444343333222111 12222 223366677778888876533332
Q ss_pred H-HHHHH-----------H--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHHHHHcC
Q 007634 192 P-AYYNL-----------G--VVYSELMQYDTALGCYEKAALE-------RPM-----------YAEAYCNMGVIYKNRG 239 (595)
Q Consensus 192 ~-~~~~l-----------a--~~~~~~g~~~~A~~~~~~al~~-------~~~-----------~~~~~~~la~~~~~~~ 239 (595)
+ .|... | .+-.....|-.|...+++.... +|. ..+.|.++...-...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 2 11111 1 1112234566666666665432 111 0123333322221111
Q ss_pred ------C--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-------HHHHHHHHHHHHhhCC-CCHHHH
Q 007634 240 ------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNW-HYADAM 303 (595)
Q Consensus 240 ------~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~-~~~~~~ 303 (595)
. ...-.-.+++++...+-.++.|+..+..+...++.+...|+ .+++..+|++++.... .+...+
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234467888888888888999888888888887776666 4566777777765432 233344
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-H
Q 007634 304 YNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-Y 378 (595)
Q Consensus 304 ~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~ 378 (595)
+.++..-...- +++.--..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-..-.++..-|.+ |
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44544433333 3666777788887764333 34555555666666677888888888876544333444433333 5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhhhhH
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNR 442 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 442 (595)
...++.+-|...|+-.+...++.+..-......+..+|+-..|...|++++.. .|+...-.+.+
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 56788888999999888888888888888888888888888899999888876 55544444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=79.96 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+.+-..|..++..|+|++|..-|..++...|... -.+.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3445568889999999999999999999988753 46778899999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
.+|.++..+++|+..|+++++.+|....+...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999997765443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=75.11 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.+.-++..|...++.|++++|+..|+.+...+|.. ..+...++..+++.+++++|+...++-+.+.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 56789999999999999999999999999998875 46889999999999999999999999999999988763
Q ss_pred HHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 007634 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (595)
Q Consensus 158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 229 (595)
.+++..|.++... .-..+|+..|+..+...|++.-+--.... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3355555544322 22345666667777777765322111111 0111111 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhh
Q 007634 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (595)
Q Consensus 230 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~ 274 (595)
.+|..|.+.|.+..|+.-++.+++..|+.. ++...+..++..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999987765 445555667777764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=72.98 Aligned_cols=99 Identities=24% Similarity=0.155 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC---CHHH
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPA 193 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~ 193 (595)
.+++.+|.++-..|+.++|+..|++++......... ..++..+|..+...|++++|+..+++.+...|+ +..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~----~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADR----RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 356666777777777777777777777655443321 334566666666667777777777777666666 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 194 YYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
...++.++...|++++|+..+-.++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777777777777777666553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=90.85 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.1
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.|+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+++++..|++...|..|+.+|...|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999877754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=73.40 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---cHHHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLG 409 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 409 (595)
+.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555443222 334455555555555555555555555555444 344444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 007634 410 VLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al 429 (595)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-05 Score=78.74 Aligned_cols=227 Identities=11% Similarity=0.001 Sum_probs=167.0
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++... +..+-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999998887776666665444 5666778888899
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHH---------
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK-NRGDLE--------- 242 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~--------- 242 (595)
+++|..+|++++..+|+ ......+-.+|.+.+.|.+-.+.--+..+..|..+-.+.....+.. .....+
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 8888888889999999888777777777788887654444433333 332222
Q ss_pred HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LY-YNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
-|....++.++.. +-.. .+.+...+ .+....+.+++|.+.+..- .+ ..+.+..........+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s-----~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIES-----EAEIILYL-LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccch-----HHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3445556665555 2111 11111111 2334478899999998433 33 3344455555667788888999999
Q ss_pred HHHHHHHHhhCCCC
Q 007634 320 IVFYELAFHFNPHC 333 (595)
Q Consensus 320 ~~~~~~~l~~~~~~ 333 (595)
.+...+++...+++
T Consensus 246 ~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 246 FELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=77.91 Aligned_cols=103 Identities=27% Similarity=0.316 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
.-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.++.+++.++.|+..+.++++++|.+..++...|.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 345556666677777777777777666542 356677777888888888888888888888887788888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
++..+++|++-|++.++.+|....++..
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 8888888888888888888877766544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.0002 Score=68.78 Aligned_cols=374 Identities=15% Similarity=0.054 Sum_probs=232.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 72 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 667889999999999999887766 9999999999999999999999999999999999999999999999875332 23
Q ss_pred HHHHHHHHHHHhHHHHHHhCChHHHHHHHHH----HH---hhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 007634 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYE----AL---KIDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~----~l---~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (595)
.|.. | +..+-...++...+....-+ ++ -.++.....|...+..+. ...+.+.-.+.|+
T Consensus 88 LW~l----Y--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWKL----Y--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHH----H--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 2221 1 12222333443333322222 22 235666666666555443 2335666778888
Q ss_pred HHHHhCCCCHH-HHH-------------HHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHH
Q 007634 216 KAALERPMYAE-AYC-------------NMGVIYKNRGDLESAIACYERCLAV-----------SPNFEIAKNNMAIALT 270 (595)
Q Consensus 216 ~al~~~~~~~~-~~~-------------~la~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~ 270 (595)
+++..--.+.+ .|. ..-.+-.....|..|...+++...+ .|.....-......+.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 88764332221 111 1111222344566666666665433 1111111111112221
Q ss_pred Hhhhhhh------hcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHh
Q 007634 271 DLGTKVK------LEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------FDMAIVFYELAFH 328 (595)
Q Consensus 271 ~l~~~~~------~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~l~ 328 (595)
++-.... ..|. -..-.-.+++++..-+-.+++|+..+..+...++ -+++..+|++++.
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 1111111 1111 1223345667777777778888776666666555 6788888888886
Q ss_pred hC-CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 329 FN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 329 ~~-~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
.- ..+...++.++..-...- +++.....+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-..-.
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 53 334445555554443333 3777778888888774433 345666666666777788899999999776444334
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 007634 404 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 404 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (595)
++..-|.+ |.-.++.+-|...|+-.+...++.+......+.-+.++.+.+
T Consensus 402 VfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 402 VFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 44433333 456899999999999999999999988777766666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=82.53 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (595)
.++.|.-++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5667777777788888888888888887765 5678888888888888888888888888876655 578888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+...+|+.++|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888887766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-06 Score=70.22 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
+++.......+.+...|. ..-.+.+|..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444444555555554 34567899999999999999999999986 4677889999999999999999999999999
Q ss_pred HHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 360 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 360 al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
..+.+|. .++....+|.++...|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999875 4778888999999999999999999999999987 78888889999999998888877666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=70.34 Aligned_cols=55 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3344444444444444444444444444444444444444444444444444333
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=91.90 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
+|+++..++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666666666666666666666666666666666543 666666666666666666666666665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-08 Score=69.23 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=51.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
..+++..++|++|+..+++++..+|+++..+..+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777766555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=68.18 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++.+|...++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555555555555555555555555555555555555555555555555555555555444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=68.07 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
+.+++|.++|.++ |..|....++..|-..|.++-+..-... .....+..|...+++|.+ .+..+
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhhc-cChHH
Confidence 4667777777665 3334444444555445544433221111 001113334444555444 47888
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Q 007634 176 GIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 176 A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~ 242 (595)
|+.++++++++..+. +..+..+|.+|..- .++++|+.+|+++-+.... ....+...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888887775543 23345788888765 8999999999999775433 2346677788888899999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 300 (595)
+|+..|++.....-++....+..-..++..|.++....+.-.+...+++..+.+|...
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 9999999998877777666555555566666666666666666666666666666643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=69.06 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNN 373 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~ 373 (595)
+..++.-|...+..|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3445555555555555555555555555544432 34455555555555555555555555555555442 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.|.+++.+.. ..+.... ..-...+...+|...|++.++..|++.-+.
T Consensus 90 ~gL~~~~~~~-----~~~~~~~--------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDE-----GSLQSFF--------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhh-----hHHhhhc--------------ccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 4444433322 0000000 000111226688888888888888876543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00056 Score=64.37 Aligned_cols=373 Identities=14% Similarity=0.045 Sum_probs=205.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
+...|-.+.+++++.+|..+|.++.+...+++ +.+.++-...+-+++.+.-...+-..-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578889999999999999999988655543 3444444455667777777777777777889888888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHhCChHHHHHHHHHHHhhC-C----CCHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKID-P----HYAP 192 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~~l~~~-~----~~~~ 192 (595)
.++.+.+.+|++.+....+.-...... .......+ ...+.++...|.+.++...+++.+..- + -+.+
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 999999999999988776542221111 11111111 235778889999999999999887652 2 2333
Q ss_pred HHH----HHHHHHHH----cCCHHHHHHHHHHHH-------Hh--------CCCC---------------------HHHH
Q 007634 193 AYY----NLGVVYSE----LMQYDTALGCYEKAA-------LE--------RPMY---------------------AEAY 228 (595)
Q Consensus 193 ~~~----~la~~~~~----~g~~~~A~~~~~~al-------~~--------~~~~---------------------~~~~ 228 (595)
.+. .+|..|+- ....+-+..+|+.++ .. .|.. ..++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 333 34444432 122222222332221 11 1110 0111
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 229 CNMGVIYK--------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 229 ~~la~~~~--------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
.+..+.|. -..+.+++....+..... +.......+...+..+-....++++...|..++.-...
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~--~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASS--KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11110000 011223333332222211 11112222222222222333456666777666666655
Q ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHhcCC-HHHHHHHHHHH
Q 007634 295 YNWHYAD-----------------------------------------------AMYNLGVAYGEMLK-FDMAIVFYELA 326 (595)
Q Consensus 295 ~~~~~~~-----------------------------------------------~~~~la~~~~~~~~-~~~A~~~~~~~ 326 (595)
.+|+... -+..-|.-+.+.|. -++|+..++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5554321 11222333344444 56667777766
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc---------cCC---CCHHHHHHH--HHHHHhcCCHHHHHHH
Q 007634 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS---------IKP---NFSQSLNNL--GVVYTVQGKMDAAAEM 390 (595)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~---------~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~ 390 (595)
++..+.+.+.-+..-.. -...|.+|+. .+-+.+. +.| .+.+.-+.+ |..++..|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66666654333221111 1112222221 1111111 111 123333334 3446788999999888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
-.=..++.| ++.++..+|.++....+|++|..++...
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 888888899 6999999999999999999999887654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-05 Score=66.69 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
....|...-.++.++..+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34556666667777777777776666554332 111 12334456667777777777666555
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
....-.+ +-.........+..++.+++-+ ..+.+.+..++.-.|+|.-.+..+.+.++.+
T Consensus 148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 4332111 1111111223355666666554 4567788889999999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 331 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----K--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 331 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
|..+.....+|.+..+.|+.+.|..+++..-+. + .....+..+.+.++.-.+++.+|...+.+++..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 667888899999999999999999999855432 2 233457778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+..+.|.|+.-.|+..+|++..+.+++..|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-06 Score=69.01 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhc
Q 007634 315 KFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (595)
Q Consensus 315 ~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (595)
+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555554443322 23344677777654 78888888888887664332 33566677777888
Q ss_pred CCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++|.+|+..|++.....-++. ..++.-|.|+.-..+.-.+...+++..+++|...+.+...++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 999999999999877654442 345667778888899999999999999999999888766543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00013 Score=63.24 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=161.4
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKID-------------PHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~-------------~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
.-.++.+...+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+......
T Consensus 75 r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~--- 151 (366)
T KOG2796|consen 75 RLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV--- 151 (366)
T ss_pred HHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH---
Confidence 3344455566666666555443332 211 223445577777888888877766655332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-CCCHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADA 302 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 302 (595)
...+-.........+..+..+++-+ ..+.+.+..+..-.+.|.-....+.+.++.+ |..+..
T Consensus 152 ----V~~ii~~~e~~~~~ESsv~lW~KRl-------------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 152 ----VSKILANLEQGLAEESSIRLWRKRL-------------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred ----HHHHHHHHHhccchhhHHHHHHHHH-------------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1112222233333355555555533 2333344444555778999999999999888 667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
...+|.+..+.|+.+.|..++++.-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 9999999999999999999999665432 2345677788889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLY 412 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 412 (595)
|+.-.|+..+|++.++.+++..|... ...++|..+|
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999743 3444454443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-06 Score=78.17 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (595)
|..+...|+...|+.++..|+...|... ....+||.++..-|...+|-..+.+++.++...+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3444567999999999999999988754 467899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 420 LAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999987766544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=66.03 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLY 412 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 412 (595)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 33456667777888888888888888888888888888888888888888888888888875433 35778888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 007634 413 RDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
..+|+.+.|..-|+.+.++-...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 88898888888888888876543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-06 Score=63.59 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc----HHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 123 (595)
...+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+..+|+.++|++.+++++++.... -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34566678888899999999999999999999999999999999999999999999999999986543 24678889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+|...|+-+.|...|+.+-++...
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999988877654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-05 Score=63.12 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
+.+....-..+.+...|.. .-.+.+|......|++.+|...|++++.- ...+... +..+++.....+++..
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~-------lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM-------LLGLAQAQFAIQEFAA 142 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH-------HHHHHHHHHhhccHHH
Confidence 4444444444444444432 23556677777777777777777776652 2233322 4555556666677777
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 176 GIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 176 A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
|...+++..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+.++|..-+....
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77777777776664 4566667777777777777777777777777765 5666666777777777766665554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-07 Score=84.15 Aligned_cols=72 Identities=29% Similarity=0.339 Sum_probs=50.2
Q ss_pred ccccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
++...+..+..++.+|..++..|+|++|+..|+++++.+|++.++ |+++|.+|..+|++++|+.+++++++.
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455667777777777777777777777777777777776643 777777777777777777777777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=68.66 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445566666666666666666666666654 11 12456667777777777777777777777654
|
... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=76.84 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+...+.+-..|..++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 007634 124 ILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
.+......+++|+..++++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00029 Score=69.93 Aligned_cols=262 Identities=15% Similarity=0.149 Sum_probs=155.3
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYE------ALKI----DPHY-APAYYNLGVVYSELMQYDTALGCYEKAALE----- 220 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~------~l~~----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 220 (595)
+.+|-..|.++.+..++++|+++|++ ++++ .|.. ...-...|.-+...|+++.|+..|-.+-..
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 45566778888889999999999875 3333 2332 222334577788888888888877654110
Q ss_pred --------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 221 --------------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 221 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
.......|-.++.-|...|+++-|.+.|.++-. ....-..|.+.|
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAG 805 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccc
Confidence 000112233445556666666666666554311 111112233456
Q ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhh-----------------CCCC-HH
Q 007634 281 DINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYE------LAFHF-----------------NPHC-AE 335 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~------~~l~~-----------------~~~~-~~ 335 (595)
++++|.++..+.. .|+ ....|...+.-+-..|+|.+|.++|- +++.+ .|+. .+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 6776666655543 233 23466777888889999999998873 33332 1221 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC------CC-----------------CHH--HHHH---------HHHHHHhc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIK------PN-----------------FSQ--SLNN---------LGVVYTVQ 381 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~-----------------~~~--~~~~---------la~~~~~~ 381 (595)
....+|.-+...|+...|...|-++-... .. +.. +.+. -..++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 66778888999999999999887764431 10 000 0000 01122233
Q ss_pred CCHHHHHHHH------HHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 382 GKMDAAAEMI------EKAIAA-----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 382 g~~~~A~~~~------~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
|-.+.|+... +-++.+ ....++++..++..+...|++++|-+.|-.+++++.-+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 4444443321 111111 22336788899999999999999999999999998755
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-07 Score=67.05 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
|+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44567889999999999999999999999997733333334445777888888888888888888888888764
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9e-05 Score=63.55 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 232 (595)
.+..-+.++....++++|..++.++.+-..++ +.++-..+.+......+.++..+++++ .
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA--------------s 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA--------------S 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------H
Confidence 34445555555666777666666665433222 122222333333333444444444433 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 007634 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNL 306 (595)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 306 (595)
..|.+.|..+-|-..++++-+.-. ..++++|+.+|++++...... .+.+...
T Consensus 99 ~lY~E~GspdtAAmaleKAak~le----------------------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALE----------------------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhh----------------------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 334455555555555555433221 235666666666666543322 2334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
+.++.+..++++|-..+.+-... .++....+.....++....+|..|..+++...++
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 56666666666665555443322 1222233333334444445666666666555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00049 Score=68.87 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 007634 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 314 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~ 389 (595)
...+.|.+.+....+..|+..-.++..|.++...|+.++|++.|++++.....- .-.++.+++++..+.+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555566666666666666666666666666666666666666655332221 2356667777777777777777
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 007634 390 MIEKAIAANPTY-AEAYNNLGVLYRDAGSI-------SLAIDAYEQCLKIDP 433 (595)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p 433 (595)
++.+..+.+.-+ .-..+..|.++...|+. ++|.++|.++-.+..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 777777654432 23445566677777777 777777777765543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=70.18 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (595)
++.|.+.++.....+|.+++.+++-|.++..+.++ .++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 45666666666666777777777666666554322 11111 1234444455
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+++.++|+..++++.+|.+|..++ .+++|..+|++|...+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555555555555555555555443 26789999999999999988766554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6e-05 Score=64.58 Aligned_cols=200 Identities=22% Similarity=0.191 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 307 (595)
+..-+..|...+++++|...+.++.+-..++. .++.-+..+-..+........+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33344555555666666666666654443332 222333444444444444455556666655553
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhc
Q 007634 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (595)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (595)
..|...|..+.|-..++++-+. ....++++|+++|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 2344445544444444444322 22335556666666655542221 23445556667777
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhhhhHHHHhhhccC
Q 007634 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (595)
Q Consensus 382 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~ 451 (595)
.++++|-..+.+-... .++....+.....+|.-..++..|..+|+...++ .|++..+..++ +..+..
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL---L~ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL---LTAYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH---HHHhcc
Confidence 7777766665554322 2333344555555556666777777777776654 34444444443 344566
Q ss_pred CCcHHHHHH
Q 007634 452 GHDDKLFEA 460 (595)
Q Consensus 452 ~~~~~~~~~ 460 (595)
|+.++..+.
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0028 Score=62.33 Aligned_cols=345 Identities=9% Similarity=-0.061 Sum_probs=223.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY-KDEGRLVEAAESYHK 141 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 141 (595)
..+.+...|...+...|.-...|...|..-.+.|..+.+.+.|++++.--|-....|..+-... ...|+...-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3466777888888899999999999999999999999999999999999998877776654433 346777777888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 007634 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (595)
Q Consensus 142 ~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~ 215 (595)
|......+... ...|-..-.....++++..-...|++.++........++..=.-+... -..+++...-.
T Consensus 140 A~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 88776553322 112333333446678888888888888875433322222211111111 11222222111
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 216 KAALERPMYAEAYCNMGVIYKNRGDLES-AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
..... ...-..+...+ -.......-...+........+.......-.++.......+....++..+.
T Consensus 216 ~~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 216 DVAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hHHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11100 00000001111 111111111111111111111222222222223333344555555555554
Q ss_pred h-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C
Q 007634 295 Y-----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P 365 (595)
Q Consensus 295 ~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~ 365 (595)
. .|. ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+.. |
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 3 222 245677777888899999999999999998888889999999999999999999999998888874 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
..+.+...-+..-...|++..|...+++..+..|+..++-..........|+.+.+..
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 6677888888888889999999999999999889998888888888999999998884
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.001 Score=66.67 Aligned_cols=150 Identities=18% Similarity=0.066 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHccCCCCHHHHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEA------CNNLGVIYK----DRDNLDKAVECYQMALSIKPNFSQSLN 372 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~ 372 (595)
..+-.+.--.|+-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.+.++...+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444445577777777777776522111 111 111111111 245788999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhh
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 448 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 448 (595)
..|.++...|+.++|++.|++++...... .-.++.++.++..+++|++|..+|.+..+.+.- ..+.+.++.+.++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 99999999999999999999988543332 246788999999999999999999999996655 5677777788888
Q ss_pred ccCCCc
Q 007634 449 INEGHD 454 (595)
Q Consensus 449 ~~~~~~ 454 (595)
...++.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 877766
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0039 Score=62.35 Aligned_cols=48 Identities=19% Similarity=0.028 Sum_probs=37.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (595)
....|+|+.|..+++. ++..|+....|..++...+..|+.--|..+|.
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3678999999987765 57778888888888888888887766666654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.6e-06 Score=66.76 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH---HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--- 206 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--- 206 (595)
+.|.+.++.....+|.+.+....-+.++..++.... ...-+++|+.-|++++.++|+...+++.+|.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444444433433433333211 12346788889999999999999999999999987653
Q ss_pred --------HHHHHHHHHHHHHhCCCCHH
Q 007634 207 --------YDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 207 --------~~~A~~~~~~al~~~~~~~~ 226 (595)
|++|..+|+++...+|++..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 55666666666666666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0025 Score=59.31 Aligned_cols=131 Identities=21% Similarity=0.089 Sum_probs=105.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhh----CCC----------
Q 007634 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH---------- 189 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~----~~~---------- 189 (595)
....|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999997766 6667777889999999999999999 999999999999887 211
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1356778889998887755 456666666677788888887777777778999999999999887654
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=68.21 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=119.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (595)
.......+..+...-++.-+++++.+|+.+.++..+|.-. .....+|.++|+++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 3445557788888888888888888888888888877532 2346778888888776533211 111111111111
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHH
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A 210 (595)
- ......+.+. +..+-..++.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++
T Consensus 247 ~-------e~~~~Rdt~~-----~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 247 W-------EAWHRRDTNV-----LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred h-------hhhhccccch-----hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 1 1111111111 1223566888888999999999999999987765 466888999999999999999
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhcCCCcHH
Q 007634 211 LGCYEKAALE-RPMYAEAYCNMGVIYKNR-GD---------------LESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 211 ~~~~~~al~~-~~~~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~~~~~~ 260 (595)
...+.+.-++ -|..+...+..+.+..+. ++ -..|.+.+.++++.+|.-+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9888886433 245555555555443321 11 12356677777777776553
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0017 Score=63.44 Aligned_cols=296 Identities=15% Similarity=0.069 Sum_probs=150.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGI 124 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~ 124 (595)
.+++....|+|+. +.+.+...+ +..+..+..+......++++++....+++...-- ......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566778888888 333333322 2346667777777788999988888887765421 11111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--HHHHHHHHHHhh----CCCCHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALKI----DPHYAPAYYNLG 198 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--~A~~~~~~~l~~----~~~~~~~~~~la 198 (595)
.+......+++..+....... ......+...|...-.. ...+++ +-+-.++..+-. .......+...+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 111222333333333211110 11111111112111100 011111 111111222211 344567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (595)
.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.............. ....+.
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~--~~~~~~ 231 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA--ELKSGL 231 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH--HHhhcc
Confidence 999999999999999999887652 25778888999999999999999999888872111100000000 000000
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
.+.............. ......++..+|...... +..++++..|.++++.+|....+|..+|..+...-
T Consensus 232 ~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 232 LESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred ccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0000000000000000 000133445555555555 56666666666666666666666666665554321
Q ss_pred -----------------CHHHHHHHHHHHHccCCC
Q 007634 349 -----------------NLDKAVECYQMALSIKPN 366 (595)
Q Consensus 349 -----------------~~~~A~~~~~~al~~~~~ 366 (595)
-...|+..|-+++...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124588888899888777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0043 Score=64.36 Aligned_cols=320 Identities=11% Similarity=0.087 Sum_probs=173.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.+++..--....++..+-..+-++++++++-.+.. +......+-... -.-+.....++.++.-..+.. .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCch------hH
Confidence 34555555556677777777888888887643321 222222222221 123344455555554322221 24
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
|.+....+-|++|...|++- .-+..+... .....+..+.|.++.+++ +.+.+|..+|.+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~V----------Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQV----------LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHH----------HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH
Confidence 56666777788888888764 112222111 112235666666666554 34778888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH------------
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------ 270 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 270 (595)
+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+...... .-..+..+|.
T Consensus 1116 ~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHHHhchHHHHHHHh
Confidence 888888888888765 6677788888888888888888888877765533211 1111111221
Q ss_pred ---------HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 271 ---------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (595)
Q Consensus 271 ---------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 341 (595)
..|+-....+.|+.|.-+|.. ..-|..++..+..+|+|..|...-+++- +...|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHH
Confidence 223333344445544444432 2345556666666666666666665552 233444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
..+...+.+.-|.-+=-..+ -+++-+-.+...|...|-+++-+..++.++-+...+...+..||.+|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 44433333333221110000 1133344555566666777777777666666655555555666655544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=66.05 Aligned_cols=150 Identities=13% Similarity=-0.038 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~~la~~~~~~~~~~~A~ 354 (595)
.|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++++.. +++. ..+.-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 455556666666666666666555555555666666666666666666554 4443 333444555556666666666
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+.-++++++++.+..+...++.++...|++.++.++..+.-..-... ..-|...+.++...+.++.|++.|.+-
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 66666666666666666666666666666666666655432221110 123444555666666666666666543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-06 Score=71.67 Aligned_cols=89 Identities=22% Similarity=0.225 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 386 (595)
|..++...+|+.|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|........+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34444444445555555555555554444444555555555555555555555555555444444555555444445555
Q ss_pred HHHHHHHHH
Q 007634 387 AAEMIEKAI 395 (595)
Q Consensus 387 A~~~~~~al 395 (595)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-05 Score=71.42 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666666778888888888876666667888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.|+.+.|...|++++..-|... .+|......-...|+.+...+..+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888887766544 5777788888888888888888888888888754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=65.67 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=97.1
Q ss_pred ccCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHhCCHHHHHH
Q 007634 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFD 103 (595)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~ 103 (595)
..+......+-..|+.++..|+|.+|...|+.++. ..|..+ ..+.+++.|++..|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 33445667788899999999999999999998875 245443 467889999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
....++..+|.+..+++..|..+...-+.++|...|.++++++|.-...
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999999975443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.001 Score=62.87 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCcHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~ 261 (595)
.++...++-..|....+|+.-+++.+.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999999987666 45567788889999998 9999999999999 45556667777
Q ss_pred HhhHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+...+.+|..+-.. .......++|+..|.++.+..|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 77777777765432 12233477778888888777753 3334455555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.015 Score=60.92 Aligned_cols=317 Identities=13% Similarity=0.031 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCC--cH----HHHHHHHHHHHHcCCHH
Q 007634 65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQ--NA----CAHTHCGILYKDEGRLV 133 (595)
Q Consensus 65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 133 (595)
..|+.+++-+++..+- .+.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777777743222 3457888999987 788999999999999887643 22 34566788888888877
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 007634 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~----~~~la~~~~~~g~ 206 (595)
|...+++.++........ +...-. +.. .......+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFR-LLK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHH-HHH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999998865552221 111111 111 122222379999999999988775 344333 3334666677788
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 007634 207 YDTALGCYEKAALERP----------MYAEAYCNMGV--IYKNRGDLESAIACYERC---LAVSPNFE------------ 259 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~~~~~~A~~~~~~a---l~~~~~~~------------ 259 (595)
.+++++.++++..... ....++..+-. ++...|++..+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744221 12334444433 345667766666555443 22111110
Q ss_pred --------------------HHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC----------C----------
Q 007634 260 --------------------IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----------Y---------- 299 (595)
Q Consensus 260 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~---------- 299 (595)
......+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 001112333444444555556665777777766643110 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 007634 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (595)
Q Consensus 300 ------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~------ 358 (595)
....+..+.+.+-.+++..|....+.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 1134456666777888888888777766542 22 36677788888888888888888887
Q ss_pred --HHHccCCCC---HHHHHHHHHHHHhcCCH
Q 007634 359 --MALSIKPNF---SQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 359 --~al~~~~~~---~~~~~~la~~~~~~g~~ 384 (595)
.+....+.. .-+..++..++...+..
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 333333332 22445566666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0036 Score=64.39 Aligned_cols=177 Identities=23% Similarity=0.236 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcC--
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG-- 130 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (595)
+..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 5788888999998765 5889999999999771 1125667888999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 007634 131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE- 203 (595)
Q Consensus 131 ---~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 203 (595)
++..|..+|.++-..... .+ .+.+|.++.... +...|.++|..+... .+..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~--~a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP--DA-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc--hH-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 678899999999887544 33 344555554433 678999999888764 467888888888865
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 007634 204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (595)
Q Consensus 204 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 254 (595)
..+...|..++.++.+.. .+.+...++.++... +.++.+...+......
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357889999999998887 455555555555433 6777666665555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0036 Score=61.13 Aligned_cols=261 Identities=11% Similarity=0.087 Sum_probs=147.9
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 007634 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYK 236 (595)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~ 236 (595)
.+....|+|+.-.+..... ..+.....+..+......++++++..+++++...- +......+..-.-+.
T Consensus 6 eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3445668888733332222 12234566666666778899999999888876531 111111111112222
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhh----CCCCHHHHHHHHHHH
Q 007634 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYY----NWHYADAMYNLGVAY 310 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~----~~~~~~~~~~la~~~ 310 (595)
...+.+++..+....... ......+...+...- -....+++ +-+-.++..+-. .......+...+.+.
T Consensus 83 ~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 333444444443221110 111111111111100 00011111 111111222211 334567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-C-C------------------
Q 007634 311 GEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P-N------------------ 366 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~-~------------------ 366 (595)
.+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..+... . .
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 999999999999998887642 246788888999999999999999888877711 0 0
Q ss_pred --------------CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 007634 367 --------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS--------- 417 (595)
Q Consensus 367 --------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------- 417 (595)
...++..+|...... +..+++...|.++++.+|+...+|+.+|..+...=+
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~ 316 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEES 316 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 123555566666666 778888888888888888888888888877654321
Q ss_pred --------HHHHHHHHHHHHhcCCC
Q 007634 418 --------ISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 418 --------~~~A~~~~~~al~~~p~ 434 (595)
...|+..|-+++...++
T Consensus 317 ~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 317 SQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred chhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13366666666666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.8e-06 Score=51.66 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=68.11 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
.|+...+...+.+..+.|..+|.++.+..+....+|...|...+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356666777777778888888888886666677888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
.|+.+.|..+|++++..-+..... ..+|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888876654311 223455555555667777777777776666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00059 Score=66.16 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=94.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.|..+...|+...|+.++..++...|... ....++|.++.+.|-...|-..+.+++.+....+..++.+|..+..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 45555678999999999999999888653 45778999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
+.|++.|+++++++|+++.+...|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999988776665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00046 Score=62.20 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~a~~~~ 161 (595)
+-....+.+....|++.+|...+++.++..|.+.-++..--..++.+|+...-...+++++.. +++.+-.. .+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s----Yv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS----YVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH----HHHH
Confidence 444555667778899999999999999999999999888889999999999999999999877 66654332 2233
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~ 237 (595)
.++-.+...|-+++|.+..++++++++.+..+...++.++...|++.++.+...+.-..-... ..-|...+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 455667788999999999999999999999999999999999999999999988754332211 2235566888889
Q ss_pred cCCHHHHHHHHHHHH
Q 007634 238 RGDLESAIACYERCL 252 (595)
Q Consensus 238 ~~~~~~A~~~~~~al 252 (595)
.+.++.|+++|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998754
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.4e-06 Score=51.24 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444555555555555555555555555555555544444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.1e-05 Score=64.13 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
...+.+++.|+...|+|-++++.....+..+|.+..+++..|.+....=+.++|...|.++++++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 45678888999999999999999999999999999999999999988889999999999999999876555433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.023 Score=59.67 Aligned_cols=409 Identities=15% Similarity=0.064 Sum_probs=243.8
Q ss_pred CchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---c
Q 007634 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (595)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (595)
.++...+++|.+++ ...++++|...+++++..... .. .+.+.++.++.+.+... |...+++.++...+ .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 56778899999988 779999999999999876533 22 34556788888887777 99999999887554 1
Q ss_pred -HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---
Q 007634 116 -ACAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (595)
Q Consensus 116 -~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 187 (595)
....+.+ ...+...+++..|++.++....... .++.. ...+....+.+....+..+++++.++++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2222222 2333334799999999999988763 33332 22234445566677788888888888774431
Q ss_pred ---CC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 007634 188 ---PH----YAPAYYNLGV--VYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (595)
Q Consensus 188 ---~~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~~---~---~---------------------- 224 (595)
+. ...++..+-. ++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 2334444433 455677777776665544 221 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-------------------HHHhhHHHHHHHhhhhhh
Q 007634 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-------------------IAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 225 --------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~~l~~~~~ 277 (595)
.-++..-|......+..++|.++++++++.-.+.. ........++...+....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233345566667777788888888775422111 111222344555666677
Q ss_pred hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 007634 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~~l~~~~~~---~~~~ 337 (595)
..+++..|....+.+.... |. .+..++..|..+...|+.+.|+..|. .+....+.. .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 8899999998888777553 22 36688999999999999999999998 333333332 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHHHHHHHHH-----HH--hcCCHHHHHHHHHHHHHhC-C--Cc--
Q 007634 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGVV-----YT--VQGKMDAAAEMIEKAIAAN-P--TY-- 401 (595)
Q Consensus 338 ~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~-----~~--~~g~~~~A~~~~~~al~~~-p--~~-- 401 (595)
.++..++...+.-.. +...++..-....+.+...+..+.. +. ..-...++...+..+++.. . ++
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566666665554333 3344433222211122222222221 11 2223457777777777654 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhhhhH----HHHhhhccCCCcHHHHH
Q 007634 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE 459 (595)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~ 459 (595)
.-++..++..+. .|+..+.......+....... ....+.. ++...+-..|+.+++-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234555666666 788888887777777665544 4333321 22233555666665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0065 Score=62.52 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLA 421 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A 421 (595)
+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.++..- .....|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44555555555543 35567777777777654 35888888888887766 78888888887751 126788
Q ss_pred HHHHHHHHhcCCCC
Q 007634 422 IDAYEQCLKIDPDS 435 (595)
Q Consensus 422 ~~~~~~al~~~p~~ 435 (595)
..+|.++.+.+...
T Consensus 529 ~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 529 KRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHhcCchh
Confidence 88888887766553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.023 Score=58.72 Aligned_cols=298 Identities=16% Similarity=0.076 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-----C
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----Y 190 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-----~ 190 (595)
.+.+..-+..+...|...+|+...-.+- ++.. .+.++.+.+.-+...++..- +...++.-|. +
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~---aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEM---AADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHH---HHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 5677777778888888888887655441 1111 23334444444444444432 2333333332 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
+......+.......++++|..++.++...-+. .....-..|.+....|++++|+++.+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 566677788888899999999999888665433 234556678888999999999999999999887754
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHh----h
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y--ADAMYNLGVAYGEMLK--FDMAIVFYELAFH----F 329 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~~~~la~~~~~~~~--~~~A~~~~~~~l~----~ 329 (595)
+.....++..+|......|++++|..+...+.+.... . ..+....+.++..+|+ +.+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3344566777888888899999999999888776322 2 2244556778888884 3333333333222 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF--S-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY- 401 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 401 (595)
.|.........+.++...-+++.+.....+.++. .|.. . ..++.++.+++..|++++|...+.....+-.+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 3443334444444444333466666666665554 2222 2 233589999999999999999998887653222
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 402 A------EAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 402 ~------~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+ .++.-.......+|+.++|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 1222223334567888888888777
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.019 Score=59.82 Aligned_cols=239 Identities=16% Similarity=0.072 Sum_probs=128.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.|-++|...++.|...+|++.|-++ +++..+........+.|.|++-+.++.-+-+... .+..-..+...|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 4455566666666666666666665543 3445555555556666666666666555544321 112222233334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
.+.++..+-.+.. ..|+... ....|.-++..+.|+.|.-+|.. ..-|..++..+..+|+
T Consensus 1177 Akt~rl~elE~fi-----~gpN~A~--------i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN--------IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHhchHHHHHHHh-----cCCCchh--------HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH
Confidence 4444443333222 2343322 34456666666777777666643 3345667777777777
Q ss_pred HHHHHHHHHHHHHhC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 207 YDTALGCYEKAALER---------------------P----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 207 ~~~A~~~~~~al~~~---------------------~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+...+...
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 777777666652210 0 023445566677888888888888888888776655555
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
...++..|... ++++-.+.++-....- -+....|..+..+|.+-..|+.|.
T Consensus 1316 fTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1316 FTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 55555544432 3444444333222110 112345666666666666666553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=76.48 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
++.+-..|..++..+.|+.|+.+|.++++++|+++..+-..+.++.+.+++..|+.-+.++++.+|....+++..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
..+.+.+|...|++...+.|+.+.+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999999887443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00088 Score=64.19 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLY 412 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 412 (595)
+...+|.+..+.|+.++|++.++..++..|. +..+..+|..++..++.|.++...+.+.-++ -|+.+...+.-+.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345566666666666666666666655543 2445666666666666666666666654322 234444444443332
Q ss_pred HH-------------cC---CHHHHHHHHHHHHhcCCCChhhh
Q 007634 413 RD-------------AG---SISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 413 ~~-------------~g---~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+ .| --..|.+...+|++.||.-+...
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 21 11 12357899999999999887654
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.1e-06 Score=47.85 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=20.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.2e-05 Score=66.84 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
.++.+-..|+.+++.++|..|+..|.+.|+..-. ++..|.+.|-|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5677788999999999999999999999997443 456889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.015 Score=54.13 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=86.5
Q ss_pred HhCCHHHHHHHHHHHHHcC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 007634 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (595)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~-------~~~~~~~~~~~a 157 (595)
..|+.+.|..++.++-... |+. ...++..|......+ ++++|..+++++.+. ....++......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4555555655555554432 211 234555666666666 777777777777665 233445555667
Q ss_pred HHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+....++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 77888899988877654 455566666666788888886666777778999999999999988754
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00073 Score=60.36 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 181 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
++.+..+|++..+.+.++..+...|+.++|++.+-..++.+.. +..+...+-.++...|.-+.+...+++
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4445567777888888888888888888888877777766443 455666666666666644444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2e-05 Score=46.33 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0035 Score=56.21 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
..+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3444455555555555555555555555555555555555555555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0062 Score=57.73 Aligned_cols=178 Identities=12% Similarity=0.009 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHK-ALSADPSYKPA 152 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~~~~~~~ 152 (595)
+++....+-.+|....+|+.-++..+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999988887666 45567788889999998 9999999999999 45556677787
Q ss_pred HHHHHHHHHHhHHHH--HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 007634 153 AECLAIVLTDLGTSL--KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (595)
....+.++..+-... ......++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 777777776654331 22345899999999999999754 334556666666665433332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 221 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.-.+...+..++.+..-.|++++|.+.++++++..|..-
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123455666778888889999999999999999987643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1e-05 Score=47.17 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=17.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (595)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=75.51 Aligned_cols=131 Identities=16% Similarity=0.234 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
.-.-+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++.+|...|++...+.|+++.+...+..|-.. -...-|++++-..++++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~~~~~d~~s 137 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAILTPEGDKKS 137 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhcccCCccCCcc
Confidence 88888888888888888888777766665433 2344556666555544433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=45.40 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
++++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0074 Score=52.82 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 007634 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (595)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (595)
.+|.++..+|+.++..+..+ ..|+..-..++.++|.+-..+...-.++..++ .+..+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~ 96 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNK 96 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHH
Confidence 34555666665555544433 44556666777778877776655544444443 45677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 176 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
-++++.+.++.+|.+..+|...-.+....|++. .-++..+.++..+..+..+|...-.+....+.++.-+.+..+.++.
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888877 7788888888888888888888888888888888888888888877
Q ss_pred CCCcHHHHhhHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 007634 255 SPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (595)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 312 (595)
+-.+..+|...-.+... .| .......+.-+.+..+.+...|++..+|..|.-++..
T Consensus 177 Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 177 DIRNNSAWNQRYFVITNTKG--VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhhccchhheeeEEEEeccC--CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 76655555432211111 00 0001123445566667777778877777777766664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.051 Score=62.30 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 400 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~---------- 400 (595)
...+.|...|++....|+++.|..++-.|.+.. -+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347788888888888888888888887777765 56777888888888888888888888888652 22
Q ss_pred c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhhhh
Q 007634 401 Y------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 401 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
. ..+...++......|++ ..-+++|..+.++.|...+.+..
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 1 12344445555555553 34567777888888855544433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.03 Score=64.05 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007634 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (595)
..+-+-.+++++-....++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 44444445554433222223445667777777777777888888877777776655 4667777888888888888888
Q ss_pred HHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCCCCHHHHHHHH
Q 007634 321 VFYELAFHFN-PH----------C------AEACNNLGVIYKDRDNL--DKAVECYQMALSIKPNFSQSLNNLG 375 (595)
Q Consensus 321 ~~~~~~l~~~-~~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la 375 (595)
..+++.++.+ |+ . ..+...++......+++ ..-+++|..+.+..|.....++.+|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 8888887552 22 0 11223333333344432 3345667777777776666666565
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0095 Score=52.17 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=148.8
Q ss_pred chHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRS-RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+-+..+...++.+. ...-..|+++-..++..+|.+..+|...-.++..++ +..+-++++.++++.+|++..+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 44555555554444 456679999999999999999999888877776654 6788899999999999999999999999
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 125 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
+....|+.. .-+++.+.++..+.++-.++ ...-.+...-+.++.-+.+..+.++.+-.+-.+|...--+...
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaW-------shRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAW-------SHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhh-------HHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 999999888 88999999999888887764 4444455556789999999999999877766666543222222
Q ss_pred -cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 007634 204 -LM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG--DLESAIACYERCL 252 (595)
Q Consensus 204 -~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~--~~~~A~~~~~~al 252 (595)
.| ..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-........
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 11 23455677888899999999999999888875 44 2334444444443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.1 Score=56.32 Aligned_cols=114 Identities=19% Similarity=0.148 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHcCCCcHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (595)
+..-.+++..+.|+.|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++. .-.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 344567888999999999999999998865 46888888887654 2 466777777764 345677778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
.|.+|.++|++++-++++.-+++..|+.+......-.+.+.+-.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887655444444444333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.5e-05 Score=68.86 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
.-..|...+..|++++|++.|..+++++|.....+...+.+++.+++...|+..+..+++++|+...-+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 33467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 007634 131 RLVEAAESYHKALSADPS 148 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~ 148 (595)
++++|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999887654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0037 Score=52.27 Aligned_cols=118 Identities=24% Similarity=0.137 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 318 ~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
+.....++....++... .+...++..+...|++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444455555554442 344677888999999999999999998764433 346678999999999999999988
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.......= .+..-...|.++...|+.++|+..|+++++..++..
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 76532210 133456789999999999999999999999985543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00055 Score=61.71 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=91.9
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 231 (595)
.|.-+..-|+-++...+|..|...|.+.++..-. +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4556888899999999999999999999988443 467789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 232 GVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
+.++..+.++.+|..+++..+.++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.8e-05 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.058 Score=51.42 Aligned_cols=339 Identities=12% Similarity=-0.008 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--------------
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-------------- 115 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------- 115 (595)
.+..+-...+-.++.+.-...+-..-+..|..+...+..|...++.+.+.+|++.+......-.+.
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 333344444556667776666666667788888899999999999999999999988776542111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHH-----
Q 007634 116 -ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKY----- 180 (595)
Q Consensus 116 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~----- 180 (595)
...-...+.++...|++.++...+++.+..--. +.+.+.... ..+|..|.. ....+-+..+|
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v---lmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV---LMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH---HHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 112244678899999999999999988764221 222222111 112222211 01111111111
Q ss_pred --HHHHh------------------------hCCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHHH
Q 007634 181 --YEALK------------------------IDPHY-----APAYYNLGVVYS--------------ELMQYDTALGCYE 215 (595)
Q Consensus 181 --~~~l~------------------------~~~~~-----~~~~~~la~~~~--------------~~g~~~~A~~~~~ 215 (595)
.++-. .-|.. ..++.+..+.|. -..+.+++....+
T Consensus 204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce 283 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCE 283 (549)
T ss_pred HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHH
Confidence 11100 01110 011111111000 0012222222222
Q ss_pred HHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-----------------------------
Q 007634 216 KAALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA----------------------------- 261 (595)
Q Consensus 216 ~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------- 261 (595)
..... ...-....-.+-....+.++...|..++.-...++|+....
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 21111 00111122222233345677777777777666666654211
Q ss_pred -----------HhhHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Q 007634 262 -----------KNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAF 327 (595)
Q Consensus 262 -----------~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~l 327 (595)
...++..+...+.-+-..|. -++|+..++.+++..+.+.+.....- .+-...|.+|+. .+.+.+
T Consensus 364 lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHH
Confidence 11112222223333444454 78889999988888887764332211 111112233221 222222
Q ss_pred hh---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 328 HF---------NP---HCAEACNNL--GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (595)
Q Consensus 328 ~~---------~~---~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (595)
.+ .| .+.+.-+.+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 21 12 234444444 4456789999999998888889999 899999999999999999999999876
Q ss_pred H
Q 007634 394 A 394 (595)
Q Consensus 394 a 394 (595)
.
T Consensus 521 L 521 (549)
T PF07079_consen 521 L 521 (549)
T ss_pred C
Confidence 4
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.11 Score=54.03 Aligned_cols=304 Identities=15% Similarity=0.035 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+.+..-+..+...|...+|+...-.+ .+|.-. ......+.-....++.. .+...++.-|... ........
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~--l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAEL--LASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHH--HhhCchHH
Confidence 566777777778888888888776543 222211 12222333344444432 2233333333211 11112223
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 226 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~ 226 (595)
...+.......++.+|..++.++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 44556667788999999888887665332 13455567888889999999999999999887753 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHH----HhhCCCCH
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKA----LYYNWHYA 300 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~----~~~~~~~~ 300 (595)
+...+|.+..-.|++++|..+...+.+...... .+.....+....+.+...+|+.. +....+... +...|-..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 678889999999999999999999887754433 22233344455566666677332 222222222 12233333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----H
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--AE-ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----S 368 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~--~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~ 368 (595)
-.....+.++...-+++.+.....+.++. .|.. .. .++.++.+....|++++|...+.+...+-.+. .
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333333333333366666666666554 2322 22 23488999999999999999988877653222 1
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 369 Q--SLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 369 ~--~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
. +..-.......+|+.++|.....+.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 1122223345678999998888774
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=42.60 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.064 Score=51.01 Aligned_cols=380 Identities=11% Similarity=-0.005 Sum_probs=196.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..+.++-.++.+.+.+-.+|.+++-.+.|++...-.|--+.+|...-..-+..+++..-..+|.+++...-+ .+.|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence 345677889999999999999999999999998888877777777666666678888888888888865433 3333322
Q ss_pred HHHHHHcC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 123 GILYKDEG---------RLVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 123 a~~~~~~g---------~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~---l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
-..-.+.+ ..-+|.+..-.+.-..|.....|......+.. ++. ...+.+.+.-...|.+++...-++
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcCcccc
Confidence 22111111 12334444334444566665554443332211 111 113334455555566665542222
Q ss_pred HH-HHHHH---------HHHHHHcC----CHHHHHHH-------------------------------------------
Q 007634 191 AP-AYYNL---------GVVYSELM----QYDTALGC------------------------------------------- 213 (595)
Q Consensus 191 ~~-~~~~l---------a~~~~~~g----~~~~A~~~------------------------------------------- 213 (595)
.+ .|... +..-.-.| -|-.|...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 11 11000 00000000 01222222
Q ss_pred ----------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 214 ----------------YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 214 ----------------~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
+++++...+-.++.|+.....+...++-+.|+...++++...|. ....+ +..+.
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~l-------se~ye 344 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFL-------SEYYE 344 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeH-------HHHHh
Confidence 23333334444566666666677778888888888888777776 22222 23333
Q ss_pred hcCCHHHHHHHHHHHHhh------------------CCC-CHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYY------------------NWH-YAD-----------AMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~------------------~~~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
...+-+....+|+++.+. +++ ..+ ++..+-..-.+..-.+.|...|.++-
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 334444444444433321 010 011 11112222223333455555555554
Q ss_pred hhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHH
Q 007634 328 HFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEA 404 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 404 (595)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 4432222333222222 3445667777777777777777666666666666666677777777777665542222 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
|..+-..-..-|+...+...-++..++.|.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 444444444555555555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.07 Score=50.74 Aligned_cols=359 Identities=9% Similarity=-0.055 Sum_probs=191.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
-++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|--+.+|...-.--+..+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 4455678899999999999999999999999999999999988888777776665556677888888889888875433
Q ss_pred HHHHHHHHHHHHHhHHHH---HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 007634 150 KPAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---------LMQYDTALGCYEKA 217 (595)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a 217 (595)
.+.|...-. |...-.-. ...-..-+|.+..-.+.-.+|.....|...+..+.. +.+.+.-...|.++
T Consensus 109 ldLW~lYl~-YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 LDLWMLYLE-YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HhHHHHHHH-HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 232221111 10000000 001112334444334444577777777776665542 34455666777777
Q ss_pred HHhCCCCHH-HHHH---------HHHHHHH----cCCHHHHHHHHHHHHhc-------CCCcHH-----------HHhh-
Q 007634 218 ALERPMYAE-AYCN---------MGVIYKN----RGDLESAIACYERCLAV-------SPNFEI-----------AKNN- 264 (595)
Q Consensus 218 l~~~~~~~~-~~~~---------la~~~~~----~~~~~~A~~~~~~al~~-------~~~~~~-----------~~~~- 264 (595)
+...-++.+ .|.. .+..-.- .--|..|...+++...+ +|-+.. .|.+
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 754322211 1111 1111000 11233344444443322 110000 0000
Q ss_pred ---------------------------------HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 265 ---------------------------------MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 265 ---------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
-..+++.-.......++-+.|+...+++....|. ....++.++.
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ye 344 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYE 344 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHh
Confidence 0011111112222344555566555555554444 4555566665
Q ss_pred hcCCHHHHHHHHHHHHhh------------------CCC-CHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHF------------------NPH-CAEA-----------CNNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~------------------~~~-~~~~-----------~~~la~~~~~~~~~~~A~~~~~~al 361 (595)
..++-+.-..+|+++.+. ++. ..+. ++.+-..-.+..-.+.|...|-++-
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 555555555555444331 110 0111 1111122223334555666666655
Q ss_pred ccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 362 SIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+++......-..+...++-..|...|+++++.-.
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 5432223333333322 45677888888888888888888776666666677778888888888887765433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0029 Score=52.59 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666788888999999999999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0029 Score=52.59 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
.++..|......++.+.++..+++++...... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788999999999999999864221 13455677778889999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
++..+|-+..++..+..++...|+..+|+..|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.093 Score=50.75 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
+.+.|........+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 555566666655566666666777777777777777777666666665554 6666677777777777766655443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=66.18 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
+..|.+++|++.+..++.++|.....+...+.++.++++...|+..|..+++++|+...-+-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666555555555555566666666666
Q ss_pred HHHHHHhC
Q 007634 391 IEKAIAAN 398 (595)
Q Consensus 391 ~~~al~~~ 398 (595)
+..+.+++
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 66665554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0002 Score=41.98 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777774
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.059 Score=50.93 Aligned_cols=128 Identities=27% Similarity=0.317 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------C
Q 007634 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------N 349 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~-------~ 349 (595)
..+|...|+.+. ....+.+.+.+|.++.. ..+..+|..+|+++.+..... ..+...++.++..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444555544222 23344455555555554 336666666666666554333 234556666655431 2
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 346777787776664 67778888877754 3378888888888888766 77788888 666555
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=54.85 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=85.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.-|++.++.+|.+.++|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876654432 456788999999999999999998888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
.-+++++..+|++...|..+-... ......-.+......|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~----q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFR----QSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH----HHHhccCcHHHHHHHHHHHHHH
Confidence 999999999999887755432211 1112233566667777666653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.049 Score=45.78 Aligned_cols=120 Identities=22% Similarity=0.136 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A 210 (595)
+.....++....++...-+ ......++..+...+++++|+..++.++....+. ..+-.+++.+...+|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya----~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYA----VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHH----HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444455555555444332 2235567788888899999999999888754442 45667899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
+..+...... .-.+......|.++...|+.++|+..|++++...++.
T Consensus 146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9988764322 1123445678999999999999999999999887544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.022 Score=54.21 Aligned_cols=136 Identities=11% Similarity=0.090 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 007634 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACY 248 (595)
Q Consensus 172 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~ 248 (595)
-.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 346678899999999999999999999999999999999999999999999998888766554443 34577888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
.+++..-....... ..........+.. ...++..+.......|-.+.|+..++..++
T Consensus 126 ~~~l~~L~~~~~~~-----------------~~~~~~~~~~e~~------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 126 EKCLRALSRRRSGR-----------------MTSHPDLPELEEF------MLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHhhccc-----------------cccccchhhHHHH------HHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 88876432211000 0000000000100 134566677777888888888888888888
Q ss_pred hC
Q 007634 329 FN 330 (595)
Q Consensus 329 ~~ 330 (595)
.+
T Consensus 183 ~n 184 (321)
T PF08424_consen 183 FN 184 (321)
T ss_pred HH
Confidence 74
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=48.89 Aligned_cols=187 Identities=22% Similarity=0.217 Sum_probs=135.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ----NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD--- 128 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 128 (595)
......+++..|...+.++-.. .++.....++.++... .+..+|...|+.+ ....++.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCC
Confidence 3445678899999999988662 3347778888887654 3678899999944 455678899999999987
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-------CChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 129 -EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-------GNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 129 -~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
..+..+|..+|+++........ +.....+|.++..- .+...|...|.++-... ++.+...+|.+
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~ 196 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRM 196 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 4599999999999998754432 11133333333332 13347888888887765 78899999988
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 007634 201 YSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---------------DLESAIACYERCLAVSPN 257 (595)
Q Consensus 201 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---------------~~~~A~~~~~~al~~~~~ 257 (595)
|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|...+..+....+.
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 865 4589999999999998876 88888888 666655 666666666666555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.18 Score=50.12 Aligned_cols=384 Identities=11% Similarity=-0.028 Sum_probs=235.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGIL 125 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 125 (595)
-|-..|..-.+.|..+.+...|++.+.--|.+...|..+-... -..|+.+.-...|++|......+ ...|-..-..
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 3445677778899999999999999999998888877654444 34567777888888888865543 3455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH--HHHhCChHHHHHHHHHHHhh--CCCC---HHHHH-HH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKI--DPHY---APAYY-NL 197 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~--~~~~---~~~~~-~l 197 (595)
-..++++..-...|++.++.--.....++. -+...... ....-..+++.+.-...... .+.. .+.+- ..
T Consensus 161 en~qks~k~v~~iyeRileiP~~~~~~~f~---~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEIPLHQLNRHFD---RFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred HhccccHHHHHHHHHHHHhhhhhHhHHHHH---HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 677888999999999998752221111000 00000000 00011112221111111100 0000 00000 00
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDL 272 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l 272 (595)
-.+-...+.++++.....+.+ ...=.++.......+.+..++..++. .|-+..-. ..+...
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~y 303 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIV----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYY 303 (577)
T ss_pred hhccCccchhhHHHHHHHHHH----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHH
Confidence 000000111122222111111 11112333444555556666666543 22222111 122223
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~ 351 (595)
-......|+++...-.|++++--.....+.|...+......|+.+-|...+.++.++ .|..+.+...-+.+-...|++.
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 334456789999999999999888888999999999999999999999999998887 4677888888888999999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCCHHHHHHH
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDA 424 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~ 424 (595)
.|...+++..+..|+...+-.........+|+.+.+.. .+.....-..+. ...+...+.. +.-.++.+.|...
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999889988888888888889999998884 333332221111 2334444443 3446889999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhcc
Q 007634 425 YEQCLKIDPDSRNAGQNRLLAMNYIN 450 (595)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (595)
+.++++..|++...+...+....+..
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999877666544333333
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=58.64 Aligned_cols=77 Identities=25% Similarity=0.197 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33445566666777777777777777777777777777777777777777777777777777777777776665543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.18 Score=49.46 Aligned_cols=298 Identities=11% Similarity=-0.012 Sum_probs=166.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
.+.-..|.-+++...+.++-...+-....-......++..-..+...+.. +...+.+.......|..+......+..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 33444566666766666655443222222111112222222333333333 4455555566677899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH-HHHHHhhh-hhh
Q 007634 202 SELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGT-KVK 277 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~l~~-~~~ 277 (595)
...|+.+.|+..++..++..-. ..-.++.+|.++.-+.+|..|...+....+...-....+..++ -++..-.. +..
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~ 357 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQG 357 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHh
Confidence 9999988888888887761111 2346778888888999999999999988877654443333333 22211111 111
Q ss_pred hcCCHHHHHHHHHHHH---hhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHcC-
Q 007634 278 LEGDINQGVAYYKKAL---YYNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDRD- 348 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~---~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~la~~~~~~~- 348 (595)
..++-++|..+++... ...|++.. .....+.-+...+. .++..+. .+..++.++..-.
T Consensus 358 ~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~ 424 (546)
T KOG3783|consen 358 AGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSR 424 (546)
T ss_pred cccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhccc
Confidence 2335555544444332 22222111 11111111111110 1111111 2234444433221
Q ss_pred -CHHHHHHHHHHHHc---c-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHc
Q 007634 349 -NLDKAVECYQMALS---I-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PT----YAEAYNNLGVLYRDA 415 (595)
Q Consensus 349 -~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~ 415 (595)
..++.. -++..++ . ++++ .--+..+|.++..+|+...|..+|...++.. .+ .|-+++.+|.++..+
T Consensus 425 ~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~ 503 (546)
T KOG3783|consen 425 MSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL 503 (546)
T ss_pred CChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Confidence 222222 1111111 1 2222 2245678999999999999999999888541 11 267999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCCCC
Q 007634 416 GS-ISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 416 g~-~~~A~~~~~~al~~~p~~ 435 (595)
|. ..++..++.+|-+...++
T Consensus 504 ~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 504 GGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccChHHHHHHHHHHHhhcccc
Confidence 99 999999999999887654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0039 Score=46.99 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCcHHHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (595)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 556677777765542 2358899999999999998889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 98888877777888888888888765
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.031 Score=53.76 Aligned_cols=75 Identities=20% Similarity=0.099 Sum_probs=54.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------CC------------Cc---HHHHHHHHH
Q 007634 74 VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP------------QN---ACAHTHCGI 124 (595)
Q Consensus 74 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~ 124 (595)
.+..+|.+.+.+..++.++..+|+.+.|.+.+++++-. ++ .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999998888632 11 11 123444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 125 LYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+.+.|-+..|.++.+-.+.++|.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCC
Confidence 666677777777777777777776
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.14 Score=50.15 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 007634 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (595)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (595)
+...+.+.......|+++...+..+..+...|+.+.|+..++..++ ..........++.+|.++.-+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666677888888888888888888888888888887776 23333345557778888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 007634 179 KYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~la 198 (595)
.+....+.+.-..-.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 88888776655444444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00048 Score=40.88 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556667777777777777777774443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0011 Score=38.76 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
+++.+|.++..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.036 Score=53.38 Aligned_cols=144 Identities=17% Similarity=0.046 Sum_probs=107.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------------~------------~~~---~~~~~~la~ 342 (595)
.+..+|-+.+++..++.++..+|+.+.|.+.+++++-. + +.| -.+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668999999999999999999999999988888642 1 112 234566677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (595)
.+.+.|-+..|.++.+-.+.++|. ++- ++..+-....+.++++--+..++....... .-|...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 788899999999999999999998 654 444444555667788777777776554211 1235677888888888
Q ss_pred CCH---------------HHHHHHHHHHHhcCCCC
Q 007634 416 GSI---------------SLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~~ 435 (595)
++. ++|...+.+|+...|.-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888 89999999999888853
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.49 Score=48.99 Aligned_cols=369 Identities=13% Similarity=-0.005 Sum_probs=214.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---HcCCHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAE 137 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~ 137 (595)
.+.-+.=+.-++.-+..++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..+.-.++..
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 3444555666777777888888999999999999999998888888888888888888776654332 2367778888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~g~~~~A 210 (595)
.|++++.- -.....|...+......+..+...++++.....|.+++..-.. ....+...-..|...-..++-
T Consensus 172 ~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 172 LFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99998864 3445566666666666667777778899999999998875322 234555566666666666777
Q ss_pred HHHHHHHHHhCCCCHH----HHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 211 LGCYEKAALERPMYAE----AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~----~~~~la---~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
+.++...+... -+.+ .+.... .......+++.|..-+.+.+.............-..+...-+.....|+..
T Consensus 251 ~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ 329 (881)
T KOG0128|consen 251 IALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPV 329 (881)
T ss_pred HHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 77777776654 2211 112111 112234556666655554443333322222222233444444455567777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCHHH--------------------------
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHCAEA-------------------------- 336 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~-------------------------- 336 (595)
.-...++++....+.+...|...+...-.. +-.+.+...+.+++...|-....
T Consensus 330 ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~l 409 (881)
T KOG0128|consen 330 RIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDL 409 (881)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 777777777776666666666655443211 11111111111111111111000
Q ss_pred -----HHHHHHHHHH-c-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007634 337 -----CNNLGVIYKD-R-------------DNLDKAVECYQMALSI-KPNFSQSLNNLGVVYT-VQGKMDAAAEMIEKAI 395 (595)
Q Consensus 337 -----~~~la~~~~~-~-------------~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 395 (595)
+.+....+.. . ..+..|..+|...... -......+-..|.++. .+++.+.+....+..+
T Consensus 410 s~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~im 489 (881)
T KOG0128|consen 410 SMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIM 489 (881)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 1111111111 1 1233344444433332 1112334444555543 3567788888877776
Q ss_pred HhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 396 AANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 396 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
........ .|.....+-...|+...+..++++|+..
T Consensus 490 ty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 490 TYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred cCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 66555444 7777888888889999999988888764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.062 Score=44.01 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
-...++.........++.+++..++..+--..|..++.-..-|..+...|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35667888888899999999999999988899999999999999999999999999999999988999998888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 007634 127 KDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~ 147 (595)
..+|+.+ =..+-..+++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 8888753 2333344454443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.43 Score=48.23 Aligned_cols=139 Identities=17% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH----------HHHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH----------THCGILY 126 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~ 126 (595)
.+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. |. .... ...+.+-
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHh
Confidence 34444456677766 34455 7899999999988888888888777654221 11 1111 2234444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~ 204 (595)
.--|++++|.+.|-.+-. .+. + ...+...|+|-...+.++..-.-+. ....++.++|..+..+
T Consensus 745 ~~~g~feeaek~yld~dr---rDL------A------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADR---RDL------A------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred hhhcchhHhhhhhhccch---hhh------h------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 445788888877754321 110 0 1122334555555544433211111 1245666777777777
Q ss_pred CCHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKA 217 (595)
Q Consensus 205 g~~~~A~~~~~~a 217 (595)
..+++|.++|.+.
T Consensus 810 ~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=38.19 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0029 Score=56.48 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4456666666666666666666666666666666666666666666666666666666555544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0051 Score=58.49 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=100.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..|+.-.|-.-+..++...|..+......+.+...+|.|+.+...+.-+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45667777777777777777777777777777777788877777766554443333444445555666778888888777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 007634 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (595)
.-.+...-+++++..--+-....+|-+++|.-++++.+.++|.....+.|.+-...|+..|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 77777666666666666666677777888888888888888877777777766667776665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0024 Score=36.92 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=45.76 Aligned_cols=197 Identities=13% Similarity=-0.003 Sum_probs=120.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCcH-HHHHHHHHHHHHc
Q 007634 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQNA-CAHTHCGILYKDE 129 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 129 (595)
...+.++|+.-|+++++..+... .++-.+..+.+.+|++++-+..|.+.+..- .+.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 467778889999999999999888876531 1111 1111111111122
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 007634 130 GRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------~~~~~~~ 195 (595)
.+.+--.++|+..+.. +..+...|+ ..-..+|.+++..+.|.+-...+.+.-.... .-.++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 3333333444433322 111111111 0123577777777888777776666543311 1234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
.-...|..+.+..+-...|++++.+...- |... -.=|..+.+.|++++|..-|-.+++-.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 66678888888888888999998775432 2222 1225667888999999998888887655443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.42 Score=44.00 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=128.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC--Cc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DP--QN 115 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p--~~ 115 (595)
.+..++.....+++++++..|..++.. .|.+ ......+|..+...|+.++-.......-.. -+ ..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 377888888999999999999999884 2222 246778999999999988765555443221 11 11
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----C--C
Q 007634 116 ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P 188 (595)
Q Consensus 116 ~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~--~ 188 (595)
......+-.... ..+..+.-+..+..+++......... ..-.+-..+...|...++|.+|+......+.. + +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtF-LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTF-LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 122222222222 23344455556666655433222211 11222455777888999999999888776643 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
.-.+++..-..+|+...+..+|...+..+-... |. ....-..-|.++....+|.-|..+|-++++-..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 235667777888899999999988887764432 11 122233346667777899999999999887643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=42.15 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHH
Q 007634 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (595)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3566778888899999999999999999999999999999999888764 445555555555555433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=45.58 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=128.8
Q ss_pred hCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhHH
Q 007634 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADP-----SYKPAAECLAIVLTDLGT 165 (595)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~a~~~~~l~~ 165 (595)
..+.++|+..|++++++.+... .++..+..+++++|++++-...|.+.+..-. +..+-. ...+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 3478999999999999988754 4677888999999999999999988765311 111110 011111
Q ss_pred HHHHhCChHHHHHHHHHHHhh--CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKI--DPHYAPA----YYNLGVVYSELMQYDTALGCYEKAALERPM------------YAEA 227 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~ 227 (595)
.-....+.+--.+.|+..+.. +..+... -..+|.+|+..+.|.+-.+.+.+.-..... -.++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111222333333333333322 1222223 346899999999998888777776543221 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-----HH-
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----AD- 301 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~- 301 (595)
+..-.++|..+.+..+-...|++++.+...-+... .++.+-.--|......|++++|..-|-++.+...+. ..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 55566778888888888888998887754433221 234444444566777888888888777777654322 11
Q ss_pred -HHHHHHHHHHhcC
Q 007634 302 -AMYNLGVAYGEML 314 (595)
Q Consensus 302 -~~~~la~~~~~~~ 314 (595)
-+..+|..+.+.|
T Consensus 273 LKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 273 LKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHcC
Confidence 2444555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.32 Score=49.15 Aligned_cols=253 Identities=13% Similarity=0.037 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhHHHHHHhCChH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~---~~l~~~~~~~~~~~ 174 (595)
.++|+++. +.+| +++.|..+|......-.++-|...|-++-.. +.- .....+..++ ...+.+-..-|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 34454443 3344 6889999999988888888888888766332 110 0001111111 22334444558999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
+|.+.|-.+-..+ .-..++.+.|+|-...++++..-.-.. .-..++.++|..+..+..|++|.++|...-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886542221 123456677787777666654321111 135689999999999999999999998764
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
... +...+++.+ ..+++- +.....-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 824 ~~e--------~~~ecly~l-------e~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DTE--------NQIECLYRL-------ELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred chH--------hHHHHHHHH-------HhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 321 223344432 344432 33344457778888888998888888888888775431 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
+ --.....++++.+|.+.-++- + -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~-~-l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRF-Q-LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 112233445555665544432 1 1222222333333344455555555555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0057 Score=39.59 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.++.+|..+.++|++++|..+.+.++++.|++..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3456677777777777777777777777777776554
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=43.06 Aligned_cols=28 Identities=11% Similarity=-0.153 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 334 (595)
+.-++..|++-+|++..+..+...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 3445555666666666666665554443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.77 Score=44.37 Aligned_cols=135 Identities=11% Similarity=0.008 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++....-.......|+...|-+-+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-...
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 44555555566788999999999999999999999999999999999999999999888766554444444444555556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (595)
...|++++|.....-.+.-.-++++. ....+......|-++++..++++.+.++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 66677777776666665543333332 11122222334555666666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0054 Score=36.29 Aligned_cols=28 Identities=46% Similarity=0.693 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
++.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888885543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.059 Score=44.14 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
.+..+..+-...++.+++...+...--+.|..++.-..-|+++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444555556667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007634 416 GSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (595)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7753 2223334444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.2 Score=40.33 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34566677777778999999999988888899999999999999999999999999999988888888888888888888
Q ss_pred HcCCHH
Q 007634 128 DEGRLV 133 (595)
Q Consensus 128 ~~g~~~ 133 (595)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888743
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.049 Score=49.71 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3444455555555555555555555555555555555555555555555555555555555555543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.02 Score=52.23 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4455666666777777777777777777777776666777777777777777777777777777766553
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=50.51 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=107.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
.+....++..+...+.+++.+++.+.. +...+...+....+......++..+|++..+..+++......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444677777777788888877544 477777788888999999999999999999999999998888877776666
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 007634 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (595)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (595)
+.. +....|++.+....+ +.....+|+..++.....++..+.|.++......+.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 655 788888887766555 9999999999999999999999999998777766555
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=37.25 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
++.+|..+++.|+|++|..+.+.+++.+|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444444444444444444444444444443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.84 Score=42.10 Aligned_cols=208 Identities=17% Similarity=0.096 Sum_probs=124.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
...+......++.++++..+...+.. .|.+ ......+|..+.+.|+..+-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45556666677788999999988874 2221 23678899999999998876665554432211111110
Q ss_pred HHHHHHHhHH-HHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--C
Q 007634 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE----R--P 222 (595)
Q Consensus 156 ~a~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~ 222 (595)
.+.+...+-. +....+....-+..+..+++..... ...-..+..+|...++|.+|+......+.. + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111111111 1222344445555555555542221 223346788999999999999988877643 1 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 223 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
.-.+++..-..+|+...+..+|...+..+-.....-.......+.+-..-|..+....+|..|..+|-++++-
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 2355667778888888999999888877654322211111123444455566666677888888888777754
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.05 Score=47.95 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH-------HHHHHHHHHhhCCC------CHHHHHH
Q 007634 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYYN 196 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~~ 196 (595)
..+++|++.|.-++-...-...-....|.++..++.++...|+.+. |++.|.++++.... ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3555666666555432111011111356667777777777777444 44444444433211 2355566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 007634 197 LGVVYSELMQYDTALGCYEKAALER 221 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~ 221 (595)
+|.+..+.|++++|..+|.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 6666666666666666666666543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.051 Score=40.21 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhhhhhHHHHhhhccCCC
Q 007634 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS--RNAGQNRLLAMNYINEGH 453 (595)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~ 453 (595)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..++..++-.+..+..++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 556777888888888888888888888888888888888888888766 334444444444444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.9 Score=45.39 Aligned_cols=145 Identities=10% Similarity=-0.062 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
.+..+..|...++.|++..+..+..++ ..+|- ..+..........+.. ....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467888899999999988887766653 33443 2233322222222221 122445556677777765544444333
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 128 ---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+.+++..-+.++ ...|.+... ....+......|+.++|.....++-......+.....+-..+.+.
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHc
Confidence 344444444322 123544443 233334455667777776666666555544455554444444444
Q ss_pred CCHH
Q 007634 205 MQYD 208 (595)
Q Consensus 205 g~~~ 208 (595)
|...
T Consensus 177 g~lt 180 (644)
T PRK11619 177 GKQD 180 (644)
T ss_pred CCCC
Confidence 4433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0096 Score=51.01 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345567888899999999999999999999999999999999999999999999999988655433
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=39.29 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCcH----
Q 007634 346 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---- 402 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~---- 402 (595)
..|-|++|...++++++.... +.-++..|+..+..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 445666666666666655221 123555667777777777776665555554 344433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.+.++.+..+..+|+.++|+..|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 35567888889999999999999888654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.035 Score=53.74 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..++..+..|.-.+..+.+..|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 45566666777777778899999999999999999999999999888765 466678899999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+.++...+++.+|+.+...+....|.+.
T Consensus 452 a~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998888888543
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1 Score=40.50 Aligned_cols=216 Identities=13% Similarity=-0.012 Sum_probs=123.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
+++|+...+.+++++|+..|.+++...- +.......++..|...|++..--+..... .+++...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~f- 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDF- 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHh-
Confidence 7889999999999999999999987621 12346777888888888876543333221 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
--.+..+..+..++..|..++.......++..+..... .+-...++. ..-..+..++++
T Consensus 79 -------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-----rEkr~fLr~---------~Le~Kli~l~y~ 137 (421)
T COG5159 79 -------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-----REKRKFLRL---------ELECKLIYLLYK 137 (421)
T ss_pred -------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHh
Confidence 11223344555555555444332211111111100000 001111121 223457788889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
.|+|.+|+......+.. .+.-...+..-..+|....+..++...+..+-.....-.......+..-..-|...+
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776542 344566777778888888888888777766544322111111123444445566666
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 007634 278 LEGDINQGVAYYKKALYYN 296 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~ 296 (595)
...++..|-.+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 7778888888888877643
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.01 Score=33.81 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
++..+|.++..+|++++|..+++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.71 Score=38.17 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--c--HHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTH 121 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~ 121 (595)
....+..|..+.+.++.++|+..|..+-+..-.+ .-+.+..|.+....|+...|+..|..+-...|- - -.+...
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3455677777888888999999998876654443 346677788888889999999999887665432 1 224455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (595)
-+.++...|.|++-..-.+..-. +.++- ...+-..+|...++.|++.+|...|.+... +...+....+.+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~--d~n~m----R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG--DGNPM----RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC--CCChh----HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 56677777877766555443321 11111 111234455556666777777777766555 333444444444443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.34 Score=37.04 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------c
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (595)
.+..|...+..|-|++|...++++++.... ++-++..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 355677888899999999999999885321 234677889999999999998887777765 4
Q ss_pred CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 112 DPQNAC----AHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 112 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+.+... +.+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 555433 4567788899999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=42.36 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.++....-..+-..+.+.|-+.+|...|.+...+.|-....+..+..+-.. .-+...+..+|+.++.....+++.|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345555556666777888889999999999888888777766666555332 234778889999999888888999988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKI-DPD 434 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~-~p~ 434 (595)
.-..-..+|..+.+-..|.+|++. +|.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHhhChh
Confidence 888888999999999999998864 444
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=3.3 Score=45.24 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=90.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
-.++...+.|+.|+..|+++-...|.-.+.+. ..+..+...+........+.+|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 45677788999999999999999987655433 333333333332222235777888777643 35667788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc
Q 007634 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~ 258 (595)
+|..+|++++-+++|.-+++..|+.|..-...-.+..++ .+-..|....--++...|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999998765433332222221 12234555555555565653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.81 Score=45.96 Aligned_cols=63 Identities=17% Similarity=0.043 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEK-------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
.....+|-.+|+..+..=+++-|.+.|.++-.. ......--..+|..+.-.|++.+|.+.|.+
T Consensus 582 gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 582 GVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344567888888888888899998888776321 011112234567777777888888777765
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=45.82 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 335 EACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
.+.+.+|.+..+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555566666666666666666665554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.13 Score=40.37 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.....+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|++..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3567778888887665 45567888888886 44433 46788888888999999999999999999998887764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.22 Score=40.03 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
..-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344667777777776666667777777777777777777777777777777766666666666777777777765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.19 Score=42.94 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
..++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....++.++-....... .+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-DWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-hHHHHHH
Confidence 356777888888888888888888887665433 245677777888888888888888887765533311 1222222
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+-...|......++|.+|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22223333333455555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.1 Score=37.14 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=95.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--C--HHHHHHHHHHHHhcC
Q 007634 309 AYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQG 382 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g 382 (595)
-+...++.++|+..|...-+..-.. ..+.+..+.+..+.|+...|+..|..+-...|. - ..+...-+.++...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3456678888988888877664433 456677889999999999999999988765432 1 224455677788889
Q ss_pred CHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 383 KMDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 383 ~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
-|++-....+..- ..+|-...+...||..-.+.|++.+|.+.|.+... +...+....+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 9988776665542 22455567888899999999999999999999887 4333433333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.8 Score=42.38 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=111.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------CCCcHHHHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DPQNACAHTH 121 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~ 121 (595)
..+...|.+++|...----+ . ..-|..+|...+..=+++-|.+.|.++-.+ ....| --..
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLL 637 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHH
Confidence 35677888887765421111 1 123555666666666677777777655322 11112 2234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI-VLTDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLG 198 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~-~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la 198 (595)
+|..+.-.|++.+|.+.|.+.-.. ..+...... -.+..+.-+...|.-++-....++-.+- +-+.+. .-+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 677777788888888888754211 111110000 0233344444444444443333332111 111222 134
Q ss_pred HHHHHcCCHHHHHHHHH------HH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 007634 199 VVYSELMQYDTALGCYE------KA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~------~a----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 268 (595)
..+...|+.++|+...- -+ -+++....+.+..++..+.....+.-|.+.|.+.-..
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------- 776 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------- 776 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------------
Confidence 55566666666665431 11 1222233344444444455555555555554443111
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
..+-......+++.+|..+.++.-+.- +++++-.|..+....++++|.+.|-++
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 011122223456666655544432221 235555566666666666665555443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.13 Score=55.91 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=126.5
Q ss_pred HHHhhhhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 007634 269 LTDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 333 (595)
....|......+.+.++.+ .+. ....++|.....+..++.++...+++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444444555666776666 554 233457888899999999999999999999988877654 3556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------ 399 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 399 (595)
...+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 778889999999999999999999888765 355556778899999999999999999999998632
Q ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 400 --TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 400 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.....+..++.++..++++..|....+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 22456777888888888888888887777654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.3 Score=41.72 Aligned_cols=103 Identities=11% Similarity=-0.110 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57889999999999999999999998776543 2457788888888999999999998888765333 1113333334
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
-...|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 444555666667777777777665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.026 Score=31.95 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
+..+|.++...|++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.42 Score=37.63 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.+..+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.++|++++.+.+..++..|++.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 455666666666544 44566777777775 33332 4566777777778888888888888888877777665543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.027 Score=48.35 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=36.7
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34455666666666666666666666666666666666666666666666666666543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=4.1 Score=42.91 Aligned_cols=339 Identities=9% Similarity=-0.091 Sum_probs=154.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-+...++.+|+.+..-......... .+++..-+.+ ....|.+....+..+......|+.++|....+++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4445566778777655544444433 4455544442 22357888888888888999999988888888876655
Q ss_pred CCCHHHHHHHHHHHH-----------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 007634 147 PSYKPAAECLAIVLT-----------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCY 214 (595)
Q Consensus 147 ~~~~~~~~~~a~~~~-----------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 214 (595)
...+.....+-..+. .........|+...|......+ .++ ... ++..... ..+...+...+
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~-~~~---~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PAD-YQT---IASALIKLQNDPNTVETFA 232 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---Chh-HHH---HHHHHHHHHHCHHHHHHHh
Confidence 443333222211111 1122223334444333322211 010 000 1111100 01111111111
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 215 EKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 215 ~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
.. ..|.. ......++..-....+.+.|...+.+......-....... +...++......+...+|...+..+.
T Consensus 233 ~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~---~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 233 RT---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE---LRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 10 00111 0111222222334445556666655543333222211111 11111111111111334444444332
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------- 364 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------- 364 (595)
.... +.+.......+....++++.+...+...-..........+-+|..+...|+.++|...|+++....
T Consensus 307 ~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~ 385 (644)
T PRK11619 307 MRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQ 385 (644)
T ss_pred cccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2211 122222222233355555555444444333233344555555555555566666655555543210
Q ss_pred -------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 365 -------------PN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 365 -------------~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
|. ........+..+...|+...|...+..++.. .+..-...++.+....|.++.++....
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00 0012344566677788888888888777764 235566777888888888888877665
Q ss_pred HH
Q 007634 427 QC 428 (595)
Q Consensus 427 ~a 428 (595)
++
T Consensus 464 ~~ 465 (644)
T PRK11619 464 AG 465 (644)
T ss_pred hc
Confidence 43
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.27 Score=53.59 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=96.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Q 007634 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (595)
...+..++.+......|.+.+|.+ ++... -...|.....+..++..+...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567788899999999999998888 55533 2357888899999999999999999999998877654
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
.|+....+..++...+..++...|...+.++..+ .|..+.. +.+..+++.++...++++.|+.+.+.++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2445667788888888888888888887777653 2222221 22234444444555566666666666655
Q ss_pred h
Q 007634 186 I 186 (595)
Q Consensus 186 ~ 186 (595)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.066 Score=51.94 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
..|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....++.++|....+++.|+.++..++++.+|+++...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 3444444444444444444444444444432 2333444444444444444444555555555555555555544444
Q ss_pred HHhcCC
Q 007634 428 CLKIDP 433 (595)
Q Consensus 428 al~~~p 433 (595)
+....|
T Consensus 471 lq~~~P 476 (758)
T KOG1310|consen 471 LQMSFP 476 (758)
T ss_pred HhhcCc
Confidence 444444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.32 Score=34.20 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHhCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG---KGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~ 110 (595)
.+...++.|..++.+.+.++|+..++++++..++.+.-+.. +..++...|+|++.+.+..+-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888889999999888887776654444 44556777888877776554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.1 Score=41.55 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----------------
Q 007634 61 RNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----------------- 111 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 111 (595)
...|++|...|.-+... .|.+.+.++.++.+...+|+.+.|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45666777777666543 5777899999999999999999888888877632
Q ss_pred ----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 007634 112 ----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTD 162 (595)
Q Consensus 112 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~a~~~~~ 162 (595)
.|.|-. +++..-..+.+.|-+..|.++++-+++++|. ++-....+..++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 222322 3333445566789999999999999999998 66654444343333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.092 Score=32.12 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887765
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=5.4 Score=40.44 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
+-+-|.-.++..+|..+++.|...+...|.+...... +.....+..||....+.+.|.++++++-+.+|.++-......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3344666778889999999999999988876654443 788889999999999999999999999999999999888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007634 199 VVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (595)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998887654
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.068 Score=48.21 Aligned_cols=82 Identities=6% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN-LGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 325 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
++....++++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...+.+++..+|+++.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3333445555555555555555555555555555555555555555544 333344455555555555555555555555
Q ss_pred HHH
Q 007634 404 AYN 406 (595)
Q Consensus 404 ~~~ 406 (595)
.|.
T Consensus 178 iw~ 180 (435)
T COG5191 178 IWI 180 (435)
T ss_pred HHH
Confidence 444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=5.4 Score=39.33 Aligned_cols=168 Identities=11% Similarity=-0.034 Sum_probs=96.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
-.+.-....+.+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++.+.+..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 34444556667777654 4567888999999988 66778889999999988888888888888877 888999999999
Q ss_pred HHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-YADAMY-NLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 251 al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
++...-.... ...+-.++..+-. .-..+.+.-+....+....... ...+.+ .+-.-|....++.+|++.+...++
T Consensus 157 a~yrfI~~~q-~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 157 ALYRFIPRRQ-NAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHhcchhh-hhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 8764322000 0000111111100 0012333333333332222111 122222 222344555667777777777777
Q ss_pred hCCCCHHHHHHHHHHH
Q 007634 329 FNPHCAEACNNLGVIY 344 (595)
Q Consensus 329 ~~~~~~~~~~~la~~~ 344 (595)
.+..+..+.-++...+
T Consensus 234 ~d~k~~~ar~~~i~~l 249 (711)
T COG1747 234 HDEKDVWARKEIIENL 249 (711)
T ss_pred hcchhhhHHHHHHHHH
Confidence 6666655555444433
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.3 Score=41.38 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=98.3
Q ss_pred hCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 007634 170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----------------- 220 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 220 (595)
...|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577788777766654 5667889999999999999999988888887531
Q ss_pred ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 007634 221 ----RPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (595)
Q Consensus 221 ----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (595)
.|.+- -+++..-..+.+.|-+..|.++++-.++++|. ++.....+...|...+ .+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence 12222 23444456677889999999999999999998 7765555555544443 3444344443333
Q ss_pred -----HhhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC
Q 007634 293 -----LYYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 332 (595)
Q Consensus 293 -----~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~ 332 (595)
+...|+.+ .-..+|..|..... -+.|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 12223321 22234444444443 45566666666666653
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=5.1 Score=38.41 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG------------EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 348 (595)
..+++++.-.+.+..+|+...+|...-.++. ...-.++-+.+...+++.+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456677777777888877665544332222 2224566778888999999999999999999999876
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC
Q 007634 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD------AG 416 (595)
Q Consensus 349 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g 416 (595)
++..=++.++++++.+|.+..+|...=.+..... ...+=+++..+++..++.+..+|.....++.. .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4688899999999999999887766555544433 35667889999999999999999888877763 33
Q ss_pred C------HHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 417 S------ISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 417 ~------~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+ ...-.+.-..|+-.+|+|..+|.-.
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 2 2344566677888899999887654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.12 Score=31.52 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888888777777765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.9 Score=41.74 Aligned_cols=167 Identities=16% Similarity=0.043 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
..+.-.-.-+....+|+++++....+ +.+..-| .......+..+..+|..+.|+...+ +++..+.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe--- 326 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE--- 326 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---
Confidence 33444445566678999999887775 2232222 3456677778888898888877643 3444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+..+.|+++.|.+..++. +++. .|..+|.....+|+++-|.++|+++- -+..+..+|...
T Consensus 327 LAl~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~ 386 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSST 386 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHh
Confidence 456788888887765432 2333 38888888888999999999888753 244566677777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
|+.+.-.+..+.+......+ ..-.++...|+.++.++.+.+.
T Consensus 387 g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 77766555555554433221 1123344456666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.9 Score=39.94 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAV 354 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~ 354 (595)
.+++-+.+...+++.+|+...+|.....++.+.+. +..=+...+++++.+|.+-.+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888889999999999999999999998764 688899999999999999777766554444332 356778
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh------cCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTV------QGK------MDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
++..+++..++.+..+|.....++.. .|+ ...-++.-..++-.+|++..+|+..-..+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 88999999999999999988887762 231 23345566666777999988887744433
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.77 E-value=10 Score=39.85 Aligned_cols=382 Identities=13% Similarity=0.018 Sum_probs=209.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
......+.+-..+...|++++-...-.++.+..|..+..|.....-... .++..++...|++++.-. +++..|...
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~ 189 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEV 189 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHH
Confidence 3445566777788889999988888888888888888877765554432 367778888999988643 444445444
Q ss_pred HHHH-------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC---HH
Q 007634 123 GILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---AP 192 (595)
Q Consensus 123 a~~~-------~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 192 (595)
+... ...++++.-...|.+++..-.....--..+..++...-..+...-..++-+.++...+...-+. ..
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~ 269 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGW 269 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHH
Confidence 4433 4456788888899998875443322222234445555555555555677777777777654211 11
Q ss_pred HHHHHH---HHHHHcCCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 193 AYYNLG---VVYSELMQYDTALGCYEK-------AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 193 ~~~~la---~~~~~~g~~~~A~~~~~~-------al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.|.... .......+++.|...+.+ .++..+.....|..+-......|+.-.-...+++++...+.+...|
T Consensus 270 ~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~w 349 (881)
T KOG0128|consen 270 DLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALW 349 (881)
T ss_pred HHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHH
Confidence 111111 111233445555544333 3333444445566666666777777777777777776666655555
Q ss_pred hhHHHHHHH---hhhh----hh-hcCCHHHHHHHHHHHH---hhCCCC-----------HH---HHHHHHHHHH-hcC--
Q 007634 263 NNMAIALTD---LGTK----VK-LEGDINQGVAYYKKAL---YYNWHY-----------AD---AMYNLGVAYG-EML-- 314 (595)
Q Consensus 263 ~~~~~~~~~---l~~~----~~-~~~~~~~A~~~~~~~~---~~~~~~-----------~~---~~~~la~~~~-~~~-- 314 (595)
...+...-. ++.. +. ..+...-...++++++ ..+... .. .+.+....+. ..+
T Consensus 350 i~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~ 429 (881)
T KOG0128|consen 350 IGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNI 429 (881)
T ss_pred hhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 443322110 0000 00 0001111111111111 111100 00 0111111111 111
Q ss_pred ----C-------HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHh
Q 007634 315 ----K-------FDMAIVFYELAFHF-NPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTV 380 (595)
Q Consensus 315 ----~-------~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~ 380 (595)
+ +..|..++...... -......+...|.+... +++.+.+.......+........ .|.....+-..
T Consensus 430 ~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 430 IDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 1 33344444433332 11223445555555543 56888888888887777655544 78888888888
Q ss_pred cCCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 381 QGKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.|+...+..++++++.. +|++ .+++..+-......|.++.....-.+.
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 89999999998888765 3432 345555566666677777666554443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.68 Score=41.71 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
.++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|-+.-|++.++..++..|+.+.+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 34444556666666666666666666666666666666666666666666666666666666665443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.18 Score=45.59 Aligned_cols=88 Identities=3% Similarity=-0.064 Sum_probs=68.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN-LGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
.|.++....++++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++.+.+...+.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455556677888888888888888888888888888888888888888876 455566778888888888888888888
Q ss_pred CHHHHHHHH
Q 007634 367 FSQSLNNLG 375 (595)
Q Consensus 367 ~~~~~~~la 375 (595)
++..|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 888776543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=14 Score=39.90 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=69.5
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH-------
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------- 226 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~------- 226 (595)
+..++..|...|..++|++.+.+..... +.....+-..-..+...+.- +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678889999999999999999988733 33344455555555566655 6666666666666654211
Q ss_pred ----HH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 007634 227 ----AY--CNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD 271 (595)
Q Consensus 227 ----~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 271 (595)
.- ...-.-+......+-++.+++.++..... ....+..++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00 11122245667788888999998877655 33334444444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=10 Score=37.58 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+-..++.+-..+-++.++.-...++.+++... .+-.+++.++.||... ..++-...+++.++.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34455666666666667777777788877753 4567788888888877 446677778888888877777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 007634 127 KDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~ 145 (595)
.+ ++...+..+|.+++..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HH-hchhhHHHHHHHHHHH
Confidence 66 7778888888887753
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.94 E-value=7 Score=35.43 Aligned_cols=209 Identities=10% Similarity=-0.018 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH---HhhC--CCCHHH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---LKID--PHYAPA 193 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---l~~~--~~~~~~ 193 (595)
..+++-..+.+++++|+..|.+.+..... +.......-.....++.+|...|++..--+..... .... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 34555566677777777777777765322 11222222334566777777777765444333222 2111 111111
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 194 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
...+-.-+ .....++.-+......++-.... ...-..+..++++.|+|.+|+......+....... ....+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-DK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-DKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-Ccccee
Confidence 11111111 12234455555555544432111 23345567889999999999998877654321110 001112
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhh-----CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYY-----NWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
.++..-..+|....+..++...+..+-.. .|... ..-..-|...+...+|.-|..+|-++++-
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22222233333344555554444433221 23221 22223355566667788888887777764
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=92.87 E-value=4.1 Score=39.88 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH--HHHHH--HHHHHHhCCHHHHHHHHHHHHHc
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (595)
+..+..+..+++.++|..|.++++.+...-|.+.. .+..+ |..+...-++++|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999886344433 44444 34446778899999999988765
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.74 Score=34.50 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
..+.|++.+|++.+.+............ ..+..++..++.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888888887776543322211 123334555666666666666666666666654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.49 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 007634 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (595)
.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455556666666666666666 3355555544
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.59 E-value=8.3 Score=35.44 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 007634 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 221 ~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~ 254 (595)
.|...+.+...+. .|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554443 356678888888777666554
|
; PDB: 3LKU_E 2WPV_G. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.4 Score=40.40 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3466667777778888888888888888888888888888888888888888888888777653
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.42 E-value=8.8 Score=35.30 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
.+++.+..+|..+.+.|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35778888888888888887777666
|
; PDB: 3LKU_E 2WPV_G. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.63 Score=41.90 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
..++-..+...++++.|....++.+.++|+++.-+.-.|.+|.++|-+.-|++.+...++..|+++.+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34444556666677777777777777777777666777777777777777777777777777776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.22 Score=26.74 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.08 E-value=2 Score=41.00 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 122 CGILYKDEGRLVEAAESYHKALSADP-----------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~~-----------~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
-|..++++++|..|..-|..++++.. ...+....-..+...+..||...++.+-|+...-+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35567777888888777777776532 2223333334455667888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
..-+...|.++..+.+|.+|-..+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887665443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.3 Score=42.25 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=76.8
Q ss_pred CchHHHHH----HHHHHHhCCCHHHHHHHHHHHHHcC--------CC-----CH-----HHHHHHHHHHHHhCCHHHHHH
Q 007634 46 FEGKDALS----YANILRSRNKFVDALALYEIVLEKD--------SG-----NV-----EAHIGKGICLQMQNMGRLAFD 103 (595)
Q Consensus 46 ~~~~~~~~----~a~~~~~~g~~~~A~~~~~~~l~~~--------p~-----~~-----~~~~~la~~~~~~g~~~~A~~ 103 (595)
...+.|+. -|...+++++|..|..-|..+++.- |. +. .+-..+..||+.+++.+.|+.
T Consensus 170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 34555544 5667888999988888888888742 21 11 234568899999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
...+.+.++|....-+...|.++..+.+|.+|...+--+
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=7.4 Score=40.92 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYS 202 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~ 202 (595)
.++.+...|+-|+...+.- ..+.+ .++.+....|..++..|++++|...|-+.+.. +|.. + ..-+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~----~~d~d---~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--V----i~kfL 408 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ----HLDED---TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--V----IKKFL 408 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc----CCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--H----HHHhc
Confidence 4456666777777665432 11222 24566888899999999999999999888765 2321 1 11123
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.++.++
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 333444555666666666656666667778889999988776555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.1 Score=41.04 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
...+..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999999999999999999999999988664
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.76 Score=34.46 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 380 VQGKMDAAAEMIEKAIAANP---------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
..|++.+|.+.+.+.+.... ....+..++|.++...|++++|+..+++++++..+.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544311 113456667777777777777777777777765443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.64 E-value=12 Score=37.34 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
.++++++....+.. ++.|.- ......++..+...|.++.|+...+ ++...+.|+ .+.|+.+.|.+..
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHH
Confidence 46677665555411 111221 3345566667777777777766532 233333333 4566666665543
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 358 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
+ ..+++..|..||.....+|+++-|.++|+++
T Consensus 342 ~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 342 K-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred H-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 2235566777777777777777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.56 E-value=11 Score=34.84 Aligned_cols=144 Identities=12% Similarity=0.015 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 007634 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (595)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~ 165 (595)
+.+-....+..+..+-++....+++++|....++..++.-- ..-..+|...++++++..... ++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 34445555667777888888899999999988888877543 334667888888887753321 11111
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~ 242 (595)
.....|...+|. .+.+.+ ....-..++.+..++|+..+|.+.++...+..|-. ..++-++-..+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222221 111111 12233467888888888888888888887776632 223444444555544444
Q ss_pred HHHHHH
Q 007634 243 SAIACY 248 (595)
Q Consensus 243 ~A~~~~ 248 (595)
+....+
T Consensus 329 DvqavL 334 (556)
T KOG3807|consen 329 DVQAVL 334 (556)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.78 Score=26.94 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALAL 70 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~ 70 (595)
.++..|-.+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=91.43 E-value=11 Score=34.15 Aligned_cols=64 Identities=9% Similarity=0.181 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD 112 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 112 (595)
+.++.+|..+.+.|+|++.+.+.++++..+|. +.+-...++.+|- ..|....+...+.......
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 46788999999999999999999999998775 4555666666663 3355556666665554443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.38 E-value=2 Score=30.30 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH---THCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
-....|.-++...+.++|+..++++++..++.+.-+ -.+..+|...|+|.+.+.+.-+-+++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677889999999999999999988776644 44556788899999988877665543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.37 E-value=14 Score=35.45 Aligned_cols=201 Identities=17% Similarity=0.050 Sum_probs=116.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------C------C
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q 114 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~ 114 (595)
.....|-+.+--...-++++.-|. +...++.+...++..|. ++...+...+-.. | .
T Consensus 39 ~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~ 116 (493)
T KOG2581|consen 39 AQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALK 116 (493)
T ss_pred HHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccccccc
Confidence 345566555555555556655443 34455555555544443 4544444433210 1 0
Q ss_pred ------cHHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhcC-CCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 115 ------NACAHTH-CG-ILYKDEGRLVEAAESYHKALSAD-PSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 115 ------~~~~~~~-la-~~~~~~g~~~~A~~~~~~~l~~~-~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
..+++.. ++ ..+..++++.+|..+-...+... -.+ ......-+.+|+.+...+...|+...-...+...+
T Consensus 117 ~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l 196 (493)
T KOG2581|consen 117 RKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL 196 (493)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 0223322 23 23344688888888877665431 111 12222335567777777888888666555555444
Q ss_pred hh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 185 KI-----DPH-YAPAYYNLGVVYSELMQYDTALGCYEKAAL----ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 185 ~~-----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
.. +.. .......+-..|...+.|+.|.....+..- .+...+..++.+|.+..-+++|..|.+++-+++..
T Consensus 197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 33 111 234455667778888888888888777641 11123556777888888899999999999999998
Q ss_pred CCCcH
Q 007634 255 SPNFE 259 (595)
Q Consensus 255 ~~~~~ 259 (595)
.|.+.
T Consensus 277 apq~~ 281 (493)
T KOG2581|consen 277 APQHA 281 (493)
T ss_pred Ccchh
Confidence 88743
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=13 Score=34.60 Aligned_cols=60 Identities=12% Similarity=-0.140 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
.-.+.-+...+..+..+-++.-..+++++|+.+.++..++.-- ..-..+|.+.|+++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 3345556667788888889999999999999999999887643 23466788888888765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.34 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~ 391 (595)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.92 E-value=3.8 Score=35.28 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 007634 351 DKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 351 ~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555443222 1234666666666555 45667777777777766432 3677777777777777777664
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.84 E-value=16 Score=35.11 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=100.9
Q ss_pred chHHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCC-C--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---
Q 007634 47 EGKDALSY--ANILRSRNKFVDALALYEIVLEKDS-G--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--- 112 (595)
Q Consensus 47 ~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (595)
+.+.++.+ ...+..++++.+|..+-+..+..-- . .+..|+.+..++...|+...-...+...+...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 45555443 4455667999999998887765311 1 24578888888888998777666666555432
Q ss_pred --C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 113 --P-QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 113 --p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
. ........+-..|...+.|+.|.....+.. .|+.... ...+..++.+|.+...+++|..|.+++-+++...|.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 223455666788888999999998887764 3433222 245777899999999999999999999999999997
Q ss_pred C
Q 007634 190 Y 190 (595)
Q Consensus 190 ~ 190 (595)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=90.61 E-value=15 Score=34.36 Aligned_cols=158 Identities=12% Similarity=0.083 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------------------HHHHHHHHHHHHhhC-CCC
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------------------FDMAIVFYELAFHFN-PHC 333 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------------------~~~A~~~~~~~l~~~-~~~ 333 (595)
--++|+..-.-...+.|..++++-.++.+++...+ .+++...+.+++... |.-
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence 45778888888888899999988887777654322 467777777777653 333
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHH
Q 007634 334 AEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYN 406 (595)
Q Consensus 334 ~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 406 (595)
....-.++.++.. .-++..-..+|.-.....|+ +.+-.|.+....+..-.+.++...+..... -....-.+.
T Consensus 291 YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~ 369 (415)
T COG4941 291 YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHA 369 (415)
T ss_pred HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHH
Confidence 3333344444433 23666666677666666654 555566777776766777777777766554 223345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
..|.++.++|+.++|...|++++.+.++..+..
T Consensus 370 ~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 789999999999999999999999998876543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.43 E-value=18 Score=39.13 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCcHHHHhhH-
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALER----PMYAEAYCNMGVIYKNRGDL--ESAIACYERCLAVSPNFEIAKNNM- 265 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~- 265 (595)
-+..|+.+|...|+.++|++.+.+..... +...+.+-..-..+...+.. +-..++-.-.+..+|......+.-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36778899999999999999999887733 33344444455555555554 556666666666666533111000
Q ss_pred -----HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 266 -----AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 266 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
+.+-...-.-+......+-++.+++.++.....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~ 623 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL 623 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc
Confidence 000000001123345666677777777766544
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.1 Score=36.28 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 98 (595)
...+..+..|+..+..|+|.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999888888777643
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.72 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
+..||.+-...++|++|+..|+++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.89 E-value=5.1 Score=34.50 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 007634 172 NTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (595)
Q Consensus 172 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~ 245 (595)
.-++|...|.++-... -++++..+.+|..|. ..+.++++..+.++++..+. +++++..|+.++...|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566777776654332 246888888888777 67899999999999987543 5899999999999999999885
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.64 Score=27.65 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+++..||.+-...++|++|..-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=89.61 E-value=21 Score=35.65 Aligned_cols=54 Identities=17% Similarity=-0.073 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (595)
....+|.+++..|+|+-|...|+.+.+-.. +..++..+|-++...|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhcCC
Confidence 456789999999999999999998877433 345566666666666666666553
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=31 Score=35.42 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..+...|...++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.+.+++|-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345678889999999999999999999876654 45677889999999999999999999999999999998888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 123 GILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-.+....|.-++|+.+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 899999999999999998876643
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=88.36 E-value=29 Score=34.63 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=91.3
Q ss_pred CchH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHc
Q 007634 46 FEGK-DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMG-------RLAFDSFSEAVKL 111 (595)
Q Consensus 46 ~~~~-~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 111 (595)
..++ ..-.+|..++-.|+|+-|...|+.+.+..-++ +.+....|.+++..+.. ++...+++.++..
T Consensus 205 ~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 205 DSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred CChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 3444 44558999999999999999999887643322 12333445555555522 2333344433321
Q ss_pred -----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhHHHH--HHhCChHHH
Q 007634 112 -----------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSL--KLAGNTQDG 176 (595)
Q Consensus 112 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~A 176 (595)
......+....+.++...|.+.+|...+-+.... ..+... ..-+.++...+.++ ........-
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~--~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP--FGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh--HhhHHHHHHHHHhhcccccCCCCcc
Confidence 1123456667778888888888887777666654 222110 00233444555555 111000000
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 007634 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222 (595)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 222 (595)
...+++ .+..+..-|.-|...|+...|+.+|.+++....
T Consensus 363 ~~r~RK-------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTRFRK-------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chhhHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000010 122233446677788888888888888876643
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=88.33 E-value=12 Score=30.37 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=27.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
...+.....+.+++.++..++.++..+..+..+|.+.+ ..+.+.+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34556667777777776666666666666666665542 334444444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.6 Score=38.23 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+...+..|...|.+.+|+++.++++.++|-+.+.+..+-.++..+|+--.|.+.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667778888888888888888888888888888888888888777777777654
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.42 E-value=2.1 Score=39.94 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
|..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887765567788888888776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.09 E-value=20 Score=32.69 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
+...+|..|+..|++++|+++|+.+...... ...++..+..|+...|+.+..+.+.-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445566666666666666666666443221 1345556666666677666666555443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.00 E-value=2.8 Score=39.14 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
|..+|.+|..+.|..+..+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765568888888888776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=86.90 E-value=27 Score=32.71 Aligned_cols=161 Identities=15% Similarity=0.040 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHhcCC-CCH
Q 007634 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------------------------RLVEAAESYHKALSADP-SYK 150 (595)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~~l~~~~-~~~ 150 (595)
-++|+..-.-...+-|..++++-.++.+.++.. -.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 367888877788888988888877777665422 25667777777776543 211
Q ss_pred HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q 007634 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAY 228 (595)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 228 (595)
.....++.++- .......-+|..-..+|.-.....|+ +.+-.|.+.......-.+.++...+.+... -......+
T Consensus 292 qlqAAIaa~HA--~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 292 QLQAAIAALHA--RARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred HHHHHHHHHHH--hhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 11111111111 11122334666666667666666665 555566777777766777788877776554 23345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 229 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
...|.++.+.|+.++|...|++++.+.++..+.
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 778999999999999999999999998876543
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=86.70 E-value=34 Score=33.59 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
+...+.+++..+|+|..|++.++..-- ..+-....++.+|-+|..+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777654311 1222355677788888888888888888877653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.54 E-value=47 Score=35.14 Aligned_cols=158 Identities=17% Similarity=0.060 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHH
Q 007634 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166 (595)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~ 166 (595)
..-.++...|+|+.|+.++-+ .+.+..--..+|.++...|-+...-..-...+...+.++.. ..++.+......
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~- 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR- 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH-
Confidence 344567788999999998876 22222222223333333333332222225555555554332 444555555444
Q ss_pred HHHhCChHHHHHHHHHHHhhC-CCCH-HHHHHHHHHHHHcCCHHHH--------------HHHHHHHHHhCCCC---HHH
Q 007634 167 LKLAGNTQDGIQKYYEALKID-PHYA-PAYYNLGVVYSELMQYDTA--------------LGCYEKAALERPMY---AEA 227 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~-~~~~-~~~~~la~~~~~~g~~~~A--------------~~~~~~al~~~~~~---~~~ 227 (595)
.+...+..+|+++|--+-... |... ..+..+..+....++++.= ++-..+.+...... ..+
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHH
Confidence 445678888888775433221 2211 1222333333333332221 11111122222211 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 228 YCNMGVIYKNRGDLESAIACYER 250 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~ 250 (595)
....|.-....|++++|+..|.-
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666677777777776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.48 E-value=26 Score=32.02 Aligned_cols=27 Identities=0% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
-+.+..++...|+..+|+..+++=+..
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455667777788888888887765544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.32 E-value=1.9 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
+.||..|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455666666666666666666653
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=86.16 E-value=17 Score=32.77 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 194 YYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
+..++.+..+.|+|++.+.++++++..++.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 345566666666677777776666666554
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.92 E-value=6.4 Score=34.21 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344445555555555555555555555555555555555555555555555555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.83 E-value=4 Score=37.09 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677788889999999999999999998888888888999999988888877776543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.55 E-value=20 Score=36.45 Aligned_cols=153 Identities=18% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.+...|+++.|...+..+ | -+.....+..+..+|-.++|++ +.++. .- .-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQ---RFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hh---hhhhhhhcCcHHHHH
Confidence 556677777777644333 2 2344555666666666665544 33321 11 223456677888777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
.+..++- +..- |..+|......+++..|.+++.++... ..|-.++...|+-+.-...-..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHH
Confidence 6655442 1222 677777778888888888888776442 2223333444444332222222
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
+-+....+.. -.++...|+++++.+.+.+.
T Consensus 718 ~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 2222222111 13456677777777766554
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.6 Score=40.73 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 4444444444444444444444444444444444444444444555555555555444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.83 E-value=2.3 Score=26.31 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+.+|..|...|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.81 E-value=26 Score=30.66 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
...+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678899999999999999999999999999999999999999999999999999999764
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.7 Score=23.50 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (595)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555566666655555555555444
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=83.32 E-value=2.4 Score=43.64 Aligned_cols=259 Identities=13% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HccCC-CCHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNP-HCAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKP-NFSQSLNN 373 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~~-~~~~~~~~ 373 (595)
......-+..+...|++..|...+.+.-. +.+ .........|.+....|++++|+..+... ..+.+ .....+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 34556667888888889888888887662 222 23455666788888888888988888641 11111 12345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc-CC
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN-EG 452 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~ 452 (595)
.+.++...|++-+|...+-..-.+-++......+.-.+...+...... .+.. ...+++......+-++..+-. ..
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~--~~~~~~~~l~GWl~La~i~~~~~~ 179 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQ--LRRASEPDLQGWLELALIYRQYQQ 179 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHh--hhcCCCHHHHHHHHHHHHHHhccC
Confidence 788888888887777665554433221111111111111111111111 1111 111111111111111111111 23
Q ss_pred CcHHHHHHHHHHHHHHHhhccc--cCC-CCC--CCCCCCCeEEEEe---cCCcccchHHHhhhhhhccc---CCCceEEE
Q 007634 453 HDDKLFEAHRDWGKRFMRLYSQ--YTS-WDN--TKDPERPLVIGYV---SPDYFTHSVSYFIEAPLVYH---DYQNYKVV 521 (595)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~--~~~~~~~l~igy~---s~d~~~h~~~~~~~~~~~~~---d~~~fe~~ 521 (595)
+..........|..+++..... .|. ... ...+..+-+|+.+ |+.|.... .-.-.+++..+ .....+|.
T Consensus 180 ~p~~l~~al~~Wq~~yP~HPA~~~lP~~l~~~~~~~~~~~~~IavLLPlsG~~a~~~-~aI~~G~~aA~~~~~~~~~~l~ 258 (536)
T PF04348_consen 180 DPAQLKQALNQWQQRYPNHPAAQYLPAALQQLLALQPAPPQRIAVLLPLSGRLARAG-QAIRDGFLAAYYADADSRPELR 258 (536)
T ss_dssp ------------------------------------------EEEEE--SSTTHHHH-HHHHHHHHHHH---TT--S-EE
T ss_pred CHHHHHHHHHHHHHhCcCCcccccCCHHHHHHHhhccCCccCEEEEeCCCCchhHHH-HHHHHHHHHhhcccccCCCceE
Confidence 3444555566777766543211 010 000 0112223355555 66666432 22445666666 46778999
Q ss_pred EeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCC
Q 007634 522 VYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI 567 (595)
Q Consensus 522 ~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~i 567 (595)
+|.+... ++..-+++.+...+ .| -|.++.-.++.+.+....+
T Consensus 259 ~~Dt~~~--~~~~~~~~a~~~ga-~~-ViGPL~k~~V~~l~~~~~~ 300 (536)
T PF04348_consen 259 FYDTNAD--SADALYQQAVADGA-DF-VIGPLLKSNVEALAQLPQL 300 (536)
T ss_dssp EEETTTS---HHHHHHHHHHTT---E-EE---SHHHHHHHHH-GG-
T ss_pred EecCCCC--CHHHHHHHHHHcCC-CE-EEcCCCHHHHHHHHhcCcc
Confidence 9986433 44445555443322 23 3568887777777777654
|
; PDB: 3CKM_A. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=82.57 E-value=37 Score=30.70 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALE-RP--MYAEAYCNMGVIYKN-RGDLESAIACYER 250 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~-~~--~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 250 (595)
.++.+..+.++|++.+.+..++++. +| -+.+-...++.+|.. .|....+...+..
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 4555555556666666666665554 22 233444444444432 3444444444443
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.28 E-value=72 Score=33.80 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (595)
.+....+.....+++.|.+++|.++...
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566678888899999999999999843
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.09 E-value=54 Score=32.21 Aligned_cols=64 Identities=17% Similarity=-0.000 Sum_probs=40.6
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 220 (595)
+......+...+..++|..|.+.+..+...-|... ..+..+ |..+...-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445566667778888888888888877523322 233333 33445667788888888877654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=81.44 E-value=4.5 Score=22.51 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~ 406 (595)
+.|...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444443333333
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.37 E-value=3.6 Score=38.48 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
.....+++.+-.+.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++..+...+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34455577777788888888887777777777778888888888888888888888888888888887766655555444
Q ss_pred HcC
Q 007634 414 DAG 416 (595)
Q Consensus 414 ~~g 416 (595)
...
T Consensus 355 ~~~ 357 (372)
T KOG0546|consen 355 KKK 357 (372)
T ss_pred HHH
Confidence 433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 595 | ||||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-32 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-14 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 7e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-18 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-11 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 6e-18 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 2e-17 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-16 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-13 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 9e-15 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-10 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 7e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-11 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 4e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 2e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-08 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 3e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 3e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 2e-06 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 7e-08 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 1e-06 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 8e-08 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 1e-06 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 8e-08 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 1e-06 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 8e-08 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 1e-06 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 2e-06 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 2e-06 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 3e-05 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 3e-04 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 5e-05 | ||
| 2xpi_A | 597 | Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 | 6e-05 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 3e-04 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 3e-04 |
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-129
Identities = 102/388 (26%), Positives = 175/388 (45%), Gaps = 14/388 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A+ F A + ++ N + + + A+K +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G +YK+ G+L EA E Y AL P + LA L G + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-------DME 118
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+Q Y AL+ +P +LG + L + + A CY KA +P +A A+ N+G +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ +G++ AI +E+ + + PNF A N+ L + ++ VA Y +AL
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-------IFDRAVAAYLRALS 231
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
+ ++A NL Y E D+AI Y A PH +A NL K++ ++ +A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+CY AL + P + SLNNL + QG ++ A + KA+ P +A A++NL + +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G + A+ Y++ ++I P +A N
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = 2e-98
Identities = 94/362 (25%), Positives = 171/362 (47%), Gaps = 14/362 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++I + + + ++++ EA+ G + + + A + + A++L P
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + G + A ++Y AL +P V +DLG LK G +
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------YCVRSDLGNLLKALGRLE 152
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G +
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
K + A+A Y R L++SPN + N+A + G I+ + Y++A+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-------LIDLAIDTYRRAIE 265
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
H+ DA NL A E A Y A P A++ NNL I +++ N+++AV
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
Y+ AL + P F+ + +NL V QGK+ A ++AI +PT+A+AY+N+G ++
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 415 AG 416
Sbjct: 386 MQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 1e-81
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 7/281 (2%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+L AG+ + + + + +P L ++ + + D + A +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL GD
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-------GD 116
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ V Y AL YN +LG + + + A Y A P+ A A +NLG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A + NL +Y + G I LAID Y + +++ P +A N
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 2e-69
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 14/295 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A L + A+ Y L+ + G L+ A + +A++ P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A ++ G ++ +G + A + KA++ DP++ +LG LK A
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARIFD 220
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ Y AL + P++A + NL VY E D A+ Y +A +P + +AYCN+
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
K +G + A CY L + P + NN+A + G +I + V Y+KAL
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-------NIEEAVRLYRKALE 333
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+A A NL + K A++ Y+ A +P A+A +N+G K+ +
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-65
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 7/249 (2%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
L + ++ A + + P + I+ L+ + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P A +N+ + G + + + +Y+ AL + D NL A
Sbjct: 62 QNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ A+ Y A +NP ++LG + K L++A CY A+ +PNF+ + +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
LG V+ QG++ A EKA+ +P + +AY NLG + ++A A+ AY + L + P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 434 DSRNAGQNR 442
+ N
Sbjct: 235 NHAVVHGNL 243
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 3e-83
Identities = 63/403 (15%), Positives = 133/403 (33%), Gaps = 24/403 (5%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD---SFSEAVK 110
+ + + F A Y+ L D+ EA + ++S K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
D + + + AE Y +++ + +L +L +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-------SDLLLCKADTLFVR 318
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
D + + L+IDP+ Y E + + P A +
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ Y + A + + + P F A A + G + +Q ++ Y
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-------EHDQAISAYT 431
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
A LG+ + ++ +A + + ++ + N LGV+ ++ ++
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 351 DKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A+ +Q AL + + ++ + NLG Y DAA + + + + + A
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ + ++Y LAI + L I P+ A A+
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 2e-73
Identities = 63/402 (15%), Positives = 120/402 (29%), Gaps = 27/402 (6%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L N R K + L + + ++ ++ +G + A + +
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYK 224
Query: 107 EAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
EA+ +D + A +L DE + +Y D ++ + L L
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS-------LYML 277
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ + + Y ++ + ++ L K P
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ Y G+ + P + + I + I+
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-------KIS 390
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ Y+ K+ + + A ++ + D AI Y A LG+
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397
+ N+ A E Q + ++ LN LGVV + M A + A+
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 398 -NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A + NLG YR AIDA Q L + + N
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 8e-72
Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 22/377 (5%)
Query: 46 FEGKDALSYANILRSRNKFVDALAL-YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+E D L ++L + ++ L L Y ++D+ + + + +
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ ++ +++ R ++ K L DP L + G
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + P A + +G+ Y + + A + K++ P +
Sbjct: 354 -------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ + G+ + AI+ Y + + + + LG +I
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-------NILL 459
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA-------FHFNPHCAEAC 337
Y + + + + LGV AI ++ A A
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
NLG Y+ D A++ L + N + + +VY + A + +++A
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
Query: 398 NPTYAEAYNNLGVLYRD 414
+P A + L +
Sbjct: 580 SPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 7e-66
Identities = 65/405 (16%), Positives = 119/405 (29%), Gaps = 18/405 (4%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A N+ L L K A G + + A +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + A G +Y + A E Y +AL D A + L L A
Sbjct: 196 IKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV------SNHLLTA 248
Query: 171 GNTQDGIQK--YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
D + K Y K D + + Y L + + Y + ++
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
R +A + L + P +L + G K KL
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-------YLI 361
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
+ + A +G+ Y + K A ++ + +P A +
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
D+A+ Y A + LG+ + G + A E ++ + A N L
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
GV+ + + AI+ ++ L + +++ + + N GH
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT--WANLGH 524
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 45/267 (16%), Positives = 76/267 (28%), Gaps = 16/267 (5%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE------ 259
QY A EK +A+ + +Y GD A + + +
Sbjct: 99 QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157
Query: 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316
+ + AL LG D + A Y G Y + F
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNF 216
Query: 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE---CYQMALSIKPNFSQSLNN 373
D A Y+ A + C EA + L + + + + Y F +SL
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
L + T AE +I ++ + + L+IDP
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 434 DSRNAGQNRLLAMNYINEGHDDKLFEA 460
+ + L + G +KL+
Sbjct: 337 YNLDVYPLHLAS--LHESGEKNKLYLI 361
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 4e-81
Identities = 41/400 (10%), Positives = 102/400 (25%), Gaps = 17/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A Q +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P+ A + + +A P + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-------VVAIASNGG 182
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P +A + + L + +
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE-------TVQRL 295
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + G + + A P A + +
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P ++ + G + ++ +A P A
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + ++ + Q + P A +
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 7e-78
Identities = 41/384 (10%), Positives = 95/384 (24%), Gaps = 14/384 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P+ A G + + +A P + + G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-------VVAIASNGGGKQALET 223
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A P A +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE-------TVQRLLPVLCQA 336
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A P A + G + + + +
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P ++ + + ++ +A P A + G
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGR 456
Query: 413 RDAGSISLAIDAYEQCLKIDPDSR 436
SI + + L +
Sbjct: 457 PALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 1e-76
Identities = 45/402 (11%), Positives = 101/402 (25%), Gaps = 21/402 (5%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGNVEAHIGKGICLQMQNMGRLAFD 103
L A R V+A+ + L V A Q +
Sbjct: 36 GQLLKIAK--RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
+A L PQ A + + +A P + +
Sbjct: 94 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASH 146
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ Q + +A + P A + G L L +A P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
A + G + ++ + + ++P +A + L +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQ 259
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
+ + +A A+ + + + A P A + G
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + + + + A + P ++ + + ++ +A P
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + G + ++ + Q + P+ A +
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 1e-71
Identities = 39/379 (10%), Positives = 99/379 (26%), Gaps = 14/379 (3%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
A L L+ D+G + +G ++ + + L P+ A
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
+ + +A P + + + Q + +A +
Sbjct: 83 QALETVQRLLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P A + L L +A P A + G + ++ +
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ ++P +A + L + + + +A A+ +
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASN 248
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G + + A P A + + + + + + A + P
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
++ + G + ++ +A P A + + ++ +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 427 QCLKIDPDSRNAGQNRLLA 445
Q + P+ A +
Sbjct: 369 QAHGLTPEQVVAIASNGGG 387
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-62
Identities = 36/363 (9%), Positives = 93/363 (25%), Gaps = 14/363 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
H ++ + +A + ++LD G + E
Sbjct: 5 HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P + + + Q + +A + P A +
Sbjct: 65 LNLTPEQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L L +A P A + + +++ + + ++P +A
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
+ L + + + +A A+ + G + +
Sbjct: 178 ASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A P A + G + + + + + A + P ++ +
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ +A P A + G + ++ + Q + P A +
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 443 LLA 445
Sbjct: 351 DGG 353
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 5e-59
Identities = 37/332 (11%), Positives = 86/332 (25%), Gaps = 14/332 (4%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
++ H E L A E L D L I T+++
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-----LLKIAKRGGVTAVEAVHAW 56
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ + L + P A + L L +A P A +
Sbjct: 57 RNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ ++ + + ++P +A + L + + +A
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-------ETVQALLPVLCQAH 167
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
A+ + G + + A P A + G + + + +
Sbjct: 168 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ A + P ++ + G + ++ +A P A + +
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + P A +
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-37
Identities = 32/234 (13%), Positives = 62/234 (26%), Gaps = 16/234 (6%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A G Q +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L PQ A + + +A P + + G
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASNGG 386
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A + G + + ++ + LA N + +AL LG + L+
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALD 494
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 6e-76
Identities = 63/326 (19%), Positives = 109/326 (33%), Gaps = 20/326 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+++ + + + Y+ P A + G G+ I
Sbjct: 38 NQEAQNQVTVSASEKGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEA 90
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG---VAYYKKALYYNWHY 299
A + + +P ++ N + K D + Y +A + N
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 300 ADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
D LGV + +F+ AI + A P N LG + D ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------YNNLG 409
AL I+P F +S NLG+ G A A++ N+
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDS 435
R A S+ + ++ D D
Sbjct: 331 AALRIALSLMDQPELFQAANLGDLDV 356
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 4e-73
Identities = 58/326 (17%), Positives = 110/326 (33%), Gaps = 20/326 (6%)
Query: 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
A + + E + + YY + P
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ G+ + + E A L+ P AEA+ +G+ + ++AI +RCL
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ PN A +A++ T+ K + N Y + N + G
Sbjct: 127 ELQPNNLKALMALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179
Query: 313 MLKFDMAIVFYEL----------AFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMA 360
+ + V + A H N + LGV++ ++A++ + A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L+++P N LG + + A E +A+ P + + NLG+ + G+
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLLAM 446
A+ + L + SRN Q A+
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAI 325
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 9e-58
Identities = 54/321 (16%), Positives = 101/321 (31%), Gaps = 27/321 (8%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A + E + +D G+ EA GI + A + +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TS 166
+L P N A + Y + +A E+ + +P YK + S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 167 LKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + + Y EA + LGV++ +++ A+ + A RP
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ +G N E A+ Y R L + P F ++ N+ I+ +L G +
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL-------GAYRE 299
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
V+ + AL + A + + I L+ P +A N
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA---LSLMDQPELFQAANL----- 351
Query: 345 KDRDNLDKAVECYQMALSIKP 365
++ A ++ P
Sbjct: 352 -------GDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 27/251 (10%)
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 255
M+++ A E + M +N+ + ++ Y
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ GD+ + + + A+ + A+A LG+ E
Sbjct: 62 FKDWPGAFEEGLKRLKE-------GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN 114
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
AIV + P+ +A L V Y + + A E + + P + + N
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEA------------YNNLGVLYRDAGSISLAID 423
+ +M + Y EA LGVL+ +G + AID
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 424 AYEQCLKIDPD 434
A+ L + P+
Sbjct: 235 AFNAALTVRPE 245
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 4e-40
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 4/218 (1%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ E A A E + MA + + + ++ Y +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+ + + I+F E A +P AEA LG+ + +N A+
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
Q L ++PN ++L L V YT A E ++ I NP Y N
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 452
+S + + A + G
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 8e-73
Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 22/292 (7%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ Y Y G+ +L A +E P EA+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+G+ AI + P +A++ T+ + N +A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLR 113
Query: 291 KALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
L Y + + + ++ A NP+ A+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+LGV+Y +N D A + A+ ++P+ +Q N LG + A + +A+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
NP Y N+ V Y + LA + + +
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 6e-61
Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 37/322 (11%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ + + +A +E V + EA G+ LA + + A
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------- 162
LDP++ H + + +E A S L + P Y+ D
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 163 -LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
++ + AL+++P+ A + +LGV+Y+ YD+A +A R
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + +G N + A+ Y R L ++P + NMA++ +++
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-------SQ 255
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ +A+Y + +
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW----------------------DFFR 293
Query: 342 VIYKDRDNLDKAVECYQMALSI 363
++ + D Y +
Sbjct: 294 MLLNVMNRPDLVELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 22/152 (14%), Positives = 44/152 (28%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
Y + E G+ NL +A ++ P ++ +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G+ K A + A +P + L V + + + + A+ + L P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 435 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G L A I++ + +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 48/232 (20%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + S + N++ + L LE + + + H G+ + N
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + AV+L P +A G + R EA ++Y++
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR------------------ 231
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
AL I+P Y YN+ V YS + QYD A +A
Sbjct: 232 -----------------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 220 ERPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ + R P+ +
Sbjct: 269 MQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNVEP 315
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 1e-71
Identities = 64/330 (19%), Positives = 115/330 (34%), Gaps = 33/330 (10%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 189
+ +A SA S + L L ++ L+ Y + + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
P + G+ + A+ +E A + P + EA+ +G AI+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA------- 302
RCL + P+ + A +A++ T+ Q + L Y YA
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 303 --MYNLGVAYGEM------LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDK 352
LG + + F + A +P + LGV++ DK
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
AV+C+ ALS++PN N LG + + A +A+ P Y + NLG+
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ G+ A++ + + L + SR
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 1e-66
Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 24/322 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +Y K + + G G+ + + + A++ DP + A
Sbjct: 44 LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG +E Q A+ + +P A + V + N A L
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 254 VSPNFEIAKNNM--AIALTDLGTKVKLEGDINQG------VAYYKKALYYNWHYADAM-- 303
+P + LG ++ G + + A+ + D
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
LGV + ++D A+ + A P+ N LG + + ++AV Y+ AL +
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-------- 415
+P + +S NLG+ G A E +A+ G + +
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340
Query: 416 ---GSISLAIDAYEQCLKIDPD 434
G A + L
Sbjct: 341 SMLGQSDAYGAADARDLSTLLT 362
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 1e-63
Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL--TDLGTS 166
++L P N A + + +E +A E L P+Y LG S
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 167 LKLAGNTQDG------IQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAA 218
++ G+ + + A+++DP LGV+++ +YD A+ C+ A
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 298
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G +
Sbjct: 299 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMS-----------------------ENIWS 334
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 335 TLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 333
+++A D L EM K D+ Y+ + F
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 334 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
G+ +L AV ++ A+ P ++ LG + A +
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
+ + P A L V + + A + L+ P + G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 453 HDDKLFEAHRDWGK 466
++ +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-69
Identities = 42/333 (12%), Positives = 102/333 (30%), Gaps = 24/333 (7%)
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
E+V +N + + + DP + L +L
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCYEKAALERP 222
+ ++ + + P +++ +G Y + + + A KA
Sbjct: 70 N-------KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
Y A+ G + + + A+A Y + + + + +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-------NS 175
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--------- 333
++ +AL M+ +GV + ++ A ++ A
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
NNLG + + +A++ ++ AL + P + + + +G ++++ G + A +
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
A+ + LG S A +
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 1e-68
Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 17/298 (5%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
V+ L + + + ++ DP +A EL + + K
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 219 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
P ++ +G Y G E A + + + A +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ +Q +A Y A M +G+ YG +A F+ A P
Sbjct: 140 ---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+ +GV+ A + + AL + LNNLG V K A
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
+ +A+ P A Y+ +G ++ G+ A+D + L + D + +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 2e-68
Identities = 50/324 (15%), Positives = 114/324 (35%), Gaps = 24/324 (7%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
++ N++ + ++ + S ++ DP +A + + E
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 193
HK + PS + +G + G+ + ++Y A ++ Y PA
Sbjct: 75 LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ G ++ ++D A+ Y AA +G+ Y + + A + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL---------YYNWHYADAMY 304
++P + + + G+ ++ AL + +
Sbjct: 188 IAPEDPFVMHEVGVVAFQN-------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
NLG ++ K+ A+ ++ A P A + +G I+ N + AV+ + AL ++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAA 388
+ + S+ LG + A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 5e-58
Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 15/270 (5%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
E++ +L + + + P +A
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+ + + P+ ++ + +G K Y KA
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK------NEHARRYLSKATTLEK 122
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
Y A G ++ + D A+ Y A C +G+ Y +N A +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI---------AANPTYAEAYNNL 408
ALSI P ++ +GVV G+ A + A+ + NNL
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + R + A+D + Q L + P + +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST 272
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-52
Identities = 43/282 (15%), Positives = 89/282 (31%), Gaps = 24/282 (8%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-NMGRLAFDSFSEAVKLD 112
+ L NK + L +++ N + G M + A S+A L+
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A G + E +A +Y A + +G L N
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP-------MLYIGLEYGLTNN 174
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------ALERPM 223
++ + + +AL I P + +GVV + ++ TA + A +
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ N+G + + A+ + + L + P + + + +G +
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-------NFE 287
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
V Y+ AL ++ LG + A + ++
Sbjct: 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 6e-49
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 16/251 (6%)
Query: 212 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
G Y K + + ++ + D + + P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 322
L +L +L K + + + +G Y + + A +
Sbjct: 61 VHIGTLVELNKANEL-------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A A G + D+A+ Y A + + +G+ Y +
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A +A++ P + +GV+ G A + L+ N
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 443 LLAMNYINEGH 453
N GH
Sbjct: 234 KWEPLLNNLGH 244
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 9e-43
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 20/238 (8%)
Query: 49 KDALSYANI----LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ +S+ + L +K A + A I G +++ A +
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ A +L + G+ Y A + +ALS P V+ ++G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVG 200
Query: 165 TSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYE 215
G + + + +AL+ + P NLG V +L +Y AL +
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+A + P A Y +G I+ G+ E+A+ + L + + + + +
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 1e-68
Identities = 55/372 (14%), Positives = 116/372 (31%), Gaps = 41/372 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ + L
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS + E + ++
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+ I + L++ A + + + A+ + A+ + E
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
A+ + +Y GD E +++ CL + + + + KL I
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------KLNKLIESAE 242
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGV 342
+ ++ A YE P AE + +
Sbjct: 243 ELIRDG----------------------RYTDATSKYESVMKTEPSVAEYTVRSKERICH 280
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ + +A+ L ++P+ +L + Y ++ D A + E A N
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340
Query: 403 EAYNNLGVLYRD 414
+ L R
Sbjct: 341 QIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 3e-66
Identities = 46/362 (12%), Positives = 100/362 (27%), Gaps = 45/362 (12%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H G G+L +A +H A+ DP I T G ++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSK 54
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + + + A G + + + D A ++K P E +
Sbjct: 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114
Query: 235 YK---------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
K + D +AI ++ L V + A G
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG------ 168
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + ++ K A +A Y + Y ++ ++++ + +
Sbjct: 169 -EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Query: 340 L------------GVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383
A Y+ + +P+ +S + ++ K
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
A + + + P A + Y AI YE + + + + +
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Query: 444 LA 445
A
Sbjct: 348 KA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 5e-45
Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 9/243 (3%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+K E + S A + A+ + +LE + E + C + R
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A A KL N A LY G + + L D +K V
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 160 -----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTA 210
L + L G D KY +K +P A + + +S+ + A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
+ + P A + Y + AI YE + N + + + A
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 271 DLG 273
L
Sbjct: 352 LLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ LG + A+ + A +P A ++ A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------- 411
+++K +F+ + G + QGK+D A + +K + +NP+ E L
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 412 -------YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEGHDD 455
D + AI ++ L++ + R + + D
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 25/133 (18%), Positives = 41/133 (30%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E LG L A+ + A+ P+ + V+ GK AA + K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
IA + A G L G + A D +++ LK +P + + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 454 DDKLFEAHRDWGK 466
D
Sbjct: 123 LRSQALDAFDGAD 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 23/169 (13%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAH------------IGKGICLQMQNMGRLAF 102
+ + +L+ L+ D + I L A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ +K +P A + + + + VEA + L +P A
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA------ 308
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
L D + + + IQ Y A + + + L L Q
Sbjct: 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-68
Identities = 55/403 (13%), Positives = 118/403 (29%), Gaps = 21/403 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + F +A+ Y+ +E D + C + ++A+++ P
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
++ A + G +A LS + + A + +L + +
Sbjct: 92 HSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGA--SIEPMLERNLNKQAMKVLNE 148
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------QYDTALGCYEKAALERPMYAE 226
+ + ++ P G+ S L YDTA A +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 227 AYCNM--GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ ++ K+ S ++ + N +A I ++
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-------NLLD 261
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
++++ + ++ L + + F++ A NP + G +Y
Sbjct: 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
+ A E +Q A S+ P L + QGK + + PT E
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380
Query: 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ D G AI Y+ +++ +
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-68
Identities = 53/457 (11%), Positives = 114/457 (24%), Gaps = 68/457 (14%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ + Y + S + LE + +A + + + A
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 106 SEAVKLDPQN------------------------ACAHTHCGILYKDEGRLVEAAESYHK 141
S + + + L +
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 142 ALSADPSYKPAAECLAIVLTD-----------------LGTSLKLAGNTQDGIQKYYEAL 184
L + A L K +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+ + A A G+ + A +++ P +Y + + ++ + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEF 295
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
+++ + ++P + + L D ++KA N
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQ-------DYKNAKEDFQKAQSLNPENVYPYI 348
Query: 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
L + KF + F+ P E I DR + D A++ Y +A ++
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 365 PNFSQSLNNLGVVYT----------------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +G + + K +AA +++ KA +P +A L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
L I AI+ +E + Q A
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 3e-68
Identities = 66/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
+ + + + + A AL L++ + L ++ + + L
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
A A + GI + + L++A ++++ P+ L +L N+
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN--------SYIFLALTLADKENS 292
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y +
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ +G + A + P A LTD G D + + Y A
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-------DFDTAIKQYDIAK 405
Query: 294 YYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEAC 337
+G G+ KF+ AI A +P +A
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + + +D+A+E ++ + + + L A A I+K + A
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT---------FAEAAKIQKRLRA 516
Query: 398 NPTYAEAYNNLGVLYRDAGSI 418
+P + YR G +
Sbjct: 517 DPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 4e-58
Identities = 58/394 (14%), Positives = 116/394 (29%), Gaps = 39/394 (9%)
Query: 63 KFVDALALYEIVLEKD----SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
++ + +G A + A++LDP
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
+++ Y G L + E KAL P + A A L GN D +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-------GNFTDAM- 113
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
L ++ + A E A+ + ++ + +
Sbjct: 114 FDLSVLSLNGDFDGASIEP---MLERNLNKQAMKVLNENL------SKDEGRGSQVLPSN 164
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV-----------------KLEGD 281
L S ++ L VS + + A AL + K
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ ++ + A A+ G+ + A V + + + +P + L
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLA 283
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
+ D++N + + +Q A+ + P + + + G +Y + A E +KA + NP
Sbjct: 284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
Y L L G + + + + P
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 6e-58
Identities = 53/355 (14%), Positives = 114/355 (32%), Gaps = 47/355 (13%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G + + PS + A A+ L + G A N + I+ Y A+++DP+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
Y N+ Y + + KA +P +++A ++ G+ A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Query: 250 RCLAVSPNFEIA-------------------------KNNMAIALTDLGT---------- 274
L+++ +F+ A + + L +
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 275 -----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAF 327
V + + A AL + D Y + + + +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ A A G+ + ++NL A Q ++++ P S L + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ +KA+ NP Y Y + G +Y A + +++ ++P++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 315 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+P A N G + N ++A++ YQ A+ + PN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+N+ Y G ++ E KA+ P +++A G+ + A+ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 480
++ D A +L N + +D G+ L S +
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 280 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
G G + YA + N G + F+ AI +Y+ A +P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
+N+ Y +L+K +E AL IKP+ S++L G A + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 396 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 430
+ N + A + S++ ++ L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 431 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ + ++ + A+ +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
Query: 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD 103
K S KF A+ L E D + +A IG A +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
F ++ L + + ++ + + +
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKME 525
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 2e-67
Identities = 55/319 (17%), Positives = 96/319 (30%), Gaps = 9/319 (2%)
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ D + + + A+ + A L A M + + +P EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
LG + + +A Q A P LG G+ +AAA +A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
P L R D ++ ++ + +
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRAL-DVLSAQVRAAVAQGVGAVEPFAFLSE--DASAAEQ 177
Query: 458 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 517
R + S + PL +G+VS + H A +
Sbjct: 178 LACARTRAQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQ 235
Query: 518 YKVVVYS-AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGH 576
+ ++ A D T+R R + + D+ + A +R ID+L +L G
Sbjct: 236 PDLQMHLFATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGW 292
Query: 577 TANNKLGMMACQPAPVQVC 595
+ + A +PAPVQV
Sbjct: 293 GGGGRPEVFALRPAPVQVN 311
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-31
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 7/150 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
A+ P + L + G+T G L + P
Sbjct: 3 ADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ A LG V ++ A ++A+ P + +G ++ G E+A A Y
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R + P + L L+
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 7/201 (3%)
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ + + + A++ P A+ L + ++ P + EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+G + + A ++ +P + AL D G A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------GQAEAAAAA 113
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
Y +A L + + V A + +D
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDAS 173
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
++ A +I +
Sbjct: 174 AAEQLACARTRAQAIAASVRP 194
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-26
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 9/156 (5%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
AV+ PQ+ A G + + L+ P + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L V + +A P + LG + Q + A Y
Sbjct: 63 LGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251
+A P + + D + +
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 9e-20
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 7/145 (4%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
L + + A + + + L P + A G +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ R EAA +A A P + + LG +L+ AG + Y A +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTA 210
+ P L L +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 20/111 (18%), Positives = 30/111 (27%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A+ + L G+ EA G Q A +A P
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++ G +D G+ AA +Y +A P L L
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 10/99 (10%), Positives = 28/99 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
+ ++ + +A L + + + + G L+ A +++ A +L P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ + + +A A
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 8e-67
Identities = 62/418 (14%), Positives = 129/418 (30%), Gaps = 38/418 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ ++L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS E + ++ +
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+G+ I + L++ A + + + A+ + A+ + E
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG- 285
A+ + +Y GD E +++ CL + + + + E I G
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 286 ----VAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+ Y+ + + + + + + K AI P A
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ Y + D+A++ Y+ A N Q L + + +
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSRNAGQNRLLA---MNYINE 451
N E I AY + L+ PD+ + + A I
Sbjct: 393 NAKKQE-----------------IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 1e-58
Identities = 52/387 (13%), Positives = 106/387 (27%), Gaps = 49/387 (12%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
+ +VE H+ G L A F AV DP N A+ ++ G+
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194
A K + + A +L G + + + LK +P
Sbjct: 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQ-------GKLDEAEDDFKKVLKSNPSENEEK 131
Query: 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
L + + + + GD +AIA ++ L V
Sbjct: 132 EAQS-------------------QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+ A G+ + ++ K A +A Y + Y ++
Sbjct: 173 CVWDAELRELRAECFIKE-------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK------------DRDNLDKAVECYQMALS 362
++++ + + + K A Y+ +
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 363 IKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
+P+ +S + ++ K A + + + P A + Y
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLA 445
AI YE + + + + + A
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 1e-48
Identities = 46/333 (13%), Positives = 99/333 (29%), Gaps = 56/333 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
H G+ E ++ K L +LG L AG D +
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHL------------------ELGKKLLAAGQLADAL 46
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
+++ A+ DP AYY V+ + + AL K + + A G +
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 297
+G L+ A +++ L +P+ K ++
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEA--------------------------QSQLIKS 140
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ + + + AI F + AE + KA+
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---- 413
+ A +K + +++ + +Y G + + + + + + + + + + +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 414 --------DAGSISLAIDAYEQCLKIDPDSRNA 438
G + A YE +K +P
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 2e-45
Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 33/268 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +++ GV Y ++ E + +G G L A++ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQFH 50
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ P+ IA A + G + K + + A G
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAM-------GKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACN---------------NLGVIYKDRDNLDKAV 354
+ K D A ++ NP E + + + A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
L + ++ + +G+ A ++ A EA+ + LY
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNR 442
G L++ +CLK+D D + +
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 8e-45
Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 71/411 (17%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++Y A + + K AL V++ A + +G L Q A D F
Sbjct: 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117
Query: 106 SEAVKLDPQNACAHTHCGILYK---------------DEGRLVEAAESYHKALSADPSYK 150
+ +K +P L K G A K L
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
E A G + I A K+ A+Y + +Y +L ++ +
Sbjct: 178 ELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSPNF 258
L + + + + + K G A + YE + P+
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290
Query: 259 E----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+K + + + + + L +A+ + AY
Sbjct: 291 AEYTVRSKERICHCFSKDE-------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------------DNLDKAVECY 357
+D AI YE A N + + L + + ++ Y
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403
Query: 358 -QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
++AL P+ Q+ + AA K + ++P + +++
Sbjct: 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAA-----KEVLSDPEMRKKFDD 449
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 4e-44
Identities = 60/319 (18%), Positives = 95/319 (29%), Gaps = 20/319 (6%)
Query: 22 FLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN 81
F K +S P + A +K E + S A + A+A + +LE +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E + C + R A A KL N A LY G + +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236
Query: 142 ALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---- 192
L D +K V L + L G D KY +K +P A
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ + +S+ + A+ + P A + Y + AI YE
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV-----------AYYKKALYYNWHYAD 301
+ N + + + A L K + GV AY K AL ++
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416
Query: 302 AMYNLGVAYGEMLKFDMAI 320
A + + A
Sbjct: 417 NEEEKKKAEKKFIDIAAAK 435
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 33/244 (13%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M+ + + GV ++A E + L G +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA-------GQL 42
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
++ + A+ + A Y + M K A+ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFS---------------QSLNNLGVVYTVQGKMDAA 387
+ + LD+A + ++ L P+ + Q L + + G AA
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
++K + AE + G AI + K+ D+ A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 448 YINE 451
+ +
Sbjct: 223 QLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-25
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ ++ GV G + ++ E LG L A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418
A+ P+ + V+ GK AA + K I + A G L G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
A D +++ LK +P + + + G
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 223 bits (569), Expect = 7e-66
Identities = 63/421 (14%), Positives = 124/421 (29%), Gaps = 38/421 (9%)
Query: 55 ANILRSRNKFVDALALYE---IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A+ KF DA+ + + + ++E + + + Q + + F A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 112 DPQNACAHTHCGIL-------------YKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ + + + +Y ++ AD L
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199
Query: 159 VLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + K A ++ + K E K+ A + + G+ A
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+KA P +Y M +I +R D +++ L + N + L
Sbjct: 260 IKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Q + KA + L KFD + A P
Sbjct: 319 -------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---------VQGKM 384
E N I D+++ DKA++ Y +A+ ++ + +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
A ++EKA +P +A L + I AI +E+ + Q
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491
Query: 445 A 445
A
Sbjct: 492 A 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 7e-65
Identities = 57/418 (13%), Positives = 115/418 (27%), Gaps = 38/418 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE-AVKLDP 113
+ S + + LE + + + + A S ++ D
Sbjct: 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105
Query: 114 QNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-- 169
+A + + +L E A + + S+
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Query: 170 ----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------------LMQYDTALGC 213
+ Y E+ + D NL E ++ L
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + A + + G+ + D A ++ + + P + MA+ + D
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRN 284
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
D + Y+ KAL + + + Y+ G + +D A ++ A +P
Sbjct: 285 -------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
L + + D + A P + N + T + D A + +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397
Query: 394 AIAANPTYAEAYNNLGVLYRDA---------GSISLAIDAYEQCLKIDPDSRNAGQNR 442
AI Y + L A + A + E+ K+DP S A
Sbjct: 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 4e-64
Identities = 53/398 (13%), Positives = 116/398 (29%), Gaps = 33/398 (8%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF----- 105
L+ + + + KF D E + + K L F F
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176
Query: 106 ----SEAVKLDPQNACA-----HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
E+ + D + K + +AA + + L + + E L
Sbjct: 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L G L + + +A+++ P +Y + ++ ++ ++K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDK 295
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + Y + G + + + A +++ + P +A
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN--- 352
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+ + +A + + FD A+ Y+LA
Sbjct: 353 ----KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Query: 337 CNNLGVIY---------KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ + +N +A + A + P Q+ L + Q +D A
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ E++ T E + + +A + I +
Sbjct: 469 ITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-61
Identities = 51/411 (12%), Positives = 118/411 (28%), Gaps = 24/411 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N K+ DA+ Y LE + + C + + ++A++L P
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + G+ +A LS + + A+ + + + + +
Sbjct: 72 YSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDAS---IEPMLERNLNKQAMSKLK 127
Query: 175 DGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALGCYEKAALER 221
+ A + + + + + Y+++
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 222 PMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
N+ K A +E L + E K +AI+L G
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
L+ D KKA+ ++ + + + +++ A + + +
Sbjct: 248 FLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
+ G + N D+A + + A + P L + + K D + +A
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
P E N + D A+ Y+ ++++ +
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 4e-56
Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 45/368 (12%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIG------------KGICLQMQNMGRLAFDSFSE 107
K A Y+ E D + + + D +E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
KL + A + H GI + + A E KA+ P + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------SYIYMALIM 280
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
++ + + +ALK+D + + YY+ G + L YD A ++KA P
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
Y + + + + P N A LTD D ++ +
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-------DFDKALK 393
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEML---------KFDMAIVFYELAFHFNPHCAEACN 338
Y A+ + G+ F A E A +P +A
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
L + ++++D+A+ ++ + + + L + A A +++ I ++
Sbjct: 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---------FAEAAKVQQRIRSD 504
Query: 399 PTYAEAYN 406
P A+
Sbjct: 505 PVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-50
Identities = 40/351 (11%), Positives = 100/351 (28%), Gaps = 30/351 (8%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ A A G + + +A + Y+ AL + ++L G+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------PVFYSNLSACYVSVGD 54
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYC 229
+ ++ +AL++ P Y+ L ++ A+ +L E
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL------EGDIN 283
+ + L+ + A + V
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEML------------KFDMAIVFYELAFHFNP 331
A Y ++ + + + NL E F+ +
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
A + + G+ +++ A E + A+ + P S + ++ +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYF 293
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+KA+ + + Y + G + + A +++ ++DP++
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ YA A + G + + AI Y L + + + +N++ +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE---LAFHFNPHCAEA 336
GD+ + V KAL Y+ + A + KF A+ L FN E
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------SLNNLGVVYTVQGK 383
+ + L + A + S + K
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-----IDPDSRNA 438
+ +++ A+ +NL R S A +++ + + +D ++ +
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLY--KRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 439 GQNRLLAMNYINEG 452
LA++ + G
Sbjct: 231 KLKEKLAISLEHTG 244
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-64
Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 44/283 (15%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +H + P + ++ G+ + + + +A++ + A
Sbjct: 3 SSHHHHHHSSGLVPR---GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y N + S + + + AL Y+KA A AY G +Y + + A +E+ L
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
D Y LG ++
Sbjct: 120 AGME-----------------------------------------NGDLFYMLGTVLVKL 138
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373
+ +A+ + + A N + EA G+ + LD+A+ + P + + N
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198
Query: 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
GV Y + + A EM++KAI P + A + +L
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-62
Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 11/248 (4%)
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 263
++ + ++ P + G R GD E A + + + + I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A L+ + ++ + +A+Y KAL + A A Y G Y + A +
Sbjct: 62 NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
E A + LG + + A+ Q A+ + N +++ G+ +G
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+D A +P +A+A+ N GV Y + A++ ++ + I PD A +
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 444 LAMNYINE 451
L ++ +
Sbjct: 235 LLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 8e-57
Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 52/287 (18%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCG----ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+ + L P+ + + G + G +AAE++ KA+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------- 56
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI + L + + Y +AL++D A AYY G VY Y A +EK
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A + + +G + + A+ +R + ++ N
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------------------- 157
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A + G+ D A+ + +P A+A
Sbjct: 158 ----------------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
N GV Y ++N +KA+E A+ I+P+ +L+ ++
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 3e-50
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 3/202 (1%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ S+ + + P + + GD + + KA+ N A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDA 57
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
N + + + A+ FY+ A + A A G +Y ++ +A + ++ A
Sbjct: 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Query: 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
L LG V + A +++A+ N EA G+ + G +
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
A+ + + DP +A N
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNA 199
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 3e-50
Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ A + +E++ + +I L N A + +A+
Sbjct: 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+LD A A+ G +Y + EA + + KAL A + LGT L
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVK 137
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ + A++++ + A + G+ + D AL + + P +A+A+
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
N GV Y + + E A+ ++ + + P+ +A + +
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 6e-37
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 7/186 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
AN+L S N+ ALA Y+ LE DS A+ G G ++ M + A D F +A++ +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N G + + A +A+ + + G L G
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------TEARFQFGMCLANEGMLD 176
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + ++ + DP +A A+YN GV Y+ + AL +KA +P + A ++
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236
Query: 235 YKNRGD 240
+
Sbjct: 237 GHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-26
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + + +A ++E L N + G L +LA AV+L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ A G+ +EG L EA + DP + A + N +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NRE 210
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
++ +A+ I P + A + ++ +
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 5e-63
Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ + +++ G+V D K R +AY +G+ Y RG+ E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ L + P+ A +A+ + Y+KAL + A + N
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEM-------EPKLADEEYRKALASDSRNARVLNN 110
Query: 306 LGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
G E +++ A P + NLG++ +A E ++ +L +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
N + + + + A + + A + L + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 424 AYEQCLKIDPDSRNAGQ 440
Q ++ P S +
Sbjct: 231 YGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 6e-55
Identities = 43/261 (16%), Positives = 77/261 (29%), Gaps = 19/261 (7%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + H G++ + ++ K LG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEA-------RDAYIQLGLGYLQR 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
GNT+ +AL+IDP A A+ L VV+ M+ A Y KA A N
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110
Query: 231 MGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
G + E A + P N+ + + Q Y
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-------KKPAQAKEY 163
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
++K+L N + + + ++ A +Y+L A + + K +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223
Query: 349 NLDKAVECYQMALSIKPNFSQ 369
+ D A + P +
Sbjct: 224 DRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-42
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + L G GD N K DA LG+ Y + + A V
Sbjct: 8 HHHSSGLVPRG---SHMGDQN-----PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A +P A+A L V+++ A E Y+ AL+ ++ LNN G Q
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119
Query: 383 KMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + A + + +A P + + NLG++ + A + +E+ L+++ + +
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQY 475
+A E + A R + F + Q
Sbjct: 180 E--MADLLYKER---EYVPA-RQYYDLFAQGGGQN 208
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 9/211 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
R A LE D + +AH + Q + +LA + + +A+ D +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGN 172
NA + G ++ R EA + +A P + V +LG
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKK 156
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ + ++L+++ + + + + +Y A Y+ A A +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
+ K D ++A + + + P +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 16/103 (15%), Positives = 25/103 (24%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K A +E L + + L + A + + Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
NA + L K AA + P E A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 3e-62
Identities = 40/400 (10%), Positives = 99/400 (24%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A G + + +A P A +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASHDG 336
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A + L + +
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-------ETVQRL 448
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ + A+ + + + A P A + +
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + A + P+ ++ + G + ++ +A P A
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + A + +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 218 bits (556), Expect = 3e-61
Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 18/400 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A + + +A P + + G
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASHGG 302
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
A + G + ++ + + ++P+ +A+ G K L + +
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASNGGKQAL-ETVQRL 414
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ +A A+ + + + P A + +
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQ 474
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ + + + A + P+ ++ + + ++ +A P A
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ G + ++ + Q + PD A +
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 2e-60
Identities = 39/396 (9%), Positives = 97/396 (24%), Gaps = 14/396 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A++ ++ L + V A Q + +
Sbjct: 397 VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH 456
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
L P A + + + +A P + + +
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ-------VVAIASNIGGKQA 509
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
Q + +A + P A + G L L +A P A
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 569
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G + ++ + + ++ +A + L T +L +
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRL-------LPVL 622
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
+A A+ + + + A P A + G + +
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ + + A + ++ + + ++ +A P A + G
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + P A + +
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 2e-60
Identities = 42/406 (10%), Positives = 100/406 (24%), Gaps = 22/406 (5%)
Query: 45 GFEGKDALSYANILRSRNKFVDAL-----ALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + A R ++A+ AL L V A Q +
Sbjct: 152 QLDTGQLVKIAK--RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+A L P A + + +A P +
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ-------VVA 262
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ + Q + +A + P A + G L L +A
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
P A + + ++ + + ++P+ +A + L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL------- 375
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + + +A A+ + G + + A P A +
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIAS 434
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
+ + + + + + P ++ + + ++ +A P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + + ++ + Q + PD A +
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 1e-59
Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 15/380 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
DA L L+ D+G + +G M+ + + L P A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + +A P+ + + + Q + +A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ P A + L L +A P A + G + ++ +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ ++P+ +A + L T +L + +A A+ +
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRL-------LPVLCQAHGLTPDQVVAIAS 367
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G + + A P A + G + + + + + A + P
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTP 426
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ ++ + + ++ + P A + + ++ +
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 426 EQCLKIDPDSRNAGQNRLLA 445
Q + PD A + +
Sbjct: 487 CQAHGLTPDQVVAIASNIGG 506
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 2e-57
Identities = 37/386 (9%), Positives = 94/386 (24%), Gaps = 14/386 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A + + +A P + + G +
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ-------VVAIASNGGGKQALET 546
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A + A +
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P +A + L + + + +A
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TVQRLLPVLCQA 659
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + G + + A A + + + + +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + P+ ++ + G + ++ +A P A +
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNA 438
+ ++ + Q + A
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 194 bits (493), Expect = 9e-53
Identities = 36/391 (9%), Positives = 92/391 (23%), Gaps = 14/391 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A Q + +A L P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A P A + G + Q
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQ 582
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + A + L L +A P A +
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHG 695
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + + + A P A + G + + + + +
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
A + P ++ + + ++ + A + +
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQA 815
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
++ + Q + D A + +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 37/380 (9%), Positives = 88/380 (23%), Gaps = 14/380 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A G Q + +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A A L T Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQ 616
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + P A + L L +A P A + G
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+ ++ + + ++ +A + L + + + +A
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHG 729
Query: 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354
A+ + G + + A P A + + + + + +
Sbjct: 730 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ ++ + + ++ +A A + +
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849
Query: 415 AGSISLAIDAYEQCLKIDPD 434
++ + Q + PD
Sbjct: 850 LETVQRLLPVLCQDHGLTPD 869
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 36/347 (10%), Positives = 88/347 (25%), Gaps = 10/347 (2%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
++ + P+ R +EA + L P + + I
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
G + L + P A + L L +A
Sbjct: 162 --AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
P A + + ++ + + + P+ +A + L
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE----- 274
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ + + +A A+ + G + + A P A
Sbjct: 275 --TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 332
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
+ + + + + + A + P+ ++ + G + ++ +A
Sbjct: 333 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 392
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
P A + G + ++ + Q + PD A +
Sbjct: 393 PDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 172 bits (436), Expect = 2e-45
Identities = 32/390 (8%), Positives = 90/390 (23%), Gaps = 14/390 (3%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S ++ L + V A G Q + +A L
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A + + +A P+ + + +
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALET 648
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A A +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ ++ + + ++P+ +A + L + + + +A
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQA 761
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + + + A + + + + +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQR 821
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ A + + ++ + + ++ + P A +
Sbjct: 822 LLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGK 881
Query: 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ ++ + Q + D A +
Sbjct: 882 QALETVQRLLPVLCQDHGLTLDQVVAIASN 911
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 6e-44
Identities = 36/329 (10%), Positives = 89/329 (27%), Gaps = 9/329 (2%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ H H L + L A +Y ++A P + V + L
Sbjct: 83 GHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHED--IVGVGKQWSGARALEALL 140
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
D + L++D G V + + + P A +
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ ++ + + ++P +A + L + + + +A
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE-------TMQRLLPVLCQAH 253
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
A+ + + + A P A + G + + + +
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313
Query: 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ A + P+ ++ + + ++ +A P A + G +
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
Query: 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
++ + Q + PD A +
Sbjct: 374 ALETVQRLLPVLCQAHGLTPDQVVAIASN 402
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 1e-36
Identities = 32/338 (9%), Positives = 80/338 (23%), Gaps = 13/338 (3%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
Q + A + + G + E K S + A + +
Sbjct: 41 QPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAA 100
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Y + P + AL P+ + +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 233 VIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + A+ L +P +A + L + + +
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALE-------TVQRLLP 213
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
+A A+ + + + A P A + +
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ + + + A + P+ ++ + G + ++ +A P A +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ ++ + Q + PD A +
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 6e-35
Identities = 46/430 (10%), Positives = 105/430 (24%), Gaps = 48/430 (11%)
Query: 45 GFEGKDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLA 101
G ++ A+ ++ L + V A G Q +
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Query: 102 FDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
+A L + A + + +A P + +
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIA 739
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT------------ 209
G + Q + +A + P A + L
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799
Query: 210 ---------------ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
AL ++ + V + + A+ +R L V
Sbjct: 800 LAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPV 859
Query: 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 314
+ +A+ + + + + + A+ + G +
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALE 918
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ P A + + + + + + + PN ++ +
Sbjct: 919 TVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Query: 375 GVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G ++ + A + A+AA + A LG A+DA ++ L P
Sbjct: 979 GGKQALE-SIVAQLSRPDPALAALTNDHLVALACLGGRP--------AMDAVKKGLPHAP 1029
Query: 434 DSRNAGQNRL 443
+ R+
Sbjct: 1030 ELIRRVNRRI 1039
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-62
Identities = 77/353 (21%), Positives = 143/353 (40%), Gaps = 20/353 (5%)
Query: 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311
P + NN+A + G +I + V Y+KAL +A A NL
Sbjct: 2 PGSCPTHADSLNNLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
+ K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+NL ++ G + A A+ P + +AY NL + + + ++ + I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 432 DPDSRNAGQN----RLLAMNYINEGHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDP 484
D + +M Y K + K + Y + K
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234
Query: 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAKTIRFREKVMKK 543
+ L +GYVS D+ H S+ +++ H+ ++V Y+ + ++ +
Sbjct: 235 DGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA--- 291
Query: 544 GGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVC 595
+ D+ I K A + +D I ILV + G+T + + A +PAP+Q
Sbjct: 292 -NHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAM 343
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 182 bits (462), Expect = 1e-49
Identities = 77/478 (16%), Positives = 140/478 (29%), Gaps = 36/478 (7%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
P +A + + + +++G + EA Y KAL P + A LA VL G
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG------ 57
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N
Sbjct: 58 -KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ I+K+ G++ AIA Y L + P+F A N+A L + D K
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-------CDWTDYDERMK 169
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
K + + L + + A
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI----------- 217
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ S +G V + G + M NP E +
Sbjct: 218 -NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALS 276
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ + + N + + I+ + + +R
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALR 336
Query: 471 LYSQYTSWDNTKDPERPLVIGYVSPDYFTH---SVSYFIEAPLVYHD-YQNYKVVVYSAV 526
W L + Y+ D T + E + +
Sbjct: 337 PAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF-----IGDHA 391
Query: 527 VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 584
+ G I+ + ++ + A + +V++ +
Sbjct: 392 NMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS 449
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 2e-21
Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A AH++ ++KD G + EA SY AL P + +L L++ +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------PDAYCNLAHCLQIVCDWT 162
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
D ++ + + I L V+ + KA ER
Sbjct: 163 DYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-61
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 15/272 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL G
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG----- 125
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAE 335
+ + L +A ++ + V +E +
Sbjct: 126 --RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
LG I ++ +++ S+ + S++ LG Y G +D+A + + A+
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
A N + + G + +Q
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 4e-57
Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 12/277 (4%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
++ + E L + D A +L + G G
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDER-------AQLLYERGVLYDSLGL 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ +AL I P + LG+ ++ +D A ++ P Y A+ N G
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G + A PN + +A L K E +++K+
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK----QHFEKS 174
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
W + + LG E + H +E LG Y +LD
Sbjct: 175 DKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A +++A++ + + ++ G+
Sbjct: 234 ATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 6e-54
Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 15/268 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
L V +Q + L E+ AL A+ GV+Y + G A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
+ + LA+ P+ N + I LT G + + + L + Y A N
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA---VECYQMALSI 363
G+A + +A + +P+ L + + D + ++ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177
Query: 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
+ ++ LG + Q M+ + +E LG Y G + A
Sbjct: 178 QWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 424 AYEQCLKIDPDSRNAGQNRLLAMNYINE 451
++ + + + + LL ++ + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-46
Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 50/314 (15%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ + A L+ + LA E +L D + +G+ + LA +
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
FS+A+ + P + GI G A E++
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------- 102
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
L++DP Y A+ N G+ + A + P
Sbjct: 103 ------------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+ + + + + A ++ S + N + L ++ + +E
Sbjct: 145 PFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK-- 201
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
A H ++ + LG Y + D A ++LA N H +
Sbjct: 202 --ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 259
Query: 345 KDRDNLDKAVECYQ 358
+
Sbjct: 260 SLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 6/200 (3%)
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320
+A+ L + E + + + A +Y GV Y + +A
Sbjct: 7 KSEVLAVPLQPTL---QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
+ A P E N LG+ N D A E + L + P ++ + N G+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
G+ A + + +P L + + A + +Q + +
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
Query: 441 NRLLAMNYINEGHDDKLFEA 460
+ I+E +
Sbjct: 183 IVEFYLGNISE--QTLMERL 200
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 11/92 (11%), Positives = 20/92 (21%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
Y + + A E + G A F AV
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
+ N H + + G+ + +
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-61
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 9/261 (3%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
A G + + Q+D A+ Y KA N +G+ E+AI+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ ++ + +G + + KK + Y +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-------NAYHKLGDLKKTIEYYQKSLTE-HRTA 112
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
++ + + E + NP AE G Y + + AV+ Y + P
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
++ +N A KAI +P + AY + A++ +
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 428 CLKIDPDSRNAGQNRLLAMNY 448
D + N R + Y
Sbjct: 233 ARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 3e-54
Identities = 38/298 (12%), Positives = 74/298 (24%), Gaps = 50/298 (16%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A G + + EA E Y+KA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT---------------------- 39
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
N E +Y+TA+ A + Y +
Sbjct: 40 --------------------YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
+ G+ + ++ + + A LT L + + + +
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL-------RNAEKELKKAEAE 131
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
Y N A+ G Y + A+ Y P A +N + +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ A+ PNF ++ + +A E ++ A + + +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 8e-46
Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 16/255 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N +F +A+ Y E ++ + + A + ++AV+ +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + G K + A +LT L N +
Sbjct: 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLR-------NAE 122
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++K ++P A G Y + A+ Y + P A Y N
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
AIA + + PNF A A A + + + A
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-------KEYASALETLDAART 235
Query: 295 YNWHYADAMYNLGVA 309
+ + +
Sbjct: 236 KDAEVNNGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-41
Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 8/219 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + ++ A++ +E+ + + ++ +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H + + + +P A G +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWP 156
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ ++ Y E +K P A Y N ++LM + A+ KA + P + AY
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ SA+ + + I
Sbjct: 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 8/188 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ L + +E ++ H L ++P+
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G Y + A ++Y + + P A L L +
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFP 190
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ I +A++ DP++ AY + +Y +AL + A + +
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 235 YKNRGDLE 242
+
Sbjct: 251 QLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
+ + G + + D A E KA + NN + G AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 483
++ + R + + I + D K+ + Y + + T D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-59
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 21/268 (7%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 219
L N + I+ + + + Y V Y EL +YD A Y
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ + G I +G AI Y+ + + + G
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ + Y +K + Y LG AY ++ A + P+
Sbjct: 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 340 LGVIYKDRDNLDK---AVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAA 388
+D K A Y+ + + K ++ + YT+ A
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ +A +PT +A + L +
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-56
Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 21/275 (7%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 249
+ + Y A+ + K ++ Y V Y + A Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
+ + L G + + Y+ A+ + D +G
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKG-------QDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ F +AI + E + LG Y KA + L +KPN
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 370 SLNNLGVVYTVQG---KMDAAAEMIEKAI--------AANPTYAEAYNNLGVLYRDAGSI 418
Q K A EK I EA + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A A++ L +DP ++ A + + + + H
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 4e-53
Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 40/306 (13%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA---AE 137
N + L N A + F++ + + + Y + + A E
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+Y ++A + + G L G IQ+Y A+ D Y +
Sbjct: 62 TYFSKVNATKAK-------SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G + + A+ EK + + +G Y + A + + + L + PN
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317
I A A K YY+K +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAK----PYYEKLIEVCAPGGAK--------------- 215
Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
+ EA + Y + KA ++ L++ P ++++ L +
Sbjct: 216 -----------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 378 YTVQGK 383
Sbjct: 265 LEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-50
Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 7/224 (3%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M + + AI + + A N N A+ +L + DI
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
Y + + G + + +AI Y+ A + + +G
Sbjct: 61 ET----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+ ++ N A++ + + + LG Y + A K + P
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Query: 403 EAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSRNAGQNRL 443
Y + LA YE+ +++ ++ L
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 5e-38
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)
Query: 55 ANILRSRNKFVDALA---LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A K+ A Y + G L + LA + AV
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + G + ++G A + K + + V +LG +
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------PKVFYELGQAYYYNK 156
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA--------ALE 220
+ + L++ P+ Y + + A YEK A
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ EA + Y D A A ++ LA+ P + A + + + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 4/157 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ ++ F A+ E + + + + G A SF + ++L P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 115 NACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLA 170
+ + + A Y K + + L + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
+ + L +DP A L + +
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 2e-59
Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LGV L +YD AL +E+A E P EA + G + A+ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 253 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 308
A +P + ++ A L + + +G + Q ++ K A N YA G+
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
Y + + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 127 VYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++GK + AA +
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-49
Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 12/222 (5%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ + G+ L A F A+K +PQ+ A G + A E+
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 141 KALSADPSYKPAAECLAIVLTDLG----TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
++ P Y L+ L + G + + +A +++P YAP +
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
G+VY+ L + D A ++ AL E + +Y + G L+ A+A Y + L +P
Sbjct: 124 RGLVYALLGERDKAEASLKQ-ALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+ A AL G + +++ H
Sbjct: 183 KDLDLRVRYASALLLK-------GKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-37
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
LGV + ++D A+ +E A NP EA L ++ A+E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 360 ALSIKPNFSQSLNNLGVVYT-----------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++ P + L Y +G ++ A +++ A NP YA +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPD 434
G++Y G A + +Q L ++
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-28
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ LGV D A+ ++ AL P ++L L G ++ A E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISL-----------AIDAYEQCLKIDPDSRNAGQNR 442
+A P Y Y L Y + A+ + +++P R
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 8e-17
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
Q+ LGV G+ DAA + E+A+ NP EA L G ++ A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 425 YEQCLKIDPDSRNAGQNR 442
+ + P
Sbjct: 62 GKTLVARTPRYLGGYMVL 79
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 3e-58
Identities = 62/406 (15%), Positives = 118/406 (29%), Gaps = 52/406 (12%)
Query: 54 YANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRL--AFD 103
YA + + D + V + E +G + A
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 104 SFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
F +A++ P+N + I + A + +A+ +P + LA+ L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ + +G + EAL+ P + Y + D A+ +KA
Sbjct: 220 HKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
P A +C +G Y+ + V E KL
Sbjct: 277 IPNNAYLHCQIGCCYRAKV------------FQVMNLRENGMYGKR----------KLLE 314
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--- 337
I VA+ KKA N + L + +++ A +++ F
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 338 NNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G DKA+ + + I + D ++ + ++
Sbjct: 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLS 424
Query: 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
N +EA + L L + A + E+ L+ +A
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 2e-53
Identities = 55/379 (14%), Positives = 115/379 (30%), Gaps = 43/379 (11%)
Query: 103 DSFSEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAE--CLAI 158
D + + A L +G+ A E KA +
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLV 95
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY-NLGVVYSEL---------MQYD 208
+ G D + + ++ Y + E Q +
Sbjct: 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A C+EKA ++P E + + N ++AI + + ++P+ + K +
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ L + + + +G ++AL D + + Y + D AI +
Sbjct: 216 ALKLHKMR---EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 326 AFHFNPHCAEACNNLGVIYKDR-------------------DNLDKAVECYQMALSIKPN 366
A + P+ A +G Y+ + + + AV + A N
Sbjct: 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLG-VLYRDAGSISLAI 422
+ + L ++ + + + A +K + T + G AI
Sbjct: 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392
Query: 423 DAYEQCLKIDPDSRNAGQN 441
+ + +KI+ SR +
Sbjct: 393 HHFIEGVKINQKSREKEKM 411
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-51
Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 52/353 (14%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI---CLQMQNMGRLAFDSFSEA 108
+ + N+ A +E LEK N E G I L + A D +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 109 VKLDPQNACAHTHCGI----LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++L+P N + + ++ E + +AL P VL
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-------TDVLRSAA 254
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM------------------- 205
+ I+ +AL+ P+ A + +G Y +
Sbjct: 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--- 262
A+ +KA + ++ E A +++ + +
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
++ + ++ + + N + + ++
Sbjct: 375 LRYGNFQLYQM------KCEDKAIHHFIEGVKINQKSREK-EKMKDKLQKI--------- 418
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
++ N +EA + L + + + + +A E + L + + G
Sbjct: 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-42
Identities = 47/335 (14%), Positives = 90/335 (26%), Gaps = 52/335 (15%)
Query: 167 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
++ + D K + + A L + Q + AL C KA
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 218 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--------NNMAI 267
+ N +Y + G L ++ V F
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYE 324
G + ++KAL + L +A AI
Sbjct: 145 TRLKCGGN-----QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199
Query: 325 LAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380
A NP L + ++ + + + + AL P + L + Y
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------------------ISLA 421
+ + D A E+++KA+ P A + +G YR I A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ ++ + + + LA + ++
Sbjct: 320 VAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 2e-56
Identities = 71/373 (19%), Positives = 127/373 (34%), Gaps = 55/373 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKL 169
L ++ + + + G S+ S ++ CL L G L
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLE--LALEGERLCN 60
Query: 170 AGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----- 220
AG+ + G+ + A++ + Y LG Y L Y+ A+ ++ L
Sbjct: 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-LTLAKSM 119
Query: 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMAIALTDL 272
R A++ N+G K G + A C ER L ++ + N+
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 273 G----------TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKF 316
G ++ + + V +Y++ L A NLG Y + F
Sbjct: 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239
Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
AI ++ F A +NLG + + A E Y+ L++ +
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
+QS +LG YT+ + + A E + + A A +LG + G
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359
Query: 419 SLAIDAYEQCLKI 431
A+ EQ L++
Sbjct: 360 ERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 5e-50
Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 63/348 (18%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---- 220
G+ G + + G + ++ A ++
Sbjct: 22 GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA-IQAGTE 80
Query: 221 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ Y +G Y GD A+ ++ L ++ + + A + +LG +K+
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVM 139
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEM-----------------LKF 316
G ++ ++ L A+YNLG Y
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Query: 317 DMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------K 364
A+ FY+ AC NLG Y + A+E +Q L I +
Sbjct: 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLYRDAGSI 418
++ +NLG + G+ + AAE ++ + A++ +LG Y
Sbjct: 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
+ AI+ + + L I ++ G A + L AH G
Sbjct: 320 NTAIEYHNRHLAI---AQELGDRIGEARACWS------LGNAHSAIGG 358
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
G Y G A E + + L + AAE ++LG S G +D + Y
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYK 287
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAY 228
L + A + Y+LG Y+ L +++TA+ + + L R A A
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARAC 346
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVS 255
++G + G E A+ E+ L ++
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 8e-53
Identities = 71/333 (21%), Positives = 115/333 (34%), Gaps = 55/333 (16%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 207
+A CL L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS------ 255
AL + ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQG-------------VAYYKKAL------YYN 296
A N+ G G + G V Y++ L
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNL 350
A NLG + + F A++ +E F A +NLG Y
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Query: 351 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAAN 398
+ A E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 42/283 (14%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
G + + +E A ++ + Y +G Y D A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 64 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A+YNLG Y K + R+ L AV+ Y+
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQ--------------DTGEFPEDVRNALQAAVDLYEE 168
Query: 360 ALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNN 407
LS+ + ++ NLG + + G A E+ + AY+N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
LG Y G A + Y++ L + +R + A + +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 268
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-36
Identities = 70/335 (20%), Positives = 113/335 (33%), Gaps = 59/335 (17%)
Query: 87 GKGICLQMQNMGRL---------AFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLV 133
G CL++ G F AV++ ++ + ++ G Y
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------ 187
+A E +H L+ + A +LG +LK+ GN + I L I
Sbjct: 61 KALEYHHHDLTLARTIGDQLG-EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 188 PHYAPAYYNLGVVYSEL--------------------MQYDTALGCYEKA------ALER 221
A A YNLG VY A+ YE+ +R
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
A+ N+G + G+ A+ +E+ L ++ F K A ++LG G+
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGE 238
Query: 282 INQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 329
YYKK L A + Y+LG Y + ++ AI ++
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
AC +LG Y N D+A+ + L I
Sbjct: 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 9e-22
Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 31/261 (11%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
A + N+ L+ F +A+ + L+ ++ + +G+ L N+G +
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALY--NLGNVYHA-- 135
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLG 164
K G +D ++AA + + LS + A +LG
Sbjct: 136 ----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLG 190
Query: 165 TSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA- 217
+ L GN +D + + + L I AY NLG Y L +++TA Y+K
Sbjct: 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250
Query: 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
+R + A++ ++G Y D E AI + + LA++ + + A L
Sbjct: 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSL 309
Query: 273 GTKVKLEGDINQGVAYYKKAL 293
G G+ +Q + + +K L
Sbjct: 310 GNAYTALGNHDQAMHFAEKHL 330
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 2e-52
Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 44/227 (19%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D Y + G+ +++ +Y A+ E+ + ++G+ Y G ++
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 306
ER LA +P+ L
Sbjct: 64 LLERSLADAPD-----------------------------------------NVKVATVL 82
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++PN
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
+ + Y G+ + A +KA + + L ++ R
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 2e-50
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + I+ G +Q V ++ + D +LG+AY +
Sbjct: 5 DIRQVYYRDKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
D E + P + LG+ Y D AV P LG
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117
Query: 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
V G+ D A + + A+ P + + + Y G A+ +++ ++D +
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Query: 436 RNA 438
Sbjct: 178 SVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-46
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 44/216 (20%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S AG + + D +LG+ Y + D E++ + P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ +G+ Y + A+ + +P
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------- 108
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ + LGVA + +FD AI +++A P+ + +
Sbjct: 109 ----------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
Y+ ++A+ ++ A + S L +V
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASV---ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-41
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 7/179 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ KGI A + D + H GI Y G + E ++
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P V T LG + + + + +P + LGV
Sbjct: 69 LADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
L ++D A+ ++ A RP + + + Y+ G E A+ +++ + +
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 3e-41
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ G+++ + ++ A++ E + + + +LG+ Y +D+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417
+ +L+ P+ + LG+ Y K D A ++ K ANP LGV + G
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 418 ISLAIDAYEQCLKIDPDSRNAGQNR 442
AID+++ L + P+ +
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-30
Identities = 19/109 (17%), Positives = 40/109 (36%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ + G+ + +AV + +LG+ Y G +D E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
++E+++A P + LG+ Y LA+ + + +P + N
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 76.3 bits (189), Expect = 2e-16
Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
K+ A+ L V E + N G+ L A DSF A+ L P
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
H Y+ GR EA + KA D + LA+V
Sbjct: 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 1e-06
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ + Y + G+ + AG S A+ EQ D + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-48
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 10/226 (4%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
+ L + Y Y A E A P A+ IY+ + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--YYNWHYADAMYN 305
+ + L++ P+ NN L + +AY+ KAL A N
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCG------RLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
G+ + +F +A + + + P A L L A ++ S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411
LG + + + A E + + VL
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-47
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 12/233 (5%)
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
A + + + + Y D A A E L P E+A A L
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEMLKFDMAIVFYE--LAFHFNPHCA 334
++ +++AL A+ N G G + + ++ +++ LA P
Sbjct: 57 ---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
A N G+ + A + +L+ +P F + L + G++ A +K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ LG ++ A ++ A AYE ++ + + + + +
Sbjct: 174 QSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-37
Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 19/240 (7%)
Query: 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EK + + R A S +A+K DP+N A +Y+ +A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 192
ES+ +ALS P A + + G L + + + +AL P
Sbjct: 62 QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A N G+ ++ Q+ A +++ +P + A+ + G L A +++
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ + + K+ + A Y+ ++ + V G+
Sbjct: 175 SRVEVLQADDLLLGW---------KIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-33
Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 8/214 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + A A E L+ D N A + + Q + A +SF +A+ + P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 115 NACAHTHCGI-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+A + + G L R E+ + KAL ADP+Y + G G
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYI----ANLNKGICSAKQGQF 129
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+L P + PA+ L Q A ++K + +G
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG- 188
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+K L +A A YE + NF ++ +
Sbjct: 189 -WKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-48
Identities = 69/373 (18%), Positives = 125/373 (33%), Gaps = 69/373 (18%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G G + A+ + L+ + + LG + + ++ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYC 229
L + A A NLG L +D A+ C ++ L+ + A A
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALY 131
Query: 230 NMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKNNMAIAL 269
N+G +Y +G L++A+ YE L++ + A
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAF 190
Query: 270 TDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
+LG L G+ V +++ L A NLG AY + +F+ A +Y
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 324 ELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSL 371
+ A++C +LG Y + +KA++ + L+I + ++
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIA-------------ANPTYAEAYNNLGVLYRDAGSI 418
+LG YT G D A EK + A ++ LG+ Y SI
Sbjct: 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370
Query: 419 SLAIDAYEQCLKI 431
+ L
Sbjct: 371 MSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-32
Identities = 48/275 (17%), Positives = 83/275 (30%), Gaps = 50/275 (18%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
G GD + ++ +E + V ++ + LG
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYL 60
Query: 280 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------F 327
D + + Y+ L A A NLG + FD AIV +
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKA--------------------VECYQMALSI---- 363
+ A A NLG +Y + V+ Y+ LS+
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 364 --KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
+ ++ NLG + + G A E+ + AY+NLG Y
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240
Query: 416 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
G A + Y++ L + +R + A + +
Sbjct: 241 GEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 272
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-28
Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 64/287 (22%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 245
G + + +E A ++ + Y +G Y D A+
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 299
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 68 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A A+YNLG Y K ++ + RD L AV+ Y+
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVG--------------EFPEEVRDALQAAVDFYEE 172
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
LS+ A+ A+ NLG + G+
Sbjct: 173 NLSLV----------------------------TALGDRAAQGRAFGNLGNTHYLLGNFR 204
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
A+ A+EQ L I ++ G Y N G+ A+ G+
Sbjct: 205 DAVIAHEQRLLI---AKEFGDKAAERRAYSNLGN------AYIFLGE 242
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 9e-48
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + P +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 420 LAIDAYEQCLKIDPDS 435
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 140 bits (357), Expect = 9e-40
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G D ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDE 53
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 345 KDRDNLDKAVECYQMALSIKPN 366
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-33
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
AEA+ N+G Y +GD + AI Y++ L + P A N+ A GD
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-------GDY 119
Query: 283 NQGVAYYKKALYYN 296
++ + YY+KAL +
Sbjct: 120 DEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-33
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSPN 257
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 86.3 bits (215), Expect = 2e-20
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 97
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+DP A A+YNLG Y + YD A+ Y+KA
Sbjct: 98 ----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 75.9 bits (188), Expect = 1e-16
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AEA+ NLG Y G AI+ Y++ L++DP S A
Sbjct: 34 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 46.2 bits (111), Expect = 2e-06
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
AEA+ NLG Y G AI+ Y++ L++DP S A N
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 6e-04
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP+
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 115 N 115
+
Sbjct: 136 S 136
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 8e-47
Identities = 54/335 (16%), Positives = 104/335 (31%), Gaps = 16/335 (4%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
++ +E + + ++ + V + + +Q+ E
Sbjct: 34 SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEE 93
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
L A A G + Y A KA P EA+ +G +Y +GD+
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--GDINQGVAYYKKALYYNWHY 299
SA C+ L N + N+++ L L T E + V K A+ +
Sbjct: 154 TSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212
Query: 300 ADAMYNLGVAYGEML--------KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRD 348
+ Y LG AY + A+ Y A + + N ++K +
Sbjct: 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +A+E + A ++ P + + + ++ + E K
Sbjct: 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRP 332
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 442
L + + L++ P S G N
Sbjct: 333 AHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 3e-44
Identities = 53/342 (15%), Positives = 110/342 (32%), Gaps = 28/342 (8%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKL 111
+ + + L E VL +A + KG L + A S+AVKL
Sbjct: 73 AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG--TSLKL 169
+P+ A G +Y +G + A + AL+ + + + L++VL L + +
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEH 191
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY--------SELMQYDTALGCYEKAA--- 218
+ + D +++ A+++D ++Y LG Y AL Y +A
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + + N ++K A+ + + A+ P + + L L
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL------ 305
Query: 279 EGDINQGVAYYKK------ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
+ + K + G + + + P
Sbjct: 306 -SRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG 364
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
LG + +K + + S P ++ + N+
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNV 406
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 2e-41
Identities = 40/332 (12%), Positives = 91/332 (27%), Gaps = 39/332 (11%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 212
+ + +QK + + +Y+ V + + L
Sbjct: 30 MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89
Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 271
E+ + A+A G D A + + + P A N +
Sbjct: 90 QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVF 322
GD+ + AL + + ++ NL + ++ ++
Sbjct: 150 K-------GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 323 YELAFHFNPHCAEACNNLGVIY--------KDRDNLDKAVECYQMALSIK---PNFSQSL 371
+LA + + LG Y ++ +A+ Y A + +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
N ++ + A E +A A +P + E L ++ +++ K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KT 318
Query: 432 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
P + L + G + +
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 4/184 (2%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
Y N ++ AL+ Y + K S N + H+ + + + A + FS+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A LDP L + RL ES K L G
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK-TKPKKLQSMLGSLRPAHLGPCGDGR 342
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + Q + + P LG V L + + + P YA
Sbjct: 343 YQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVM 402
Query: 228 YCNM 231
N+
Sbjct: 403 VYNV 406
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-41
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 26/213 (12%)
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283
+ G A++ + + +A++ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41
Query: 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
Y+ + + L +AY + +D A +FY+ P+ + +
Sbjct: 42 ----YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIEKAIAANPTYA 402
R A+ Y+ L ++ + + LG Y + + E K +++
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
A G+ A ++ ++ + P +
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 1e-34
Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
Q+ + G+ +A + + ++ +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM--------------------- 40
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ K + L + Y + YD A Y++ + P +
Sbjct: 41 ----YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ RG + A+ YE+ L + + A + + + K L
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA------EQEKKKLETDYKKL 150
Query: 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A Y G++ +++ A + P EA L I + +++
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-30
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 342
D M A E + A+ ++ N E L +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
YK N DKA Y+ L PN L + +G+ A M EK +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 403 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
A LG Y ++ + L + A ++ + +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-27
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK----------------GICLQMQ 95
L + + A++ + + + E + + +
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A+ + E ++ P N C + G+ +A Y K L + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L K ++ Y+ L A Y G+ +Y+ A +
Sbjct: 128 LGNYYYLTAEQEKKK------LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLE 242
K L P EA + I + ++
Sbjct: 182 KVILRFP-STEAQKTLDKILRIEKEVN 207
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-39
Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 70/316 (22%)
Query: 177 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 221
+ ++ P +NL + Y+ +Y+ A+ ++A LE+
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 222 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 268
P A + ++Y+++ + A LA+ P NN+A+
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 269 LTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAI 320
G + K+AL H A + NL + K++
Sbjct: 121 YGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173
Query: 321 VFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------ 364
+Y+ A P+ A+ NNL Y + +A Y+ L+
Sbjct: 174 YYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 365 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 415
+ +GK E +PT NLG LYR
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291
Query: 416 GSISLAIDAYEQCLKI 431
G A E ++
Sbjct: 292 GKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 57/320 (17%), Positives = 96/320 (30%), Gaps = 62/320 (19%)
Query: 125 LYKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
++ Y + + P+ L +L G + + +A
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPA-------RLRTLHNLVIQYASQGRYEVAVPLCKQA 53
Query: 184 LKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER-------PMYAEA 227
L+ P A L +VY + +Y A A A+ P A
Sbjct: 54 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLE 279
N+ V+Y RG + A +R L + P+ NN+A+ + G
Sbjct: 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------ 167
Query: 280 GDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF---- 327
+ YY++AL A NL Y + KF A Y+
Sbjct: 168 -KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 328 -----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGV 376
+ + + + + K P + +L NLG
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286
Query: 377 VYTVQGKMDAAAEMIEKAIA 396
+Y QGK +AA + E A+
Sbjct: 287 LYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 55/289 (19%), Positives = 87/289 (30%), Gaps = 61/289 (21%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
I Y +GR A +AL P +A +L L + +
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-------VATMLNILALVYRDQNKYK 86
Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------AL- 219
D +AL I P A NL V+Y + +Y A ++A L
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 220 -ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIALT 270
+ P A+ N+ ++ +N+G E Y+R L + PN KNN+A
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAIV 321
G Q YK+ L + K
Sbjct: 207 KQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Query: 322 FYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
F E + P NLG +Y+ + + A + A+ +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-38
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
AL + PN +++ NLG Y QG D A E +KA+ +P AEA NLG + G
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-34
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------------- 41
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 42 ----------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 122 bits (310), Expect = 2e-33
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + PN A N+ A GD ++ + YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQ-------GDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 305 NLGVAYGEM 313
NLG A +
Sbjct: 116 NLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-33
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
A+ +P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-32
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 95.5 bits (239), Expect = 9e-24
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 41/159 (25%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ EA G Q A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL +DP+ A A+YNLG
Sbjct: 68 KALE-----------------------------------------LDPNNAEAWYNLGNA 86
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 82.8 bits (206), Expect = 3e-19
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNA 438
AI+ Y++ L++DP++ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 70.1 bits (173), Expect = 8e-15
Identities = 36/149 (24%), Positives = 51/149 (34%), Gaps = 41/149 (27%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D N EA G Q A + + +A++LDP N
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL
Sbjct: 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 105
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+DP+ A A NLG +
Sbjct: 106 ----------LDPNNAEAKQNLGNAKQKQ 124
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 8e-34
Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 58/288 (20%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 244
+ ++ S L+ +A+ ++A LE+ P A + ++Y+++ + A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 245 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
LA+ P NN+A+ G + K+AL
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KYKEAEPLCKRALEIR 115
Query: 294 ---YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACN 338
+H A + NL + K + +Y A P+ A+ N
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKN 173
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAE 389
NL Y + A Y+ L+ + + + K +A
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Query: 390 MIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
E +PT +LG LYR G + A + +
Sbjct: 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-33
Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)
Query: 163 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 208
+G+S + +AL+ P A L +VY + +Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 209 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 255
A A L P A N+ V+Y RG + A +R L +
Sbjct: 61 EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 256 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAM 303
P+ NN+A+ + G + YY++AL + A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQG-------KAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 304 YNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDNLDKAV 354
NL Y + K+ A Y+ N + + +D +
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 355 ECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
+ K P + +L +LG +Y QGK++AA + + A
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 49/290 (16%), Positives = 79/290 (27%), Gaps = 63/290 (21%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A +AL P A +L L + +
Sbjct: 8 HHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-------ATMLNILALVYRDQNKYK 60
Query: 175 DGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER----- 221
+ +AL I P A NL V+Y + +Y A ++A LE
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-LEIREKVL 119
Query: 222 ----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIAL 269
P A+ N+ ++ +N+G E Y R L + PN KNN+A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAMYNLGVAYGEMLKFDMAI 320
G YK+ L + K +
Sbjct: 180 LKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 321 VFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ E + P +LG +Y+ + L+ A A +
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-31
Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 37/317 (11%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------------ALER 221
+++ + ++ D Y + + ++ Y Y L
Sbjct: 38 VEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTG 97
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTK 275
+ + G+ ++ + AI Y P E A+ +A A +
Sbjct: 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 329
I Q + Y+ Y+ +++ + Y + +D A+ E A
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKM 384
+ A + N+ Y + AVE +Q A + + L L G+
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277
Query: 385 DAAAEMIEKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
A + IE+ + ++ Y E + L +Y++ D K + +
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337
Query: 440 QNRLLAMNYINEGHDDK 456
R A + + H ++
Sbjct: 338 CARSAAAVFESSCHFEQ 354
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 9e-31
Identities = 39/274 (14%), Positives = 84/274 (30%), Gaps = 25/274 (9%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ VEA Y +A P E A + +
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEFHFKVAEAYYHMK 155
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +AL I + + + Y + YD AL E A
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
A + N+ Y GD + A+ +++ VS E + + L L +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--EKVPDLLPKVLFGLSWTLCK 273
Query: 279 EGDINQGVAYYKKAL--------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
G + + ++ L + + + + K + ++E + +
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLH 332
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ + +++ + ++A Y+ L +
Sbjct: 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 7e-29
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 60/286 (20%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
+ I Y EA K D A ++ + Y + Q ++ +A
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277
L ++ + Y + + A+ E L ++
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------------------- 212
Query: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-----HFNPH 332
+ + A ++ N+ +Y MA+ ++ A
Sbjct: 213 -------------MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAA 387
+ L KA + + L + + L VY
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 388 AEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
+++ + + + ++ + A Y + LK
Sbjct: 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 66/318 (20%)
Query: 206 QYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
A + E Y M ++ D Y V+ E
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 260 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319
+ + + + YY + G+ + ++ A
Sbjct: 87 TIE--------------TPQKKLTGLLKYY----SL--------FFRGMYEFDQKEYVEA 120
Query: 320 IVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPN 366
I +Y A AE + Y ++ AL I
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISL 420
QSL + Y D A +E A+ + A + N+ Y +G +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 421 AIDAYEQCLKIDPDSRNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWG 465
A++ +++ K+ + ++L A +I EG D +H+ +
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 466 KRFMRLYSQYTSWDNTKD 483
+ F+ L + Y + +
Sbjct: 301 ELFLFLQAVYKETVDERK 318
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-20
Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 61/297 (20%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL----------- 100
+ ++V+A+ Y ++ V I K +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHF--KVAEAYYHMKQTHVSM 161
Query: 101 -----AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A D + + + Y D +A AL
Sbjct: 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL------------ 209
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
+ ++ D A + N+ Y A+ ++
Sbjct: 210 -----------------------ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 216 KA-----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN-NMAIAL 269
KA + + + G + A E L + + L
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ + E I+ ++Y++K + + + + F+ A FY
Sbjct: 307 QAVYKETVDERKIHDLLSYFEKKNLHA-YIEACARSAAAVFESSCHFEQAAAFYRKV 362
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-30
Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 24/274 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ + A + + KA S K E A + S
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEFFFKMSESYYYMK 157
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +A +I + + + +L QY+ A+ ++KA
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ + N+G+ ++ E AI ++R +AV ++ A +
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYK 276
Query: 279 EGDINQGVAYYKKAL-----YYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELAFHFN 330
G I++ Y+ K + + Y L Y + F E
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY 335
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364
+ ++ Y +R N KA + ++
Sbjct: 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-28
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 394 AIAANPTYAEAYNNLGVLYRDAG 416
A+ +P AEA NLG + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 1e-26
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 97.5 bits (244), Expect = 8e-25
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQG 382
AL + PN +++ NLG QG
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 4e-22
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
+ I YY+KAL + + A+A NLG A +
Sbjct: 58 DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 84.0 bits (209), Expect = 5e-20
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRG 239
AEA N+G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 83.2 bits (207), Expect = 8e-20
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 362 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 421 AIDAYEQCLKIDPDSRNAGQNR 442
AI+ Y++ L++DP++ A QN
Sbjct: 62 AIEYYQKALELDPNNAEAKQNL 83
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 41/123 (33%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
EA G Q A + + +A++LDP NA A + G Y +G EA E Y K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
AL +DP+ A A NLG
Sbjct: 69 ALE-----------------------------------------LDPNNAEAKQNLGNAK 87
Query: 202 SEL 204
+
Sbjct: 88 QKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 41/199 (20%)
Query: 171 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G + + AL + ++ +N+G +Y+ L A + ++ A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
AY G++Y + AI + L NQ +
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------------------------NQLI 107
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
Y L + + +YN+ Y + ++ A LA
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PR 155
Query: 347 RDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 156 HSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-26
Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A +++N GV + + A+ + + C N+G +Y N+ +A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 403
+++ + + + G++Y K D A + +++A+ E
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
N+ +Y A + + + R++ ++ AM + + +
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 7e-21
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 26/174 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ A + + G+L D+ A +++ ++G +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI----------CFNIGCMYTIL 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------- 220
N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110
Query: 221 ------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ E N+ +Y + + + A ++ +K + A+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-20
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A + N GV+ D+ + A++ + +++ S+ N+G +YT+ M A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
+I + A AY G+LY LAI ++ L ++ ++Y G
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114
Query: 454 DDKLFEAH 461
KLF
Sbjct: 115 QFKLFACE 122
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 7e-18
Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 31/200 (15%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+A+S + + + AL + V + S G + A +F
Sbjct: 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAF 60
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA---------ECL 156
+ ++ D A A+ G+LY + A + +AL +
Sbjct: 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
VL ++ + ++ A + + D A+ C K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK------------IDKAMECVWK 168
Query: 217 AALERPMYAEAYCNMGVIYK 236
L P+ +G +++
Sbjct: 169 QKLYEPV----VIPVGRLFR 184
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 42/218 (19%)
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMG 232
+ L + A + LG VY+ + ++D A ++ + + A +G
Sbjct: 14 QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292
++ + G+ ++A C+ + + + ++ T GD+ Y+K+
Sbjct: 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133
Query: 293 LYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
L A A LG + + NL
Sbjct: 134 L--------VYAQQADDQVAI---------------------ACAFRGLGDLAQQEKNLL 164
Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 383
+A + + A I ++ + L +
Sbjct: 165 EAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-22
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
+ A + LG Y M +FD A ++ + A + +G++ + N D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 354 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 400
C+ + S + + V G + A + EK++
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
A A+ LG L + ++ A + + I + +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-19
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
+ A LG +Y D D+A +Q ++L+ +G+V + G DAA
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 388 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+ + + + G ++ A YE+ L ++ A
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142
Query: 441 NRLLAMNYINEGHDDKLFEAHRDWGK 466
+A + G + +
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 3e-19
Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 15/181 (8%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+ + A G +Y R EA S+ L +G
Sbjct: 16 QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGM 74
Query: 166 SLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA- 217
++AGN + + E ++ + Y + V A YEK+
Sbjct: 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134
Query: 218 -----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
A ++ A A+ +G + + +L A + R + E + +T L
Sbjct: 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE-DSEAVNELMTRL 193
Query: 273 G 273
Sbjct: 194 N 194
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 44/200 (22%)
Query: 55 ANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
+ ++F +A A ++ + + + SG+ H + L +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRAL--HQV--------------- 72
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
G++ + G A + + S + ++ T G+
Sbjct: 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 173 TQDGIQKYYEALKI-----DPHY-APAYYNLGVVYSELMQYDTALGCYEKA------ALE 220
Q+Y ++L D A A+ LG + + A + +A +
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
Query: 221 RPMYAEAYCNMGVIYKNRGD 240
E + + +
Sbjct: 183 SEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 352 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 399
+A + S + LG VY + D A + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A + +G++ R AG+ A + + ++
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL 95
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446
A + +A T + A LG +Y A +++ + ++ +G +
Sbjct: 11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ---AQKSGDHTAEHR 67
Query: 447 NYINEGHDDKLFEAHRDWGK 466
G R G
Sbjct: 68 ALHQVG------MVERMAGN 81
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 5e-26
Identities = 28/240 (11%), Positives = 69/240 (28%), Gaps = 13/240 (5%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
+ + Y + + E A + ++ + + L L D
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------D 147
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+++ + Y + ++ V + + F + + A +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------YTVQGKMDAAAEMIEKAI 395
+ ++ D ++ L + N V Y + ++ + + I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 455
P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 6e-22
Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 19/263 (7%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 149 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 261
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320
Query: 346 DR---------DNLDKAVECYQM 359
D D L+KA+E ++
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 3e-19
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)
Query: 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350
+ Y+ + D + + A A N + V+ K + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ + + +P Q ++ V+ E I + + A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 470
+ ++ + +Q LK D + + R ++ +D + E + ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 471 LYSQYTS 477
L S
Sbjct: 269 LVPHNES 275
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 19/192 (9%), Positives = 58/192 (30%), Gaps = 6/192 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+ + ++E+ N + + + ++ + ++ + D +N A H +
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
++ + + L D V+++ + +Q E +K
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIK 268
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI----YKNRGDL 241
+ PH A+ L + + + +P ++ Y ++
Sbjct: 269 LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327
Query: 242 ESAIACYERCLA 253
++ + L
Sbjct: 328 DNKEDILNKALE 339
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 353
A NLG + + F A++ +E F A +NLG Y + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 354 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 401
E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
A +LG Y G+ A+ E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-25
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 47/186 (25%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 244
A+ NLG + L + A+ +E+ ++ AY N+G Y G+ E+A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
Y++ L + + L A + Y
Sbjct: 69 SEYYKKTLLL-----------------------------------ARQLKDRAVEAQSCY 93
Query: 305 NLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+LG Y + ++ AI ++ AC +LG Y N D+A+ +
Sbjct: 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
Query: 359 MALSIK 364
L I
Sbjct: 154 KHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 5e-24
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 47/189 (24%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
R A+ N+G + G+ A+ +E+ L ++
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------------ 39
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHC 333
K A NLG AY + +F+ A +Y+
Sbjct: 40 -----------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A++C +LG Y + +KA++ + L+I + ++ +LG YT G D A
Sbjct: 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Query: 388 AEMIEKAIA 396
EK +
Sbjct: 149 MHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-18
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A + G + G +A ++ + L + I ++LG + G +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFET 67
Query: 176 GIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RP 222
+ Y + L + A + Y+LG Y+ L Y+ A+ + K L R
Sbjct: 68 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-HLAIAQELKDRI 126
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
A ++G Y G+ + A+ E+ L +S
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-26
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G++ ++ A + +E P EA +LG+ + + A+
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
A + P L V +T + +AA + + + P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 4e-22
Identities = 18/97 (18%), Positives = 37/97 (38%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S+ N + + + +P A+ +LG+ +E + A+ A + P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+ + V + N + +A+A L P +E
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-21
Identities = 17/101 (16%), Positives = 35/101 (34%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E G+ NL +A ++ +P ++ +LG+ K A +
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
A +P + L V + + + + A+ + L P
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-20
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G+ +L A +E + P EA+ ++G+ AI
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ P +A++ T+ E + N +A + L Y
Sbjct: 77 ARMLDPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-20
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
G+ + AA E P EA+ +LG+ + LAI A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 464
P LA+++ NE + + + R W
Sbjct: 82 PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 8e-19
Identities = 17/98 (17%), Positives = 36/98 (36%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
G + ++ + ++ +A +LG+ E K +AI+ A +P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
L V + + N + A+ + L +P + Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G+ L EAA ++ +P + A LG + I
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNH 76
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
A +DP + L V ++ + AL L +P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 4e-17
Identities = 20/104 (19%), Positives = 38/104 (36%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
++ + + +A +E V +K+ EA G+ LA + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
A LDP++ H + + +E A S L + P Y+
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 7e-14
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
E + +G+ + A +F + +P+ A G+ + + A + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191
A DP L S N + L P Y
Sbjct: 76 HARMLDPKDIAV-------HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 28/291 (9%)
Query: 314 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +A++F F H + N +LD + + S
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
NL V++ + A+ + A+N + + +Q ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 487
+ + +Y + + A +R + S+Y D +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275
Query: 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 547
+++ + + HS+ + + +++ ++ + D ++ +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326
Query: 548 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQV 594
+ G + K+ +R + I + + + AP+Q
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQA 377
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 171 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I + P L Y +Y L + ++ +A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ ++ +A +R ++ S + L + + + + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALR-- 122
Query: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI--YKDR 347
+ + M ++ + D+A + + +
Sbjct: 123 ---TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
+ L A +Q LN + QG+ +AA ++++A+ + + E N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 408 LGVLYRDAGSISLAIDAYEQCLK-IDPDS 435
L VL + G + Y LK
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 5e-15
Identities = 29/263 (11%), Positives = 63/263 (23%), Gaps = 22/263 (8%)
Query: 206 QYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Y + ++ P E + Y + + + +
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP 63
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVF 322
A+ + + VA + + + + + L Y D A+
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
E I D LD A + + + + + V G
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 383 --KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
K+ A + ++ N + G A ++ L D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 441 NRLLAMNYINEGHDDKLFEAHRD 463
N L + + G ++ +
Sbjct: 239 N--LVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 24/171 (14%), Positives = 40/171 (23%), Gaps = 14/171 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A+I AL ++E L + LA +
Sbjct: 105 LMAASIYFYDQNPDAALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159
Query: 112 DPQNACAHTHCGI--LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
D L +L +A + + ++L
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMA 212
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
G + EAL D + NL V+ L + Y +
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 3e-11
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 10/143 (6%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
IL ++ A + + ++D + +L A+ F E
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+ +GR A +AL D + L +L +
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQH 246
Query: 170 AGNTQDGIQKYYEALK-IDPHYA 191
G + +Y LK +
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHP 269
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 5e-10
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A ++ ++ K DA +++ + +K S + G+ C Q A EA+
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESY-HKALSADPSY 149
D + + +L + G+ E Y + A S+
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 6e-24
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
E GV+ D N ++++ ++ A+ + P S+ G + + A +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 390 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
I + + + R + + E K++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 8e-24
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ YY GV+ + Y ++ +EKA P ++ + G N E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 246 ACYERCLAVSPNFEIAK--NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
CY + V + A AL + E + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIE---GKEVEA----EIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 3e-21
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
G AGN + I + +A+++DP + + G L +Y+ A+ CY +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + E E + +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 3e-21
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
+ Y GV + + +I +E A +P ++ G + + ++AV+CY
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 358 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
+++ + + AE+ E +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 2e-20
Identities = 13/148 (8%), Positives = 38/148 (25%), Gaps = 43/148 (29%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
E Y GV+ + G+ +I +E+ + + P
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------ 38
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNN 339
+ G A + +++ A+ Y + + + +
Sbjct: 39 -----------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNF 367
+ + + E + ++ +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 2e-15
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 43/139 (30%)
Query: 81 NVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
N E + +G+ + G + D F +A++LDP+ + G + R EA +
Sbjct: 5 NPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y+ ++ + D + +
Sbjct: 63 YNYVIN---------------------------------------VIEDEYNKDVWAAKA 83
Query: 199 VVYSELMQYDTALGCYEKA 217
+ + E
Sbjct: 84 DALRYIEGKEVEAEIAEAR 102
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 8e-15
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
+ + GV+ G + ++ EKAI +P ++ + G + A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 423 DAYEQCLKIDPDSRNA 438
D Y + + D N
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 8e-13
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL- 111
+ + +++ L+E ++ D + + KG L N+ R A D ++ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEEAVDCYNYVINVI 70
Query: 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
D N + AE + +
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 7e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
E Y GVL DAG+ + +ID +E+ +++DP+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 55 ANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
L + ++ +A+ Y I + +D N + K L+ + + KL+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 113 PQNA 116
+
Sbjct: 107 HHHH 110
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 5e-23
Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A Y V +KN LE A Y + N + A A G +K + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPE 94
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
V Y +KA Y E D A A A + G +
Sbjct: 95 AVQYIEKASVM--------------YVENGTPDTA--------------AMALDRAGKLM 126
Query: 345 KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
+ D L KAV YQ A ++ ++ + + Q K D AA ++K +
Sbjct: 127 EPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 399 ------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQNRLLAMNYIN 450
PT + ++ A + I S + L +
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL-QAYD 244
Query: 451 EGHDDKLFEAHRDWGKRFMRLYSQYT 476
E +++L R + + Y
Sbjct: 245 EQDEEQLLRVCRS--PLVTYMDNDYA 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 71/294 (24%)
Query: 130 GRLVEAAESYHKA--------LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
++ EA E KA + P Y AA + K A + Y
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYL 60
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCN 230
+ + H A A+ G++ +L + A+ EKA+ P A +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
DL A+ Y++ AV N E
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEE------------------------------- 149
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIY 344
A+ + KFD A + P C + C ++
Sbjct: 150 ----RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 345 KDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGVVYTVQGKMDAAAEMIEK 393
R + A +C + + SI P FS S L +L Y + + +
Sbjct: 206 LHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYD-EQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 3e-16
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 17/206 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ +K+ +L +A ++Y + A + + A G LK + +Q +
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA-AKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 183 ALKI-----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231
A + P A + E + A+ Y++AA AE
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ + + A A ++ ++ E D ++
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 292 AL-YYNWHYAD---AMYNLGVAYGEM 313
+ + ++ A+ +L AY E
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQ 246
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-22
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q ++ L + LG Y+E Q+D AL A P Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 234 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 273
+ +GD A +E LA + + + + + L L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-21
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
+ E + L+ + LG Y + DAA + A+ +PTY+ A+ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+ G + A A+E L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-20
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
E LG Y + + D A+ + AL P +S + LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 379 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427
QG A + E +AA + + L V R A++ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-17
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
+ L + LG Y E +FD A+ A F+P + A LG +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 346 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 387
+ + A + ++ L+ + Q + L V + DA
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-17
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
E L+ ++ LG + + AL DP Y+ A
Sbjct: 3 AITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 248
+ LG A +E + + V + ++ +
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
E +L + + N+ G A A+ DP + A G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 126 YKDEGRLVEAAESYHKALSADPSY--KPAAECLAIVLTDLG 164
+ +G A +++ L+A S + + L + L L
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-13
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+++ E LA + + + + + + + + + AL ++ Y+
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-------QFDAALPHLRAALDFDPTYS 53
Query: 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQ 358
A LG A +E + L V + D +
Sbjct: 54 VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-11
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
M A E +E +A LG Y + A+ L DP A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58
Query: 444 LAMNYINEGHDDK 456
L +G
Sbjct: 59 LGKTLQGQGDRAG 71
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-22
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ G + + +Y LG + K+D A ++ + + A LG
Sbjct: 2 SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 399
+ ++A++ Y + N + + + G +D A A A A P
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 400 TYAEAYNNLGVL 411
+ G +
Sbjct: 121 AHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 8e-22
Identities = 13/127 (10%), Positives = 29/127 (22%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + E LG D A + +Q + ++ LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ A + + + + G + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 443 LLAMNYI 449
A +
Sbjct: 127 ARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-21
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ L LG + AG D + + +D + A + L
Sbjct: 6 TLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G L Y+ AL Y AL + + GDL+ A + + A++
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 258 ---FEIAKNNMAIALTDLGTK 275
E L + +
Sbjct: 119 QPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-17
Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 7/124 (5%)
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+S + + G + ++ + + A
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-------KWDDAQKIFQALCMLDHYDARYFLG 57
Query: 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
LG + ++ A+ Y + + + + +LD A + A ++
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 366 NFSQ 369
Sbjct: 118 AQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 6e-15
Identities = 17/101 (16%), Positives = 32/101 (31%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
K+ DA +++ + D + +G G C Q + A S+S +D
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
H + G L A ++ A + +
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 8e-14
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 10/142 (7%)
Query: 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128
++ +E G A F LD +A G +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-- 186
G +A +SY D + G+ +Y A +
Sbjct: 65 LGLYEQALQSYSYGALMDINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 187 -DPHYAPAYYNLGVVYSELMQY 207
P + G + +
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 11/64 (17%), Positives = 13/64 (20%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L +S + AL Y D C A F A L
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 112 DPQN 115
Sbjct: 116 AAAQ 119
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-21
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
A A +LG + + +KA Y A+ + P+ NN VY + K +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 390 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
EKA+ A+A + G ++ +SLA+ + + L D
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 3e-19
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 5e-17
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
A A +LG + ++ A Y+KA P Y N +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
E+ + V +A A++ G + + D++ V ++ ++L
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 6e-16
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
A A ++G + D E A Y++ + + P+ NN A + +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEAC 337
+ V ++ A AM G A+ + +A+ ++ L+ +P +
Sbjct: 63 QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
Query: 338 NNL 340
L
Sbjct: 123 KEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-11
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ + + + +LG Q + A +KAI +P+ YNN +Y + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ E+ +++ ++R + AM+
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMS 87
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 15/88 (17%), Positives = 38/88 (43%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A++LDP N + + +Y +E + E + KA+ + + +A +
Sbjct: 27 AHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ G + + + +Q ++ +L
Sbjct: 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + F A Y+ +E D N+ + K + +AV++ +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75
Query: 116 -------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A A + G ++ + L A + +H++LS + +
Sbjct: 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 9e-21
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+P L + DN +A+ ++ + P++ + +LG +Y + D A +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 390 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 418
+ I + L A +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 7e-20
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
DP Y L + + AL +E+ P Y Y ++G +Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 247 CYERCLAVSPNFEIAK--NNMAIALTDLG 273
Y + + V+ K + + A
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-18
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
P + L + A + E+ + +P Y Y +LG LY AID
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 425 YEQCLKIDPDSRNA 438
Y Q +++ +
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-17
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
Y L + + A+ +E +P +LG +Y+ D D A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 359 MALSIKPNFS--QSLNNLGVVYTVQGKMD 385
+ + + L+ L ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-15
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
L N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 223 MYAEAY--CNMGVIYKNRGDLESAIACY 248
+ LE +
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 7e-15
Identities = 10/107 (9%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+E P + + + A+A +E + P++ ++ L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54
Query: 279 EGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFY 323
+ + Y + + + L A + + +
Sbjct: 55 -DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-10
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
+D + + A F E V+ DP + H G LY+ R +A
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 137 ESYHKALSADPSY 149
++Y + +
Sbjct: 62 DTYAQGIEVAREE 74
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+P L + + S A+ +E+ ++ DPD + L Y D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+D + A + ALAL+E ++E D V + G + + A D++
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 106 SEAVKLDPQNACAHTH 121
++ +++ +
Sbjct: 65 AQGIEVAREEGTQKDL 80
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 7e-20
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368
+ + + + NP +E LG Y +++ ++ Y+ AL ++ +
Sbjct: 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78
Query: 369 QSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425
+ L V Q MI+KA+A + A L + + AI+ +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 426 EQCLKIDPDSRNAGQ 440
++ + ++ N Q
Sbjct: 139 QKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 2e-16
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)
Query: 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
P ++ + D + + + + + + N ++ LG Y
Sbjct: 1 PKWQAVRAEYQ-RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLN 372
+ +++ Y A AE L + + + AL++ N +L
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
L +Q A E+ +K + N
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 8e-15
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
P ++ A D N + +Q + ++ +P + + LG Y
Sbjct: 1 PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 263
Y +L Y +A R AE Y + + ++ A ++ LA+ N A
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+A + Q + ++K +
Sbjct: 120 LLASDAFMQ-------ANYAQAIELWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 9e-15
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
QN + + ++ +PQN+ G Y + + +Y +AL
Sbjct: 21 ASQQNPEAQL-QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 152 AAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
L T L + T +AL +D + A L Y
Sbjct: 80 L-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 209 TALGCYEKAALERPMYAEAY 228
A+ ++K
Sbjct: 133 QAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ + N + ++ Q + P S+ LG Y Q + +A+ AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 404 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
Y L VLY A ++ L +D + A LLA + + + +A
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134
Query: 461 HRDWGK 466
W K
Sbjct: 135 IELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-12
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 10/135 (7%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + ++ + A+P + LG + + + Y +AL+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 186 IDPHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ A Y L V +KA A + + +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 243 SAIACYERCLAVSPN 257
AI +++ + ++
Sbjct: 133 QAIELWQKVMDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKL 111
+N + ++L Y L+ N E + L Q + +A+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
D A + +A E + K + + +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
Q + + Q +A + ++ I ANP +E + LG Y S ++ AY Q
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 429 LKIDPDSRNAGQNRLLAMNYINEGHDD 455
L++ ++ + Y H
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMT 97
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 8e-20
Identities = 16/148 (10%), Positives = 41/148 (27%)
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G + G + + +Y+L + ++ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG + D A+ Y + + + G++ A + A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
E + +I L + +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 1e-19
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + L L + +G +D + +D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + LG + QYD A+ Y A+ + G+L A +
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGT 274
+ N + L
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 1e-18
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + E +L + A +Q + S+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
G G+ D A + + G ++ A ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 435 SRNAGQNRLLAMNYINEGHDDK 456
+ + + K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 7e-17
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
G L S +S + ++A G ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDHY 53
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ LG M ++D+AI Y + + L +A
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390
+A + N + V ++ + EM
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-13
Identities = 20/96 (20%), Positives = 30/96 (31%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S A + DA +++ + D + +G G C Q LA S+S +D
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
H G L EA A +
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-11
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 7/127 (5%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
++ E S +E A F LD ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + G+ A SY D L G + +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF-------PFHAAECLLQXGELAEAESGLFL 114
Query: 183 ALKIDPH 189
A ++ +
Sbjct: 115 AQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + + I + E +L +G A ++ +D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-20
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
+ AE G +N + AV Y A+ + P + N Y+ G A +
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449
E+AI +P Y++AY +G+ A+ Y++ L++DPD+ N +A +
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 450 NE 451
E
Sbjct: 128 RE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 1e-19
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
N + + Y +A++++P A + N YS+L Y A+ E+A P Y++AY
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-17
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A+ + G ++ F+ A+ FY A NP A N Y N AV+ +
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A+ I P +S++ +G+ + K A +KA+ +P +NL +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 8e-17
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+ D A G ++ ++ A+ Y KA P A +CN Y G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
A+ ER + + P + A M +AL+ L + VAYYKKAL +
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLN-------KHVEAVAYYKKALELDPDNET 115
Query: 302 AMYNLGVAYGEM 313
NL +A ++
Sbjct: 116 YKSNLKIAELKL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 8e-15
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E AE G + E+A+ Y + + ++P + N A A + L
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL------- 59
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
G+ V ++A+ + Y+ A +G+A + K A+ +Y+ A +P +N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 340 LGVIYK 345
L +
Sbjct: 120 LKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-14
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ D A G A Y KA+ +P+ A+ + +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAA 55
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
GN +Q A+ IDP Y+ AY +G+ S L ++ A+ Y+KA P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
Query: 227 AYCNMGVIYKNRGD 240
N+ + +
Sbjct: 116 YKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
++ L G +AA KAI NP A + N Y G+ + A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 423 DAYEQCLKIDPD 434
E+ + IDP
Sbjct: 67 QDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 24/111 (21%), Positives = 36/111 (32%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N F A+ Y +E + N + A A+ +DP
Sbjct: 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ A+ G+ + VEA Y KAL DP + L I L +
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 31/241 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
LG + + A +EKA + N+GV+Y +G +L+ A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305
+ Y + A N+ + + G V + N+ + YY KA YA+ +
Sbjct: 63 SFYAK--ACDLNYSNGCHLLGNLYYS-GQGVSQ--NTNKALQYYSKACDLK--YAEGCAS 115
Query: 306 LGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 357
LG Y G+++ F A+ ++ A N + C LG +Y +L KA+ Y
Sbjct: 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY 173
Query: 358 QMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
A S N G +Y A KA NLG +
Sbjct: 174 DKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229
Query: 414 D 414
+
Sbjct: 230 N 230
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 53/261 (20%), Positives = 86/261 (32%), Gaps = 42/261 (16%)
Query: 178 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 228
+ + +A K D +NLGV+Y + + + A Y KA Y+
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77
Query: 229 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
+G +Y + +G + A+ Y + A + ++ D G V D +
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSK--ACDLKYAEGCASLGGIYHD-GKVV--TRDFKK 132
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEML----KFDMAIVFYELAFHFNPHCAEACNNL 340
V Y+ KA N D LG Y A+ Y+ A + C N
Sbjct: 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNA 188
Query: 341 GVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMI 391
G +Y + N +A+ Y A + NLG + G+ A E
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ-YNGEGVTRNEKQAIENF 245
Query: 392 EKAIAANPTYAEAYNNLGVLY 412
+K A + L L
Sbjct: 246 KKGCKLG--AKGACDILKQLK 264
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 60/293 (20%), Positives = 99/293 (33%), Gaps = 58/293 (19%)
Query: 80 GNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV----- 133
+ + +G G + ++ + A F +A L + G+LY +G+ V
Sbjct: 4 QDPKELVGLGAKSYKEKDFTQ-AKKYFEKACDLK--ENSGCFNLGVLY-YQGQGVEKNLK 59
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DP 188
+AA Y KA D +Y L L G G +Q+ +AL+ D
Sbjct: 60 KAASFYAKA--CDLNYSNGCHLLG-NLYYSGQ-----GVSQN----TNKALQYYSKACDL 107
Query: 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---D 240
YA +LG +Y + + A+ + KA + +G +Y RG D
Sbjct: 108 KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
L+ A+A Y++ A N G + + +A Y KA
Sbjct: 166 LKKALASYDK--ACDLKDSPGCFNAGNMYHH-GEGA--TKNFKEALARYSKACELE--NG 218
Query: 301 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345
+NLG G AI ++ C AC+ L +
Sbjct: 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGACDILKQLKI 265
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 3e-19
Identities = 11/122 (9%), Positives = 38/122 (31%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ + + + ++ +++A ++ + L +Y ++
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442
+ AA++ A A + G + A + +E ++ D + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144
Query: 443 LL 444
Sbjct: 145 SY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-18
Identities = 19/113 (16%), Positives = 40/113 (35%)
Query: 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
A K D +Y+ + + + A VF+ ++ + + L IY+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
++ +A + Y +A ++ N + + G A E E I +
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 1e-17
Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)
Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A+++ + K + + G ++ + D +
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
L +Y Q+ A Y A + G A C+E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 251 CLAVSPNFEIAKNNMA 266
+ S + ++ +
Sbjct: 130 VIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-16
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 7/114 (6%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
+ I Y+ + + + A + + + + IY+ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ A Y A+ N + L + ++ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-------KAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-14
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318
I + M + +G I + +++ Y+++ D + L Y +F
Sbjct: 30 AIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88
Query: 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A Y +AF + + G KA EC+++ + +
Sbjct: 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
SYA ++ + +A + + D NV+ +G Q++ + A D ++ A L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+ H G ++A E + +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 4e-12
Identities = 8/81 (9%), Positives = 24/81 (29%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ +I + + + + +G+++ A + + L +Y+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 415 AGSISLAIDAYEQCLKIDPDS 435
A D Y + +
Sbjct: 83 KEQFQQAADLYAVAFALGKND 103
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-11
Identities = 16/168 (9%), Positives = 38/168 (22%), Gaps = 41/168 (24%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ +I + +++ A + + ++ + A F
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
D N +Y+ + + +AA+ Y
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV---------------------------- 95
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A + + ++ G L A C+E
Sbjct: 96 -------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A I + + +F A LY + + G C A + F ++
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 112 DPQNA 116
Sbjct: 134 SNDEK 138
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 1e-17
Identities = 42/333 (12%), Positives = 84/333 (25%), Gaps = 55/333 (16%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ ++G EA AL P + +A + LG L G + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQ 78
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAY 228
++ + + + TA EKA + PM+
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ L+ A A + V +++ L L GD++ +
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQ 196
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
+ + +H + A + ++
Sbjct: 197 LNRLEN--------------------------LLGNGKYHS-DWISNANKVRVIYWQMTG 229
Query: 349 NLDKAVECYQMAL----SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------N 398
+ A + + N+ + G+ + A ++E+
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289
Query: 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
L LY AG S A LK+
Sbjct: 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 9e-16
Identities = 39/290 (13%), Positives = 84/290 (28%), Gaps = 33/290 (11%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 5 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 62
Query: 276 VKLEGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAF-- 327
+ +G++ + +A ++ + ++ A E AF
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Query: 328 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 376
P + LD+A + + + ++ L L
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182
Query: 377 VYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+G +D A + + + + A + ++ G + A +
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMRLYSQ 474
K + + GQ R +A I G + + E + + +
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 5e-12
Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 63/337 (18%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRL--AFDSFSE 107
A + + +A L ++ LE+ + A G L + G L + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQ 78
Query: 108 AVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
++ + + +G L A E+ KA ++
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-------------FQLINE 125
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---- 217
L P + + + D A
Sbjct: 126 QHLEQL--------------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165
Query: 218 -ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ + + + RGDL++A + R + N + + ++ A
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225
Query: 277 KLEGDINQGVAYYKKALY----YNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------ 326
++ GD + + N N+ A + +F+ A + E
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
L +Y A AL +
Sbjct: 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 23/225 (10%)
Query: 52 LSYANILRSRNKFVDALALYEIVLE--------KDSGNVEAHIGKGICLQMQNMGRLAFD 103
+ + IL ++ A E + + + + L A
Sbjct: 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156
Query: 104 SFSEAVKL-----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
S +++ Q G L A ++ + + K ++ ++
Sbjct: 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCY 214
++ G+ K + + N+ L +++ A
Sbjct: 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276
Query: 215 EKA-----ALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLA 253
E+ +L + +Y G A L
Sbjct: 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 171 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
G + Y +A+ A Y LG + L +Y A + P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 269
++ N G E + + +A + + E I AI
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 350 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+AV Y+ A++ + ++ LG + G+ A ++ + P +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
++ + G ++ + + D
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 206 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A+ YEKA L+ AE Y +G ++ G+ A A + PN + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 263 NNMAIALTDLG---------TKVKLEGDINQGVAYYKKALYYNWHYADA 302
A+ L +LG K+ E ++ + YK+A+ + YAD
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF---YADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 9e-14
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 315 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371
A+ +YE A AE LG ++ KA + PN
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
+V G+ + E++ K IA + Y+ AI Y L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-12
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 280 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
G Q V YY+KA+ A+ LG + + ++ A P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
++ + ++ VE ++ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G +A Y KA+++ K AEC LG++ + G + +K P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +V L +Y+ + K E + AI Y
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI-----------QSYKQAILFYA 108
Query: 250 RCL 252
L
Sbjct: 109 DKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 380 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
V G A EKAIA+ AE Y LG +R G A +K P+ +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 437 NAGQNRLLAMNYINEGHDDK 456
AM N G ++
Sbjct: 62 ALRVF--YAMVLYNLGRYEQ 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 96 NMGRL--AFDSFSEAVKL---DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+G A + +A+ A + G ++ G +A + P+++
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+VL +L G + G++ + + + Y A
Sbjct: 62 ALRVFYAMVLYNL-------GRYEQGVELLLKIIAETSDDE-----------TIQSYKQA 103
Query: 211 LGCYEKA 217
+ Y
Sbjct: 104 ILFYADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 66 DALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHT 120
A+ YE + + E ++G G + +G A + VK P +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTF--RTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYK 150
++ + GR + E K ++ +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 46/246 (18%), Positives = 80/246 (32%), Gaps = 37/246 (15%)
Query: 190 YAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 241
+ LG +YS + + + Y K+A ++ +Y G D
Sbjct: 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDY 239
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIA-LTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ + + + IA+ + L + + + +Y+K+ +
Sbjct: 240 TQSRVLFSQ--SAEQGNSIAQFRLGYILEQGLAGAK----EPLKALEWYRKS--AEQGNS 291
Query: 301 DAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDK 352
D Y L Y + + + AI +Y + A A NLG IY K
Sbjct: 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKK 349
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
AVE ++ A + NLG V+ AA + KA + A L
Sbjct: 350 AVEWFRKA--AAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405
Query: 409 GVLYRD 414
G +Y
Sbjct: 406 GEIYYY 411
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 48/249 (19%), Positives = 79/249 (31%), Gaps = 38/249 (15%)
Query: 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 241
A NLGV+Y E + ++ + AA + +MG Y G D
Sbjct: 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDY 167
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 300
A Y + A + N + + LG + + +Y+K+
Sbjct: 168 VMAREWYSK--AAEQGNVWSCNQLGYMYSRGLGVER----NDAISAQWYRKS--ATSGDE 219
Query: 301 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDK 352
+L Y G + D + V + + + A LG I + K
Sbjct: 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLK 277
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYT-----VQGKMDAAAEMIEKAIAANPTYAEAYNN 407
A+E Y+ + + S L +Y V + A K+ A A N
Sbjct: 278 ALEWYRKS--AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQAN 333
Query: 408 LGVLYRDAG 416
LG +Y G
Sbjct: 334 LGAIYFRLG 342
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 190 YAPAYYNLGVVYSELMQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DL 241
+ Y L +Y + + + A+ Y K+A + A A N+G IY G +
Sbjct: 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEH 347
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 300
+ A+ + + A + + A+ N+ AL G K D Q + +KA +
Sbjct: 348 KKAVEWFRK--AAAKGEKAAQFNLGNALLQGKGVKK----DEQQAAIWMRKAAEQG--LS 399
Query: 301 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DN 349
A LG Y G ++ D A +++ A + I + +
Sbjct: 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM--NLFGTENRNITEKKLTAKQLQQA 457
Query: 350 LDKAVECYQMA 360
+ + +
Sbjct: 458 ELLSQQYIEKY 468
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 20/165 (12%)
Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM- 318
K+ +A+ LT L V L N + K+ A A LG Y G D+
Sbjct: 3 KSLLAVMLTGLFALVSLPALGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLT 60
Query: 319 -AIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNN 373
A+ ++ A A LG+ Y + + + +AV Y+ A Q+ N
Sbjct: 61 QAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQN 116
Query: 374 LGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
LGV+Y V+ + + A ++G Y +
Sbjct: 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFE 159
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + A+AY +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-15
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
AI A+AY +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ V +A A +G E + +Y K+L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A A+A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428
LG + D A + +KA +PT N +Y + G + + E+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 429 LKIDPDSRNAGQNR 442
+++ ++R +
Sbjct: 65 IEVGRENREDYRQI 78
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------------- 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 70 ---------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
Query: 221 RP 222
Sbjct: 109 HR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQN-------ACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N A A+ G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 9e-16
Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 39/224 (17%)
Query: 214 YEKAALERPMYAEAYCNM--GVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIA 268
E P N Y GD L A + SP F A+ A+
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+ + L ++
Sbjct: 243 --------------------DIVRHSQHPLDEKQLAALNTEIDNIVTLPE---------- 272
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
+ + V + D++ + + ++ ++ + LG VY ++G AA
Sbjct: 273 -LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
+ A P Y +++ S+ + ++ L +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 1e-15
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDNLDKAVECYQMALSIK-- 364
+ A +P A ++ D L +++
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
N S V V+GK D + + I I ++ Y LG +Y G A DA
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332
Query: 425 YEQCLKIDPD 434
Y + P
Sbjct: 333 YLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-15
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 9/169 (5%)
Query: 99 RLAFDSFSEAVKLDPQNACAHT-----HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
K+ P T H +L+ D+ L A+E + + + P + A
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+V + L + + L + + Y V + D +
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
++ M Y +G +Y+ +G A Y + P
Sbjct: 297 YQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-11
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 366
+ L E PH N +++ D +L++A E + P
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231
Query: 367 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 416
F+ + +V V + ++ A I+ + + Y V G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 417 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
+ A + ++ N LL Y +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-15
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ H NP A N G + + +A++ Y A+ P ++ +N YT
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ A + E+ I PT+ + Y + A+D Y++ L +D + A
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
+H +P LA+++ + G G+ ++ Y EA+K +P A Y N
Sbjct: 3 HHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 55
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Y++L+++ AL E+ P + + Y + D A+ Y++ L +
Sbjct: 56 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Query: 257 NFEIAKNNMAIAL 269
+ + A + +
Sbjct: 116 SCKEAADGYQRCM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-11
Identities = 20/121 (16%), Positives = 43/121 (35%)
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
++ + N A + N G + + A+ Y A NP A+ +N Y
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
A++ + + ++P F + A ++ +KA+ + + EA +
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 408 L 408
Sbjct: 124 Y 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + P A N G +GD A+ Y + +P +N A T L
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL- 63
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ + ++ + + A M + A+ Y+ A + C
Sbjct: 64 ------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
Query: 334 AEACNNLGVIYKDRDN 349
EA + + N
Sbjct: 118 KEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 5e-06
Identities = 20/101 (19%), Positives = 40/101 (39%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y ++++ + + + + C +LA E ++L+P
Sbjct: 24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+T + +A + Y KAL D S K AA+
Sbjct: 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + P+ + + N G +G A + +AI NP A+ Y+N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 415 AGSISLAIDAYEQCLKIDPD 434
LA+ E+C++++P
Sbjct: 63 LLEFQLALKDCEECIQLEPT 82
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 9e-15
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
++ + G R KA++ Y ALSI P L+N Y+ G+ + AAE E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A +P Y++A++ LG+ D A +AYE+ ++ + + + R L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
S P E + L G + I Y +AL I P N YS
Sbjct: 1 GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Q++ A E A + P Y++A+ +G+ + D + A YE+ + N
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 265 MAIA 268
+
Sbjct: 119 RGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 25/111 (22%), Positives = 41/111 (36%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+D + + G A ++ AI Y A P +N Y +KA E ++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A + P +S++ + LG+ A E EK I A G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
+ L G + ++ + Y +AL + N AY + + A EL
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A +P ++A + LG+ D + A E Y+ + + N G + T + K++
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIE 129
Query: 386 AAAEMIEKAIAANPTYAEAYNNLG 409
A E A A G
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAG 153
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
+ + G +Y A+ Y +A P N Y G E A E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V P + A + + +A D+ D Y+K + + G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDM-------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 20/98 (20%), Positives = 35/98 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N +R ++ A+ LY L N + A + A +DP+
Sbjct: 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
+ A + G+ D A E+Y K + A+ + A
Sbjct: 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 52/334 (15%), Positives = 99/334 (29%), Gaps = 63/334 (18%)
Query: 114 QNACAHTHCGILYKDEGR---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
A +LY+ +G ++ E KA A + LA V
Sbjct: 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQK-------- 188
Query: 171 GNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVY------SELMQYDTALGCYEKAAL 219
+ ++ E LK A V TA EK A
Sbjct: 189 ---KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244
Query: 220 ERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
P Y ++ ++ + + D+E + + + + A+ + + G V
Sbjct: 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN--GRAADQPRAELLLGKLYYE-GKWV 299
Query: 277 KLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAY--GEMLKFDM--AIVFYELAFH 328
D A+++KA A Y LG Y G + K A+ A
Sbjct: 300 PA--DAKAAEAHFEKA-------VGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350
Query: 329 FNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYT--VQG 382
A + ++ + A Q+A + ++ + +
Sbjct: 351 NG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA--KAQDTPEANDLATQLEAPLTPA 406
Query: 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
+ ++++ +AA T A++ L L + G
Sbjct: 407 QRAEGQRLVQQELAARGTLAQSTLQLHALQEEDG 440
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 39/235 (16%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263
TA Y++ A Y+EA + I ++ A A Y A +
Sbjct: 19 TVTAQQNYQQLA--ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRA----------AAD 66
Query: 264 NMAIALTDLGT-----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEML 314
A LG E + ++ + KKA + + + L + Y
Sbjct: 67 TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHSFP 124
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSL 371
+ + EA ++Y+ + D VE A
Sbjct: 125 NVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICY 179
Query: 372 NNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
L VY + + + +E + A V + D
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPD 232
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 32/244 (13%)
Query: 190 YAPAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLE 242
Y+ A L + +AA + A +G + + +
Sbjct: 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A + ++ A + +A+ ++N + +A
Sbjct: 92 EAESLLKK--AFANGEGNTLIPLAMLYLQ-YPHSFP--NVNAQQQISQWQAAGY---PEA 143
Query: 303 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQ 358
+ Y + + L +Y + + + ++ +
Sbjct: 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203
Query: 359 MALSIKPNFSQSLNNLGVVYT----VQGKMD--AAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ + V G D A ++EK P ++ +L L
Sbjct: 204 AGV--SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLL 258
Query: 413 RDAG 416
D
Sbjct: 259 YDFP 262
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 20/201 (9%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVF 322
+ L + GD Y++ Y++A L + + A
Sbjct: 3 GLPDQRLANEALKRGDTVTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQAEAT 60
Query: 323 YELAFHFNPHCAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y A A LG + +A + A +L L ++
Sbjct: 61 YRAA---ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAML 115
Query: 378 YTVQGKM---DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Y A + I + AA Y EA +LYR G+ +D E+ K +
Sbjct: 116 YLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN 173
Query: 435 SRNAGQNRLLAMNYINEGHDD 455
+ + L + + +
Sbjct: 174 TTDICYVELATVYQKKQQPEQ 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-14
Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 35/223 (15%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
Y++ A A + + + GD + A ++ A AL
Sbjct: 5 PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53
Query: 270 TDLGT---KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIVF 322
L + + D Q +KA+ L + AI
Sbjct: 54 ALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITL 111
Query: 323 YELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGV 376
+ A + +A LG+IY ++ KA E ++ + S + G+
Sbjct: 112 LQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGM 170
Query: 377 VY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
++ ++ A + + + + +
Sbjct: 171 MFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 23/186 (12%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 246
A Y L + Y A +KAA + +A + + D A
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA--LYYNWHYADAMY 304
E+ AV + + +A L + D+ + + A + DA
Sbjct: 75 LAEK--AVEAGSKSGEIVLARVLVN-RQAGAT--DVAHAITLLQDAARDSESDAAVDAQM 129
Query: 305 NLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD------RDNLDKAV 354
LG+ Y G A +++ + A G++++ N KA+
Sbjct: 130 LLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188
Query: 355 ECYQMA 360
++
Sbjct: 189 HWLNVS 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 22/169 (13%)
Query: 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFD 317
A+ A L GD + + +KA DA+ L + +
Sbjct: 13 AEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAA--AQGDGDALALLAQLKIRNPQQADYP 70
Query: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMA----LSIKPNFSQ 369
A E A L + + ++ A+ Q A S +Q
Sbjct: 71 QARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ 128
Query: 370 SLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
LG++Y A+E + + ++ A G++++
Sbjct: 129 --MLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQ 174
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 31/175 (17%)
Query: 190 YAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLE 242
A L + Y A EKA + + N + D+
Sbjct: 49 DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVA 106
Query: 243 SAIACYER--CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300
AI + + S A+ + + G D + Y+K + +
Sbjct: 107 HAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPE--DDVKASEYFKGSSSLS-RTG 162
Query: 301 DAMYNLGVAY----GEMLKFDM--AIVFYELAFHFNPHC----AEACNNLGVIYK 345
A Y G+ + ++ + A+ + ++ C C I K
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS------CLEGFDTGCEEFDRISK 211
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 9e-14
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 65/286 (22%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQ------------------ 67
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH- 332
K + + A+ E A H
Sbjct: 68 -----------------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 333 -----CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 380
A LG I D + KA++CY++A ++ + +
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170
Query: 381 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
G+ A+++ K I + + + + G+ A A ++ DP
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
Query: 434 DSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 477
+ ++ ++ L ++ +NEG ++L E +++ FMRL +
Sbjct: 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+Y+ L A +S+ KA E + K GN+ + +
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 183 ALKIDPHY------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYC 229
A++I H A + LG + ++L Y A+ CYE A + + +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ G A Y + + S +++ ++ G D
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 290 KKAL 293
++
Sbjct: 223 QEGQ 226
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 21/191 (10%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSL-KLAGNTQDGIQKYYEALKI------DPHYAPAYY 195
+ A +LG L + I Y A + +
Sbjct: 104 IQIFTHRGQFRRG-ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 196 NLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACY 248
+ + QY A Y K L + + + G+ D +A
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222
Query: 249 ERCLAVSPNFE 259
+ + PNF
Sbjct: 223 QEGQSEDPNFA 233
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 3e-13
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+P + + Y + E A YE L N K +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 8e-11
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
N+D A++CY A+ + P+ +N Y +G A E K + P + + Y+
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
A YE+ LK + ++
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-07
Identities = 17/109 (15%), Positives = 36/109 (33%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+ +KP++ + + + + A E+ + + L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-05
Identities = 18/100 (18%), Positives = 35/100 (35%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
S DAL Y ++ D N + + + + A++ + V L P +
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ + R EA +Y + L + + E L +
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + A GD +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-------GDYQK 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
K + + A + +F+ A YE + + L
Sbjct: 57 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 20/112 (17%), Positives = 35/112 (31%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE G Y + + AV+ Y + P ++ +N A K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
AI +P + AY + A++ + D + N R +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 9e-13
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L G + ++ Y E +K P A Y N ++LM + A+ KA
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ P + AY + SA+ + + I
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 16/111 (14%), Positives = 33/111 (29%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+ G Y + A+ Y P A +N + +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
A+ PNF ++ + +A E ++ A + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ A ++Y + + P A ++ +L + + I +A++ DP
Sbjct: 17 KSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ AY + +Y +AL + A + +
Sbjct: 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
M AE G Y + D +A+ Y + +P +N A AL L
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-------MSF 54
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
+ +A KA+ + ++ A A + ++ A+ + A + + +
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+ A+ Y + P A Y N AIA + + PNF A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
A A + + + A + + +
Sbjct: 79 ATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 13/104 (12%), Positives = 34/104 (32%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+++ + +A+ Y ++++ + + + L A ++A++ DP
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A+ A E+ A + D + I
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-12
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 162 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
+L K GN ++ Y EA+K DP A Y N ++LM++ AL
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ + + Y + A YE L V P+ E A+ +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 24/114 (21%), Positives = 42/114 (36%)
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
+ NP A+ N G Y + + A+ Y A+ P + +N T + A
Sbjct: 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRA 66
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ + I + + + Y S A AYE L++DP + A +
Sbjct: 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350
+ Y N A N G Y + + A+ Y A +P A +N
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A++ + + F + + A E A+ +P+ EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ A P A+ N G Y +GD +A+ Y + P I +N A LT L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ + + + + + M ++ A YE A +P
Sbjct: 61 -----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 335 EACNNL 340
EA +
Sbjct: 116 EAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 20/104 (19%), Positives = 37/104 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y +++D N + + CL + A D ++LD +
Sbjct: 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ +A +Y AL DPS + A E +
Sbjct: 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 7e-12
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
Y + Y G +A+ YE + V P+ + AK
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 18/106 (16%), Positives = 38/106 (35%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410
+ A++ Y A+ + P+ + N + Y A +AI + Y + Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456
G A+ YE +K+ P ++A + + ++
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
E A AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-- 60
Query: 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ +A+ + Y Y + + KF A+ YE PH
Sbjct: 61 -----ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Query: 335 EACNNLGVIYK--DRDNLDKAVECYQMALSI 363
+A K + ++A+ + S+
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y+ A+ Y +A P A Y N + Y A+ R + + +
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
A + L G + Y+ +
Sbjct: 88 AASNMAL-------GKFRAALRDYETVV 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 5/130 (3%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
D + +Y +A+ N A N +AY + A+ A + +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
A+ Y+ + +KP+ + + + E+AIA +
Sbjct: 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ERAIAGD 140
Query: 399 PTYAEAYNNL 408
++L
Sbjct: 141 EHKRSVVDSL 150
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 7e-12
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 381 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439
QG ++ A + +E+ + P EAY +G YR G A++ Y+ ++++PDS
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 440 QNRLL--AMNYINEGHDDKLFEAH 461
+++ +N+ N+ ++L H
Sbjct: 73 ARKMVMDILNFYNKDMYNQLEHHH 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-11
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ AL E+ P+ EAY MG Y+ GD + A+ Y+ +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 253 AVSPNFEIAKNN 264
++P+ +
Sbjct: 63 ELNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ ++ +Q E L+ +P AYY +G Y +L + AL Y+ A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
P R + + Y
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-10
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
++ +++ A++ + L +P ++ +G Y G A + AI
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 398 NPTYAEAYNN 407
NP
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 358
+ N G + A+ E P EA +G Y+ + KA+ YQ
Sbjct: 7 IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 359 MALSIKPNF 367
A+ + P+
Sbjct: 60 SAIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-06
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
+GDI + ++ L +A Y +G AY ++ + A+ Y+ A NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71
Query: 338 NNLGVIYKDRDNLDKAVECYQ 358
+ R + + Y
Sbjct: 72 -------QARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-06
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEA 108
D L L ++ +AL E L+ + EA+ G + + A +++ A
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
++L+P + +++ Y+K +
Sbjct: 62 IELNPDSPALQAR--------KMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 93 QMQNMGRL--AFDSFSEAVKLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
++ N G + A + E ++ +P A+ G Y+ G +A +Y A+ +P
Sbjct: 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
Query: 150 KPA 152
Sbjct: 69 PAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
N+GD+E+A+ E L P + A M A LG D + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-------DWQKALNN 57
Query: 289 YKKALYYNWHYADA 302
Y+ A+ N
Sbjct: 58 YQSAIELNPDSPAL 71
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 1e-11
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+ + LG +T ++ + + +LG + Q A Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A P + Y + ++ ++GD + I Y R +AV F A N+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 58.1 bits (139), Expect = 4e-09
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
C +LG I + R+ +A Y+ A + P+ Q N L ++ + +G
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
++IA + A NL A E K + Y+++
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265
Query: 453 HDD 455
+
Sbjct: 266 LEK 268
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 1e-08
Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 7/186 (3%)
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ + LG + + V + Y + + +LG + A +Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 386
P + N L ++ + + + Y ++++K F + NL + K
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS---KALE 235
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
+ + ++ + G +Y +S + E+ K + +L+
Sbjct: 236 SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLV 295
Query: 445 AMNYIN 450
+ IN
Sbjct: 296 HVTVIN 301
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 9e-07
Identities = 18/132 (13%), Positives = 37/132 (28%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K + + + H + P + L LG + T Y A ++
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P Y L ++ S + T + Y ++ + + A N+ + +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 247 CYERCLAVSPNF 258
F
Sbjct: 242 TKWGVSDFIKAF 253
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 3e-04
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 15/183 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
G + +N A + A +L P N + IL +G + Y ++++
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207
+ PAA + T+ G+ + +A + L +L
Sbjct: 219 F-PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI----KFHGHVYLSKSLEKLSPLR 273
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ +++ ++ ++ ++ VI + S E +
Sbjct: 274 EKLEEQFKELLFQKAFNSQQLVHVTVI---------NLFQLHHLRDFSNETEQHTYSQDE 324
Query: 268 ALT 270
L
Sbjct: 325 QLC 327
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 19/114 (16%), Positives = 40/114 (35%)
Query: 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
+A CY A++ P + N + Y + + A +A+ + +A+ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
G + S AI ++ + + R + + + I + E R
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-10
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A+ +G + AIA +R +++
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+ EAA Y +A++ +P +A+ T+ + + AL++D
Sbjct: 22 GRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A++ LG E+ YD A+ ++A
Sbjct: 75 QSVKAHFFLGQCQLEMESYDEAIANLQRA 103
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANP 399
G D A +++A +
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 84 GQCQLEM-------ESYDEAIANLQRAY 104
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPN 366
LG + ++ D+A+ Q A S+
Sbjct: 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ A+ G A ACY R + +P + N A+ +
Sbjct: 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM------- 56
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
Q +A ++AL + A + LG EM +D AI + A+
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N L K+ +A A Y + ++ + + +C A A++LD Q+
Sbjct: 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
AH G + EA + +A S +
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 3e-10
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ R +A CY A++ P + N + Y + + A +A+ + +
Sbjct: 15 FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 463
A+ LG + S AI ++ + + R + + + I + E R
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133
Query: 464 WGKRFMRLYSQ 474
+ + Y
Sbjct: 134 HQESELHSYLT 144
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ Y A+ +P A Y N + Y ++ Q + AL +A +A+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPN 257
+G + AIA +R +++
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
G D A +++A + +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A+ G A ACY R + +P + N A+ + Q
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-------QQPEQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
+A ++AL + A + LG EM +D AI + A+
Sbjct: 57 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 19/103 (18%), Positives = 34/103 (33%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
+ AH G + EA + +A S +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
++ ++ +A ++A
Sbjct: 79 GQCQLEM-------ESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 18/94 (19%), Positives = 35/94 (37%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
LG + ++ D+A+ Q A S+ +
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 8e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 349 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
+ A+ Y AL + N + D A KAI + +A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
G + A+ ++C+ ++P ++
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 170 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G+ + Y +AL +D A + N + +L YD A KA + +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A + G L+ A+ +RC+++ P ++ + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
G A +Y +AL D + + A A LKL + + +A++
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEASKAIE 93
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
D A Y +L + D A+ ++
Sbjct: 94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTD 271
+ A E G GD A+A Y + L + + + N A
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC--- 74
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+KL D ++ KA+ + A+Y A ++ + D A++ + P
Sbjct: 75 ---HLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Query: 332 HCAEACNNL 340
L
Sbjct: 131 KNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 367
+ A+ Y A + + V++++R ++ DKA A+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
++L G++D A +++ ++ P L
Sbjct: 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G ++ + Y + + P Y N + +L +Y A+ ++
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76
Query: 230 NMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 264
+ Y+ + A+ + + V E +
Sbjct: 77 RSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
E G + +AV CY ++ +P +N + G+ A +M ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 441
+ T + YR A+ + + + +D ++
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-07
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTSLKLAGNTQDGIQKY 180
L+K +G EA Y + ++A P A L +KL G IQ
Sbjct: 14 LFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMAL----------IKL-GEYTQAIQMC 61
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ L+ + Y L A+G + +E E Y
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y A+ CY++ +P Y N + G+ AI ++ L + E
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ L G + V +
Sbjct: 79 KLQYR-LELAQGAVGSVQIPVVEVDELP 105
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ G + + + A+ Y+ P +N + +A++ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407
L + Y A ++ + E Y+
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
E G +G A+ CY++ + P + +N A+AL L G+ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-------GEYTQ 56
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 326
+ ++ L Y + Y + A+ ++
Sbjct: 57 AIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIP 97
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 7e-09
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 359
+ +L F+ E + NP A+ G + + + + +A+ ++
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 408
AL I P +++ +G YT + D A + ++A+ P +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 409 GVLYRD 414
+ +
Sbjct: 132 EMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-08
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD---INQGVAYYKKALYYNWH 298
E E +P L +L + I + + +++AL +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+A++ +G AY AF P EA + N D A + +Q
Sbjct: 79 KDEAVWCIGNAY------------TSFAF-LTPDETEA----------KHNFDLATQFFQ 115
Query: 359 MALSIKPNFSQSLNNLGV 376
A+ +P+ + L +L +
Sbjct: 116 QAVDEQPDNTHYLKSLEM 133
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 400
++ + + P + +L G V + + ++ E+A+ +P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 401 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 435
EA +G Y + LA ++Q + PD+
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-07
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 126 YKDEGRLV---EAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQK 179
+ R++ + + ++P VL +L + Q+ I K
Sbjct: 9 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 228
+ EAL IDP A + +G Y+ +D A +++A E+P
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 229 CNMGVIYK 236
++ + K
Sbjct: 129 KSLEMTAK 136
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNT 173
+H H E + A+ + + E + + G
Sbjct: 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEI 54
Query: 174 QDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217
+ I KY EAL H NL Y++ Y A+ K
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+A +GV G LE A + +++PN +N+ +
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 392
+++A+ Y+ AL + + NL Y A +
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
K + + +A LGV G + A + + ++P++ +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 238 RGDLESAIACYERCLAVSPNFEIAK----------------NNMAIALTDLGTKVKLEGD 281
+ ++ AI Y+ L + E N+A K + D
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNK-D 103
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ + + K L + + A+Y LGVA + A A NP+ + N+
Sbjct: 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163
Query: 342 VI---YKDRDNLDKAV 354
+ K+ DK
Sbjct: 164 LCVNKLKEARKKDKLT 179
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 342
++ + Y + + + ++ I+ + + N +
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 395
IY + L K ++ ++ L + N + + + + + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 396 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ + Y G R I+ +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 6e-07
Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCN 230
K E + Y + + + Y+ + +K ++
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290
+ IY G L+ I +E+ L + + + L+ + +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 291 KAL------YYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHF 329
KA+ Y G ++ + Y+ A F
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
+Y + G L + + + + L + E V + +L L ++ +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 178 QKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ +A++I YY G +L + + K A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 34/219 (15%)
Query: 78 DSGNVEAHIGKG----------ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
D + IG+G +Q G + V L P A
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSI------VYLKPSYAFGSVGKEKFQI 114
Query: 128 DEGRLVEA-AESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEAL 184
++ + + + E L + GT G + + +Y + +
Sbjct: 115 PPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
Query: 185 KIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ ++ NL + + +L + A+ KA +
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
G + D E A A +++ L + PN + AK +A+
Sbjct: 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 368
+ F+ A +E+ + G +Y +A+ Y+ +S + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 369 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
NL + + AA E KA+ + + + G +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 417 SISLAIDAYEQCLKIDPDSRNA 438
LA +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L ++ A +E + E+ + G +Y G + A+ Y++ ++
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYK------------KALYYNWHYADAMYNLGVAY 310
N A L L N + + K KAL + + + G A+
Sbjct: 185 NEEAQKAQALRLASHL----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 354
+ F++A ++ P+ A L V + + +K +
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-06
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
A+ Y KA ++ + + + + A N +
Sbjct: 11 LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--ACELNSGNGCRFLG 64
Query: 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVF 322
+ G VK D+ + YY KA N D LG G+ + + A+
Sbjct: 65 DFY-ENGKYVKK--DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKT 119
Query: 323 YELAFHFNPHC----AEACNNLG 341
+E A C +AC L
Sbjct: 120 FEKA------CRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-05
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 388
C +L + N K + A + N LG Y GK + AA
Sbjct: 27 MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81
Query: 389 EMIEKAIAANPTYAEAYNNLGVLYRD 414
+ KA + LG
Sbjct: 82 QYYSKA--CGLNDQDGCLILGYKQYA 105
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L + L + + AL + + + ++ + + K CL LA + +
Sbjct: 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
N+ + + + + L+A+P A +L
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA-------CELAVQ 117
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
G ++ ++ + LK++ G V M +ALG
Sbjct: 118 YNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALG 158
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + + + A+ + + + + A E
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
+ S + Q + +E+ +AANP E L V Y G
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
Query: 420 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 446
A++ LK++ + + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-06
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 40/153 (26%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
G EAA + +A+ + P EA
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPP-----------------------------EEAFDHA 53
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYCNMGVIYK 236
A + L + L +D AL +KA E A + +
Sbjct: 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
G A+ +++ + + + +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
Y + Y G +A+ YE + V P+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 21/105 (20%), Positives = 38/105 (36%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AI + Y + Y G A+ YE +K+ P ++A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 367
+ F+ A +E+ A G +Y +AV Y +S +
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 368 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
S+ NL + Y + A E +KA+ + + G
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 416 GSISLAIDAYEQCLKIDPDSRNA 438
A +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 199
A ++ + GT G + +Y + + A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
Y +L +Y A+ C +KA + G + ESA +E+ L V+P +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 260 IAKNNMAI 267
A+ +++
Sbjct: 386 AARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDL 163
+ A G +Y G+ ++A Y K +S ++ K + L +L
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 164 G-TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LKL ++ +AL +D Y G + ++++A G +EK
Sbjct: 324 AMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 33/241 (13%), Positives = 59/241 (24%), Gaps = 26/241 (10%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ D F+E D A + + A + + + I +
Sbjct: 25 SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------SGSVQISM 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ L + + G D L I +A G Y A+ E A +
Sbjct: 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-------NYADAMEALEAAPVA 131
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKVKL 278
+ A+ V+Y I + F A +A +L
Sbjct: 132 GSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL---- 186
Query: 279 EGDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
+ +A + L +A A+ E +P
Sbjct: 187 ---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKV 243
Query: 336 A 336
A
Sbjct: 244 A 244
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A V + ++ A+ G + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204
Query: 360 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
A++ F N+ + D A +
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
+A G + G + A D + + K PD +
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 197
A G SL ++ +Q+Y A+ P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+L +YD A+G E +A G G ++SA + + +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 258 FEIAKNNMAIA 268
+ + +
Sbjct: 297 DKAIRRELRAL 307
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 6e-05
Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 36/220 (16%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ E Y G E A ER + +S +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL------------- 248
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
+ +Y M V YG++ + F+
Sbjct: 249 ----------------------SLYYGLVMDEEAV-YGDLKRKYSMGEAESAEKVFSKEL 285
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
N + L+ + + + + + Y G +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ +P + G A +++ K
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR 385
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 24/133 (18%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
L+ + EA ++Y AL+ +L E +
Sbjct: 21 LFV-QKDYKEAIDAYRDALT-----------------------RLDTLILREKPGEPEWV 56
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
++D P Y N+ Y + A + +A L+ A
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
Query: 245 IACYERCLAVSPN 257
+ L P
Sbjct: 117 EEDLKLLLRNHPA 129
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 349 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 390
+ +A++ Y+ AL+ N+ Y G + A E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443
+ + T +A A + A + + L+ P + + +
Sbjct: 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 441 N 441
Sbjct: 70 Q 70
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 10/210 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY-------Y 289
+ + YE+CL V + A L + +GD+N + Y
Sbjct: 28 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87
Query: 290 KKALYYNWHYADAMYNLGVAYGEML-KFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDR 347
++A+ +Y Y E K++ ++ L + +
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 348 DNLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
+ + ++ A + + + Y A ++ E + E
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436
+ +E+ L
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-04
Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAA-------ESYHKALSADPSYKPAAECLAIVLTDLGT 165
P C CG L + + + + + D ++ L ++G
Sbjct: 172 PAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGN 231
Query: 166 SLKLAGNTQDGIQKYYEAL----------------KIDPHYAPAYYNLGVVYSELMQYDT 209
+ + N + I+KY + L K+ P N+G ++ +
Sbjct: 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQG 291
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
A+ +A P +A ++ + + A+A ++ ++P
Sbjct: 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.92 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 99.91 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.89 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.88 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.88 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.62 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.6 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.58 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.41 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.38 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.03 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.02 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.47 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.24 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.24 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.16 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.94 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.77 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.33 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.23 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.1 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.08 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.94 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.85 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.53 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.37 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.13 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.5 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.91 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.89 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.87 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.68 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.93 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.39 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.33 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.12 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.79 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.57 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.6 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=456.87 Aligned_cols=324 Identities=23% Similarity=0.340 Sum_probs=274.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+.++..+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566666777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
.+|++++|+++|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhh----HHHHhhhccCCCcHHHHHHHHHHHHHHHh----h-ccccCCCCCCCCCCCCeEEEEecCC
Q 007634 426 EQCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPD 496 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~igy~s~d 496 (595)
++++++.|+....... ....+.+.. +.........+++..... . .++...+...+.++++|||||||+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPL--SHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCC--CHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhc--CHHHHHHHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 9999998765432110 001111111 111111122233322211 1 1112222334557899999999999
Q ss_pred cccchHHHhhhhhhcccCCCceEEEEeeCCcc-CChhhHHHHHHhhhcCCceeeCCCC-CHHHHHHHHHhCCCcEEEeCC
Q 007634 497 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 574 (595)
Q Consensus 497 ~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~ 574 (595)
|++|||++|+.+++++||+++|||++|+.+++ .|..+.+++..+ ++|+++.++ +|.++|++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHS----SEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhh----ccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998865 466787777766 899999998 799999999999999999999
Q ss_pred CCCCCChhhhhhcCCCCcccC
Q 007634 575 GHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 575 g~t~~~~~~~~a~r~APvq~~ 595 (595)
|||.++|++||++||||||||
T Consensus 323 g~t~~~r~~i~a~r~APvQv~ 343 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAM 343 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEE
T ss_pred CCCCCCcchhhhcCCCCceee
Confidence 999999999999999999996
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=369.02 Aligned_cols=379 Identities=27% Similarity=0.381 Sum_probs=363.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (595)
+.+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 132 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 211 (595)
+++|+..|++++..+|++... +..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998776 7778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 007634 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (595)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (595)
..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++...+.. +|.++...|++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-------LGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765554 45555567899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
++...|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++..|.+..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..++.++..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877644
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=343.10 Aligned_cols=359 Identities=26% Similarity=0.379 Sum_probs=343.7
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+...+..++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999998776 677888888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++...+..++ .++...|++++
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-------~~~~~~g~~~~ 255 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA-------CVYYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH-------HHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999876655554 44555789999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
|++..++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=342.96 Aligned_cols=387 Identities=16% Similarity=0.118 Sum_probs=356.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++..|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------------------------------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------- 156 (595)
...|++++|+..|++++...|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999988543321110
Q ss_pred ----------------------HHHHHHhHHHHHH---hCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 007634 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (595)
Q Consensus 157 ----------------------a~~~~~l~~~~~~---~~~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~l 197 (595)
...+..+|.++.. .|++++|+..|+++++ . + |..+.++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 4445666776665 8999999999999999 5 3 4457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+...+..++. ++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ-------MNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH-------HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH-------HHH
Confidence 99999999999999999999999999 9999999999999999999999999999999998776555544 455
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCHH------HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 358 QMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 358 ~~al~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+++++..|++.. ++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++|...|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888855 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhhhhhH
Q 007634 429 LKIDPDSRNAGQNR 442 (595)
Q Consensus 429 l~~~p~~~~~~~~~ 442 (595)
++++|+++.++...
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999998887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=335.89 Aligned_cols=386 Identities=16% Similarity=0.149 Sum_probs=336.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHH---------------------------------------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAEC--------------------------------------------------- 155 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--------------------------------------------------- 155 (595)
...|++++|+..|+ ++...|+.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999996 77777764432110
Q ss_pred -------------HHHHHHH-----hHHHHHHhCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 007634 156 -------------LAIVLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 156 -------------~a~~~~~-----l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A 210 (595)
+...+.. .+......|++++|+..|+++++.+|+++. ++..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 0011111 133334456899999999999999999865 577888999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (595)
+..++++++.+|. ..++..+|.++...|++++|+..++++++..|++...+..++. ++...|++++|+..++
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ-------MYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH-------HHHhcCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999998776555544 4455789999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-
Q 007634 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ- 369 (595)
Q Consensus 291 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~- 369 (595)
+++...|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++..
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred -----HHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 370 -----SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 370 -----~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+..+|.++... |++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 356678899999 99999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhh
Q 007634 435 SRNAGQN 441 (595)
Q Consensus 435 ~~~~~~~ 441 (595)
+......
T Consensus 495 ~~~~~~~ 501 (537)
T 3fp2_A 495 MDEKLQA 501 (537)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 8877543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=332.73 Aligned_cols=389 Identities=17% Similarity=0.145 Sum_probs=298.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (595)
.+...+...+..+...|++++|+.+|++++...|++ ..++.+|.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 456667788888888888888888888888777743 5556677777777777777666665521
Q ss_pred ---------------cCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..|.. ..++..+|.+|...|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 77899999999999999999999999999999877664433
Q ss_pred H----------------------------------------------------------------HHHHHhHHHHHHhCC
Q 007634 157 A----------------------------------------------------------------IVLTDLGTSLKLAGN 172 (595)
Q Consensus 157 a----------------------------------------------------------------~~~~~l~~~~~~~~~ 172 (595)
+ .++..++..+...|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 2 234456777777788
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
+++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|++++|+.+|++++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888888888777777777777788888888888888888888877778778888888888888888888888888888
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
+..|.+...+..++.+ +...|++++|++.|+++++..|++..++..+|.++...|++++|+..|+++++..|.
T Consensus 401 ~~~~~~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHS-------FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHCTTCHHHHHHHHHH-------HHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777776555444443 344568888888888888888877788888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++.++..+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 8888888888888888888888888888776 4544 66778888888888888888888888888888878888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
..+|.+|...|++++|.++|+++++++|+++.++..+
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 8888888888888888888888888888877666553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=317.08 Aligned_cols=334 Identities=16% Similarity=0.180 Sum_probs=283.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH-----HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~-----~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.++...|++++|+..|++++...|++. ..+..++.+ +..+|.++...|++++|+..|+++++..|.+..++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999988 776665554 667788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH-----HH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA-----LT 270 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~ 270 (595)
.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+..+ ..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988765544221 23
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+|..+...|++++|+..|++++...|.++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3455566666777777777777777776633 566667777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
.|++++|+..|+++++++|+++.++..++.+
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7777777777777777777777666666643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=321.73 Aligned_cols=371 Identities=17% Similarity=0.083 Sum_probs=301.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL--- 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~--- 156 (595)
.+...+..++..+...|++++|+..|++++...|+. ..+..+|.++...|++++|+..|++++.. |.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467788999999999999999999999999999955 67788999999999999999999887544 2333322222
Q ss_pred ----------------------------------------HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH--
Q 007634 157 ----------------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY-- 194 (595)
Q Consensus 157 ----------------------------------------a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-- 194 (595)
..++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 34577788999999999999999999999888755543
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHcC
Q 007634 195 ---------------------------------------------------------------------YNLGVVYSELM 205 (595)
Q Consensus 195 ---------------------------------------------------------------------~~la~~~~~~g 205 (595)
..++.++...|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 44455555566
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|++...+ ..++..+...|++++|
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW-------LAVGIYYLCVNKISEA 392 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH-------HHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH-------HHHHHHHHHhccHHHH
Confidence 666666666666666666666666666666666666666666666666666554443 4455556667899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+..|+++++..|.+..++..++.++...|++++|+..|+++++..|++..++..+|.++...|++++|+++|+++++..|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.++.++..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..|+++++++|++..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999988 6664 7899999999999999999999999999999998877
Q ss_pred hhhHHHHhhhccCCCcHHHHHHH
Q 007634 439 GQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
+..+ +..|...|+.+++.+..
T Consensus 553 ~~~l--~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 553 HTAI--ALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHH--HHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHHHHHhCCHHHHHHHH
Confidence 7654 55666777776665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=312.08 Aligned_cols=359 Identities=17% Similarity=0.150 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 143 (595)
...+...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHH
Q 007634 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYD 208 (595)
Q Consensus 144 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l------------a~~~~~~g~~~ 208 (595)
+.+|++..+ +..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|+++
T Consensus 88 ~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 88 QLKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999998766 77888888999999999999999999999988 776655 66699999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 007634 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (595)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (595)
+|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|.+...+..++.++ ...|++++|+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~ 233 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY-------YQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHH-------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876655555544 456899999999
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHH
Q 007634 289 YKKALYYNWHYADAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDK 352 (595)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~ 352 (595)
+++++...|++...+..+ |.++...|++++|+..|+++++..|.++ ..+..+|.++...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999887666 9999999999999999999999999985 478999999999999999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcC----
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG---- 416 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g---- 416 (595)
|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+ |..+|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999954 44555
Q ss_pred -CHHHHHHHHHH-HHhcCCCCh
Q 007634 417 -SISLAIDAYEQ-CLKIDPDSR 436 (595)
Q Consensus 417 -~~~~A~~~~~~-al~~~p~~~ 436 (595)
+.+++.+.|++ +++.+|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 56778888886 888888764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=292.63 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=293.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77777655532 2455688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999876543322211
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~ 354 (595)
.......+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+
T Consensus 233 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 233 --------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1233455677777777777777777777777777653 3556777888888888888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
.+++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88888888888788888888888888888888888888888888888777777777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=285.42 Aligned_cols=329 Identities=16% Similarity=0.129 Sum_probs=299.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999998766 7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------GVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++..|.++
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 7888888899999999999999999999 888888777 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 305 (595)
.++..+|.++...|++++|+..+++++...|.+...+..++.++ ...|++++|+..++++++..|++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY-------YQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 99999999999999999999999999999999887665555554 44679999999999999999999886655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHHHHHHHhc
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQ 381 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~ 381 (595)
+..+. .......+|.++...|++++|+..++++++..|++.. ++..+|.++...
T Consensus 228 ~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 228 YKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 44332 1345567799999999999999999999999999874 466799999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (595)
|++++|+..++++++.+|+++.++..+|.++...|++++|..+|+++++++|++..++..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=304.09 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=331.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-----------
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (595)
++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 007634 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (595)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (595)
...+..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888777
Q ss_pred H---cCCHHHHHHHHHHHHh-----c--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 128 ~---~g~~~~A~~~~~~~l~-----~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
. .|++++|+..|++++. . .|++.......+.++..+|.++...|++++|+..++++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+... +..+|.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~ 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP-------YIQLACLAY 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH-------HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997654 445566666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cC
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE------ACNNLGVIYKD---RD 348 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~---~~ 348 (595)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++. ++..+|.++.. .|
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 7889999999999999999999999999999999999999999999999999888755 99999999999 99
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
++++|+..+++++...|++..++..+|.++...|++++|...|+++++++|+++.++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=299.47 Aligned_cols=381 Identities=14% Similarity=0.050 Sum_probs=305.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD----- 112 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 112 (595)
.+..+-.+|.++...|++++|++.|+++++. +|.....+.++|.+|..+|++++|+..+++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556677999999999999999999999875 67778899999999999999999999999999863
Q ss_pred ---CCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 113 ---PQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 113 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++..+ ...++.++|++.++++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l----~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----HHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhcC
Confidence 35677888888777664 5799999999999999999998865555444333 35688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 007634 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
|+++.++..+|..+.. .|++++|+.++++++..+|..+.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999877665 467889999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHhhhh------------hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 007634 264 NMAIALTDLGTK------------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 264 ~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 331 (595)
.++.++...+.. ....+.+++|+..+++++..+|....++..+|.++...|++++|+.+|+++++..|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 888877654322 22334578899999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 332 HCAE---ACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 332 ~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
++.. ++..+|.+ +...|++++|+.+|++++++.|++..... ....+...+++++..+|+++.++..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7643 45666655 45789999999999999999998765332 2345567788999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+|.+|..+|++++|+++|++|+++.|.++.+...
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999999877543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=299.52 Aligned_cols=353 Identities=17% Similarity=0.163 Sum_probs=311.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH------
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (595)
+.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999995 77776654322
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q 007634 119 --------------------------------------------------------------HTHCG--------ILYKD 128 (595)
Q Consensus 119 --------------------------------------------------------------~~~la--------~~~~~ 128 (595)
...++ .....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11111 12223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 208 (595)
.|++++|+..|+++++..|++...+..++.++..+|.++...|++++|+..++++++.+|+ ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 007634 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (595)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (595)
+|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+..++ .++...|++++|+..
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA-------CLLYKQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH-------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876655554 445557899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc----------CCHHH
Q 007634 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDR----------DNLDK 352 (595)
Q Consensus 289 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~----------~~~~~ 352 (595)
++++++..|+++.++..+|.++...|++++|+..|+++++..|.+. ..+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9999999999999999999999999999999999999999876543 3466778999998 99999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+..+...
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=293.38 Aligned_cols=303 Identities=17% Similarity=0.114 Sum_probs=247.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 007634 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (595)
++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCCcHHHHHHHHHHHHHH-HhhccccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcc--
Q 007634 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (595)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~-- 512 (595)
...+..+. ..+........+.|..+. .....+ ..+.+..+++++||||++++|..|++++++..++++
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRP--LAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCC--CCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCC--CCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 77654321 334444444445555433 322222 122333457899999999999999999999999999
Q ss_pred cCCCceEEEEeeCCcc-CChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCC
Q 007634 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (595)
Q Consensus 513 ~d~~~fe~~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~AP 591 (595)
+++.+|||++|+.++. .+..+.+++... .|+++.+++..++++.|+++++||+++++|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQAS-----TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHHTS-----EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHhcC-----eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998654 456666665532 6888888889999999999999999999999999999999999999
Q ss_pred cccC
Q 007634 592 VQVC 595 (595)
Q Consensus 592 vq~~ 595 (595)
||++
T Consensus 308 ~~~~ 311 (568)
T 2vsy_A 308 VQVN 311 (568)
T ss_dssp EEEE
T ss_pred eeEe
Confidence 9874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=264.11 Aligned_cols=301 Identities=19% Similarity=0.189 Sum_probs=225.3
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+.+.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34566777788888888888888888888888888888788778888888888888888888888888888888888888
Q ss_pred HHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 125 LYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 125 ~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
++...| ++++|+..|++++..+|.+... +..+|.++...|++++|+..++++++..|+...++..+|.++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 888888 7888888888888877776655 66777777777888888888888877777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...+.....
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------- 229 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------------------- 229 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS----------------------
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc----------------------
Confidence 7777778777777777777777777777777777777777777777777655432100
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
...|....++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|++++++
T Consensus 230 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 230 ----------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ----------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0013445677777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHH-HhcCCH
Q 007634 364 KPNFSQSLNNLGVVY-TVQGKM 384 (595)
Q Consensus 364 ~~~~~~~~~~la~~~-~~~g~~ 384 (595)
+|++..++..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 777777777777766 444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=264.06 Aligned_cols=297 Identities=16% Similarity=0.145 Sum_probs=180.3
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
+...|+++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS-- 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--
Confidence 334444555555555555555555555555555555555555555555555555555555555555555555544433
Q ss_pred HHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007634 155 CLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (595)
Q Consensus 155 ~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (595)
+..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+...+..+|.
T Consensus 93 -----~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 93 -----WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp -----HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444444445555 45555555555555555444445555555555555555555555544444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 007634 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313 (595)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 313 (595)
++...|++++|+..+ +++++..|.++.++..+|.++...
T Consensus 168 ~~~~~~~~~~A~~~~-----------------------------------------~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 168 EYGLTNNSKLAERFF-----------------------------------------SQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHTTCHHHHHHHH-----------------------------------------HHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHH-----------------------------------------HHHHHhCCCChHHHHHHHHHHHHc
Confidence 444444444444444 444444444556666777777777
Q ss_pred CCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 314 LKFDMAIVFYELAFHFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 314 ~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
|++++|+..++++++.. |..+.++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 77777777777777764 556778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSIS 419 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 419 (595)
++|+.+++++++++|+++.++..++.++ ...|+.+
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888888888888888888888888877 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=271.20 Aligned_cols=302 Identities=17% Similarity=0.171 Sum_probs=227.3
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 126 YKDEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 126 ~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+...|++++|+. .|++++...|+++.. .+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 334456666666 666666655554311 0112455566666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---------HHHHHHhhhh
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTK 275 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---------~~~~~~l~~~ 275 (595)
|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+... ...+..++.+
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666655433211 1111233444
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 353 (595)
+ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4 578999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHcCCHHHHH
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~ 422 (595)
+.+|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.++..+|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999999999999999999999999999999999999999998887 899999999999999999999
Q ss_pred HHHHHHHhc
Q 007634 423 DAYEQCLKI 431 (595)
Q Consensus 423 ~~~~~al~~ 431 (595)
.+++++++.
T Consensus 351 ~~~~~~l~~ 359 (368)
T 1fch_A 351 AADARDLST 359 (368)
T ss_dssp HHHTTCHHH
T ss_pred HhHHHHHHH
Confidence 999877764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-29 Score=255.18 Aligned_cols=363 Identities=18% Similarity=0.157 Sum_probs=322.1
Q ss_pred CCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCcH
Q 007634 45 GFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 116 (595)
..+++..+.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578899999999999 99999999999999986 689999999999999 99999999999999875 588
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCC
Q 007634 117 CAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 117 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~ 188 (595)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.+ +..+|.++.. .+++++|+.+|+++++.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG-------QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 999999999999 89999999999999875 34454 7778888877 78999999999999986
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Q 007634 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~ 256 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSI 256 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence 579999999999999 89999999999999876 468999999999997 899999999999998763 344
Q ss_pred HHhhHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCC
Q 007634 261 AKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~~ 331 (595)
+.. .+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+.
T Consensus 257 a~~-------~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-- 325 (490)
T 2xm6_A 257 AQF-------RLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-- 325 (490)
T ss_dssp HHH-------HHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred HHH-------HHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence 444 44444444 78999999999999865 6789999999999998 9999999999999986
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 332 HCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
.++.+++.+|.++...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.+
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 46789999999999877 899999999999987 679999999999999 899999999999999864 6899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---Chhhhhh
Q 007634 405 YNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 441 (595)
Q Consensus 405 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 441 (595)
++++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999999999 89999999999999999965 5555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=265.22 Aligned_cols=361 Identities=13% Similarity=0.037 Sum_probs=290.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999999986 5667788999999999999999999999999886432110
Q ss_pred H-HHHHHHHHHHhHHHHHH--hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 007634 152 A-AECLAIVLTDLGTSLKL--AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 152 ~-~~~~a~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 225 (595)
. ....+.++..+|.++.. .+++++|+.+|+++++++|+++.++..++.++.. .++.++|++.++++++++|+++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 00113346666665554 4579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 007634 226 EAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (595)
Q Consensus 226 ~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 301 (595)
.++..+|..+... +++++|+.++++++...|.....+..++.+ +...|++++|+..++++++.+|+++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~-------~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF-------YRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH-------HHHcCchHHHHHHHHHHHHhCCChHH
Confidence 9999998776654 678899999999999999988766555554 45578999999999999999999999
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 302 AMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 302 ~~~~la~~~~~~-------------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
++..+|.+|... +.+++|+..+++++..+|....++..+|.++...|++++|+.+|+++++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988653 3467899999999999999999999999999999999999999999999
Q ss_pred cCCCCHH---HHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 363 IKPNFSQ---SLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 363 ~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
+.|++.. ++..+|.+ +...|++++|+..|+++++++|++...... ...+...++++++.+|+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHH
Confidence 9887643 45667754 457899999999999999999997654332 245667888999999999988
Q ss_pred hhhHHHHhhhccCCCcHHHHHH
Q 007634 439 GQNRLLAMNYINEGHDDKLFEA 460 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~ 460 (595)
+.++ +..|...|+.+++.+.
T Consensus 433 ~~~L--G~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 433 LHVL--AFLQELNEKMQQADED 452 (472)
T ss_dssp HHHH--HHHHHHHHHCC-----
T ss_pred HHHH--HHHHHHcCCHHHHHHH
Confidence 8775 5555555555554433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=265.24 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=227.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A 135 (595)
.+.|..+...++.+....|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444444332 3445577777777 7777777776653 4577777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (595)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (595)
+..|+++++.+|.+... +..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++
T Consensus 84 ~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 84 VLLFEAAVQQDPKHMEA-------WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHSCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777776654 56667777777777777777777777777777777777777777788888888888
Q ss_pred HHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhh
Q 007634 216 KAALERPMYAEAYC----------------NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 216 ~al~~~~~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~ 277 (595)
++++..|.+...+. .++.++ ..|++++|+..++++++..|. ....+ ..+|.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~-------~~l~~~~~ 228 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ-------CGLGVLFN 228 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH-------HHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH-------HHHHHHHH
Confidence 77777777655543 456665 888888888888888888888 44444 44455555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56788999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 358 QMALSIKPNF-----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 358 ~~al~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
++++++.|++ ..++..+|.++..+|++++|...++++++.
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999998887 889999999999999999999988877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=261.15 Aligned_cols=291 Identities=20% Similarity=0.162 Sum_probs=249.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
..+.+.+...+.++.. -+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555544321 1123778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---HHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+++.+|++..++..+|.++...|++++|+..++++++..|++...+..+ +.++..+|.++...|++++|+..+++++
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876555444 5566677888888999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 294 YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 294 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
...|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|+++++.+|++..++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
..+|.++...|++++|+.+|++++++.|+ +..++..++.++..+|+.+.+.....+.+.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999999876 357899999999999999998887766443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=242.74 Aligned_cols=375 Identities=16% Similarity=0.092 Sum_probs=318.5
Q ss_pred CchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCcHH
Q 007634 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
.++..++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+..|+++.+. +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 467889999999999 99999999999999875 588999999999999 89999999999999875 5799
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++.+|.+|.. .+++++|+.+|+++++. .+..+ +..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS-------CNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 89999999999999986 34444 7778888887 89999999999999875 4
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 190 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999876 568899999999999 99999999999999876 44545
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
...++.++.... ....+++++|+..|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++
T Consensus 294 ~~~Lg~~y~~~~--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGA--EGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCB--TTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHcCC--CCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 444444443310 00128999999999999986 56789999999999877 899999999999987 6799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 007634 339 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPT---YAEAYNN 407 (595)
Q Consensus 339 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 407 (595)
.+|.+|.. .+++++|+.+|+++.+. .++.++.++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 99999999 89999999999999986 468999999999998 89999999999999999954 8889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
++.++.. +.+.|.+..++.++..|+...+....+.+...+
T Consensus 446 l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 485 (490)
T 2xm6_A 446 EKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQKLKAQSAV 485 (490)
T ss_dssp HTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCC
T ss_pred HHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 456666667777776777666655444433333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-28 Score=247.36 Aligned_cols=415 Identities=10% Similarity=-0.009 Sum_probs=312.2
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+.+.++.++.. ...|++++|...|+++++.+|.+...|..++..+...|++++|...|++++...| +...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 4578889999984 7899999999999999999999999999999999999999999999999999999 6778888875
Q ss_pred -HHHHcCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHH---------hCChHHHHHHHHHHHhhC
Q 007634 125 -LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALKID 187 (595)
Q Consensus 125 -~~~~~g~~~~A~~----~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~---------~~~~~~A~~~~~~~l~~~ 187 (595)
+....|++++|.+ .|++++.. +|.+... |...+..... .|++++|..+|+++++ .
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 4456788877765 78888764 3444444 3344443333 6889999999999999 5
Q ss_pred CCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHHHH
Q 007634 188 PHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMGVI 234 (595)
Q Consensus 188 ~~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~~~~-------~~~~~~la~~ 234 (595)
|... ..|....... ...+++..|...+.. .++. .|.. ...|......
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6543 3333322221 124567777776665 3322 2221 2344444333
Q ss_pred HHHc----CCH----HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-------hhhhhhhcCCHHHHHHHHHHHHh-hCCC
Q 007634 235 YKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTD-------LGTKVKLEGDINQGVAYYKKALY-YNWH 298 (595)
Q Consensus 235 ~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 298 (595)
.... ++. ..++..|++++...|.++..|..++..+.. .|.......-.++|+..|+++++ ..|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2221 232 478889999999999999999999888775 45332111125789999999997 7899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 299 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+..+|..+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 999999999999999999999999999999999885 6899999999999999999999999999988877777766665
Q ss_pred -HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH--HhhhccCCCc
Q 007634 378 -YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL--AMNYINEGHD 454 (595)
Q Consensus 378 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--~~~~~~~~~~ 454 (595)
+...|++++|...|+++++.+|+++.+|..++.++...|+.++|...|++++...|.++......+. .......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3468999999999999999999999999999999999999999999999999988776652222211 1112345776
Q ss_pred HHHHHHHHHHHHHHH
Q 007634 455 DKLFEAHRDWGKRFM 469 (595)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (595)
+.......+....++
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 666555444444333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=243.32 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=253.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHH------HHHHHh-hh-hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
++++|+..+++++...|.+...+..+. .....+ +. ++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999998765444331 111112 33 4677889999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..|++++|+..++++++.+|+++.++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 392 EKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 392 ~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+++++..|+ +..++..+|.++..+|++++|...++++++..|++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999999 899999999999999999999999999988776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=248.26 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=232.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVV 200 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~---a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~ 200 (595)
+...|++++|+..|+++++..|++...+..+ +.++..+|.++...|++++|+..|+++++.+|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998876665443 455667799999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..++.++ ...|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-------~~~g 295 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC-------INLG 295 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-------HHCC
Confidence 999999999999999999999999999999999999999999999999999999999876655555544 4567
Q ss_pred CHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
++++|+..|+++++..|+. ..++..++.++...|+.+.+.....+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999999988773 345666666666666666655555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=242.63 Aligned_cols=373 Identities=12% Similarity=-0.013 Sum_probs=274.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 71 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 45
Q ss_pred HHHHHHHHHHHHhHH-HHHHhCChHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHH
Q 007634 151 PAAECLAIVLTDLGT-SLKLAGNTQDGIQ----KYYEALKI---DPHYAPAYYNLGVVYSE---------LMQYDTALGC 213 (595)
Q Consensus 151 ~~~~~~a~~~~~l~~-~~~~~~~~~~A~~----~~~~~l~~---~~~~~~~~~~la~~~~~---------~g~~~~A~~~ 213 (595)
+.+ ..++. .....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+
T Consensus 80 ~lw-------~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 80 DLW-------KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 553 33332 2234577776665 77777764 56778899888887765 7899999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHhc-----CCCc-------HH
Q 007634 214 YEKAALERPMYA--EAYCNMGVIY-------------KNRGDLESAIACYER------CLAV-----SPNF-------EI 260 (595)
Q Consensus 214 ~~~al~~~~~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------al~~-----~~~~-------~~ 260 (595)
|+++++ .|... ..|....... ...+++..|...+.. .++. .|.. ..
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 999999 56542 3333322221 134567778776665 4432 3321 12
Q ss_pred HHhhHHHHHHHhhhh----------hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH-------HHHHHH
Q 007634 261 AKNNMAIALTDLGTK----------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD-------MAIVFY 323 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~ 323 (595)
.+.... ....+.. ......+++|+...-......-.....+..........|+++ +|+..|
T Consensus 232 ~w~~~~--~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 232 MWKKYI--QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHH--HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 232222 1111100 011124566655432111100001111111112223578876 999999
Q ss_pred HHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 324 ELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 324 ~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 99997 8999999999999999999999999999999999999985 699999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 402 AEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 402 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
...+...+.+ +...|++++|..+|+++++.+|+++.++.++.. .....|+.+.+
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~--~~~~~g~~~~A 444 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID--YLSHLNEDNNT 444 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH--HHHhCCCHhhH
Confidence 7777776665 446999999999999999999999988866533 33445554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=242.94 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=191.5
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSADPSYKPAA 153 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~ 153 (595)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|++++.++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a- 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV- 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-
Confidence 455677778888888888888888888888888888888888888888888888886 888888888888888887766
Q ss_pred HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007634 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (595)
Q Consensus 154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (595)
|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|.+..+|+++|.
T Consensus 169 ------~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 169 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66677777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 007634 234 IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (595)
Q Consensus 234 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 312 (595)
++.. .|..++|+ .+.++..|++++.++|++..+|..++.++..
T Consensus 243 ~l~~l~~~~~eA~------------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 243 VISNTTGYNDRAV------------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTTCSCSHHH------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHhcCcchHHH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 8887 44435553 1223445555555555556666666666666
Q ss_pred cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHh
Q 007634 313 ML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---------NLDKAVECYQMA-LSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 313 ~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~a-l~~~~~~~~~~~~la~~~~~ 380 (595)
.| ++++|+..++++ +.+|++..++..+|.++..+| .+++|+++|+++ ++++|.....|..++..+..
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 55 466666666665 666666666666666666653 246666666666 66666666666666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=243.47 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=197.5
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHh
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
..+|++..++..+|.++...|++++|+..++++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..++.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34555566666666666666666667766666666666666666666666666665 67777777777766666666555
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (595)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 343 (595)
.++.++.. .|++++|+..|+++++++|++..+|..+|.++...|++++|+.+|+++++++|++..+|+++|.+
T Consensus 171 ~~g~~~~~-------~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 171 HRRVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-------ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55544444 34667777777777777777888888888888888999999999999999999999999999999
Q ss_pred HHH-cCCHHHH-----HHHHHHHHccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 344 YKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 344 ~~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+.. .|..++| +.+|++++.++|++..+|.++|.++...| ++++|++.++++ +.+|+++.++..+|.+|..+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 988 5554777 58899999999999999999999999988 689999999888 88999999999999999987
Q ss_pred C--------C-HHHHHHHHHHH-HhcCCCChhhhhhHHH
Q 007634 416 G--------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLL 444 (595)
Q Consensus 416 g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~ 444 (595)
| + +++|+++|+++ ++++|.....|..+..
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5 2 58999999999 9999998887776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=236.71 Aligned_cols=277 Identities=18% Similarity=0.193 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
..+.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH------HHHHHh-HH-HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA------IVLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a------~~~~~l-~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...|++++|+..+++++...|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999998876643320 001112 33 467789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++..|.+...+..++ .++..
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~-------~~~~~ 252 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA-------VSYSN 252 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-------HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877655544 44555
Q ss_pred cCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 279 EGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
.|++++|+..+++++...|. ...++..+|.++...|++++|...++++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 67999999999999999888 67888888888888888888888887776553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=235.76 Aligned_cols=382 Identities=15% Similarity=0.075 Sum_probs=279.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..+|..+++.|++++|+.+|+++.+. .++.+++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5788999999999999999 9999999999976 77899999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 129 ~g-----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
.+ ++++|+.+|+++++..+. .+ ++.+|.++...+... ++.+.+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--NT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--SC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--HH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 889999999999985443 45 556666666655544 34555555443 3457899999999
Q ss_pred HHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhh
Q 007634 201 YSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (595)
Q Consensus 201 ~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (595)
|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+.+|+++.+..+.....+..++.++...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g- 226 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA- 226 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9999966555554 44444434 449999999999999 999999999999999998876656666555321
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 007634 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 348 (595)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-- 348 (595)
....+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 227 --~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 --TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp --GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred --CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 122379999999999998 8999999999998 5 5789999999999999865 48999999999998 55
Q ss_pred ---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 007634 349 ---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS 417 (595)
Q Consensus 349 ---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 417 (595)
++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+.++||.+|.. ..+
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCC
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999998 8999999999999987 44999999999999874 567899999999985 569
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHHHHHHH
Q 007634 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (595)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (595)
+.+|..+|+++.+..+. .+...+......+...+..+.....++|...-
T Consensus 374 ~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999997654 34333322333333333334444455555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=221.78 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++. .|.++. ..+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~---~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK---AKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT---CCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh---HHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888888 443322 1244566
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 67777777889999999999999999999999999999999999999999999999999999999999999555556699
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CC-----cHHHHHHHHHHHHHcCCHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~ 419 (595)
++|+.+|+++++.+|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999885 44 2378999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhH
Q 007634 420 LAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|+.+|+++++++|+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=219.37 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=205.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 122 (595)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 44443 458999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
|.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999998776 7888888899999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHH-HhhHHHHHHHhhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKL 278 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~~~~ 278 (595)
..+++++|+..++++++..|++..++..+|.++...|+ +++|+..++++++.....+.. ...+..++..+|.++..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999 999999999999876332211 11223344444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLG 307 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la 307 (595)
.|++++|+.+++++++.+|+++.++-.++
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 44444444444444444444444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=214.67 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=139.5
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 229 (595)
+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4457777777777888888888888888777 777778888888888888888888888887776655 57777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 230 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
.+|.++...|++++|+.++++++...|.. .++.. .|++++|+..+++++...|....++..+|.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 77777777777777777777777776651 11222 2345555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555544455555555555555555555
Q ss_pred HHHHHHHhC
Q 007634 390 MIEKAIAAN 398 (595)
Q Consensus 390 ~~~~al~~~ 398 (595)
+++++++++
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 555554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=216.36 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 36788999999999999999999999999999 88999999999999999999999999999998876532333345677
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888899999999999999999987 5677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|..+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC------CCChhhhhh
Q 007634 430 KID------PDSRNAGQN 441 (595)
Q Consensus 430 ~~~------p~~~~~~~~ 441 (595)
+++ |++..+...
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=213.35 Aligned_cols=260 Identities=8% Similarity=-0.037 Sum_probs=174.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (595)
..+..|+|++|+..++++...+|++ .+....++.+|...|++++|+..++.. +|.. ..++..++..+..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------~~a~~~la~~~~~ 77 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------LQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------HHHHHHHHHHHcC
Confidence 4556777777777777766666665 346666777777777777777655441 2211 2235566677777
Q ss_pred hCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
.++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|+..
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888888887765 588888888889999999999999988887 78888999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++++.+|++.... ++..+..+ +...|++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++
T Consensus 153 l~~~~~~~p~~~~~~--l~~a~~~l---~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQ--LATAWVSL---AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHCTTCHHHH--HHHHHHHH---HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhCcCcHHHH--HHHHHHHH---HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988888764222 22222111 1123556666666666666666666666666666666666666666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQS 370 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~ 370 (595)
+.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 6666666666666666666665544 345555666666665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=207.79 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=178.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 126 YKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 126 ~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
+... |++++|+..|+++++.+|++..+ +..+|.++...|++++|+..|+++++++ +++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-------HLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 9999 99999999999999999999876 7788888899999999999999999999 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=207.06 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56667777778778788888888888888877777777777777877777777777777777777777776666555555
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++...+.. .+. .....|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 54443100 000 112237888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888888888888 88888888888888888888888888888888888888888888888888888888888877
Q ss_pred HH
Q 007634 428 CL 429 (595)
Q Consensus 428 al 429 (595)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=212.26 Aligned_cols=259 Identities=12% Similarity=0.018 Sum_probs=227.6
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
..+..|++.+|+..+++....+|++ ......++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456799999999999888777776 46778899999999999999998866 2555678889999999999999999
Q ss_pred HHHHHHHHhc--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 245 ~~~~~~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
++.+++++.. +|+++..+..++ .++...|++++|+..+++ |.+..++..+|.++..+|++++|+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la-------~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAA-------SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHH-------HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHH-------HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 588876655544 445557899999999998 88999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 323 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
++++++.+|++.......+ .++...|++++|+.+|+++++..|+++.+++++|.++...|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999865544433 34445689999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~ 439 (595)
+++++.++|.++...|+..+ +..+++++++++|+++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999976 5789999999999998664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=233.49 Aligned_cols=299 Identities=22% Similarity=0.279 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCH
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~ 191 (595)
.+..+|.++...|++++|+..|++++...|.+... .+.++..+|.++...|++++|+..+++++.. .|...
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444444444444444444444444444443221 2223444444444444444444444444433 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAI 245 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~ 245 (595)
.++..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 556666777777777777777777766654432 4477778888888888 88888
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 007634 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A 319 (595)
.++++++.+.+... .....+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88888776532221 1123456777788888888899999999999987755433 3788899999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHH
Q 007634 320 IVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 320 ~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 387 (595)
+.++++++...+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998876554 6788888999999999999999999988875433 56788889999999999999
Q ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHH
Q 007634 388 AEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 388 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 420 (595)
+.++++++++.+ ....++..+|.++...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999888732 335678888888888887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=233.88 Aligned_cols=304 Identities=20% Similarity=0.209 Sum_probs=225.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCc
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (595)
.....++..|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4677889999999999999999999999999999984 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHH
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~ 175 (595)
..++..+|.++...|++++|+..+++++...+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 778999999999999999999999999988664322 23346678888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 007634 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLES 243 (595)
Q Consensus 176 A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~ 243 (595)
|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888888776 23335567778888888888888888888877764432 2367777777777777777
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
|+.++++++...+.... .... ..++..+|.++...|++++|+.++
T Consensus 246 A~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-chHH----------------------------------HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 77777777765443211 0111 334555666666666666666666
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHH
Q 007634 324 ELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 324 ~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~ 385 (595)
+++++..+.. ..++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|+..
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6666553322 55666777777777777777777777776632 22556777777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=225.41 Aligned_cols=285 Identities=22% Similarity=0.231 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
...++.+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++........
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND------ 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC------
Confidence 34455556666666666666666666666555554 34555555555555555555555555443211100
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l 231 (595)
.+....++..+|.++...|++++|+.+++++++. .+....++..+
T Consensus 122 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 122 -----------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 2334556677777777777777777777777666 34456678888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 232 GVIYKNRGD-----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 232 a~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
|.++...|+ +++|+.++++++.+.+... +
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------------------~------------- 218 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---------------------D------------- 218 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---------------------C-------------
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---------------------C-------------
Confidence 888888888 6666666666654322110 0
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 007634 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF- 367 (595)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~- 367 (595)
.+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 219 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 219 -RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 01123456667777777777777777777777765432 2377888888888888888888888888876543
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 368 -----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 368 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..++..+|.++...|++++|+.++++++...+. ...++..+|.++..+|++++|..+|++++++.+...
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 668889999999999999999999999887443 256899999999999999999999999999988643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=222.61 Aligned_cols=279 Identities=23% Similarity=0.280 Sum_probs=223.1
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 226 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 226 (595)
+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45577899999999999999999999999999986 58999999999999999999999999987 466788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-----------------HHHHHHHH
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVAYY 289 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 289 (595)
++..+|.++...|++++|+.++++++...+.... ....+.++..+|.++...|+ +++|+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999987432111 12335566667777776777 55555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
+++++..+ .. ...+....++..+|.++...|++++|+.++++++++.+....
T Consensus 207 ~~al~~~~---------------------------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 207 QENLKLMR---------------------------DL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHH---------------------------HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH---------------------------Hc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 55443211 10 011223568899999999999999999999999998765433
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 370 ------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 370 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++++.++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999999999999999999986643 678999999999999999999999999998765432
Q ss_pred ----hhhhHHHHhhhccCCCcHHHHHHHHHH
Q 007634 438 ----AGQNRLLAMNYINEGHDDKLFEAHRDW 464 (595)
Q Consensus 438 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (595)
+.....++..+...|+.+++....++.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344677888889888776655433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=215.05 Aligned_cols=276 Identities=25% Similarity=0.298 Sum_probs=236.0
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~ 228 (595)
.+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 36778999999999999999999999999998 467889999999999999999999999876 34457789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHH
Q 007634 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAY 288 (595)
Q Consensus 229 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 288 (595)
..+|.++...|++++|+.+++++++..+..... ...+.++..+|.++...|+ +++|+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999886543221 2345667777788887888 9999999
Q ss_pred HHHHHhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 289 YKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 289 ~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
+++++... +....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988762 3335689999999999999999999999999875432 34899999999999999999999
Q ss_pred HHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 357 YQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 357 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
+++++...+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999886554 6788999999999999999999999999875432 56889999999999999999999
Q ss_pred HHHHHhcCCCC
Q 007634 425 YEQCLKIDPDS 435 (595)
Q Consensus 425 ~~~al~~~p~~ 435 (595)
+++++++.++.
T Consensus 326 ~~~a~~~~~~~ 336 (338)
T 3ro2_A 326 AEKHLEISREV 336 (338)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=200.55 Aligned_cols=217 Identities=18% Similarity=0.221 Sum_probs=185.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
....+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 77788888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
.|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|++...+..++.
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=215.96 Aligned_cols=354 Identities=18% Similarity=0.102 Sum_probs=261.8
Q ss_pred chHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCCCcHHH
Q 007634 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (595)
+++.++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+++++. +++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 345567788888888888 9999999999976 7789999999777766 889999999999984 45669
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH----HHHHHhhCCCCH
Q 007634 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK----YYEALKIDPHYA 191 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~----~~~~l~~~~~~~ 191 (595)
++.+|.+|...+...+ +...+.++... .++.+ .+.+|.++...+.++++... ++.+...+ +
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a-------~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~ 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEA-------GLAQVLLYRTQGTYDQHLDDVERICKAALNTT---D 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTH-------HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---T
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---H
Confidence 9999999998776544 44455554433 23333 67778888888855555444 44444444 4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 192 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+...
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999766 79999999999998 888888887
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KFDMAIVFYELAFHFNPHCAEACNN 339 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~ 339 (595)
++.++..- ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.++++
T Consensus 254 Lg~~~~~~----~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 254 LAQLLYDF----PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY 323 (452)
T ss_dssp HHHHHHHS----GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH
Confidence 77764421 2378999999999999865 48999999999998 55 9999999999999 899999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 340 la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
+|.+|.. ..++++|+.+|+++.+. .++.+.+++|.+|.. ..++.+|..+|+++.+..+ ..+...++.+
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l 399 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQL 399 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 9999987 45999999999999874 568899999999985 5699999999999988654 5566666666
Q ss_pred HHHc--CCHHHHHHHHHHHHhcCCC
Q 007634 412 YRDA--GSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 412 ~~~~--g~~~~A~~~~~~al~~~p~ 434 (595)
...+ ++..+|....++..+..+.
T Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5443 3566777777776665443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=210.32 Aligned_cols=284 Identities=20% Similarity=0.232 Sum_probs=209.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCcH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNA 116 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (595)
....++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 356788999999999999999999999999999984 68889999999999999999999999887 44557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHHH
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQDG 176 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~A 176 (595)
.++..+|.++...|++++|+..++++++..+..... ...+.++..+|.++...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999999876643321 2345668888888888888 8888
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 007634 177 IQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 177 ~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A 244 (595)
+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765 22234567777888888888888888887777654332 23667777777777777777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (595)
+.++++++...+.... .... ..++..+|.++...|++++|+.+++
T Consensus 243 ~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-hhHH----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777655433211 0111 3455566666666666666666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 325 LAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 325 ~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+++...+.. ..++..+|.++...|++++|..++++++++.+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666553321 446667777777777777777777777776554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=192.12 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
..|++++|+.++++++. ..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRV-------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 55654443 7788889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
++++|+..++++++..|.+...+..++.++...|++++|..+++++++..|+++...
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999987654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=194.61 Aligned_cols=213 Identities=22% Similarity=0.275 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
..++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--- 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV--- 100 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH---
Confidence 44445555555555555555555555555555555555555555555555555555555554444332222111111
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 351 (595)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+++
T Consensus 101 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 ----YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp ----HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred ----HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 1112233333333333333333333444444444444444555555554444444444444444444444444444
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
+|+..++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=185.28 Aligned_cols=172 Identities=24% Similarity=0.383 Sum_probs=166.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+.+.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
..++++.|...+.+++...|.+..++..+|.++..+|++++|+..|+++++.+|+++.++.++|.+|..+|++++|+.+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChh
Q 007634 426 EQCLKIDPDSRN 437 (595)
Q Consensus 426 ~~al~~~p~~~~ 437 (595)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=189.28 Aligned_cols=232 Identities=22% Similarity=0.324 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.. ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~-- 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN-- 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH--
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH--
Confidence 466788888888888888888888888888887 6778888888888888 888888888888888774 333
Q ss_pred hhHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCH
Q 007634 263 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 334 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~ 334 (595)
++..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+.+|+++++.. ++
T Consensus 76 -----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 76 -----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp -----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred -----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 34445555555 78888999999888877 378899999999999 999999999999999876 68
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 335 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 335 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..| +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 467899999999999 9999999999999999866 88999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChh
Q 007634 407 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 407 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
.+|.+|.. .+++++|+.+|++++++.|++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 99999999999999999987543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=209.98 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++.+|.++...|++++|+..++++++. .++ .+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 232 4688999999999999999999999999998776654344567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 334 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~-~~~~ 334 (595)
.++..+|.++...|++++|+..++++++..+.. ..++.++|.++...|++++|+.+++++++ .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 889999999999999999999999999875443 35899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHH
Q 007634 335 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999884 3334446789999999999 88888888776 33444567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
.+|.+|...|++++|..+|++++++...-
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=193.36 Aligned_cols=252 Identities=14% Similarity=0.073 Sum_probs=164.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
.....|++++|+..|+++++..+.+... .+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3445678888999999988876543322 3456888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++..|++.......... ...|++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~ 162 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------EQKLDEKQ 162 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HHHHCHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHhcCHHH
Confidence 9999999999999999999899999999999999999999999999998888876433222111 22345666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++...|++++|+.+|+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666555555433322 444444455555555555555444332 1344444444444444444444444444
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
++.+|++... .+.++...|++++|++.+
T Consensus 242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 4444433221 133344444444444433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=180.27 Aligned_cols=173 Identities=25% Similarity=0.361 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
+++.+|+.+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4566777777777777777777777777777777777777777777777777777777777777777776655
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
+..+|.++...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 55566666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCcH
Q 007634 240 DLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~ 259 (595)
++++|+..|+++++++|+++
T Consensus 156 ~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHhCCccCH
Confidence 88888888888887777643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-22 Score=185.32 Aligned_cols=181 Identities=23% Similarity=0.333 Sum_probs=97.3
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~ 241 (595)
.+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 444444444444444432 34455555555555 555555555555555442 45555555555555 5555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFD 317 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~ 317 (595)
++|+.+|+++++.. +..++..+|.++.. .++++
T Consensus 131 ~~A~~~~~~a~~~~-------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 131 KKAVEYFTKACDLN-------------------------------------------DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------------cHHHHHHHHHHHHcCCCCCCCHH
Confidence 55555555544432 23334444444444 55555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 007634 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 389 (595)
Q Consensus 318 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 389 (595)
+|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.
T Consensus 168 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 168 KALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 555555555544 234555666666666 6666666666666666543 5566666666666 666666666
Q ss_pred HHHHHHHhCCCc
Q 007634 390 MIEKAIAANPTY 401 (595)
Q Consensus 390 ~~~~al~~~p~~ 401 (595)
+|+++++..|++
T Consensus 244 ~~~~a~~~~~~~ 255 (273)
T 1ouv_A 244 NFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHTCHH
T ss_pred HHHHHHHcCCHH
Confidence 666666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=196.81 Aligned_cols=247 Identities=17% Similarity=0.151 Sum_probs=207.1
Q ss_pred HHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 167 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
....|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344588999999999999974 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+|+.+|+++++..|.+...+..++.+ +...|++++|+..++++++..|++......++.. ...|++++|+..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~-------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIA-------LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHH-------HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 99999999999999887655555444 4446799999999999999999988766666544 666999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
+++++...|.+...+. ++.++...++.++|+..+++++...|.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999998888766654 7777788888899999999998887643 6788999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 399 PTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
|++... .+.++..+|++++|++.+
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 876443 377888889999988877
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-23 Score=188.28 Aligned_cols=208 Identities=18% Similarity=0.116 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+.+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------
Confidence 555666666666666666666666666666666666666666666666666666666666555544
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~ 348 (595)
.+..++..+|.++...|++++|+.++++++. ..|.+..++..+|.++...|
T Consensus 103 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 103 ---------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 4455666667777777777777777777777 66667777777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777777778888888888888888888887777777777778888888888888888888888
Q ss_pred HhcCCCChhhh
Q 007634 429 LKIDPDSRNAG 439 (595)
Q Consensus 429 l~~~p~~~~~~ 439 (595)
++++|+++.+.
T Consensus 236 ~~~~p~~~~~~ 246 (252)
T 2ho1_A 236 KRLYPGSLEYQ 246 (252)
T ss_dssp HHHCTTSHHHH
T ss_pred HHHCCCCHHHH
Confidence 88887776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=181.73 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=153.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------- 69 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL-------------- 69 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--------------
Confidence 344455555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVI 343 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~ 343 (595)
...|.+..++..+|.++... |++++|+..++++++ ..|....++..+|.+
T Consensus 70 ---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 70 ---------------------------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 44555556666777777777 788888888888777 556667788888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
+...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHhcCCCChhhh
Q 007634 423 DAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 423 ~~~~~al~~~p~~~~~~ 439 (595)
.+++.+.+.+|+++.+.
T Consensus 203 ~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 88888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=192.50 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~ 204 (595)
++|+..|++++..+|.++..+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56777777777777777777665555554444334456775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+.... ...|+++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~------~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------YCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------HTSCCHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HHcCCHH
Confidence 9999999999999999999886 89999999999999999999999999998876544432221111 1246777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
+|...|+++++.+|+++.++..++.++...|++++|+..|++++.. .| ....+|..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777774 33 2566677777777777777777777777
Q ss_pred HHccCCCCH
Q 007634 360 ALSIKPNFS 368 (595)
Q Consensus 360 al~~~~~~~ 368 (595)
+++..|++.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 777777644
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=209.62 Aligned_cols=230 Identities=20% Similarity=0.228 Sum_probs=157.0
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
+.+++++..+.+.....|..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577888889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHh--hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++++|+ ...+..++.++..+ +......|++++|+..|+++++.+|++..++..+|.++...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------------- 226 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL-------------- 226 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------
Confidence 99999998 45555555544443 11111114555555555555555555555555555555444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
++..+. ..|++++|+.+|+++++++| +++.++.++|.++...|++++|+..|+++++++|++..+
T Consensus 227 ---------~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 227 ---------YFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp ---------HHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---------HHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 000000 00555555555555555555 555555556666656666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+..++.++..+|++++|+..+.+
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666666666666555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-22 Score=179.33 Aligned_cols=211 Identities=19% Similarity=0.125 Sum_probs=198.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 126 YKDE-GRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 126 ~~~~-g~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
+... |++++|+..++++++ ..|.... ++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYI-------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999 999999999999999 3444333 47888999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 007634 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
..|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+..|+++....
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=183.79 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=196.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
.+++.++..|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4568999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~ 202 (595)
++...|++++|+..|+++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
..| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++......++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 665 445667777766664443 344456677899999999999999999998877776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-21 Score=201.20 Aligned_cols=336 Identities=12% Similarity=0.065 Sum_probs=260.5
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
..+++..-..+..|...|.+.+|+++|++++- .|. +...-..++.+..+. +..+..++..+.-..+ .-
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 35666777778888899999999999999994 444 333333355444444 3344444444332111 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
.+|.++...|.+++|..+|+++- ....+ +...+...+++++|+++++++ +.+.+|+.+|.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~~~A----------~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VNTSA----------VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKA 1114 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CHHHH----------HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHH
Confidence 48999999999999999999973 11111 222233678999999999866 569999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++.. ... .+|..|.+.+
T Consensus 1115 ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt-------~LafaYAKl~ 1181 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VET-------ELIFALAKTN 1181 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccH-------HHHHHHHhhc
Confidence 99999999999999886 7899999999999999999999999999998875532 111 2445555566
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
++++ ++.|. ...+...+..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++
T Consensus 1182 rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1182 RLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 7775 43332 2334566778999999999999999999996 58999999999999999999999998
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+.
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 4568999999999999999999998774 4444 456668999999999999999999999999988877766
Q ss_pred hHH
Q 007634 441 NRL 443 (595)
Q Consensus 441 ~~~ 443 (595)
.+.
T Consensus 1319 ELa 1321 (1630)
T 1xi4_A 1319 ELA 1321 (1630)
T ss_pred HHH
Confidence 543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-23 Score=207.29 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p----------------------------- 134 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP----------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----------------------------
Confidence 45566666666666666666777777776666666 666666666665555
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVEC 356 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~ 356 (595)
++..++..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+.+
T Consensus 135 ------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 135 ------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp ------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 45566777788888888888888888888888888 68888888888888 999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
|+++++++|++..++..+|.++... |++++|+..|+++++++| +++.+++++|.+|..+|++++|+..|
T Consensus 202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhhHHHHhhhc
Q 007634 426 EQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
+++++++|++..++.++..++..+
T Consensus 282 ~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999998887765544443
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=213.05 Aligned_cols=147 Identities=9% Similarity=0.055 Sum_probs=111.7
Q ss_pred hhHHHHhhhccCCCcHHHHHHHHHHHHHHH-h--hccccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcccCCC
Q 007634 440 QNRLLAMNYINEGHDDKLFEAHRDWGKRFM-R--LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 516 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~ 516 (595)
.+.++-++|....+.-+.-+...++-++.. . .....+....++.++++++|||+|.+|++|||++++.+++.+ ||+
T Consensus 225 ~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~ 303 (631)
T 3q3e_A 225 HDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-ARE 303 (631)
T ss_dssp HHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTT
T ss_pred cceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhh
Confidence 344555667655554444444444444422 1 111111123334568899999999999999999999999987 999
Q ss_pred ceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCC----HHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCCc
Q 007634 517 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592 (595)
Q Consensus 517 ~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~APv 592 (595)
+|||+||+ ++..|+.| |+. +|+|+++.+++ ++++|++|++|+|||||||+|||.+.++.++++|||||
T Consensus 304 ~FEV~~Ys-~~~~D~~t---r~~----~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPV 375 (631)
T 3q3e_A 304 HFYLIGLG-SPSVDQAG---QEV----FDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPI 375 (631)
T ss_dssp TSEEEEEE-CTTSCHHH---HTT----SSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSE
T ss_pred cEEEEEEe-CCCCCHHH---Hhc----CcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchh
Confidence 99999999 77778887 333 48999999998 88999999999999999999999777777777999999
Q ss_pred ccC
Q 007634 593 QVC 595 (595)
Q Consensus 593 q~~ 595 (595)
|||
T Consensus 376 Qvs 378 (631)
T 3q3e_A 376 QAI 378 (631)
T ss_dssp EEE
T ss_pred eEe
Confidence 996
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=199.42 Aligned_cols=323 Identities=12% Similarity=0.056 Sum_probs=190.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCHHHHHHHH----HHHHHhCCHHHHH-----------HHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKG----ICLQMQNMGRLAF-----------DSFSE 107 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la----~~~~~~g~~~~A~-----------~~~~~ 107 (595)
..+...+.....+...+++++|..+++++.+.-+ .+...+.... ......++++.+. +.+++
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 3567778888888999999999999998866422 3444332221 2222233333333 44443
Q ss_pred HHHcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 108 AVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 108 al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+-. .|.... .++.+|.++...|++++|+..|++++.......+ ....+.++..+|.++...|++++|+.+++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 322 222222 2333666666666666666666666655222111 11123445555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 182 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
++++..+.... ..+....++..+|.++...|++++|+.++++++++.+....
T Consensus 168 ~al~~~~~~~~---------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~- 219 (383)
T 3ulq_A 168 QAYEIYKEHEA---------------------------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ- 219 (383)
T ss_dssp HHHHHHHTCST---------------------------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhCcc---------------------------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-
Confidence 55544222110 00111234455555555555555555555555544332211
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----- 330 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 330 (595)
....+.++..+|.++...|++++|+.+++++++ .+ |....++..+|.++...|++++|+.++++++++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 112344455555555555566666666666655 34 5567778888888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 331 PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
|.....+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..++++++++..
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3333445678888888888 78888888776 33445566888899999999999999999999987643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=184.64 Aligned_cols=224 Identities=8% Similarity=0.064 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHh-cCCCcHHHHhhHHHHHHHh
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYK-------NRGDL-------ESAIACYERCLA-VSPNFEIAKNNMAIALTDL 272 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~-------~~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~l 272 (595)
++|+..|++++..+|.++.+|+.+|.++. ..|++ ++|+..|++++. +.|++...+..++.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 67888888888888888888888888876 35876 899999999999 699887766665555544
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~ 350 (595)
.|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++
T Consensus 112 ------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 ------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp ------TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred ------cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 67999999999999999999887 999999999999999999999999999999998888877776544 7999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
++|+.+|+++++.+|+++.+|..+|.++...|++++|...|++++.. .| +...+|..++..+...|+.++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 55 368899999999999999999999999
Q ss_pred HHHhcCCCChhh
Q 007634 427 QCLKIDPDSRNA 438 (595)
Q Consensus 427 ~al~~~p~~~~~ 438 (595)
++++..|++...
T Consensus 266 ~a~~~~p~~~~~ 277 (308)
T 2ond_A 266 RRFTAFREEYEG 277 (308)
T ss_dssp HHHHHTTTTTSS
T ss_pred HHHHHccccccc
Confidence 999999987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=175.33 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=130.4
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
.+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 388899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 312 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~ 312 (595)
.|++++|+..++++++..|+++.....++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999998777666666666666665566666666666666655555 55555555555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-20 Score=197.55 Aligned_cols=320 Identities=16% Similarity=0.154 Sum_probs=258.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (595)
.|..+...|.|++|..+|+++- .+.. .+...+...+++++|.++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4899999999999999999972 1111 1233344888999999998865 66889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 213 (595)
+|+..|.++ ++... +...|.++...|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 45554 777888889999999999999999988744 3334458999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 214 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
|. ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++...|++++|++.++++
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 42 233 4466778999999999999999999985 13555666666678999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (595)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.+++.+...+..
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4678999999999999999999998774 3333 5566688999999999999999999999999999999988
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 374 LGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 374 la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+|.+|.+ -++..++++.|...+.+.| +....|..+..+|.+-|+++.|...+-..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 8888765 4577888888988888777 67889999999999999999999554444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=192.58 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++.+|..+...|++++|+..|+++++..+ ..+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577889999999999999999999987632 24678999999999999999999999999998776543233567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 335 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~~~~~~ 335 (595)
.++..+|.++...|++++|+..++++++..+. ...++.++|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999986432 245889999999999999999999999999 6787899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 335567788889999998 88888888772 233444678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=207.53 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=150.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..|++++++.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4678888888888888888888888888888888888888888888888888888888888888888888888766
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (595)
+.++|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77778888888888888888888888888888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 007634 237 NRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~ 257 (595)
..|++++|.+.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 999999999988888877554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=183.42 Aligned_cols=314 Identities=11% Similarity=0.005 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...+..... ...+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 3445556666666666666666666666555332 245666777777777777777777777665543222 2234
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----Y 224 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~ 224 (595)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 556778888888888888888888888763 334567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 304 (595)
..++..+|.++...|++++|..++++++.+.+................+.++...|++++|...+++++...+....
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--- 250 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--- 250 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch---
Confidence 56788999999999999999999999987643311000001111111222233344555555555554443332100
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHHHHHHH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVY 378 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~ 378 (595)
.....+..+|.++...|++++|...+++++...+. ...++..+|.++
T Consensus 251 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 251 ---------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp ---------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 00123344555555555555555555555544221 123455556666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
...|++++|...+++++...+. ......+...| +.....+++.+...|-
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 6666666666666666554321 01111222222 4455555555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=191.92 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=193.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 255 (595)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999999884 56667889999999999999999999999998874
Q ss_pred --CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 256 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (595)
Q Consensus 256 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 325 (595)
++.+ ..+.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235567778888888999999999999999874 45567899999999999999999999999
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CC------HHHHHHHHHHHHhcC
Q 007634 326 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------NF------SQSLNNLGVVYTVQG 382 (595)
Q Consensus 326 ~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------~~------~~~~~~la~~~~~~g 382 (595)
+++. .|....++..+|.++...|++++|+.+++++++..+ .. ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 666688999999999999999999999999997532 22 233444555566667
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+.+|...++++....|....++..+|.+|...|++++|..+|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7888888999999999999999999999999999999999999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-20 Score=181.03 Aligned_cols=280 Identities=14% Similarity=0.015 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..+++++...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46677888999999999999999999988775432 2345567888889999999999999999998875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|..++++++...+......
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2346788999999999999999999988764 33456777888899999999999999999888776532111
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC-HHHH--
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC-AEAC-- 337 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~-~~~~-- 337 (595)
...++..+|.++...|++++|...+++++...+ .. ....
T Consensus 173 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 173 ------------------------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp ------------------------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 123455566666667777777777777665522 11 1111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 007634 338 --NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (595)
Q Consensus 338 --~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (595)
..++.++...|++++|..++++++...|.. ...+..+|.++...|++++|...+++++...+. ...++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 134556788999999999999998876643 235688999999999999999999999887432 23588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..+|.++...|++++|...+++++.+.+.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=186.33 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=138.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC-
Q 007634 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID- 187 (595)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~- 187 (595)
....++..+|.++...|++++|+.++++++... ++.+. .+.++..+|.++...|++++|+..++++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555542 22222 34568889999999999999999999999874
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 188 -------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 188 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556788999999999999999999999999998 66678899999999999999999999999999
Q ss_pred hcCCCcHHHHh--hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 253 AVSPNFEIAKN--NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 253 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
+..+....... .....+. ....+...+..+...+.+.+|...+.++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWM----------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHC------CCHHH----------------------------HHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHhcCCCCCcchHHHHH----------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 76443110000 0000000 01122233333444455555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
|....++..+|.++...|++++|+.+|++++++.|
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55566666666666666666666666666665544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-20 Score=170.11 Aligned_cols=236 Identities=11% Similarity=-0.007 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
.++|+..+.+++.++|++..+|+..+.++...+ ++++++..+..++..+|++..+|.....++..+.......+++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 357888888888888888888888888888877 888888888888888888888888777777333222111368899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVEC 356 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~------~~~A~~~ 356 (595)
++..+.++++.+|.+..+|...+.+....|.++ +++++++++++.+|.+..+|...+.++...++ +++++++
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 999999999999999999999999999999998 99999999999999999999999999999987 9999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-I 431 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~ 431 (595)
+.+++..+|.+..+|+.++.++...|+..+ ...+++++++++ |.++.++..++.++.+.|+.++|+++|+.+.+ +
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998555 556777777766 88899999999999999999999999999997 8
Q ss_pred CCCChhhhhhH
Q 007634 432 DPDSRNAGQNR 442 (595)
Q Consensus 432 ~p~~~~~~~~~ 442 (595)
+|-....+..+
T Consensus 289 Dpir~~yW~~~ 299 (306)
T 3dra_A 289 NPIRSNFWDYQ 299 (306)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 99887776544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=185.64 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=203.9
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------Y 224 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~ 224 (595)
..++..|..+...|++++|+..|+++++..+ ..+.++..+|.++...|++++|+.+++++++..+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3477789999999999999999999998732 24678999999999999999999999999987442 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh-----hCCCC
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHY 299 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~ 299 (595)
..++..+|.++...|++++|+.++++++++.+..... ...+.++..+|.++...|++++|+.++++++. .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 5678899999999999999999999999875432211 24577888999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-----HCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 371 (595)
..++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|....++
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 89999999999999999999999999999843 345567788888888888 88898888873 3344556788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
..+|.+|...|++++|..+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=173.07 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=139.0
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (595)
.+.+++.++.+|..++..|+|++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44678999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++.+|.++.. .|++++|+..|+++++..|++......+..+... .+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~~ 146 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RAK 146 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HHH
Confidence 89999999999 9999999999999999999986653322111100 000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVSP 256 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~ 256 (595)
....++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 0122445555555555555555555555555554 334555555555544 455555555555555555
Q ss_pred Cc
Q 007634 257 NF 258 (595)
Q Consensus 257 ~~ 258 (595)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-19 Score=165.52 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=216.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---~~~ 241 (595)
...++|+..+.+++.++|++..+|+..+.++..+| ++++++..+.+++..+|.+..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44579999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEMLK---- 315 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---- 315 (595)
++++.++.++++.+|++..+|.....++..++ .++ ++++.++++++.+|.+..+|...+.++...++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999888888765 555 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 316 --FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 316 --~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
++++++++.+++..+|.+..+|+.++.++...|+..+ ...++++++.++ |.++.++..++.++.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999999999998555 556788888776 8889999999999999999999999
Q ss_pred HHHHHHH-hCCCcHHHHHHHHHH
Q 007634 390 MIEKAIA-ANPTYAEAYNNLGVL 411 (595)
Q Consensus 390 ~~~~al~-~~p~~~~~~~~la~~ 411 (595)
+|+.+.+ .+|-....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 799999988877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=170.49 Aligned_cols=177 Identities=12% Similarity=0.050 Sum_probs=150.2
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+.+|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999998 899999999999999999999999999999997654
Q ss_pred HHHHHHHHHHHhHHHHHH--------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 152 AAECLAIVLTDLGTSLKL--------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+ .
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~ 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------K 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------H
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------H
Confidence 3 3458888999998 899999999999999999988765544433322211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHhhHHHHHHHh
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDL 272 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~l 272 (595)
....++.+|.++...|++++|+..|+++++..|+ ...++..++.++..+
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 2344789999999999999999999999999998 566888999999877
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=176.21 Aligned_cols=213 Identities=16% Similarity=0.118 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
+|.++++++-+.-+.....+ .++.. +++++|+..|+++ |.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666555432211 11222 2478888888776 55677888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHH
Q 007634 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYE 215 (595)
Q Consensus 143 l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~ 215 (595)
+.+.+.... ....+.++.++|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 877543211 12235668888888888889999999988888876543 46788999999996 99999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 216 KAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 216 ~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
+++++.|.. ..++..+|.++..+|++++|+.+|++++...|++.........++..+|.++...|++++|+..|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987753 56789999999999999999999999999998865433333334444444444444555555555
Q ss_pred HHHHhhCCC
Q 007634 290 KKALYYNWH 298 (595)
Q Consensus 290 ~~~~~~~~~ 298 (595)
+++++++|.
T Consensus 223 ~~al~l~p~ 231 (292)
T 1qqe_A 223 QEGQSEDPN 231 (292)
T ss_dssp HGGGCC---
T ss_pred HHHHhhCCC
Confidence 444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=186.28 Aligned_cols=320 Identities=14% Similarity=0.115 Sum_probs=116.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 139 (595)
..|++++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 455666666666665 22346667777777777777777666543 34456666666666667777777666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 140 ~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
+.+.+..++ +. +...++.+|.+.|++.++.+.++ .|+ ..+|..+|..+...|+|++|..+|.++
T Consensus 85 ~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 85 QMARKKARE-SY-------VETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--
T ss_pred HHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 666653222 22 24445556666666666665553 132 346666666666666666666666654
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC
Q 007634 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (595)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 299 (595)
..+..+|.++.++|++++|++.++++ .++..|.....++.. .|+++.|..+... +.. +
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~~---~ 206 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-------GKEFRLAQMCGLH-IVV---H 206 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-------TTCHHHHHHTTTT-TTT---C
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-------cCcHHHHHHHHHH-HHh---C
Confidence 35666666666666666666666666 233344333333333 4566666554443 112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCC-----CCHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKAVECYQMALSIKP-----NFSQSLN 372 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~-----~~~~~~~ 372 (595)
++-...+...|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.++.|...+.+.| .+...|.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333445666666666666666666666666666666666666666543 355555555555555555 5556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAA------------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
.+..+|...++++.|....-+.... .+.+.+.++.....|. +....++..+..++
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 6666666666666665543333221 3344555555555444 23333444444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=174.87 Aligned_cols=225 Identities=16% Similarity=0.089 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------NACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (595)
++++|+..|+++ |.++...|++++|+..|.+++++.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56788999999999999999998532 2578999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDT 209 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~ 209 (595)
.+|++++++.+.... ....+.++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999998765432 223456789999999996 99999999999999997754 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh--hcC
Q 007634 210 ALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--LEG 280 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 280 (595)
|+.+|+++++..|.+.. ++..+|.++..+|++++|+.+|+++++++|+...... ...+..++..+. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~--~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE--SNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH--HHHHHHHHHHHHcCCHH
Confidence 99999999999887543 6789999999999999999999999999998664322 122222332222 234
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMY 304 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~ 304 (595)
++++|+..|++++.++|....++.
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHH
Confidence 566666666655555554443333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-17 Score=172.01 Aligned_cols=387 Identities=7% Similarity=-0.032 Sum_probs=295.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC--CcHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNACA 118 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~ 118 (595)
.+.+.+.|+.++......++++.+...|++++...|.....|...+......|+ ++.+..+|++++...| .++..
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457889999999999999999999999999999999999999999999999999 9999999999999984 57778
Q ss_pred HHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCCCHHHHHHHHHHHHHhH--HHHHHhCChHHHHHHHHHHH
Q 007634 119 HTHCGILYKDEGRL----VE----AAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 119 ~~~la~~~~~~g~~----~~----A~~~~~~~l~~----~~~~~~~~~~~a~~~~~l~--~~~~~~~~~~~A~~~~~~~l 184 (595)
|..........++. ++ ....|++++.. ++.....|........... .-+..+++.+.+..+|.+++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777666555543 33 44788888764 4555555443332211000 00011223444445555554
Q ss_pred hhCCCC--------------------------------------------------------------------------
Q 007634 185 KIDPHY-------------------------------------------------------------------------- 190 (595)
Q Consensus 185 ~~~~~~-------------------------------------------------------------------------- 190 (595)
......
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 321111
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHH
Q 007634 191 APAYYNLGVVYSELM-------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAK 262 (595)
Q Consensus 191 ~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~ 262 (595)
...|......-...+ ..+.....|++++...|..++.|+..+..+...|+.++|. ..|++++...|.+...+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 011111111111111 1234567899999999999999999999999999999997 99999999999887555
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-----------WH-----------YADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~-----------~~~~~~~la~~~~~~~~~~~A~ 320 (595)
...+.. ....|++++|..+|++++... |. ...+|...+.+....|+.+.|.
T Consensus 382 l~~a~~-------ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 382 FSLSEQ-------YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp HHHHHH-------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 544444 444678999999999998752 43 3457889999999999999999
Q ss_pred HHHHHHHhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 321 VFYELAFHF-NPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 321 ~~~~~~l~~-~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
..|.++++. .+....+|...|.+....++ ++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999988 55557788888888777654 9999999999999999999999999999999999999999999999998
Q ss_pred C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 399 P---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 399 p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
| ....+|......-...|+.+.+...++++.+..|+++.
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8 35678888899999999999999999999999999764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=189.97 Aligned_cols=174 Identities=14% Similarity=0.012 Sum_probs=158.3
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 59 RSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 78899999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 210 (595)
++++|+..|+++++++|++..+ +..+|.++...|++++ +..|+++++.+|++..+++++|.++...|++++|
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998776 6778888888899999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
+..|+++++.+|++..++.++|.++...++
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999877665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=157.11 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=166.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+..+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhh
Q 007634 426 EQCLKIDPDSRNA 438 (595)
Q Consensus 426 ~~al~~~p~~~~~ 438 (595)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-21 Score=158.55 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=116.1
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 351 (595)
+|.++...|++++|+..+++++...|+.+..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666777788888888888888878777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
+|+.+|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888888888888888888887766554 578888888888888888888877775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.6e-20 Score=191.78 Aligned_cols=188 Identities=14% Similarity=-0.014 Sum_probs=162.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34777887777766 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (595)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 336 (595)
++..++..++.++.. .|++++|+..|+++++.+|++..++.++|.++...|++++ +..|+++++.+|++..+
T Consensus 465 ~~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence 987766665555554 5799999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 383 (595)
++++|.++...|++++|+..|+++++++|++..++.++|.++...++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999877665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=162.44 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=116.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (595)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999888888 77777777777777777777777
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC--ChHHHHHHHHHHHhhCC
Q 007634 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDP 188 (595)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~--~~~~A~~~~~~~l~~~~ 188 (595)
.+|+++.++..+|.++...|++++|+..|+++++++|++..++ ..+|.++...| ....+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-------~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN-------IFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 7777777777777777777777777777777777777776663 33333333322 23444555555543222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
...+++.+|.++...|++++|+..|+++++++|+
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1234556666666666677777777777666665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-21 Score=181.25 Aligned_cols=356 Identities=13% Similarity=0.070 Sum_probs=203.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.|..+|..+.+.|++++|++.|.++ +++..+...+.++...|++++|+.+++.+.+..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 4568999999999999999999999764 4667899999999999999999999999988544 477888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
.+.|++.++.++++. |+. . .+..+|..+...|.|++|..+|.++ ..|..+|.++.++|+
T Consensus 105 ~Klg~l~e~e~f~~~-----pn~-~-------a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ----CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHcC-----CcH-H-------HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 999999999888852 432 2 4889999999999999999999976 478899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
+++|++.++++ .++.+|...+.++...|+++.|..+... +...|+. +..+...|...|.+++|+
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----------l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----------LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----------HHHHHHHHHHCCCHHHHH
Confidence 99999999999 4789999999999999999999877665 3344433 223556677789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP-----HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
.++++++..++....++..+|.++.+- ++..+.++.|...+.+.| .++..|..+..+|...++++.|+...-+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 999999999999999999999988764 577788888887777777 7888999999999999999999987766
Q ss_pred HHcc------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 360 ALSI------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI--AANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 360 al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
.... .+.+.++++.....|. +....++..+..++ .++++ .....+.+.|+..-...++
T Consensus 308 h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 308 HPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHH
T ss_pred CChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHH
Confidence 5444 5677888888888877 55566677888877 44442 3345567788888888887
Q ss_pred HHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 426 EQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
+.+...+-. + .|-.+--.++...+.+.+
T Consensus 380 ~~v~~~n~~---~-vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 380 RSVQNHNNK---S-VNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHHHTTCCH---H-HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHH---H-HHHHHHHHHHhhhhHHHH
Confidence 666544322 1 233334445555555444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-16 Score=163.13 Aligned_cols=357 Identities=11% Similarity=-0.037 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESYH 140 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 140 (595)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......|+ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH----
Q 007634 141 KALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS---- 202 (595)
Q Consensus 141 ~~l~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~--------~~A~~~~~~~l~~----~~~~~~~~~~la~~~~---- 202 (595)
+++...| .+.+.|.. ........++. +...+.|++++.. ++....+|........
T Consensus 128 Ral~~~~~~~sv~LW~~-------Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLS-------YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHTCSSSCCCCHHHHHH-------HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCCCCCHHHHHH-------HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999984 45555433 22222223332 3344777877764 6667777766665543
Q ss_pred -----HcCCHHHHHHHHHHHHHhCCCCH-HHHHHH---------------------------------------------
Q 007634 203 -----ELMQYDTALGCYEKAALERPMYA-EAYCNM--------------------------------------------- 231 (595)
Q Consensus 203 -----~~g~~~~A~~~~~~al~~~~~~~-~~~~~l--------------------------------------------- 231 (595)
..++.+.+..+|++++....... ..|...
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 24456778888888875321111 111000
Q ss_pred --------------------------HHHHHHcCC---------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 232 --------------------------GVIYKNRGD---------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 232 --------------------------a~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
..+-+...+ .+.....|++++...|.++..|...+..+..
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----- 355 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE----- 355 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----
Confidence 000000000 1223456777777777777776666655544
Q ss_pred hhcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------CCC-----------C
Q 007634 277 KLEGDINQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------C 333 (595)
Q Consensus 277 ~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----------~~~-----------~ 333 (595)
.|+.++|. ..|++++...|.+...+..++.+....|++++|...|++++.. .|. .
T Consensus 356 --~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 356 --KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp --HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 45677886 9999999999988888899999999999999999999998874 242 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
..+|...+.+....|+.+.|...|.+|++. .+....++...|.+....++ ++.|...|+.+++..|+++..+...+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 457888888888888999999999999887 44456677777777766654 8999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 007634 412 YRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
....|+.+.|...|++++...|+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC
Confidence 88899999999999999998874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=160.30 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=148.3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCC
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l~~~~ 331 (595)
.+...|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34455666667899999999999999999999999999 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|+ ...+...+++++...|. ..+++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987764 45667778777643332 34788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.++...|++++|+.+|+++++++|+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-19 Score=152.75 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
..+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.+... +..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~ 81 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------ATV 81 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555544333 344
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 44444445555555555555555555555555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCcH
Q 007634 243 SAIACYERCLAVSPNFE 259 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~ 259 (595)
+|..+++++++..|++.
T Consensus 162 ~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 162 EALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCch
Confidence 66666666665555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=153.44 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=65.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 007634 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (595)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|++..+ +..+|.++.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-------~~~lg~~~~ 76 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-------HRFLGLLYE 76 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444333 333444444
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC-YEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444444444445555555555544443332 34455555555555544444444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=154.55 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=158.9
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH---HH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AH 119 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 119 (595)
.+++.++.+|..++..|+|++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++. ++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 3577899999999999999999999999999998864 78999999999999999999999999999999864 78
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 120 THCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 120 ~~la~~~~~------------------~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+.+|.++.. .|++++|+..|+++++..|++..+... ...++.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------ 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------ 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH------------
Confidence 999999876 579999999999999999998765322 1112111110
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 182 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 146 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122345788999999999999999999999998875 678999999999999999999999988888875
Q ss_pred H
Q 007634 259 E 259 (595)
Q Consensus 259 ~ 259 (595)
.
T Consensus 218 ~ 218 (225)
T 2yhc_A 218 L 218 (225)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-17 Score=152.99 Aligned_cols=198 Identities=11% Similarity=0.035 Sum_probs=159.7
Q ss_pred HHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 54 YANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 54 ~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
......+.|++. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 334445677776 78999999999999999999999999988776 6889999999999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
+.++...++ +++++.++.++++.+|.+..+ |...+.+....|. ++++++++.++++.+|.+..+|..++.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A-------W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999998884 889999999999999999887 4455555555677 589999999999999999999999998
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhc
Q 007634 200 VYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAV 254 (595)
Q Consensus 200 ~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~ 254 (595)
++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 88877 4588899999999999999988887665555544 2355566666666666
Q ss_pred CCCc
Q 007634 255 SPNF 258 (595)
Q Consensus 255 ~~~~ 258 (595)
.|++
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=166.77 Aligned_cols=226 Identities=18% Similarity=0.228 Sum_probs=177.7
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHhhHHHHH
Q 007634 203 ELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIAL 269 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~ 269 (595)
..|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++... ++.+ ..+.++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 345666666666666552 24567788888999999999999999999888774 3322 245577
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 333 (595)
..+|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.+++++++. .|..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 78888888899999999999999988 4666789999999999999999999999999998 6667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhC
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKM------DAAAEMIEKAIAAN 398 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~ 398 (595)
..++..+|.++...|++++|+.+++++++. .+.....+..++..+...+.. .++...++......
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999986 455566777777777765543 34444444443345
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
|....++..+|.+|..+|++++|..+|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6667899999999999999999999999999863
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-17 Score=149.90 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=144.4
Q ss_pred HhCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 169 LAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 169 ~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
..|.+. +|+..+.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345544 78888888888888888888888888877665 5677777777777777777777777777777
Q ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--
Q 007634 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-- 313 (595)
Q Consensus 238 ~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 313 (595)
.++ +++++.++.++++.+|.+..+|.....++..++. .++++++++.++++.+|.+..+|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 763 6677777777777777766666666655555431 145666666666666666666666666665554
Q ss_pred ------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 314 ------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 314 ------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
+.++++++++.+++..+|++..+|+.+..++... |.. . ++ -..
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~---------------~-------~~--~~~ 250 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC---------------E-------LS--VEK 250 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG---------------G-------CC--HHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc---------------c-------cc--hHH
Confidence 2344555555555555555555554333333322 100 0 00 000
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+.++++++.++++++..|++..++..++.+.. ..|..++...++.+..++||-....+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 134566666666666666666444433333222 24556666667777777776655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-18 Score=152.00 Aligned_cols=183 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
++..++.+|..++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++..|++... .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH----H
Confidence 567899999999999999999999999999999864 689999999999999999999999999999998753 1
Q ss_pred HHHHHhHHHHHH------------------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKL------------------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 158 ~~~~~l~~~~~~------------------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
.+++.+|.++.. .|++++|+..|+++++..|++..+...+..+....+
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------- 144 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------- 144 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------
Confidence 224455555544 456666666666666666665544322211111000
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
........+|.++...|++++|+..|+++++..|+++ .++..++.++..+|........++.
T Consensus 145 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 145 ---RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0112336789999999999999999999999999986 6788999999999987655444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=166.17 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=131.6
Q ss_pred hCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 007634 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (595)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~ 161 (595)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++... ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45556666666666552 25567788888888888889989988888888764 33333 355689
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~ 225 (595)
.+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 67778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
.++..+|.++...|++++|+.+++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=140.85 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=78.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.++|+.++.+..+|..+++.|++++|+.+|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45666666666666666666777777777777776667666677777777777777777777777777777776777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|.++..+|++++|+..|+++++++|++.+++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777777777777777777766665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=139.86 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=114.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
+..++|+.++.+..+|..++..|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|++..++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
..+|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-16 Score=146.69 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=156.6
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
+.....+....+..++|++.+.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333444455567789999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred -C-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 239 -G-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 239 -~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+ ++++++.++.++++.+|++..+|.....++..++..-. ....+.++++.++++++.+|.+..+|...+.++...++
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 8 99999999999999999999999999988888763210 01113478888888888888888888888888877776
Q ss_pred -------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 316 -------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 316 -------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
++++++++.+++..+|++..+|+.+..++...|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 57777777777777777777777777777666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=147.14 Aligned_cols=168 Identities=13% Similarity=-0.003 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007634 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (595)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~ 158 (595)
|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344455666666666777777777777777777777777777777777777777777777777666666 5443221111
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYK 236 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~ 236 (595)
+. +...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 82 ~~------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LE------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HH------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HH------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 10 1112233456788888888888888888888888888888888888888888888764 558888888888
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007634 237 NRGDLESAIACYERCLA 253 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~ 253 (595)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 88888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-19 Score=145.43 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=146.99 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.....++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Q 007634 128 -DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSEL 204 (595)
Q Consensus 128 -~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~ 204 (595)
..+...+|+..++++++.+|++... +..+|.++...|++++|+..|+++++.+|+. ..++..+|.++...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFEL-------ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 3334456899999999999999877 7788888889999999999999999999875 66999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKAAL 219 (595)
Q Consensus 205 g~~~~A~~~~~~al~ 219 (595)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=147.81 Aligned_cols=186 Identities=17% Similarity=0.055 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 49 ~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
...+..-......+ ..++|+.++++++..+|++..+|...+.++...| .+++++..+.+++..+|++..+|...+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34444444444444 4468999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--------HHHHHHHHHHhhCCCCHHHHHH
Q 007634 127 KDE-G-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--------DGIQKYYEALKIDPHYAPAYYN 196 (595)
Q Consensus 127 ~~~-g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--------~A~~~~~~~l~~~~~~~~~~~~ 196 (595)
... + ++++++.++.++++.+|++..+ |...+.+....|.++ ++++++.++++.+|.+..+|..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~A-------W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHT-------WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHH-------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 887 7 8889999999999999988776 677777777777666 7888888888888888888888
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 197 LGVVYSELMQ-------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 197 la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
++.++...+. ++++++++.+++..+|++..+|+.+..++...|+.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 8888877776 67777777777777887777777777777666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=153.65 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----- 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ----- 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH-----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH-----
Confidence 488899999999999999999999999999999999999999999999999999999999999999999954332
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~ 235 (595)
....+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++
T Consensus 188 --~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 --GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp --HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 44555566777889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 007634 236 KNRGDLESAIACYERCLA 253 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~ 253 (595)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=157.30 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=134.1
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
+..|++.+|..+++++.+..+.. ++. .+++++|+..|.++ |.+|...|++++|+.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 35688999999999998876642 111 58899999998876 567888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~ 211 (595)
.|.+++++.+.... ....+.++..+|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99999987654322 2234667888899999999999999999998887432 24577788888888 8888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 212 GCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 212 ~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.+.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8888888876532 567778888888888888888888888876554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=158.89 Aligned_cols=209 Identities=20% Similarity=0.178 Sum_probs=127.1
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
.|++++|.++++++.+..+.. ++. .+++++|...|.++ |.+|...|++++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 456667777776666554431 122 46666666666654 45566667777777777
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
.+++.+.+.... ....+ .++..+|.++...|++++|+.+|+++++
T Consensus 60 ~~al~~~~~~~~-~~~~a----------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHAA----------------------------------KAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHHHHTTC-HHHHH----------------------------------HHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHH----------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776655432211 11122 3444555566666666666666666655
Q ss_pred hCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 329 FNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 329 ~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
+.+. ...++.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.
T Consensus 105 l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 105 MYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5221 13456667777766 77777777777777665432 45667777777777777777777777777
Q ss_pred hCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 397 ANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 397 ~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.|++ ..++..+|.++..+|++++|+.+|++++ ++|+.....
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 64432 2366677777777777777777777777 777665443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=154.47 Aligned_cols=240 Identities=12% Similarity=0.016 Sum_probs=189.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
+..|.-+ ..+++..|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|.....++.+.-
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3444444 57899999999999999999999999999 889999999999999999999988876544433111
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
.| |.+-... ..-.++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.
T Consensus 90 ~y---~~~~~~v-----------------~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 90 LY---GDITYPV-----------------TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp TT---CCCEEEC-----------------SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT
T ss_pred cc---ccccccc-----------------CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc
Confidence 11 0000000 01145677788999999999999999999999999888 999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~ 422 (595)
+++++|+.+|+++....+.. ..+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|.
T Consensus 149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999887753221 4589999999999999999999999998654 55 6789999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHH
Q 007634 423 DAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (595)
Q Consensus 423 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
..|++++..+|+ ..+. ..+....|...-+..+.+
T Consensus 229 ~~l~~a~a~~P~-~~~~-~aL~~~~~~~~~t~~~~i 262 (282)
T 4f3v_A 229 ALLEWLQTTHPE-PKVA-AALKDPSYRLKTTTAEQI 262 (282)
T ss_dssp HHHHHHHHHSCC-HHHH-HHHHCTTCCCCCCCHHHH
T ss_pred HHHHHHHhcCCc-HHHH-HHHhCCCCCCCCCcHHHH
Confidence 999999999999 5554 334555565555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=150.60 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=136.1
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 34444455567888888888888888888888888888888888888888888888888888777677777777888888
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
.++|+..|++++..+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++|...|++
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888887 78888888888888888888888888
Q ss_pred HHh
Q 007634 428 CLK 430 (595)
Q Consensus 428 al~ 430 (595)
++.
T Consensus 281 al~ 283 (287)
T 3qou_A 281 QLY 283 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-17 Score=168.06 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (595)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 217 (595)
++++.+|++... +..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|+..++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999988765 777888888889999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 007634 218 ALERPMYAEAYCNMG 232 (595)
Q Consensus 218 l~~~~~~~~~~~~la 232 (595)
++.+|.....+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998877776665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=138.68 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
+-..+++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=148.32 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHcCCCcHH---
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNAC--- 117 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 117 (595)
...+|..|.-+ ..+++.+|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45678888876 69999999999999999999999999999 89999999999999999999998876433
Q ss_pred ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 007634 118 ------------------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 118 ------------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
+...++.++...|++++|.+.|..++...|.+. . .+.+|.++...+++++|+..
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-------~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-------AWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-------HHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-------HHHHHHHHHHcCCHHHHHHH
Confidence 445588999999999999999999988877654 3 67788899999999999999
Q ss_pred HHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 180 YYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
|+++....+. ...+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9977664322 14589999999999999999999999998654 55 6789999999999999999999999999999
Q ss_pred CCCcHHHHhh
Q 007634 255 SPNFEIAKNN 264 (595)
Q Consensus 255 ~~~~~~~~~~ 264 (595)
+|+ ..+...
T Consensus 238 ~P~-~~~~~a 246 (282)
T 4f3v_A 238 HPE-PKVAAA 246 (282)
T ss_dssp SCC-HHHHHH
T ss_pred CCc-HHHHHH
Confidence 998 655443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=135.55 Aligned_cols=119 Identities=10% Similarity=-0.006 Sum_probs=106.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45778888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
++.+++.+|.++..+|++++|+.+|+++++++|+++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999988877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-18 Score=162.95 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=160.6
Q ss_pred cCCHHHHHHHHHH----HHhcCCCcHHHHhhHHHHHHHhhhhh------------hhcCCHHHHHHHHHHHHhhCCCCHH
Q 007634 238 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 301 (595)
Q Consensus 238 ~~~~~~A~~~~~~----al~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~ 301 (595)
.+.+++|+..++. ++.+.|... +...|... ...+++++|+..+++++...|....
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a---------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA---------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT---------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc---------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 3456777777777 667777641 22222221 1456777888888888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
++..+|.++...|++++|+..|++++.+.|.+ ..++.++|.++...|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (595)
+..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 56777776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=124.25 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
.|++++|+..+++++...|.+..++..+|.++...|++++|..+++++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-18 Score=160.71 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=167.8
Q ss_pred hCCCHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 60 SRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 60 ~~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
..+.+++|+..++. ++...|.. ++...|.... .++++++|+..+++++..+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 35578899998888 88888876 4555554432 567788899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.++...|++++|+..|++++.+.|.+. ......+.++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999873 122223456899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 254 (595)
.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5567776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-15 Score=131.92 Aligned_cols=173 Identities=17% Similarity=0.069 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC----CHHHH
Q 007634 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----DINQG 285 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A 285 (595)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+ +..+|.++.. + ++++|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a-------~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDA-------LALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH-------HHHHHHHHHc-CCCCCCHHHH
Confidence 44445554443 34555555555555555555555555555432 12211 1112222222 1 34444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVE 355 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~ 355 (595)
+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|+.
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 444444422 2344455555555554 4555555555555555444 224555555555555 445555555
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHh
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 397 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 397 (595)
+|+++++. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555544 33444555555554432 1 455555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=147.19 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=164.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..+..+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..|+++++++|++............ ...++...........+.+..+...++.++ .|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999999998876432111111111 122223333334456777777777777765 79
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 254 (595)
++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888888888877776 7789999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=132.10 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
...+++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
+++.+++++|.++...|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=133.80 Aligned_cols=177 Identities=14% Similarity=0.018 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007634 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG----RLVEAAESYH 140 (595)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (595)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. +++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3678899998875 78999999999999999999999999999875 689999999999998 7 8999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE----LMQYDTA 210 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~g~~~~A 210 (595)
++.+ +.++.+ +..+|.++.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|
T Consensus 78 ~A~~--~g~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE--AGSKSG-------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH--TTCHHH-------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH--CCCHHH-------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9976 455555 6777777776 7899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNR-G-----DLESAIACYERCLAVSP 256 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~~ 256 (595)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66788999999999864 3 89999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=130.22 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677777888888888888888888889999999999888888888888888999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888899999999999999999999999988888776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=142.21 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=139.2
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
.+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|++..+++.+|.++...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 318 (595)
|++++|+..|+++++++|++.............. .+
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------------------------------------~~ 121 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------------------------------------------AK 121 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------------------------------------------HH
Confidence 9999999999998888775432111111111110 01
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 397 (595)
+...........+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 122 KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11111122233455555555555544 57777888888888888887777777777666665 6677788888777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=129.06 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
++.+++.+|.++...|++++|+..|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-15 Score=130.67 Aligned_cols=134 Identities=16% Similarity=0.288 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+.+|+++++.+|++..++.++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346778889999999999999999885 33 688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
.|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999999999999877655 99999999999999999999999999999998744
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-15 Score=119.69 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHH
Q 007634 380 VQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYR 413 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~ 413 (595)
..|++++|+..|+++++++ |++..++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 5555555555555555555 555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-12 Score=127.77 Aligned_cols=371 Identities=9% Similarity=-0.052 Sum_probs=258.4
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc---CCCcHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (595)
..++..+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4678889999988888999999999999999888 88888888888777764 45577788888875 6788888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHH------hHHHHHHhCChHHHHHHHHHHHhhCCC-
Q 007634 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTD------LGTSLKLAGNTQDGIQKYYEALKIDPH- 189 (595)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~a~~~~~------l~~~~~~~~~~~~A~~~~~~~l~~~~~- 189 (595)
....+. ..|+.+.+..+|++++..-+.+.+.... ....-.. ........+.+..|...++.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 877654 3567889999999999953332221111 0000000 000111223445555556555544322
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 190 YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 190 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
....|......-... |- .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 344555544432221 11 345778999999999999999999999999999999999999999999 9876554
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHH------HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKA------LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 336 (595)
...+... .+... ++.....+... ....+....+|...+......++.+.|...|+++ ...+.....
T Consensus 250 ~~y~~~~-e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v 321 (493)
T 2uy1_A 250 LYYGLVM-DEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHV 321 (493)
T ss_dssp HHHHHHT-TCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHH
T ss_pred HHHHhhc-chhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHH
Confidence 4322210 11100 11111100000 0000112356778888888888899999999999 433345677
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 337 CNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 337 ~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
|...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +.....|......-...
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 777777766666 5999999999999999998888888888888999999999999987 45678888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 007634 416 GSISLAIDAYEQCLK 430 (595)
Q Consensus 416 g~~~~A~~~~~~al~ 430 (595)
|+.+.+...++++++
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=131.03 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=113.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHhcCCH--HH
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DA 386 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~ 386 (595)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999999987644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=118.21 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.6
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++..+|..+...|++++|+..+++++...|.+...+..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
|++++|+..++++++..|.+..++..+|.++...|++++|...+++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=155.58 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=174.6
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 54 YANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 54 ~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
........|++ ++|+..+++++..+|++..+|...+.++...|+ +++++..+.++++.+|++..+|...
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33444555655 577999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEG--RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
+.++...+ ++++++.++.++++.+|.+..+ |...+.+....| .++++++++.++++.+|.+..+|..++.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~a-------W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccH-------HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 99999999 7799999999999999999888 555566666677 8999999999999999999999999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHh
Q 007634 200 VYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES------------AIACYERCLA 253 (595)
Q Consensus 200 ~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~------------A~~~~~~al~ 253 (595)
++... +.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~ 266 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLT 266 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEEC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecccee
Confidence 99885 568999999999999999999999999999999988666 5555677776
Q ss_pred cCCC
Q 007634 254 VSPN 257 (595)
Q Consensus 254 ~~~~ 257 (595)
++|.
T Consensus 267 ~~~~ 270 (567)
T 1dce_A 267 VGSR 270 (567)
T ss_dssp TTBT
T ss_pred cccc
Confidence 6665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=119.74 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
..+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCChhhhhhH
Q 007634 412 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 442 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~ 442 (595)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7776665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=131.70 Aligned_cols=188 Identities=11% Similarity=-0.031 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (595)
Q Consensus 176 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 253 (595)
|+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77888888777666677778999999999999999999999999887 8899999999999999999999999999998
Q ss_pred cCCC----cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 254 VSPN----FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 254 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
.+|+ +......++..+..+.. ..+++.+|...|+++.+..|+. ...+++ ++..+|++++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~---g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFAT---NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH---TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 8883 22333444444333221 1236777777777776666652 222222 6666666666666666555
Q ss_pred hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 328 HF----------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 328 ~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
+. +|+++.++.+++.+....|+ +|.++++++.+.+|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 54 35566666666666666665 56666666666666665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=122.45 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcC
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV--LYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~ 432 (595)
..|++++|+.+++++++.+|++..++..++. .+...|++++|+..+.++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999999999988888754444 4888899999999988876653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=130.96 Aligned_cols=246 Identities=13% Similarity=-0.018 Sum_probs=187.1
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
-.+..|+|..++.-. -+..|.+ ....+.+.++|..+|++.... . .+....+...++..+. ++ |
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc---H
Confidence 345579999999843 3344433 356667788899999887421 1 1122334444554442 22 8
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+..+++.+...+...... ..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~-------~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYEL-------YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTSCCCHHHH-------HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 889998887754444333 3455566667899999999999999887 7899999999999999999999999
Q ss_pred HHHHHhhCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 323 YELAFHFNPH------CAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIE 392 (595)
Q Consensus 323 ~~~~l~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (595)
++++.+.+|+ .......-|++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|...++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9999999983 2333333455566666 999999999999988887 3344444 8999999999999999
Q ss_pred HHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 393 KAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 393 ~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+++. +|+++.++.++..+...+|+ +|.+++.++.+.+|+++...
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 88776 48899999999999999998 89999999999999998553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=152.51 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--KF 316 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~ 316 (595)
++|+..+.+++..+|++..+|...+.++..++.. ......+++++..++++++.+|++..+|...+.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 4556666666666666666555555555554310 000113899999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc--------------
Q 007634 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------------- 381 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------- 381 (595)
++++..++++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 99999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCCC
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 435 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 435 (595)
+.+++|++++.+++..+|++..+|+.++.++...+++++ |+.+|.+++.++|..
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999998776 566688888888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-14 Score=133.39 Aligned_cols=177 Identities=12% Similarity=0.015 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
+|.....+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+..+++++...+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556777889999999999999999999999887654 34667889999999999999999999987665433
Q ss_pred HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 007634 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM- 223 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 223 (595)
.. ..+.++..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VY-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TT-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 22 246678999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 224 -----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (595)
Q Consensus 224 -----~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~ 255 (595)
...+++++|.++...|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 278899999999999999999 88899988653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=132.48 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 303 (595)
....+...+..+...|++++|+..+.++++..+...... ..... +
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~~----------------------------------~ 118 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQW----------------------------------Q 118 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHHH----------------------------------H
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHHH----------------------------------H
Confidence 345566677788888888888888888888777644321 11222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMAL---SIKPNFS----QS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~ 370 (595)
+.+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 334455555555555555555555443222 3456666666666666666666666666 3334322 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (595)
+.++|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 667777777777777777777777665322 256777777777777777777 66677777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-15 Score=124.38 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
+..+..+..+|.++...|++++|+.+|+++++++|++..++.++|.++...|++++|+.+|+++++++|+++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++..+|++++|+.+|+++++++|++..++....+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887666533
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=128.41 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=133.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
..+..+|..+...|++++|+..|++++ . .++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345667777888899999999999995 3 3789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
.|++++|+..|+++++..|.+. .++.++|.++...|++++|+..|+++++.+|+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------- 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--------
Confidence 9999999999999999888766 8999999999999999999999999999999862
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p 433 (595)
.+..++|+..+.+.....|
T Consensus 156 ----~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ----HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ----GGHHHHHHHHHHTTCCCCC
T ss_pred ----cchHHHHHHHHHhcccccc
Confidence 3455666666665544443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=134.30 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc------H
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------A 116 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 116 (595)
..+...+..++..|+|++|+..++++++..+.++. .+..+|.++...|++++|+..|+++++..+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 44556788999999999999999999998777655 33458888888999999999999999965442 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.+|...|++++|+.+|+++++.....+......+.++.++|.++...|++++|+.+++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 37899999999999999999999999964322111222345567777777777777777777777777653322
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 007634 191 APAYYNLGVVYSELMQ-YDTALGCYEKAALE 220 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 220 (595)
+.+++.+|.++..+|+ +++|+.++++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5566666666666663 46666666666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=126.84 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=119.9
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 352 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~~~~--~~ 352 (595)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
|+.+++++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=120.23 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------F-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 397 (595)
.+..+|..+...|++++|+..|+++++++|+ + ..+|.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555555555555555555555555555 2 338888999999999999999999999988
Q ss_pred -CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 398 -NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 398 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999988766553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=116.06 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+.++..+|..++..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999988877777788888
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
..+|.++...|++++|++.|++++...|+ +....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 99999999999999999999999888775 44433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=117.43 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-15 Score=132.84 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=117.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 342 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~la~ 342 (595)
.+.++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34566665555554444455567788889999999999999999999998888776 88889999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred -HHHHHHH
Q 007634 423 -DAYEQCL 429 (595)
Q Consensus 423 -~~~~~al 429 (595)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=132.36 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=136.8
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNL 340 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l 340 (595)
...+...+++++|...+++++...+..+. .+..+|.++...+++++|+.++++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555678999999999999998877655 33458999999999999999999999964432 3479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (595)
|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+.. +.++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999953 22335689999999999999999999999999875433 789999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007634 408 LGVLYRDAG-SISLAIDAYEQCLKIDP 433 (595)
Q Consensus 408 la~~~~~~g-~~~~A~~~~~~al~~~p 433 (595)
+|.++..+| ++++|+.+|++++.+..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 999999999 57999999999998754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=116.49 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
.....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|++..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
+...|++++|+.+++++++.+|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-14 Score=114.65 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=111.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
........++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~ 171 (595)
|.++...|++++|+..|++++..+|.+... +..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEA-------ADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhc
Confidence 999999999999999999999999988776 444555544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=121.63 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
+.....+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
++..+|++++|+.+|+++++++|++..++..++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998877666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=115.16 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCh
Q 007634 416 GSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~ 436 (595)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=114.78 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+.++.++|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|++...+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999988877666666777777
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
.+|.++...|++++|++.|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777777777888888888877777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=117.11 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=124.5
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 342 (595)
...+..+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHh
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV--VYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 397 (595)
++...|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999988855544 488899999999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=130.17 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AEC 155 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~ 155 (595)
....+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++.. ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 33445555666777777766666555555666777777888888888888888888888777765411 011
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
...++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 23558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHH-HHHHHH
Q 007634 236 KNRGDLESAI-ACYERC 251 (595)
Q Consensus 236 ~~~~~~~~A~-~~~~~a 251 (595)
...++..++. ..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9888877776 444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-14 Score=140.65 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
...+..|..+...|+|++|++.|.++++..|.........+......+..+ .++..+|.+|..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y~~ 67 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLYVT 67 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHH
Confidence 456778888888899999999998888888776544333322222222222 234667888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYS 202 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~ 202 (595)
.|++++|.+.+.+++...+...... ....+...+|.++...|++++|+.++++++... +....++..+|.++.
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888888888888877655543321 223446667777778888999999888887652 234678889999999
Q ss_pred HcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 203 ELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
..|++++|+..+++++.. .+....++..+|.+|...|++++|..++++++...+.........+.++..+|..+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 999999999999998875 23346789999999999999999999999998875543333344567777888888
Q ss_pred hhcCCHHHHHHHHHHHHhh
Q 007634 277 KLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~ 295 (595)
...+++.+|..+|.+++..
T Consensus 227 ~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 8888888888888887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=109.24 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56677777788888888888888888887777777777888888888888888888888888777777777778888888
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
..|++++|+.+++++++.+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888878877777777777776554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-15 Score=149.77 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=131.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 342 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~ 342 (595)
..+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567777878888888888888999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 007634 423 DA 424 (595)
Q Consensus 423 ~~ 424 (595)
..
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=115.55 Aligned_cols=110 Identities=17% Similarity=0.067 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHc---
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (595)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
+|++..+| +.+|.++..+|++++|+..|++++++.|++......+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999876654333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=112.51 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH
Q 007634 129 EGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
.|++++|+..|+++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-14 Score=114.14 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
|.++..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=112.85 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=112.9
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (595)
...|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCC
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~ 417 (595)
+|.++...|++++|+..|+++++++|+ +..+...+..+......
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66777777776655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=111.24 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 007634 128 DEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
..|++++|+..++++++..|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccc
Confidence 4444444444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=106.66 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (595)
.+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444444455555555455555555555555444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
|++++|...++++++.+|+++.++..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555544444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=117.66 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 361 (595)
...+...|..++..|++++|+..|++++.. +|....++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666666777777777777666665 33333444444444444444444444444444
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+++|+++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 44444444444444444444444444444444444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-15 Score=148.77 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..+..+|..+...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.++.++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCChhhhh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNAGQ 440 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~~ 440 (595)
+|++++|+..|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+...+..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 9999999999999999999998888888888 888899999999999 88888887755543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=120.73 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=113.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHcCC
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK------LDPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 131 (595)
++..|++++|...++.+....+....++..+|.++...|++++|+..++++++ ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655443336788999999999999999999999999998 344566789999999999999
Q ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHH
Q 007634 132 LVEAAESYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYS 202 (595)
Q Consensus 132 ~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~ 202 (595)
+++|+..+++++.. .+++. ...+.++..+|.++...|++++|+..+++++...+. + ..++..+|.++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDP---LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999987 33222 123555777777777777777777777777654211 1 223455555555
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 007634 203 ELMQYDTALGCYEKAALE 220 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~ 220 (595)
..|++++|+.++++++++
T Consensus 159 ~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=119.70 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=132.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~ 351 (595)
..|++++|.+.++......+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666555544466889999999999999999999999999984 3445788999999999999999
Q ss_pred HHHHHHHHHHcc---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCH
Q 007634 352 KAVECYQMALSI---KPN----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 352 ~A~~~~~~al~~---~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 418 (595)
+|+.++++++++ .++ ...++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 442 356789999999999999999999999997632 12 34578999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 007634 419 SLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 419 ~~A~~~~~~al~~~p~~ 435 (595)
++|..++++++++....
T Consensus 164 ~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999875543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=113.91 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK------------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
..+..+...|..++..|+|++|+..|++++.. +|.+..++..+|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35778999999999999999999999999998 677778999999999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+++++|+++.+++.+|.++...|++++|+..|++++.++|++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999987
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-11 Score=123.07 Aligned_cols=326 Identities=7% Similarity=-0.075 Sum_probs=181.3
Q ss_pred hCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHH
Q 007634 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (595)
Q Consensus 60 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (595)
..| ++..|..+|++++...|. |+++.+...|++++...| +.+.|..........+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488999999999998886 889999999999999888 77788887777776663 355677
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (595)
Q Consensus 138 ~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (595)
.|+.++.. ++.+...|......+.... ...++.+.+...|++++...+....-+...-..+....+...+...+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~---~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIE---DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCS---SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhch---hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888874 5556555443332211100 12456788999999999864333332222222222222222232222
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhh--hhcCCHHHHHHHHHH
Q 007634 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKK 291 (595)
Q Consensus 215 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 291 (595)
.+.. +.+..|...++.+....+. ....|...... ..+.-. ...+........|++
T Consensus 147 ~~~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 147 GDTL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHH
Confidence 2211 1233344444444332221 11122211111 100000 000013456788999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH----------------------------
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---------------------------- 343 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~---------------------------- 343 (595)
++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999 8876655544433
Q ss_pred ------------HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 344 ------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 344 ------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
....++.+.|...|+++ ...+.....+...|.+....+ +.+.|...|+.+++..|+.+..+...+.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11233444555555555 222222334444444433333 3555555555555555555554444455
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~a 428 (595)
.....|+.+.|...|+++
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-14 Score=144.00 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHH
Q 007634 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~l~~~~~ 168 (595)
++++|+..|+.+++..|+....+..+|.++...|++++|+..|++++.+.|.+. ........++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444331 112223455788888888
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC- 247 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~- 247 (595)
..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888877643
Q ss_pred HHHHH
Q 007634 248 YERCL 252 (595)
Q Consensus 248 ~~~al 252 (595)
+.+++
T Consensus 409 ~~~~f 413 (457)
T 1kt0_A 409 YANMF 413 (457)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 44433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=110.27 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
|.....+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..++++++.+|+++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444444444444444444444444444444444 4444555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+|.++...|++++|+.+|+++++++|++..++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 55555555555555555555555555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 407 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 407 (595)
+|+++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++.+|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46667777788888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q 007634 408 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 408 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 436 (595)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=103.96 Aligned_cols=66 Identities=36% Similarity=0.427 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+++.+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 334444444444444444444444444444444444444444444444444444444444433333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=103.13 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
...|++++|+..++++++.+|++...+..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999887744433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=134.69 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (595)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 343 (595)
..+..+..+|..+...|++++|+..|++++...|.+. .+...+++.++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3455666667777777777777777777776666543 1222333333333221 1478899999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 422 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 422 (595)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44567788889
Q ss_pred HHHHHHHhcCCCChh
Q 007634 423 DAYEQCLKIDPDSRN 437 (595)
Q Consensus 423 ~~~~~al~~~p~~~~ 437 (595)
..|.+++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=106.14 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (595)
++.+|.++...|++++|+..|+++++..|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555555555444 455555555555555555555555555555554 445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++..+|++++|+..|+++++.+|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-12 Score=105.15 Aligned_cols=113 Identities=21% Similarity=0.143 Sum_probs=106.3
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
.......++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34678899999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
.+|.++...|++++|+..|++++..+|++...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 999999999999999999999999999988774443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=105.24 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (595)
+.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999999 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
|.++...|++++|+..|++++...|++.....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999999999876643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=110.88 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--- 415 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 415 (595)
.+++|++.++++++++|+++++|.++|.++...++ +++|+..|+++++++|+...+++++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 44444555555555555555555555554444443 45777777777777777777777777777766
Q ss_pred --------CCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 416 --------GSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 416 --------g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
|++++|+++|++|++++|++...+.+
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999998765544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=136.63 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=122.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34466788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCc
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 401 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 401 (595)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ +++...|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999998 889999999999999 777776653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-13 Score=103.84 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHH
Q 007634 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 373 (595)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 373 (595)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhCCCc
Q 007634 374 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 374 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 401 (595)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=107.05 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLN 372 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~ 372 (595)
+..+..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666665544 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.+|.++...|++++|+.+|+++++..| ++.....++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666666666666666666666655 35555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=126.56 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
.+..+|..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+.+++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 455566666666666666666666665 6677788888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999988888888777643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-12 Score=126.39 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----------------AEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
.....|..+...|++++|++.|.++++..|.. ..++..+|.+|...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666655542 2357788889999999999999988888776
Q ss_pred CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
+...... ....+...++.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 5543322 223456667777888889999999998888653 223668889999999999999999999998875
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 330 ------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 330 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
.+...+++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233467889999999999999999999999987632 22 35677888889999999999999999887
Q ss_pred h
Q 007634 397 A 397 (595)
Q Consensus 397 ~ 397 (595)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=107.78 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---- 381 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---- 381 (595)
+++|+..++++++++|+++++|+++|.++...++ +++|+..|+++++++|++..+++++|.+|..+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 4444444444444444444444444444444433 45777777777777777777777777777666
Q ss_pred -------CCHHHHHHHHHHHHHhCCCcH
Q 007634 382 -------GKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 382 -------g~~~~A~~~~~~al~~~p~~~ 402 (595)
|++++|+.+|+++++++|++.
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 478888888888888888764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=126.47 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HH
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 379 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~ 379 (595)
.++.++|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcH
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
..+..+++...|.+++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-13 Score=105.89 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 347 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
.|++++|+.+|+++++. +|++..++.++|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777888888888887 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCChhhh
Q 007634 424 AYEQCLKIDPDSRNAG 439 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~ 439 (595)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=103.88 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+.........++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45678888888888889999999999888888888888888999999999999999999998888776533333345557
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
..+|.++...|++++|+..|+++++..| ++.....++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7778888888888888888888888777 466666666665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=106.13 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777788888777 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHH
Q 007634 390 MIEKAIAANPTYAEAYN 406 (595)
Q Consensus 390 ~~~~al~~~p~~~~~~~ 406 (595)
.+++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888887766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=108.41 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------H
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------S 368 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~ 368 (595)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456667777777777777777777777664321 2467778888888888888888888887764332 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|..++++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888887632 12467888999999999999999999999887554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-12 Score=121.67 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY----------------YNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
.......+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344445566788888899999999999999999998 6777788999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++.+.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=102.97 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45666677777777777777777777665443211 12334567777777888888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
..++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999988887632 12567888899999999999999999998876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=90.75 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred C
Q 007634 399 P 399 (595)
Q Consensus 399 p 399 (595)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-11 Score=97.50 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (595)
+..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666665 556666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 007634 408 LGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~ 425 (595)
+|.++..+|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666555554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=85.74 Aligned_cols=83 Identities=42% Similarity=0.596 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
+.++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q 007634 414 DAG 416 (595)
Q Consensus 414 ~~g 416 (595)
.+|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-11 Score=95.42 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc------HHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (595)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHK 141 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (595)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999888877766554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.7e-10 Score=88.03 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 007634 146 DPS 148 (595)
Q Consensus 146 ~~~ 148 (595)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.5e-10 Score=82.99 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcC
Q 007634 127 KDEG 130 (595)
Q Consensus 127 ~~~g 130 (595)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=111.06 Aligned_cols=127 Identities=9% Similarity=-0.026 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC---CH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPN---FS 368 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~---~~ 368 (595)
..+..+..+|+|++|+..+++++++ .++ ....+.++|.+|..+|+|++|+.++++++++ .|+ ..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567889999999999999876 333 3667889999999999999999999999876 344 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
..+.+||.+|..+|++++|+.+|++++++ .|++ .+...+++.++..+|.+++|...|+++.+-
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999976 4554 466788999999999999999999998653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=87.92 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
+..|.++...|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45666677777777777777777777777777 77777777777777777777777777777777666543 4
Q ss_pred CHHHHHHHHHHHHhcCCCCh
Q 007634 417 SISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~ 436 (595)
.+.++...|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 55667777777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=86.01 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|+..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 57777777777777777777777777777777777777777778888888888888888888887777665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=86.80 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (595)
.+..|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887743
Q ss_pred CCHHHHHHHHHHHHhcCCCCH
Q 007634 130 GRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888877776643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-09 Score=84.39 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 007634 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD- 414 (595)
Q Consensus 340 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 414 (595)
+|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+.++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 444444444444444444444443 344444455554444 44555555555555443 334455555555555
Q ss_pred ---cCCHHHHHHHHHHHHhc
Q 007634 415 ---AGSISLAIDAYEQCLKI 431 (595)
Q Consensus 415 ---~g~~~~A~~~~~~al~~ 431 (595)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 45555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=91.17 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=93.4
Q ss_pred hhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhc-----CCHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 389 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~ 389 (595)
+.+|++++.++..|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3477888887777766543 12 457899999999999999 677999999999995 99999999
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 007634 390 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 435 (595)
+|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=85.04 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=106.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~ 354 (595)
.+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46789999999999988754444 999999999999999999999987 679999999999999 89999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...|+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~~ 137 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILNN 137 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHhh
Confidence 999999987 679999999999999 899999999999999874 4566655543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=83.10 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4666666666666666666666666666666666666666666666666666666666666666666544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=104.84 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCCc
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQN 115 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~ 115 (595)
...+..+..+..+|+|++|+.+++++++. .|++ ...+..+|.+|..+|+|++|+.+++++++. .|++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556677788999999999999999985 3445 467899999999999999999999999975 3444
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 116 ---ACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
...+.++|.+|..+|++++|+..|++++++ .|+++.. +.+...++.++..++.+++|...|.++.+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~----~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999874 6777665 44456677777777778888877777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-08 Score=89.80 Aligned_cols=186 Identities=11% Similarity=0.022 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..-.+.+++-++..+|++...+...|..|..-+ ++..|...|.++.+. ...
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~r 119 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALS 119 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHH
Confidence 345677888899999999876666555543221 233555555555431 111
Q ss_pred HHHHHHcCCHHHHHH-----HHHH-HHhcCCCCHHHHHHHHHHHHHhHHH----HHHhCChHHHHHHHHHHHhhCCC--C
Q 007634 123 GILYKDEGRLVEAAE-----SYHK-ALSADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--Y 190 (595)
Q Consensus 123 a~~~~~~g~~~~A~~-----~~~~-~l~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~A~~~~~~~l~~~~~--~ 190 (595)
+ +......+.+++. -+.. +-..+|++.+.....+.++...+.. ....+...+|...++++++++|+ +
T Consensus 120 a-L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 120 S-LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp H-HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred H-HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 1 1111222222222 1222 3345677777766666555443221 12233467899999999999999 6
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 007634 191 APAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 191 ~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~ 258 (595)
..+|..+|.+|... |+.++|..+|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 77999999999995 99999999999999999975 9999999999988 599999999999999988773
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.5e-08 Score=91.20 Aligned_cols=144 Identities=19% Similarity=0.129 Sum_probs=111.7
Q ss_pred HHhhCCCCHHH--HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HH---HHH-HHHH
Q 007634 292 ALYYNWHYADA--MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----LD---KAV-ECYQ 358 (595)
Q Consensus 292 ~~~~~~~~~~~--~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----~~---~A~-~~~~ 358 (595)
+....|.+..+ ++..|..+...+. ..+|+.+|+++++++|+.+.++..++.++..... .. +++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 34445665544 3445666655544 5899999999999999999999888887753211 11 111 1222
Q ss_pred --HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 359 --~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|.+.|.+|+.++|..+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 233567899999999999999999999999999999999975 77889999999999999999999999999999875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-07 Score=84.38 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=112.2
Q ss_pred HHHHcCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 73 IVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 73 ~~l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 147 (595)
++....|.++.+| +..|..++..++ ..+|+.+|+++++++|+++.++..++.+|.. .. ...+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-----------~~--~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-----------RH--SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HH--HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------Hh--ccCC
Confidence 3445566665544 455666665544 4678888888888888888888888777761 01 1112
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007634 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (595)
Q Consensus 148 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 227 (595)
..... .. ....+... ..++..+|..+.++..++..+...|++++|+..+++++.++|+ ...
T Consensus 252 ~~~~~-------~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a 312 (372)
T 3ly7_A 252 LDEKQ-------LA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312 (372)
T ss_dssp CCHHH-------HH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred Cchhh-------HH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHH
Confidence 21111 00 01222221 1334667999999999999999999999999999999999975 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
+..+|.++...|++++|++.|++++.++|..+
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 89999999999999999999999999999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-08 Score=72.45 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 364 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|++++|+.+++++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876555 6888888888888888888888888888888888888888888888888884
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.8e-08 Score=71.40 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888999999999876665 6899999999999999999999999999999999999999999999988873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-08 Score=78.34 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
....+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++..++.+++.+ | +..+++++||..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456777888888888889999999999999988 6669999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhh
Q 007634 424 AYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~~~ 441 (595)
+++++++++|++..+..-
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999999877543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=73.85 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q 007634 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---MGRLAFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.....+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++..++.+ | ++.++++.+|..+++.|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567778888888888999999999999999988 6679999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHH
Q 007634 137 ESYHKALSADPSYKPAAE 154 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~ 154 (595)
.+++++++..|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999988743
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-07 Score=69.96 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (595)
.+++..+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++..+|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 578889999999999999999999999998853 2456788899999999999999999999999999998888
Q ss_pred HHHHH
Q 007634 119 HTHCG 123 (595)
Q Consensus 119 ~~~la 123 (595)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 77665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=68.94 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
+.-++.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|++++|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 234667777777777777777777777777777777776655
Q ss_pred hH
Q 007634 441 NR 442 (595)
Q Consensus 441 ~~ 442 (595)
|.
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-07 Score=88.64 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
++.++|.+|..+|+|++|+.++++++++ .|+....+.+||.+|..+|++++|+.+|++|++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3444555555555555555555555443 122233445555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=90.68 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC---CHHHHHH
Q 007634 310 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPN---FSQSLNN 373 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~ 373 (595)
+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|++++|+.++++++.+ .|+ ....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455666666666666654 2222 345556666666666666666666666544 222 2345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
+|.+|..+|++++|+.+|++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-07 Score=90.07 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=82.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CC---CCHHH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KP---NFSQS 370 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~ 370 (595)
.......|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .| +....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 34445578999999999999986 3444 567899999999999999999999999976 34 44568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 405 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 405 (595)
++++|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999998 45655544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=85.79 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCC
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEK-----DSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQ 114 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 114 (595)
.+..+.....+..+|+|++|+..++++++. .|+++ ..+..+|.+|..+|+|++|+.++++++.. .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 345666677788999999999999999975 34554 67889999999999999999999999975 344
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH
Q 007634 115 N---ACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPA 152 (595)
Q Consensus 115 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~ 152 (595)
+ ...++++|.+|..+|++++|+..+++++++ .|+++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 4 457899999999999999999999999874 6776655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00017 Score=72.19 Aligned_cols=158 Identities=10% Similarity=0.023 Sum_probs=130.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 341 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~~l~~~-~~~~~~~~~la 341 (595)
-..+.+.|+.++|++.|++..+.. +-+..+|..+-.++...+. .++|.+.|++..... +.+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355677899999999999998764 2356677777777765543 688999999988763 33688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 418 (595)
..+.+.|+.++|.++|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+. .|+ ...+..+-..+.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCH
Confidence 99999999999999999987753 235778889999999999999999999999875 444 77899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 007634 419 SLAIDAYEQCLKI 431 (595)
Q Consensus 419 ~~A~~~~~~al~~ 431 (595)
++|.+.+++..+.
T Consensus 192 d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 192 DKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-06 Score=63.13 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
...+...|.+.+..++....+.+++|+++....+..+ ++..++..+..+ | ..-+.++.||..+.++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666677777777777777776655 777777777665 4 3457788888888888888888888
Q ss_pred HHHHHhcCCCChhhhh
Q 007634 425 YEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 425 ~~~al~~~p~~~~~~~ 440 (595)
++..|++.|++..+..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888888776643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00038 Score=69.68 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHcCC-CcHHHHHH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDP-QNACAHTH 121 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~ 121 (595)
..-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++...+ ..++|.+.|++..+..- -+..++..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34466677888888888888887652 224445555544444333 35667777777665432 24556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLG 198 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la 198 (595)
+...|.+.|++++|..+|++..+.. |+ .. .|..+-..+...|+.++|.+.|+++.+..-. +...|..+.
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~-------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPR-LR-------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cc-------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 7777777777777777777766542 32 12 2445555566667777777777766654221 455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007634 199 VVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (595)
..+.+.|+.++|.+++++..+.
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHh
Confidence 6777777777777777766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-05 Score=59.23 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=82.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 134 (595)
.......+...|.+.+..++.+.++.+.+|+++.+..+... ++..++..++.+ | ..-+.++.+|..+++.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456677778888888888899999999999999887766 999999999887 5 567899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHH
Q 007634 135 AAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 135 A~~~~~~~l~~~~~~~~~~~ 154 (595)
|..+++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999988744
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00018 Score=56.42 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=80.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 007634 111 LDPQNACAHTHCGILYKDEGRL------VEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (595)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~ 183 (595)
..|++++.|..........|+. ++-++.|++++..-|.. ...+..++.+|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4678888888888777777887 77788888888766542 23344455566666544 3447777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007634 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 184 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 226 (595)
+......+.+|...|..-.++|+...|.+.+.+++...|...+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 7776666777777777777777777777777777777776444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00023 Score=55.86 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
.|++++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 44445555554443321 2244444433 34466666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
......+.+|...|..-.++|+...|.+.+.+++.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 665555666666666666666666666666666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00017 Score=58.02 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
++.-...+...|.|+.|+.....++... |+. .+++..+|.+++..++|..|...|+++++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444445555666666666655554432 221 235566666666666666666666666544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00024 Score=57.25 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------C-
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P- 113 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 113 (595)
.++.....++..|.|+.|+-+...++....++ .+++..+|.+++..++|..|...|+++++.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47888999999999999999999877653222 2488999999999999999999999987641 1
Q ss_pred ------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 114 ------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 114 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
.+.+..+.++.|+...+++.+|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998865
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=51.57 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 365 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.-...+.+++|+++....+. .+++..++..+...|. .-+.++.||..+.++|+|.+|+.+.+..|+..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678899999999888754 4788999999988884 5689999999999999999999999999999999987653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00065 Score=52.32 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 367 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|+.+.+.++++.|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 467888888888877654 4688888888888874 4688888999999999999999999999999998887653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0062 Score=47.60 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 79 SGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
.-++++.+.+|+++....+. .+++.+++..++..|. .-+.++.+|..+++.|+|++|..+.+.+++..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45778999999999988765 4799999999998884 5678999999999999999999999999999999987643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0021 Score=49.47 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
++.+.+.+|+++.+..+. .+++..++..++.+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567778888888777654 4678888888877774 466788888888888888888888888888888887765544
Q ss_pred H
Q 007634 157 A 157 (595)
Q Consensus 157 a 157 (595)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.17 Score=52.56 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
++...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555566666666666666666666666666666666666666665554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.23 Score=50.54 Aligned_cols=144 Identities=8% Similarity=-0.084 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH--
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-- 125 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-- 125 (595)
.+..+..|...++.|++..+..+...+ ..+|- ..+..........++. .-..+...++.+|+.+..-......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 456788888999999998777765542 33443 2333332222222211 1224555567788887654443332
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 126 -YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 126 -~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+.+.+++..-+.++.. .|.+... -..........|+..+|.....++.......+.....+-..+...
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~-------~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHH-------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC
Confidence 3345666655554443 2555544 223334455667777777777666655555555555555555544
Q ss_pred CCH
Q 007634 205 MQY 207 (595)
Q Consensus 205 g~~ 207 (595)
|..
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.3 Score=49.69 Aligned_cols=338 Identities=10% Similarity=-0.104 Sum_probs=170.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICL---QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-+...+...|+.+..-......+ ...+++..-+.++.. .|.+....+.........|+..+|....+++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 44455677888876544444333 345667666554443 47888888888889999999988888888877665
Q ss_pred CCCHHHHHHHHHHHH-----------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 007634 147 PSYKPAAECLAIVLT-----------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCY 214 (595)
Q Consensus 147 ~~~~~~~~~~a~~~~-----------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 214 (595)
...+.....+...+. .........|+...|......+ .++ .. .++..... ..+........
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~-~~---~~a~~~~al~~~p~~~~~~~ 205 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PAD-YQ---TIASAIISLANNPNTVLTFA 205 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGG-GH---HHHHHHHHHHHCGGGHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHH-HH---HHHHHHHHHHhChHhHHHHH
Confidence 444443222211111 1112233334433333322211 011 00 00000000 00111111100
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 215 EKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 215 ~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
. ...+... .....++.......+.+.|...+........-+.... ......++......+...++...+.+..
T Consensus 206 ~---~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 206 R---TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQI---QELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp H---HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHH---HHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred h---ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHH---HHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 0 0011111 1122233333344466777777766544332222211 1122223333333443445555555544
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------- 364 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------- 364 (595)
....++ .....++...+..|+++.|...+..+-..........+-+|..+...|+.++|..+|+++....
T Consensus 280 ~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~ 358 (618)
T 1qsa_A 280 MRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (618)
T ss_dssp HTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred ccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 433322 2222333334456777777777766554333456667777777777777777777777665421
Q ss_pred --------------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 365 --------------PNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 365 --------------~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
+.. .......+..+...|....|...+...+... +..-...++.+....|.+..++...
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 0122345666777888888887777766542 2444556777778888888777655
Q ss_pred HH
Q 007634 426 EQ 427 (595)
Q Consensus 426 ~~ 427 (595)
.+
T Consensus 437 ~~ 438 (618)
T 1qsa_A 437 IA 438 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.15 Score=54.73 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=52.8
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
......+...|.+++|++..+ ++... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334455566778887776542 22222 2345678999998887543 3567889999999999999
Q ss_pred HHHHHHHHHHH
Q 007634 241 LESAIACYERC 251 (595)
Q Consensus 241 ~~~A~~~~~~a 251 (595)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988875
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.2 Score=47.56 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 268 (595)
..+|.+|+..|+|.+|.+.+.++.+.-.. -.+++..-..+|...+++.++...+.++......-.......+.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998774221 246677788899999999999999999875531100011234555
Q ss_pred HHHhhhhhh-hcCCHHHHHHHHHHHHh
Q 007634 269 LTDLGTKVK-LEGDINQGVAYYKKALY 294 (595)
Q Consensus 269 ~~~l~~~~~-~~~~~~~A~~~~~~~~~ 294 (595)
...-|..+. ..++|.+|...|-+++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 666666777 67888888777777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.1 Score=51.04 Aligned_cols=205 Identities=13% Similarity=-0.050 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
..+..+..+..+ ..|++.+|++.+..+-+. .+....+...+...+...|+++...+.+.-..+.......+-.
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555666665 348899999887655442 2334677888889999999999888877665554443333322
Q ss_pred HHHHHH---H-HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--C-
Q 007634 121 HCGILY---K-DEGRLVEAAESYHKALSA----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H- 189 (595)
Q Consensus 121 ~la~~~---~-~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~- 189 (595)
.+.... . .....+. ......+.. ..+-...-...+.+...++.++...|++.+|...+.......- .
T Consensus 95 ~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp HHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 222211 1 1222111 111122221 1111111122466678899999999999999999988764311 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 190 ---YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 190 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
-.+.+.....++...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256788889999999999999999998742 22333 345677899999999999999999988754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.093 Score=56.36 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3466666666542 2345666777777777777777777777664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.061 Score=51.13 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----HHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNF----SQS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~----~~~ 370 (595)
..+|.+|+..|+|.+|.+.+.+..+.-.. ..+++.....+|...+++.++...+.++.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47888999999999998888888764211 14566777888888899999988888886542 122 334
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHh
Q 007634 371 LNNLGVVYT-VQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 371 ~~~la~~~~-~~g~~~~A~~~~~~al~~ 397 (595)
...-|..+. ..++|.+|..+|-++++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 555677778 788999998888888754
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.2 Score=40.12 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=82.2
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--h---------------CCCCHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--F---------------NPHCAE 335 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~---------------~~~~~~ 335 (595)
+....-.|.+..++-.+.+ -+...+.+..+.|+...++|.+|+..++..+. . +|.+.+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 3334445666655554432 23455566666677777777777777777762 1 222322
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH--H--------HhcCC--HH-----HHH--------H
Q 007634 336 -ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--Y--------TVQGK--MD-----AAA--------E 389 (595)
Q Consensus 336 -~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~--------~~~g~--~~-----~A~--------~ 389 (595)
.+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.- . ...|+ .+ ... .
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~ 194 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPS 194 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHH
Confidence 345566777777777777777777776666443322111000 0 00000 00 000 1
Q ss_pred HHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 390 MIEKAIAANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 390 ~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..++..+.-|.... .....+.-|..+|-.++...+|......+|.
T Consensus 195 ~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 195 LVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 11111122233221 2234566778888888888888888888885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.15 Score=41.86 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+.+..|.+| ++.|+++.|.++.+++ ++...|..+|...+..|+++-|..+|.++- + +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence 455555555 6789999999887765 567889999999999999999988888752 2 23344456
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (595)
...|+.+.-...-+.+..... +.....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~------------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED------------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 667776554444443333221 12222334455777776666644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.18 Score=49.29 Aligned_cols=191 Identities=12% Similarity=-0.013 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCC
Q 007634 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY----KNRGD 240 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~~~ 240 (595)
|++++|++.+....+. .+....+...+..++...|+++...+.+.-..+.......+...+.... .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677887776444332 2335778888899999999999988877665554444333322222211 11222
Q ss_pred HHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 007634 241 LESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAY 310 (595)
Q Consensus 241 ~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~ 310 (595)
.+... ....+.. ..+-...-...+.+...++.++...|++.+|...+.......-. -.+.+.....++
T Consensus 110 ~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22111 1122221 11111111124666778888999999999999999887643211 145778888999
Q ss_pred HhcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 311 GEMLKFDMAIVFYELAFHF---NPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~---~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
...+++.+|...++++... .+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999987431 2333 346677889999999999999999888764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.23 Score=39.79 Aligned_cols=190 Identities=18% Similarity=0.153 Sum_probs=124.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (595)
....++-.+|+.++-+-.-. .|..++....++..++-.|++..++-.+.+ -+...+.+..+.||...+++..
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHH
Confidence 34456677888876543332 455557788889999999999998877653 3567788888999999999999
Q ss_pred HHHHHHHHHh--c--C-------------CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 135 AAESYHKALS--A--D-------------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 135 A~~~~~~~l~--~--~-------------~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
|+..+++.++ . + |.+.+. .+..+|.++...|+.++|+.++.......|-.+.+-..+
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF------FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 9999999983 2 2 223222 356788899999999999999999888876543332111
Q ss_pred HH-----------HHH------HcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 198 GV-----------VYS------ELMQYDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 198 a~-----------~~~------~~g~~~~A~--------~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
-. +.. +...+.... ...++-...-|.... .....+.-++..|-.++...+|...
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 00 000 000011111 122222233454332 3445678899999999999999999
Q ss_pred HhcCCCc
Q 007634 252 LAVSPNF 258 (595)
Q Consensus 252 l~~~~~~ 258 (595)
-+.+|..
T Consensus 235 R~kDP~F 241 (242)
T 3kae_A 235 RRKDPMF 241 (242)
T ss_dssp HHHSTTT
T ss_pred HhcCCCc
Confidence 9888863
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.41 E-value=1.3 Score=47.07 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=98.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcH-HHHhhHHHHHHH
Q 007634 201 YSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFE-IAKNNMAIALTD 271 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~-~~~~~~~~~~~~ 271 (595)
....|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++.++...+.... ... ......+ +...
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g-AaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG-ASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH-HHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH-HHHH
Confidence 345677778888887766522 122 345666676666555 468888887775432 110 1112222 3446
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
+|.++.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6766665555 45666666666533221 13455677777778877666666665554332222222334444445566
Q ss_pred HHHHHHHHHHHHccCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+.+....+...... ++. +...+|..|...|+...-...+..+
T Consensus 540 ~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 540 QELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp GGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 665555554443321 222 2233455555666644333344433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.049 Score=56.45 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=86.0
Q ss_pred hCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHH
Q 007634 95 QNM-GRLAFDSFSEAVKLDPQNACAHTHCGILYK--DE-GRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTD 162 (595)
Q Consensus 95 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~ 162 (595)
.++ ++.|+..+++..+.+|.....+ ..+.+.. .. .+--+|+..+.+.++. .+.+...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~---------- 329 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS---------- 329 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH----------
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc----------
Confidence 344 5789999999998888654322 2222222 11 2334566666665531 1221111
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
... .|.....+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+
T Consensus 330 --------------~~~-------~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e 388 (754)
T 4gns_B 330 --------------ARL-------MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE 388 (754)
T ss_dssp --------------HHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred --------------ccc-------cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH
Confidence 000 01113455667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007634 243 SAIACYERC 251 (595)
Q Consensus 243 ~A~~~~~~a 251 (595)
.|+-.++.+
T Consensus 389 ~ALLtLNSc 397 (754)
T 4gns_B 389 KALFAINSM 397 (754)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999988876
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.078 Score=46.65 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
...+++.|+.++|++.+...++.+|.++.....+...++-.|+++.|.+.++.+.+++|+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34578899999999999999999999999999999999999999999999999999988753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.27 Score=40.37 Aligned_cols=108 Identities=8% Similarity=-0.047 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------F 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------H
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------H
Confidence 445555554 4678999998887765 5678899999999999999999999887632 2
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
..+..+|...|+.+.-...-+.+..... +.....+++.+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333344455666554444333332221 12223456677777777777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.18 Score=44.41 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=52.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+++.|+.++|+......++.+|.+......+..+++-.|+++.|...++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567788899999999999999999999989999999999999999999999998887544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.2 Score=48.12 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (595)
+.+...|......|+.+.|...+++++...... ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345556666677899999999999999864221 0133346677788899999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
.++..+|-+-.++..+..++...|+..+|+..|+++-.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988999999999999999999998887644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.22 Score=47.72 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.|......|+.+.|...+.+++.+.....-.- .. ...+-.+ ...+++. ...+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence 34444456777788888888877643221000 00 0111111 1111111 123455677888899999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.049 Score=53.20 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHc-----
Q 007634 309 AYGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALS----- 362 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~----- 362 (595)
.+...+++++|..+-...+. +++-.+.+|+..+.++...|+..... ..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34455666666665554431 13334667777777777777655422 12222222
Q ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 363 IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 363 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.++. ....+..+-..|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 1222 24567778888999999999999999884 4422 356778899999999999999999999998887
Q ss_pred Chhh
Q 007634 435 SRNA 438 (595)
Q Consensus 435 ~~~~ 438 (595)
+..+
T Consensus 303 ~~~a 306 (523)
T 4b4t_S 303 NSKS 306 (523)
T ss_dssp SSSC
T ss_pred chhh
Confidence 6544
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.16 Score=50.14 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999877788899998887754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.049 Score=53.17 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=52.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHc--
Q 007634 55 ANILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVKL-- 111 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-- 111 (595)
-..++..++|++|.++-..++. .++-.+..|+..+.++...|+..... ..+..+++.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3456778888888887766541 13445567777777777777665432 223233322
Q ss_pred ---CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 112 ---DPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 112 ---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
++. ....+..+-..|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..++...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 222 23456667778888888888888888774 454322233345556677777777777777777777777665
Q ss_pred CC
Q 007634 188 PH 189 (595)
Q Consensus 188 ~~ 189 (595)
|.
T Consensus 301 p~ 302 (523)
T 4b4t_S 301 PH 302 (523)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.22 Score=49.03 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 340 (595)
.......++..+|++..-...+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++
T Consensus 147 ~~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 44455678889999999999999999999999999999999999999999999999999999999998877789999998
Q ss_pred HHHHHH
Q 007634 341 GVIYKD 346 (595)
Q Consensus 341 a~~~~~ 346 (595)
...+.+
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.29 Score=47.69 Aligned_cols=102 Identities=12% Similarity=-0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
.++..+|..+...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++........+ +.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 3556666666666666666666666555422 12345555556666666666666666665433211110 1112222
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
....|..+...++|..|...|..++.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 33334444444555555554444433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.32 Score=47.39 Aligned_cols=105 Identities=13% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
...++..+|..|...|++++|.+.|.++..... .-.+.+.....++...+++..+..++.++.......+. +....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHH
Confidence 455788899999999999999999999877533 34678888888999999999999999988654322110 11223
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
......|..+...++|.+|...|-.++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33334455555566676666666655543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.39 E-value=4.8 Score=44.82 Aligned_cols=146 Identities=12% Similarity=-0.032 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
....+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..-.......
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------
T ss_pred hHHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------
Confidence 34455666777888876654 3456677888889999999999999999999998743211110000
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHc
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYKNR 238 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~ 238 (595)
..... ..............+..|..+..++.+.+.++.+++..+.+++..+. +. ..|..+-..+...
T Consensus 880 -------~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 -------AVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp -------SSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00000001111223445566666777777777777777777766432 22 2455666667777
Q ss_pred CCHHHHHHHHHHH
Q 007634 239 GDLESAIACYERC 251 (595)
Q Consensus 239 ~~~~~A~~~~~~a 251 (595)
|+|++|...+...
T Consensus 952 ~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 952 GKFDAAHVALMVL 964 (1139)
T ss_dssp CCSGGGGHHHHHH
T ss_pred CCHHHHHHHHHhC
Confidence 8888877766544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.33 E-value=1.1 Score=47.77 Aligned_cols=99 Identities=6% Similarity=-0.102 Sum_probs=77.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNL 340 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l 340 (595)
-..|..+-..+.+.|+.++|...+.+..+. ..-+..+|..+...+.+.|+.++|.++|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 446777778888899999999998765432 33467888889999999999999999999888753 3457788888
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHccC
Q 007634 341 GVIYKDRDNL-DKAVECYQMALSIK 364 (595)
Q Consensus 341 a~~~~~~~~~-~~A~~~~~~al~~~ 364 (595)
-.++.+.|+. ++|.+++++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888874 78888888887764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.27 E-value=1.1 Score=47.70 Aligned_cols=98 Identities=7% Similarity=-0.077 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNL 374 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 374 (595)
...+..+-..+.+.|+.++|..++....+. ..-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346788888899999999999988765432 34457888888888999999999999998887653 2346677777
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHh
Q 007634 375 GVVYTVQGKM-DAAAEMIEKAIAA 397 (595)
Q Consensus 375 a~~~~~~g~~-~~A~~~~~~al~~ 397 (595)
-.++.+.|+. ++|.+.+++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 7788888874 6788888888775
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.12 E-value=3.1 Score=46.30 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------------
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------------------- 112 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 112 (595)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++..--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44556677777766654 344567788888999999999999999999998874211
Q ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 113 ---PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 113 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
...+..|..+..++.+.+.++.+++..+.+++..+.+.+.. ...+|..+-..+...|+|++|...+...-. ...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~--~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL--SIAITHETLKTACAAGKFDAAHVALMVLST-TPL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH--HHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHH
Confidence 01124456666777778888888888888877654332211 122455566666777888877766644321 122
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 007634 190 YAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~ 207 (595)
....+..+.....+.|+.
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 344444454444544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.79 E-value=12 Score=39.95 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=101.6
Q ss_pred HHHhCCHHHHHHHHHHHHHcC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHh
Q 007634 92 LQMQNMGRLAFDSFSEAVKLD-PQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP---SYKPAAECLAIVLTDL 163 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~a~~~~~l 163 (595)
....|+.++++..+.+.+... .++ .-+++.+|.++...+ .++...+...+.... ..........-+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445678888888887766522 222 235666676665555 467887777775432 1111111111234466
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
|.++.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 666665554 46667777776643321 134456777777777776666666655543333222233344444566776
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
+.+....+..... . ++...+. .-..+|..|...|+......++..+..
T Consensus 541 e~~~~li~~L~~~-~-dp~vRyg---aa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 541 ELADDLITKMLAS-D-ESLLRYG---GAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGGHHHHHHHHHC-S-CHHHHHH---HHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C-CHHHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 6666665554432 2 2222221 122334444556665444445555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.52 E-value=5e-06 Score=78.85 Aligned_cols=266 Identities=15% Similarity=0.109 Sum_probs=188.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..++.|..+|...+..++..+|++.|-++ .+|. .+.....+..+.|++++=+.++..+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45667888999999999999999887654 3444 4445555666788999888888776544 4455566677788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
|.+.++..+-.+++. .|+..+ ....|.-++..|.|+.|.-+|... .-|..|+.++..+|
T Consensus 126 yAk~~rL~elEefl~-----~~N~A~--------iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~ 184 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNAH--------IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 184 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSSC--------THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCS
T ss_pred HHhhCcHHHHHHHHc-----CCCccc--------HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHH
Confidence 888888654333221 344333 455677788888888887666432 22456788889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+|..|.+..+++ +++.+|-.....+...+++.-|.-+--..+-.... +-.+-..|...|.+++-
T Consensus 185 ~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----------L~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 185 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----------LEELINYYQDRGYFEEL 248 (624)
T ss_dssp GGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----------CSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----------HHHHHHHHHhCCCHHHH
Confidence 999998877664 56778888888999999998887776665533322 23456677888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH------CAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~------~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
+.+++.++.+...+......||.+|.+- ++++-.++++..... -|. ....|..+..+|..-.+++.|..
T Consensus 249 IsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 249 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9999999998888999999999888764 455555555432221 122 24567788888888888887763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.62 E-value=26 Score=31.90 Aligned_cols=84 Identities=12% Similarity=-0.073 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH-
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV- 376 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~- 376 (595)
.+++.+..+|..+...|++.+|..+|-..- .++++.+..+-.-+... .-.-.|.....+...+.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~------------~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQ------------VDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHH------------TTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHh------------cCCCCcchHHHHHHHHHH
Confidence 478889999999999999988888774221 11222222222211111 00012222333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~ 396 (595)
.|...|+...|...+....+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 36678888888888776653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.57 E-value=29 Score=31.63 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (595)
..+..+.+-+.....|+|=+|.+.++-+.. -|.+++++++|++.+...
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~--------------Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIAN--------------RYVRSKSYEHAIELISQG 59 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH--------------HHHHhcCHHHHHHHHHHH
Confidence 466677777888889999999988876644 355667777777765544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.60 E-value=35 Score=31.34 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (595)
...+..+.+-+.....|+| =+|-+.++-+.. -|.+.++|++|++++...
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~--------------Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAA--------------RYSKQGNWAAAVDILASV 61 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHH--------------HHHhhcCHHHHHHHHHHH
Confidence 4566677777788888888 777777765533 256677777777765543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 595 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-50 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-34 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-33 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-39 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-36 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-34 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-29 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-27 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 4e-24 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 4e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 4e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-25 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-16 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-24 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-22 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-17 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-15 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-24 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-22 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-11 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-18 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-17 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-13 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-12 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-17 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-14 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 7e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 9e-16 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-07 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-07 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-13 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-10 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-14 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-13 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-09 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-09 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-12 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 8e-12 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 8e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 7e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-09 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 9e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 0.001 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.003 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-08 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-06 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 5e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 0.002 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-06 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 3e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 0.001 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 9e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-05 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.001 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 177 bits (448), Expect = 1e-50
Identities = 98/392 (25%), Positives = 166/392 (42%), Gaps = 34/392 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A+ F A + ++ N + + + A+K
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+P A A+++ G +YK+ G+L EA E Y AL P + LA L G
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 172 NTQDG---------------------------IQKYYEALKIDPHYAPAYYNLGVVYSEL 204
Y +A++ P++A A+ NLG V++
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
+ A+ +EKA P + +AY N+G + K + A+A Y R L++SPN + N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
+A + G I+ + Y++A+ H+ DA NL A E A Y
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384
A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QGK+
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416
A ++AI +PT+A+AY+N+G ++
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 132 bits (333), Expect = 2e-34
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 9/322 (2%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L AG+ + + + + +P L ++ + + D + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
+ P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA-------ALVAA 114
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
GD+ V Y AL YN +LG + + + A Y A P+ A A +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
LG ++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459
+A + NL +Y + G I LAID Y + +++ P +A N LA +G + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAED 292
Query: 460 AHRDWGKRFMRLYSQYTSWDNT 481
+ + + N
Sbjct: 293 CYNTALRLCPTHADSLNNLANI 314
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (322), Expect = 5e-33
Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)
Query: 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
L+ A + +A++ P A A ++ G ++ +G + A + KA++ DP++
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209
A +LG LK A + Y AL + P++A + NL VY E D
Sbjct: 203 LDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ Y +A +P + +AYCN+ K +G + A CY L + P + NN+A
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ G +I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 316 REQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 330 NPHCAEACNNLGVIYKDRDN 349
+P A+A +N+G K+ +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 7e-27
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
++ N+L+ F A+A Y L + H Q + LA D++ A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P A+ + K++G + EA + Y+ AL P++ + LA + + G
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------- 319
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 232 GVIYKNRGD 240
G K D
Sbjct: 380 GNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 1e-10
Identities = 19/196 (9%), Positives = 42/196 (21%)
Query: 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
L G +AA + P L ++ + + +K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 433 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 492
P A N + + H K + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 493 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 552
+ Y + + L ++ A +T G + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 553 IDEKKVAAMVREDKID 568
+ + +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (371), Expect = 8e-39
Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 11/237 (4%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
Q +A + + V++ Y+K + YA ++
Sbjct: 6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+ ++ I + N ++ + G Q + +
Sbjct: 63 HA--FKNQITTLQGQAKNRANPNRSEVQANL----SLFLEAASGFYTQLLQELCTVFNVD 116
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356
LG+ + + + + C +LG I + R+ +A
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESY 174
Query: 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
Y+ A + P+ Q N L ++ + +G ++IA + A NL
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (350), Expect = 6e-36
Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-- 267
+ +A + + ++ ++ +R L+ Y++ L + + K
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 268 --ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A + T ++ + + + A + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF----------YTQLLQELCT 111
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
F+ + C + LG+I + + V+ + L +LG + + +
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A A P+ + YN L +L G I Y + + + A N A
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 446 MNYINEGHDD-KLFEAHRDWGKRFMRLYSQY 475
++ E D+ K D+ K F++ +
Sbjct: 230 LSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (340), Expect = 1e-34
Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 31/324 (9%)
Query: 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
+++A+ +A + A V T L Y + L D YA
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQ---ALQ-------DLYQKMLVTDLEYAL 52
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAA--LERPMYAEAYCNM-GVIYKNRGDLESAIACYE 249
+++ + + + A P +E N+ + G +
Sbjct: 53 DKKVEQDLWNHA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC 110
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309
V + + + I + V + Y + +LG
Sbjct: 111 TVFNVDLPCRVKSSQLGIISNKQT-------HTSAIVKPQSSSCSYI--CQHCLVHLGDI 161
Query: 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369
+ A +Y A P + N L ++ + + + Y ++++K F
Sbjct: 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL-GVLYR--DAGSISLAIDAYE 426
+ NL + + + + +A+ G +Y +S + E
Sbjct: 222 ASTNLQKALSKALESRDEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277
Query: 427 QCLKIDPDSRNAGQNRLLAMNYIN 450
+ K + +L+ + IN
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTVIN 301
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (299), Expect = 3e-29
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + SR D Y+ +L D Q++ AF + ++ +
Sbjct: 27 AEVWTSRQALQDL---YQKMLVTDLEYALDK------KVEQDLWNHAFKNQITTLQGQAK 77
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N + L A+ Y + L + + + LG +T
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++ + + +LG + Q A Y AA P + Y + ++
Sbjct: 138 AIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
++GD + I Y R +AV F A N+ AL
Sbjct: 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 109 bits (273), Expect = 7e-27
Identities = 29/321 (9%), Positives = 72/321 (22%), Gaps = 29/321 (9%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+A + Y+ A + + + + ++ + L +P +A
Sbjct: 13 QAEAKRLEREQKLKLYQSATQ-------AVFQKRQAGELDESVLELTSQILGANPDFATL 65
Query: 194 YYNLGVVYSEL----------MQYDTALGCYEKAALERPMYAEAYCNMG--VIYKNRGDL 241
+ V L LG E P + + + +
Sbjct: 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ R L + + + +A+ + N+
Sbjct: 126 ARELELCARFLEADERNFHCWDYRR------FVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
+ + ++ + L + E N D D++ Y L
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWL 235
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+ TV + + +++ N L
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 295
Query: 422 IDAYEQCLKIDPDSRNAGQNR 442
+ + +DP +
Sbjct: 296 LQYFSTLKAVDPMRAAYLDDL 316
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (252), Expect = 4e-24
Identities = 29/291 (9%), Positives = 72/291 (24%), Gaps = 17/291 (5%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYY 181
+ E + L A+P + C VL L + + A + +
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYD--TALGCYEKAA-LERPMYAEAYCNMGVIYKNR 238
L+++P +++ + S L + + L + + + V +
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+A + + + + + + + L L +
Sbjct: 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-------HPQPDSGPQGRLPENVLLK 210
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+ + N D + FY C + ++ + Q
Sbjct: 211 ELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409
++ L + A +P A ++L
Sbjct: 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 7/101 (6%), Positives = 17/101 (16%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
L + + Y L + + + + E
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+ E + + + DP
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 11/147 (7%), Positives = 37/147 (25%), Gaps = 11/147 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +L + D+ + +E + + + + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAE 240
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+E+ + + + + + L +L +
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEK 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ +Q + +DP A +L +
Sbjct: 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 7e-25
Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 13/242 (5%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
+ + Y + + E A + ++ + + L L
Sbjct: 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------K 92
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
D+++ + Y + ++ V + + F + + A +
Sbjct: 93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 152
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE------KA 394
+ ++ D ++ L + N V + + A + +
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212
Query: 395 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 454
I P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 213 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271
Query: 455 DK 456
Sbjct: 272 QC 273
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.7 bits (190), Expect = 3e-16
Identities = 27/275 (9%), Positives = 73/275 (26%), Gaps = 12/275 (4%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 95 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
+ + + + ++ + ++ L N +++ + + V
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQ 207
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 345
Y + + H A L + P L IY+
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266
Query: 346 D--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
D + D + AL + ++ + + Y
Sbjct: 267 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 1e-10
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ + LQ AF +A++L+ N +L K + + +Y A
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
+ + ++ + ++ + L D A+ + V
Sbjct: 104 IIEEQPKNYQVWH------HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 157
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
E +D L ++ E + + N ++
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 217
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAI 320
+N + G + L + + L Y +ML+ D
Sbjct: 218 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277
Query: 321 VFYELAF 327
A
Sbjct: 278 DILNKAL 284
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (140), Expect = 7e-10
Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 17/254 (6%)
Query: 49 KDALSY-ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
+D Y +L+ + A L +E ++ N + + L+ E
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------KDLHE 96
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ ++ LVE + L +
Sbjct: 97 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEKAALER 221
+ + +Q + LK D + V S + + +
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P A+ + I ++RG L + L + P+ + + LE
Sbjct: 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV---DIYEDMLENQ 272
Query: 282 INQGVAYYKKALYY 295
+ KAL
Sbjct: 273 CDNKEDILNKALEL 286
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 4/66 (6%), Positives = 22/66 (33%)
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452
I + + + Y+ + + A ++++ + R + + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 453 HDDKLF 458
+++
Sbjct: 94 LHEEMN 99
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 3e-24
Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 10/266 (3%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+ G G+ + + + A++ DP + A+ LG +E Q A+ + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--------LG 273
P A + V + N A L +P + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 274 TKVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
+ + + + A+ D LGV + ++D A+ + A P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
+ N LG + + ++AV Y+ AL ++P + +S NLG+ G A E
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGS 417
+A+ G + + S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWS 289
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 1e-22
Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 11/297 (3%)
Query: 177 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
K Y+ + +P P + G+ + A+ +E A + P + EA+ +G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--------LEGDINQGVA 287
AI+ RCL + P+ + A +A++ T+ + + L
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345
+ + F + + + LGV++
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183
Query: 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405
DKAV+C+ ALS++PN N LG + + A +A+ P Y +
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243
Query: 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
NLG+ + G+ A++ + + L + SR I L +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 3e-17
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 42/338 (12%)
Query: 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130
Y+ E + +G+ + A F AV+ DP++ A + G +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A + + L P + A LA+ T+ + + + L+ P Y
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQACEILRDWLRYTPAY 120
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A + +G + + +
Sbjct: 121 AHLVTPAEEGAGGAGLGP------------------SKRILGSLLSD-SLFLEVKELFLA 161
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
+ + P LG L G+ ++ V + AL + LG
Sbjct: 162 AVRLDPTSIDPDVQC-----GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216
Query: 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
+ + A+ Y A P + NLG+ + +AVE + AL+++
Sbjct: 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276
Query: 371 -----------LNNLGVVYTVQGKMDAAAEMIEKAIAA 397
+ L + ++ G+ DA + ++
Sbjct: 277 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------ 162
++L P N A + + +E +A E L P+Y
Sbjct: 80 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139
Query: 163 --LGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
+ SL + + + A+++ LGV+++ +YD A+ C+ A
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 253
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
G + V ++ +AL G + +
Sbjct: 254 -GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW-----------------------S 289
Query: 339 NLGVIYKDRDNLDKAVECYQMALSI 363
L + D LS
Sbjct: 290 TLRLALSMLGQSDAYGAADARDLST 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 3e-09
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 4/149 (2%)
Query: 322 FYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
Y+ + F G+ +L AV ++ A+ P ++ LG
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
+ A + + + P A L V + + A + L+ P +
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 438 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 466
G ++ +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 99.1 bits (245), Expect = 7e-24
Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 13/254 (5%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
RP E + +G+ G+ ++A ++ L + P + A N IAL
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 118
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEA 336
G + + L +A ++ + V + +
Sbjct: 119 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
++ +++ S+ + S++ LG Y G +D+A + + A+A
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 397 ANPTYAEAYNNLGV 410
N + +
Sbjct: 238 NNVHNFVEHRYALL 251
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 94.9 bits (234), Expect = 2e-22
Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 13/261 (4%)
Query: 197 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
L V +Q + L E+ AL A+ GV+Y + G A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A+ P+ N + G + G+ + + L + Y A N G+A
Sbjct: 65 AIRPDMPEVFNYL-------GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSIKPNFSQS 370
+ +A + +P+ L + + D + +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
+ + Q M+ + +E LG Y G + A ++ +
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 431 IDPDSRNAGQNRLLAMNYINE 451
+ + + LL ++ + +
Sbjct: 238 NNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.6 bits (145), Expect = 7e-11
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 20/265 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A L+ + LA E +L D + +G+ + LA + FS+A+
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ P + GI G A E++ L DP+Y A I L
Sbjct: 66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------- 118
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA--LGCYEKAALERPMYAEAY 228
G + + DP+ L + +L + L + + + +
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 178
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288
+ +E A +++ + + L GD++ A
Sbjct: 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-------GDLDSATAL 231
Query: 289 YKKALYYNWHYADAMYNLGVAYGEM 313
+K A+ N H + +
Sbjct: 232 FKLAVANNVHNFVEHRYALLELSLL 256
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 58.7 bits (140), Expect = 3e-10
Identities = 31/192 (16%), Positives = 58/192 (30%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
L ++ E + + + A +Y GV Y + +A + A P
Sbjct: 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391
E N LG+ N D A E + L + P ++ + N G+ G+ A + +
Sbjct: 69 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128
Query: 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 451
+P L + + + K D + N +
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188
Query: 452 GHDDKLFEAHRD 463
++L D
Sbjct: 189 TLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 306 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361
L V L+ ++ + E + A+ GV+Y A + AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421
+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G LA
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 422 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 478
D + DP+ LA ++E ++ + H + + ++ +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 14/111 (12%), Positives = 32/111 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A + + L + +K+ + Q + ++ L
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ + + G Y G L A + A++ + + L+ LG
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 16/153 (10%), Positives = 32/153 (20%), Gaps = 9/153 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
L + A + D + + + Q + + K D +
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172
Query: 116 ACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ L + S L LG +
Sbjct: 173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-------DL 225
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
+ A+ + H + + S L Q
Sbjct: 226 DSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 85.7 bits (210), Expect = 1e-18
Identities = 34/301 (11%), Positives = 76/301 (25%), Gaps = 34/301 (11%)
Query: 170 AGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
GN + + AL+ P A LG V + +L ++
Sbjct: 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK-NNMAIALTDLGTKVK 277
+ I +G L++A E+ + + + + +
Sbjct: 85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144
Query: 278 LEGDINQGVAYYKKALYY-----NWHYADAMYNLGVAYGEMLKFD-------MAIVFYEL 325
+++ A + + + L D
Sbjct: 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL----NNLGVVYTVQ 381
+ + + A + ++ + A + + + L N+ +
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 382 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
G+ + A ++E+ L LY AG S A LK+ +
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324
Query: 436 R 436
Sbjct: 325 G 325
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (198), Expect = 4e-17
Identities = 37/317 (11%), Positives = 78/317 (24%), Gaps = 29/317 (9%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-----ACAHTHCGILYKDE 129
+ +D+ + E + + A A++ P A + G + +
Sbjct: 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + + + L L G Q + +A ++
Sbjct: 65 GELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 190 Y--------APAYYNLGVVYSELMQYDTALGCYEKAALERP-----MYAEAYCNMGVIYK 236
+ + D A + +
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 293
RGDL++A + R + N + + ++ A ++ GD + +
Sbjct: 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243
Query: 294 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKD 346
N N+ A + +F+ A + E L +Y
Sbjct: 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303
Query: 347 RDNLDKAVECYQMALSI 363
A AL +
Sbjct: 304 AGRKSDAQRVLLDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 69.9 bits (169), Expect = 2e-13
Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 34/314 (10%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----ALERPMYAEAYCNMGVIYK 236
+ ++ D +A V D A + A A +G +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+G+L ++A ++ ++ + +L + +G + +KA
Sbjct: 63 CKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 297 WHY--------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEA 336
+ + D A +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396
G + R L++ S + + + + G AAA +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 397 A----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNY 448
N + N+ G A E+ + R LL Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 449 INEGHDDKLFEAHR 462
G
Sbjct: 302 WQAGRKSDAQRVLL 315
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 60
Query: 276 VKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
+ +G++ + +A ++ + ++ A E AF
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 330 NPHC--------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------ 369
+ LD+A + + + ++
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
G + + +++ ++ + + A + ++ G + A +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 430 KIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
K + + GQ R +A I G + + + L
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 414
+ ++ V G D A + + A+ P A + LG +
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 415 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 474
G ++ ++ +Q ++ + + + ++ +L ++
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 475 YTSWDNTKDPERPLVIGYV 493
+ +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 6e-17
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 40/209 (19%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L + G + + + + + ++ +N+G +Y+ L A + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
+ A AY G++Y + AI + L
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------- 102
Query: 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336
NQ + Y L + + +YN+ Y + ++ A LA
Sbjct: 103 ------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---- 152
Query: 337 CNNLGVIYKDRDNLDKAVECYQMALSIKP 365
+DKA+EC +P
Sbjct: 153 --------PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (165), Expect = 8e-14
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
AI+L + G + D + + ++ +N+G Y + A +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
+ + + H A A G++Y + D A++ + AL +
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------N 103
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+ + E N+ +Y A + + + R++ ++ +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 7e-09
Identities = 26/202 (12%), Positives = 53/202 (26%), Gaps = 40/202 (19%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ + + AL + V + S G + A +F+ ++ D
Sbjct: 12 GVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+ G+LY + A + +AL
Sbjct: 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN------------------------- 103
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I L+ YN+ +Y++ ++ A A +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS------------ 151
Query: 235 YKNRGDLESAIACYERCLAVSP 256
++ A+ C + P
Sbjct: 152 EPRHSKIDKAMECVWKQKLYEP 173
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.8 bits (185), Expect = 9e-16
Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 26/235 (11%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAIALTDLGTKVKL 278
A+ IY+ R +L A + + G V
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF------HFNPH 332
+ + + + + ++ + AI YELA
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMD 385
+ + +A + Y + + + G+
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
Query: 386 AAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQCLKIDP 433
AAA +++ + +P +A++ +L D+ +S ++ +++D
Sbjct: 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 27/224 (12%), Positives = 57/224 (25%), Gaps = 19/224 (8%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKA 142
+++ LA DSF +A + + +K G V A +S A
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196
+ + I Y A + +
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163
Query: 197 LGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + QY A Y K L + + + G+ D +A +
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
+ PNF ++ + + +++ + +
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.6 bits (117), Expect = 5e-07
Identities = 18/173 (10%), Positives = 40/173 (23%), Gaps = 6/173 (3%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 387
A+ C IY+ R L+ A + + A + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447
+ +E AI + + + + Y + + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 448 YINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 500
+A +YS+ + + Y
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.9 bits (175), Expect = 5e-15
Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 16/205 (7%)
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
P+A+ L + G L + + Y A+ +P A Y N + Y ++ Q + A
Sbjct: 2 PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
L +A +A+ +G + AIA +R +++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA- 116
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330
+ ++ + ++ + + + + + + +
Sbjct: 117 -----------LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVE 355
I D ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMD 190
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.5 bits (174), Expect = 7e-15
Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 9/197 (4%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L + G ++ + + A Y +A+ N A N + Y +M + + A+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + +A LG + ++ D+A+ Q A S+ + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALR 118
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
A + +I + E+ + + A ++ ++ + D + +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC- 177
Query: 446 MNYINEGHDDKLFEAHR 462
I HD + +
Sbjct: 178 ---IEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.1 bits (173), Expect = 8e-15
Identities = 22/139 (15%), Positives = 46/139 (33%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A+ G +A CY A++ P + N + Y + + A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
A+ + +A+ LG + S AI ++ + + R + + + I +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 454 DDKLFEAHRDWGKRFMRLY 472
E R + + Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.8 bits (167), Expect = 5e-14
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ AH G + EA + +A S + D+ ++L++A
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN------FGDDIPSALRIA---- 120
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+K + +++ + + + + + + L ++ I
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Query: 235 YKNRGDLESAI 245
+ +
Sbjct: 179 EAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.7 bits (164), Expect = 1e-13
Identities = 26/181 (14%), Positives = 50/181 (27%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A + G K+ A Y A NP A N + Y ++A+ +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419
AL + ++ LG D A +++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 420 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 479
E+ + + + + + A + E H D G + D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 480 N 480
Sbjct: 184 K 184
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 3e-10
Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 12/213 (5%)
Query: 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
S + + +G L + A + A+ +P A +T+ + Y + +A
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
+AL D A L ++ + + I A + + +
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEM-------ESYDEAIANLQRAYSLAKEQRLNFGDDI 113
Query: 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + ER ++ E+ + + + E + +R +
Sbjct: 114 PSALRIAKK-----KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
Query: 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291
+ A + ++ V +K
Sbjct: 169 GHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 70.8 bits (173), Expect = 3e-14
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 315 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ A+ A +P A ++ + + ++A E ++ + P + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 375 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
+ Q + D A + L + + Q ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 434 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 488
+ + + + + + DD+L E G F+ + + K L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.4 bits (164), Expect = 5e-13
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338
EG + Q + +A+ + A + F+ A + P +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 339 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
L + K + + + + V + +E+ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 398 NPTYAEAYNNLG 409
N+
Sbjct: 129 RQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.0 bits (163), Expect = 6e-13
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 93 QMQNM---GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
Q +N G+L A + EA+K P++A + L +G A E +++ P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQ 206
Y P A L + +K A +D Q A + +
Sbjct: 62 EYLPGASQLRHL-------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ + R + D
Sbjct: 115 YEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.5 bits (154), Expect = 9e-12
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 6/141 (4%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G Q ++ EA+K P A + + ++ A ++ P Y
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
+ + K + + +N + D Q
Sbjct: 69 QLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 290 KKALYYNWHYADAMYNLGVAY 310
+ + +
Sbjct: 123 LQIEELRQEKGFLANDTSFSD 143
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.4 bits (151), Expect = 2e-11
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ K+ALS + AL L ++ + L + A +
Sbjct: 2 QWKNALS-------EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM 54
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+++KL P+ + L K + A+ A + + +
Sbjct: 55 QSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNL 108
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
++ + + + + ++ + +S++ D LG +E A
Sbjct: 109 SMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRLG----GYIELFSTAG 162
Query: 227 AY 228
Y
Sbjct: 163 NY 164
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.4 bits (151), Expect = 2e-11
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 441 NRLLAMNYINEGHDDKLFEAHRDW 464
L +
Sbjct: 69 Q--LRHLVKAAQARKDFAQGAATA 90
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.2 bits (148), Expect = 5e-11
Identities = 17/182 (9%), Positives = 40/182 (21%), Gaps = 9/182 (4%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+ G L+ A+ + SP +++ L GD + +++
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-------GDFERADEQLMQSIKLF 60
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
Y L + + ++ E
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415
++ N+ D IE A + ++ L +
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIELFSTAGNYFLVPIASINTLEIKS 179
Query: 416 GS 417
+
Sbjct: 180 AT 181
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 6e-13
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
A +G + D ++A+ Y++ + P N A + G K +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGV 342
+ ++ A A +G +Y + K+ AI FY LA H P + C
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 343 IYKDR 347
I K++
Sbjct: 124 ILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 1e-10
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 394 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
AI E Y +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 2e-10
Identities = 24/108 (22%), Positives = 37/108 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
+ V +A A +G E + +Y K+L +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 6e-10
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A E Y +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 1e-09
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A LG + FD A+ Y+ A +P N +Y ++ + +K E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 360 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 408
A+ + ++ +G Y + K A K++A + T +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 5e-09
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 326 AFHFNPHCAE-------ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
A E A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 1e-07
Identities = 24/109 (22%), Positives = 37/109 (33%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G + A + Y KA DP+ A V + G K
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ I+ E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQNACAHTHC-------GILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N + G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 20/102 (19%), Positives = 36/102 (35%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
G + A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
+ +A +G S +D I Y ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
LG + D A + +KA +PT N +Y + G + + E+ +
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 430 KIDPDSRNAGQNRLLAMNYI 449
++ ++R + A I
Sbjct: 66 EVGRENREDYRQIAKAYARI 85
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 61.9 bits (149), Expect = 6e-12
Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 26/182 (14%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E E+ A G +Y G A+ Y + ++ + A
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
A NL + Y ++ ++ A+ + A +
Sbjct: 60 ----------------------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ G + + A ++ L + P + + + + +
Sbjct: 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
Query: 394 AI 395
+
Sbjct: 158 NM 159
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 55.3 bits (132), Expect = 1e-09
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 343
A + G Y + K+ A++ Y + A NL +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y KAVEC AL + + L G + + ++A EK + NP
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 404 AYNNLGVLYRDAG 416
A + + + A
Sbjct: 134 ARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 201
A ++ + GT G + +Y + + + A+ NL + Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L +Y A+ C +KA + G + ESA +E+ L V+P + A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 262 KNNMAIALTDLG 273
+ + +
Sbjct: 135 RLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 52.3 bits (124), Expect = 1e-08
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 367
+E+ A G +Y +AV Y +S +
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63
Query: 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+ NL + Y + A E +KA+ + + G A +E+
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 428 CLKIDPDSRNAGQNRLLAMNYINE 451
L+++P ++ A + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAYCNMGVIYKNRGDL 241
A G VY + +Y A+ Y K L + + + N
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301
+ Y + + + L G L + ++K L N
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 302 AMYNLGVAYGEMLKFD 317
A + + + + +
Sbjct: 134 ARLQIFMCQKKAKEHN 149
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 42.2 bits (98), Expect = 3e-05
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGT 165
+ A G +Y G+ V+A Y K +S ++ K + L +L
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
++ +AL +D Y G + ++++A G +EK P
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 226 EAYCNMGVIYKNRGDLESA 244
A + + K +
Sbjct: 133 AARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.8 bits (89), Expect = 5e-04
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 15/125 (12%)
Query: 55 ANILRSRNKFVDALALYEIV---------------LEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+V A+ Y + +S + A + +C
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + +A+ LD N G A + K L +P K A + +
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 160 LTDLG 164
Sbjct: 142 QKKAK 146
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 8e-12
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 392
+ ++L K + +Q + + D + I
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
+ + L V A+ L+ +P + A + L +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 2e-10
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-- 292
+ DL ++ A + + A L DI +G+ ++
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
D ++ L V + +++ A+ + P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 8e-10
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF 327
+ ++ D+ + ++ + D IV E
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 328 --HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
+ L V +KA++ + L +P +Q+ ++ K
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (124), Expect = 7e-09
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
L++ + + +A K A L + + GI E L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 186 I--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ L V L +Y+ AL P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 3e-08
Identities = 11/111 (9%), Positives = 22/111 (19%), Gaps = 5/111 (4%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-----TALGCYEK 216
+ L + +K+ + D L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ + + V + E A+ L P AK +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 8/107 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLA 157
F + + + + + L +
Sbjct: 18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---- 73
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+ L + ++ L+ +P A ++ +
Sbjct: 74 -YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.003
Identities = 9/113 (7%), Positives = 19/113 (16%), Gaps = 8/113 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAK 262
++ + + I E L
Sbjct: 14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----- 68
Query: 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
+ L + + + Y + L A + M K
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 1e-09
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 30/179 (16%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
E+ + G +Y G + A+ Y++ ++ N A
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 339
+ NL + + ++ F AI A + + + +
Sbjct: 58 ----------------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
G + ++ + A +Q L + PN + L V + A EK + AN
Sbjct: 102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----EKKLYAN 156
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 5e-06
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 201
+ ++ + GT G + + +Y + K ++ NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L + A+ KA + G + D E A A +++ L + PN + A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 262 KNNMAIALTDLGTKVKLE 279
K +A+ + ++ E
Sbjct: 133 KTQLAVCQQRIRRQLARE 150
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 378
+ G +Y +A+ Y+ + S NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
AA E KA+ + + + G + LA +++ L++ P+++ A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 439 GQNRLLAMNYINE 451
+ I
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 2e-09
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-------TECYGY 62
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ +A+ + Y Y + + KF A+ YE PH +A
Sbjct: 63 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 345 K--DRDNLDKAVECYQMALSIKPN 366
K + ++A+ + S+ +
Sbjct: 123 KIVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 6e-08
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A L D + +Y +A+ N A N +AY + A+
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385
A + + A+ Y+ + +KP+ + + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-- 127
Query: 386 AAAEMIEKAIAANPTYAEAYNNLGV 410
+ E+AIA + ++L +
Sbjct: 128 ---KAFERAIAGDEHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 9e-08
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
K + A+ Y A+ AI + + + A++
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLES 243
+D Y YY L ++ AL YE +P +A K + E
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
Query: 244 AIACYERCLAVSPNFEIAKNNM 265
AIA E +V + +I +
Sbjct: 133 AIAGDEHKRSVVDSLDIESMTI 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 3e-07
Identities = 21/123 (17%), Positives = 42/123 (34%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
AI + Y + Y G A+ YE +K+ P ++A + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 454 DDK 456
++
Sbjct: 130 FER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 9/136 (6%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A Y + Y+ A+ Y +A P A Y N + Y A+ R
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA- 309
+ + + A + L G + Y+ + H DA
Sbjct: 70 AIELDKKYIKGYYRRAASNMAL-------GKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 310 -YGEMLKFDMAIVFYE 324
+ F+ AI E
Sbjct: 123 KIVKQKAFERAIAGDE 138
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.001
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-------CYEKAA 218
LK N + Y A+K + + Y +A
Sbjct: 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
Y + Y G +A+ YE + V P+ + AK + K
Sbjct: 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK--- 128
Query: 279 EGDINQGVAYYKKALYYNWHYADAMYNLGV 308
+++A+ + H + +L +
Sbjct: 129 ---------AFERAIAGDEHKRSVVDSLDI 149
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 2e-09
Identities = 21/93 (22%), Positives = 34/93 (36%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282
+ AE +G + D E+ L EI+ + L L V +GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315
++ + KK L + + A NL M K
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 3e-09
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 386
AE LG + + + AL + L+ L QG +D
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 387 AAEMIEKAIAANPTYAEAYNNLGVLYR 413
A + +K + +P + A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 4e-08
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 352
A+ + LG + ++ E + L + +LDK
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383
A+ + L + P ++ NL + K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-06
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 243
A + LG V Y E+A + + +GDL+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A+ ++ L + P + A N+ +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-05
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + E +AL + + VL L ++ G+ + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 183 ALKIDPHYAPAYYNLGVVYSEL 204
L++DP + A NL +
Sbjct: 72 LLELDPEHQRANGNLKYFEYIM 93
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.003
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+A+ S++ L V + +++ E L
Sbjct: 3 LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ D AL +K P + A N+
Sbjct: 58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.3 bits (129), Expect = 3e-09
Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 29/180 (16%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
K + + +E N+G + + E AI Y + L
Sbjct: 18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------ 59
Query: 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 335
++ A + N+G +M + A+ A +P +
Sbjct: 60 -------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112
Query: 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395
A ++ D+A+ + A I P L V EKA
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK----EKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 1e-08
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA------------- 183
+ + D ++ L ++G + + N + I+KY +
Sbjct: 7 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 184 ---LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
K+ P N+G ++ + A+ +A P +A ++ +
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A+A ++ ++P + + + +
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.3 bits (116), Expect = 2e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 343
++ + N+G + + ++MAI Y + P N+G
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
+ AV+ AL I P+ +++L + + D A ++KA P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 404 AYNNLGVLYR 413
L + +
Sbjct: 147 IQAELLKVKQ 156
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 53.5 bits (127), Expect = 4e-09
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 25/165 (15%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y+ E+ A G + + ++ AI Y+ L + E + + +
Sbjct: 6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60
Query: 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
NL Y + + AI + +
Sbjct: 61 --------------------KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
+A LGV L++A E A S+ PN N+ +
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 50.8 bits (120), Expect = 4e-08
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 200
A + + G + I KY EAL H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
Y++ Y A+ K +A +GV G LE A + +++PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 261 AKNNMAIALTDLG 273
+N+ + + L
Sbjct: 137 IRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 377
A G + ++ +++A+ Y+ K NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437
Y A + K + + +A LGV G + A + + ++P++ +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 438 AGQNRLLAMNYINE 451
+ L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 44.6 bits (104), Expect = 4e-06
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 343
A + G + + + + AIV Y+ A F H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403
Y + KA++ L I N ++L LGV G ++ A E + KA + NP +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 404 AYNNLGVLYR 413
N+ +
Sbjct: 137 IRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 23/139 (16%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK----------------AALERPMYAEAYCNMGVI 234
A G + + + + A+ Y++ ++ + N+
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
Y D AI + L + N A + +A G + + KA
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-------FLEEAKENLYKAAS 129
Query: 295 YNWHYADAMYNLGVAYGEM 313
N + D + + ++
Sbjct: 130 LNPNNLDIRNSYELCVNKL 148
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 37.7 bits (86), Expect = 0.001
Identities = 21/116 (18%), Positives = 41/116 (35%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ + ++ +K + + ++ C A D S+
Sbjct: 34 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+K+D N A G+ G L EA E+ +KA S +P+ + + L
Sbjct: 94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 4e-09
Identities = 17/113 (15%), Positives = 37/113 (32%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
+ +KP++ + + + + A E+ + + L +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 3e-08
Identities = 19/108 (17%), Positives = 36/108 (33%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
L + G K G+I+ + Y +A+ + H N AY + + A
Sbjct: 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
P + + + + ++A Y+ L + N Q L
Sbjct: 65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 9e-07
Identities = 21/108 (19%), Positives = 38/108 (35%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
G N+D A++CY A+ + P+ +N Y +G A E K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+ P + + Y+ A YE+ LK + ++ +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 28/107 (26%), Positives = 39/107 (36%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+P + + Y + E A YE L N K +
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 4e-06
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 7/121 (5%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
G + G+++ A+ CY + + P+ + +N + +GD +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA-------AYAKKGDYQK 55
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
K + + A + +F+ A YE + + L +
Sbjct: 56 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
Query: 345 K 345
Sbjct: 116 A 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 5e-05
Identities = 19/105 (18%), Positives = 36/105 (34%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N S DAL Y ++ D N + + + + A++ + V L P
Sbjct: 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
++ + R EA +Y + L + + E L +
Sbjct: 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G + D AL CY +A P Y N Y +GD + A +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
+ + P++ + A AL L + Y++ L + + L
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFL-------NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 49.1 bits (115), Expect = 5e-07
Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LG + + A +EKA + N+GV+Y +E +
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61
Query: 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312
A + + + + + + + N+ + YY KA + A G+
Sbjct: 62 AKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 120
Query: 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 372
++ D + + + C LG +Y K ++ + + S
Sbjct: 121 VVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG 180
Query: 373 N----LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414
+ + + + A NLG + +
Sbjct: 181 CFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 37.9 bits (86), Expect = 0.002
Identities = 28/242 (11%), Positives = 51/242 (21%), Gaps = 10/242 (4%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G E +A + + KA D L ++ K K +
Sbjct: 9 GAKSYKEKDFTQAKKYFEKA--CDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ + + AL Y KA + A +
Sbjct: 67 LNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 125
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302
A A N + K +
Sbjct: 126 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185
Query: 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQ 358
+GE + + C NLG + + + N +A+E ++
Sbjct: 186 NMY---HHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFK 242
Query: 359 MA 360
Sbjct: 243 KG 244
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.8 bits (110), Expect = 1e-06
Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 26/157 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A G+ GR +A+ AL + + +D
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-------------------VLDDLRDFQ 53
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
A + A+ + + E E P + + Y
Sbjct: 54 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113
Query: 238 RGDLESAIACYERC-------LAVSPNFEIAKNNMAI 267
A+ Y R L + P + N I
Sbjct: 114 SDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 12/127 (9%), Positives = 18/127 (14%), Gaps = 12/127 (9%)
Query: 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
A G G Q + AL A
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFAT 60
Query: 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387
A + + P L Y + + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 388 AEMIEKA 394
+
Sbjct: 121 LGAYRRV 127
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.9 bits (87), Expect = 0.001
Identities = 20/134 (14%), Positives = 29/134 (21%), Gaps = 12/134 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +F A L + G V + ++ A L
Sbjct: 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVED 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
AHT GR P +P L G +
Sbjct: 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125
Query: 175 DGIQKYYEALKIDP 188
+ L IDP
Sbjct: 126 RVKTTLADDLGIDP 139
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 44.0 bits (102), Expect = 9e-06
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 224 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 269
AY + + G+ + A A R + +S +A AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
L + + ++ + Y+ + N + A+Y+ +A + + A+ ++
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 326 AFHFNPHCAEACNNLGVIYKD 346
+ +
Sbjct: 126 VVEMIEERKGETPGKERMMEV 146
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 42.8 bits (99), Expect = 2e-05
Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)
Query: 334 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 379
A L + D+A + A+ I L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 380 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 428
D A +KA+ E + + G + A+ +++
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126
Query: 429 LKIDPDSRNAGQNRLLAMNYINE 451
+++ + + + M +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (86), Expect = 0.001
Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)
Query: 316 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374
+ + + E L + A + N Q
Sbjct: 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113
Query: 375 GVVYTVQGKMDAAAEMIEKAIA 396
M+E I
Sbjct: 114 --------------SMVEDKIQ 121
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVF 322
N A L K D GV + +Y L + ++ ++ MA +
Sbjct: 40 NYAWGLI----KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95
Query: 323 YELAFHFNPHCAEACNNLGVIYK 345
+ F + + ++
Sbjct: 96 VDTLFEHERNNKQVGALKSMVED 118
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (83), Expect = 0.003
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 342 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400
+ D ++ V+ + L L + G+ A ++
Sbjct: 46 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105
Query: 401 YAEA 404
+
Sbjct: 106 NKQV 109
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 0.002
Identities = 16/225 (7%), Positives = 56/225 (24%), Gaps = 12/225 (5%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
+AA ++ G + + + A YER ++ +
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL------KKNMLLYFAYADY 108
Query: 276 VKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334
+ + + Y + L + ++ A
Sbjct: 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168
Query: 335 EA-CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393
+ Y + A + +++ L + + + + + + + E+
Sbjct: 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228
Query: 394 AIAANPTYAEA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
+ + E + + G ++ + ++ +
Sbjct: 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.7 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.39 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.16 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 98.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.58 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.11 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.33 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.3 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-41 Score=332.63 Aligned_cols=380 Identities=27% Similarity=0.379 Sum_probs=353.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 210 (595)
++++|+..+..+....|..... ....+......+....+...........+.........+......+....+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred cccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 9999999999999999998776 444555566678888888888888888888899999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (595)
...+.+.+...|+.+.++..+|.++...|++++|...++++++.+|++...+..+ |.++...|++++|+..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~ 227 (388)
T d1w3ba_ 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-------GNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHH-------hhhhhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987765554 444555779999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 007634 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370 (595)
Q Consensus 291 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 370 (595)
++....|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 307 (388)
T d1w3ba_ 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++.++..
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~ 381 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-37 Score=301.98 Aligned_cols=359 Identities=26% Similarity=0.379 Sum_probs=338.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+..+.+.+|.........+.
T Consensus 30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1w3ba_ 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
.....+....+...........+..... ....+......+....+...+.+.+...|+.+.++..+|..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (388)
T d1w3ba_ 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccc-------cccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc
Confidence 9999999999999988888887777665 455566677789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
|++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|.....+..++ .++...|++++
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~ 255 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA-------CVYYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH-------HHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999998876655544 44555789999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+.+|+++++++
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 335 (388)
T d1w3ba_ 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
|+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|.++||
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.7e-28 Score=232.43 Aligned_cols=251 Identities=20% Similarity=0.263 Sum_probs=161.4
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
.+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++++|++...+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 319 (595)
++++|+..+++++...|................. ..........+...+.+.+|
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG--------------------------LGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------------CTTHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcc--------------------------cccchhhHHHHHHhhHHHHH
Confidence 9999999999999999876432221111100000 00000011112222334444
Q ss_pred HHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 320 IVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 320 ~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
+..+.+++..+|+. +.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++++
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 45555555444432 3444455555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 555555555555555555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-27 Score=225.18 Aligned_cols=250 Identities=20% Similarity=0.256 Sum_probs=215.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+....+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------LTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYN 196 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~--------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~ 196 (595)
...|++++|+..+++++...|............ .......+...+.+.+|+..|.+++..+|+ ++.++..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999999999998765432211111 112233445567889999999999999887 4678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~------- 250 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC------- 250 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999887665555554
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 277 KLEGDINQGVAYYKKALYYNWHYADAM 303 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 303 (595)
...|++++|+..|+++++++|++....
T Consensus 251 ~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 251 INLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence 456799999999999999988876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.5e-23 Score=192.26 Aligned_cols=205 Identities=14% Similarity=0.064 Sum_probs=189.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
-.+.+-.+|.++.+.+.+++|+.+++++++.+|++..+|..+|.++...| ++++|+..++++++.+|++..+|..+|.+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 35556678889999999999999999999999999999999999999987 59999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+..+|++++|+..+.++++++|++..+ +..+|.++...|++++|++.++++++++|.+..+|.++|.++...+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a-------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887 7788888888999999999999999999999999999999998877
Q ss_pred C------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 206 Q------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 206 ~------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
. +++|+..+.++++.+|++..+|..++.++...+ .+++...++.++++.|...
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence 6 689999999999999999999999999876544 6889999999998888653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-23 Score=196.40 Aligned_cols=237 Identities=12% Similarity=0.116 Sum_probs=156.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNM 265 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (595)
+|+...++..+|.++.+.+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..++..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34445555566666666666666666666666666666666666666666554 35666666666666666665555444
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+.++.. .|++++|+..++++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|.++|.++.
T Consensus 119 ~~~~~~-------l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 119 RVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHh-------hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence 444443 3456666666666666666677777777777777777788888888888888888778888877777
Q ss_pred HcCC------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHc--
Q 007634 346 DRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDA-- 415 (595)
Q Consensus 346 ~~~~------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~-- 415 (595)
..+. +++|+..+.++++++|++..+|..++.++...| .+++...+++++++.|+. +.++..++.+|...
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~ 270 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 270 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence 6665 577888888888888888888888887765443 577778888887776653 55566666666443
Q ss_pred CCHHHHHHHHHHHHhc
Q 007634 416 GSISLAIDAYEQCLKI 431 (595)
Q Consensus 416 g~~~~A~~~~~~al~~ 431 (595)
++.+.+...+.+++++
T Consensus 271 ~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 271 NQCDNKEDILNKALEL 286 (315)
T ss_dssp TTCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4444455555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=6.6e-24 Score=202.35 Aligned_cols=269 Identities=9% Similarity=-0.085 Sum_probs=166.8
Q ss_pred hCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 60 SRNK-FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN----------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 60 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..++ .++|+.+++++++.+|++..+|..++.++...+ ++++|+.+++++++.+|+++.++..+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 3443 478888888888888888888877766655443 36677777777777777777777777777666
Q ss_pred cCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 129 EGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 129 ~g~--~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
.++ +++|+..++++++.+|.+..++ +...|.++...+.+++|+..++++++.+|.+..+|..+|.++...|+
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhh------hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 553 6777777777777777665542 23445566666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
+++|+..+.++++..|.....+ ..+...+..+++...+.+++...|..
T Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~---------------------------- 241 (334)
T d1dcea1 194 QPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEP---------------------------- 241 (334)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCC----------------------------
T ss_pred HHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcch----------------------------
Confidence 7766666666666554433322 22233444445555555555555544
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
...+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+++|+++++++|.
T Consensus 242 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 242 -------------LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp -------------SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred -------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 4444444444555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHH
Q 007634 367 FSQSLNNLGVVYT 379 (595)
Q Consensus 367 ~~~~~~~la~~~~ 379 (595)
....|..++..+.
T Consensus 309 ~~~y~~~L~~~~~ 321 (334)
T d1dcea1 309 RAAYLDDLRSKFL 321 (334)
T ss_dssp GHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 5555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=3.8e-24 Score=204.07 Aligned_cols=265 Identities=9% Similarity=-0.068 Sum_probs=235.1
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM----------QYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
...+..++|+++++++++.+|++..+|..++.++...+ ++++|+.+++++++.+|++..++..+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 33445689999999999999999999988777766544 48899999999999999999999999999988
Q ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 238 ~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
.++ +++|+..+++++..+|.+...+. ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|+
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~------~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWD------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHH------HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhh------hHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 765 89999999999999999876543 3345556667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+++|+..+++++...|.....+. .+...+..+++...+.+++...|.....+..+|.++...|++.+|+..+.+++
T Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 194 QPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988888776555443 34556788899999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
..+|.+..++..+|.++..+|++++|+++|+++++++|++...+.++
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 99999999999999999999999999999999999999988776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.9e-20 Score=180.29 Aligned_cols=281 Identities=12% Similarity=-0.023 Sum_probs=174.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 155 (595)
+++.....|.++...|++++|+..++++++..|++. .++..+|.++...|++++|+..|+++++..+..... ..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~ 89 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HY 89 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch-HH
Confidence 445666677777777777777777777777777652 356677777888888888888888777765543222 22
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---- 223 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 223 (595)
....+..++.++...|++..|...+.+++...+ .....+..+|.++...|+++.+...+.+++...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 344567778888888888888888888776521 12356778899999999999999999999887654
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC---
Q 007634 224 -YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY--- 299 (595)
Q Consensus 224 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 299 (595)
...++...+..+...+++.++...+.++....+...........++...+..+...+++++|...+++++...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 3567788899999999999999999988776544322222223333444444444455555555555544443332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 300 -ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 300 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
...+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|++.++++++
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223334444444444444444444444422 122233344444444444444444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6e-21 Score=174.66 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 007634 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 209 (595)
.+.+.|+..+++++...+.... ..+.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~---~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 3456777778888776554333 2467789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
|+..|+++++++|+++.++..+|.++..+|++++|+..++++++.+|.+......++..... .+..+.+....
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 162 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-------LDEKQAKEVLK 162 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HCHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-------hhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887655444433333 23333333333
Q ss_pred HHHHhhCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 290 KKALYYNWHYADAMYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
.......+..... .+...+. ..+..+.+...+.......|....+++.+|.++...|++++|+.+|++++..+|
T Consensus 163 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 163 QHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3333333332211 1111111 111233333333333344444455555556666666666666666666665555
Q ss_pred CC
Q 007634 366 NF 367 (595)
Q Consensus 366 ~~ 367 (595)
++
T Consensus 241 ~~ 242 (259)
T d1xnfa_ 241 HN 242 (259)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.8e-19 Score=171.02 Aligned_cols=279 Identities=13% Similarity=-0.006 Sum_probs=203.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-----
Q 007634 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----- 189 (595)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----- 189 (595)
.+++....|.++...|++++|+..++++++..|.+.... .+.++..+|.++...|++++|+..|+++++..+.
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 88 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence 456777789999999999999999999999999865532 3456888999999999999999999999887443
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 007634 190 -YAPAYYNLGVVYSELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 190 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
....+..++.++...|++..|...+.+++...+ .....+..+|.++...|+++.+...+.++....+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 245678899999999999999999999887532 12456778899999999999999999999988776543
Q ss_pred HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 007634 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 333 (595)
.. ....+...+..+...+++.++...+.++...... ...++..++.++...|++++|...+++++...+.+
T Consensus 169 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 169 QQ--QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246 (366)
T ss_dssp GG--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred hh--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 22 2334555566666677777777777776654322 12345566667777777777777777776665443
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 334 ----AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 334 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
...+..+|.++...|++++|+..+++++.. .|....++..+|.+|...|++++|+..+++++++
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344556677777777777777777766633 2334556666777777777777777777776665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.7e-20 Score=169.33 Aligned_cols=225 Identities=16% Similarity=0.130 Sum_probs=142.6
Q ss_pred ChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 172 NTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 172 ~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 45566666666665432 23456666777777777777777777777777777777777777777777766666666
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|+++++++|++ +.++..+|.++...|++++|+..+++++
T Consensus 94 ~~~al~~~p~~-----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 94 FDSVLELDPTY-----------------------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFY 132 (259)
T ss_dssp HHHHHHHCTTC-----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHhhh-----------------------------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666654 4455556666666666666666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHhCCCcHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY----TVQGKMDAAAEMIEKAIAANPTYAE 403 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~ 403 (595)
+.+|.+......++..+...+..+.+...........+..... .+...+ ...+..+.+...+.......|....
T Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (259)
T d1xnfa_ 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 210 (259)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHH
Confidence 6666666666666666666555555444444444443333211 111111 1223345555555556666677778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+++.+|.++..+|++++|+.+|++++..+|++...+
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 888899999999999999999999999988775443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.9e-16 Score=146.34 Aligned_cols=233 Identities=17% Similarity=0.106 Sum_probs=170.2
Q ss_pred chHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 007634 47 EGKDALSYANILRSRN-------------KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g-------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (595)
+++.++..|+.....+ +|++|.++|.++ |.+|...|++++|++.|.+++++.+
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~ 68 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQK 68 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4566677776666543 566777666654 7889999999999999999998732
Q ss_pred ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH-hCChHHHHHHHHHHHhh
Q 007634 114 ------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALKI 186 (595)
Q Consensus 114 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~-~~~~~~A~~~~~~~l~~ 186 (595)
....++..+|.+|...|++++|+..|++++++.+.... ....+.++..+|.++.. .|++++|++.|++++++
T Consensus 69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 23468899999999999999999999999988665432 22345668888888865 69999999999999887
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 187 DPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-------EAYCNMGVIYKNRGDLESAIACYERCLA 253 (595)
Q Consensus 187 ~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~ 253 (595)
.+. ...++..+|.++..+|+|++|+..|++++...+... ..+...+.++...|++..|...++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 332 256688999999999999999999999999877643 4567889999999999999999999999
Q ss_pred cCCCcHHHHhhHHHHHHHhhhhhhh--cCCHHHHHHHHHHHHhhC
Q 007634 254 VSPNFEIAKNNMAIALTDLGTKVKL--EGDINQGVAYYKKALYYN 296 (595)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~ 296 (595)
.+|....... ...+..+...+.. .+.+++|+..|.++.+++
T Consensus 228 ~~~~~~~sre--~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 228 EDPNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp C-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred hCCCccchHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 9987654321 1122222222221 234666666666555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.6e-16 Score=122.75 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
++.+...|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.+|++++|+..|+++++.+|+++.....++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999988754433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.6e-16 Score=146.92 Aligned_cols=215 Identities=15% Similarity=0.104 Sum_probs=154.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
+.++++++-+........+..+. ....++|++|.++|.++ |.+|...|++++|+.+|.+++++.
T Consensus 4 ~~~~l~~aek~~~~~~~~~~~~~--~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 4 PVELLKRAEKKGVPSSGFMKLFS--GSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHS--CCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHhc--CCccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45556665554433322221111 11233567787777665 888999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 007634 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSE-LMQYDTALGCYEKAAL 219 (595)
Q Consensus 147 ~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 219 (595)
..... ....+.++..+|.+|...|++++|++.+++++++.+.. ..++..+|.++.. .|++++|+..|+++++
T Consensus 68 ~~~~~-~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~ 146 (290)
T d1qqea_ 68 KKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (290)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 43221 12246779999999999999999999999999885543 5678889988865 6999999999999987
Q ss_pred hCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 220 ERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 220 ~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+.+. ...++..+|.++..+|++++|+..|++++...+............+...+.++...+++..|...++++.
T Consensus 147 l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6432 2566899999999999999999999999999888765555555555555555555566666666666665
Q ss_pred hhCCC
Q 007634 294 YYNWH 298 (595)
Q Consensus 294 ~~~~~ 298 (595)
+.+|.
T Consensus 227 ~~~~~ 231 (290)
T d1qqea_ 227 SEDPN 231 (290)
T ss_dssp CC---
T ss_pred HhCCC
Confidence 55554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.7e-18 Score=167.95 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
+|+++|++++++.|+.+.++.++|.++...|++++| |++++..+|+....+...+.+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999887 8999999987666554333322 22356788888887765
Q ss_pred CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 007634 255 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 334 (595)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 334 (595)
......... .....+.+....+.++.|+..+.+++..+|++...+..+|..+...|++++|+..+.+++..++ .
T Consensus 79 ~~~~~~~~~----~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~ 152 (497)
T d1ya0a1 79 RANPNRSEV----QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--Q 152 (497)
T ss_dssp SSCTTTTHH----HHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--H
T ss_pred ccCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--H
Confidence 432211100 0111233444567888999999999999999999999999999999999999999999988766 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.++.++|.++...|++++|+.+|++|++++|+++.+++++|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 007634 415 A 415 (595)
Q Consensus 415 ~ 415 (595)
.
T Consensus 233 ~ 233 (497)
T d1ya0a1 233 A 233 (497)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.7e-18 Score=169.53 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 007634 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (595)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (595)
+|+++|++++++.|+.++++.++|.++..+|++++| |++++..+|+....+......+.. .+..+++.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~---------~y~~~ie~ 71 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNH---------AFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHH---------HTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHH---------HHHHHHHH
Confidence 789999999999999999999999999999999886 899999998776554433322211 34567777
Q ss_pred HHHHHhhCC--CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 289 YKKALYYNW--HYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 289 ~~~~~~~~~--~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+++..+... +.. .....++.+....+.|+.|+..+.+++.++|++...+.++|..+...|++++|+..+++++..+|
T Consensus 72 ~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 151 (497)
T d1ya0a1 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151 (497)
T ss_dssp HHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH
T ss_pred HHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH
Confidence 877775442 222 22334566677788899999999999999999999999999999999999999999999988765
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (595)
..++.++|.++...|++++|+.+|+++++++|++..++.+||.++...|+..+|+.+|.+++..+|..+.++.|+...
T Consensus 152 --~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 --QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999987544
Q ss_pred h
Q 007634 446 M 446 (595)
Q Consensus 446 ~ 446 (595)
+
T Consensus 230 ~ 230 (497)
T d1ya0a1 230 L 230 (497)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.2e-16 Score=121.54 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (595)
.|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++++|.++..+|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 386 AAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
+|+..|+++++++|+++.++..++.
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4444444444444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=9.5e-15 Score=136.14 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------------QYDTALGCYEKAALE-RPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~ 237 (595)
...+...|++++...|.++.+|...+..+...+ ..++|...|+++++. .|.+...|...+.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 345666788888888888888877766554322 234444455554442 34444444444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCH
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKF 316 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~ 316 (595)
.|++ ++|...|+++++..|.+ ..+|..++......|++
T Consensus 112 ~~~~-----------------------------------------~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 112 RMKY-----------------------------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp TTCH-----------------------------------------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cccH-----------------------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 4444 44555555554444443 23566667777777788
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
+.|...|+++++..|.+...+...+..... .|+.+.|..+|++++...|+++..|..++..+...|+++.|...|++++
T Consensus 151 ~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888888888888888888888777776543 5788888888888888888888888888888888888888888888888
Q ss_pred HhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 396 AANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 396 ~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
...|.+ ...|..........|+.+.+.++++++.++.|+....
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 876643 3467777777778899999999999999988877554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-15 Score=130.08 Aligned_cols=132 Identities=16% Similarity=0.280 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (595)
+++.|..+...|++++|++.|.++ .+.++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 345677888888888888888753 45567788888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 383 KMDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++++|+..|++++...+.+ .++++++|.++..+|++++|.+.+.+++++.|+...
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence 8888888888888764432 478899999999999999999999999999997543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=4e-14 Score=131.83 Aligned_cols=192 Identities=8% Similarity=0.012 Sum_probs=136.0
Q ss_pred hCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~ 247 (595)
.+..++|...|+++++. .|.+...|..++.++...|++++|...|+++++..|.+. .+|..++......|+++.|...
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34568899999999975 788899999999999999999999999999999998764 5788999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
|+++++..|.....+...+..... ..|+.+.|..+|++++...|.++..+...+..+...|+++.|..+|++++
T Consensus 157 ~~~al~~~~~~~~~~~~~a~~e~~------~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 157 FKKAREDARTRHHVYVTAALMEYY------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHTSTTCCTHHHHHHHHHHHH------TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH------hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999888876655443332211 23566666666666666666666666666666666666666666666666
Q ss_pred hhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 328 HFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 328 ~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
...|.+ ...|..........|+.+.+..+++++.+..|..
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 554432 2344444444455555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.6e-15 Score=124.63 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (595)
.+...|..++..|+|++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|++..++..+|.++..+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34556777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
|++++|+..+++++.++|+++.++..++.+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 88888888888888888888777777766643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-15 Score=128.68 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
-.++..|..++..|+|++|++.|+++ .|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++..
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 35678899999999999999999864 566889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAA---------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~---------~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
+|++++|+..|++++...+.+.... ...+.+++++|.++...|++++|++.+.+++...|+
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999998776543210 011234555666666666666666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.8e-15 Score=123.62 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.+...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..++..+|.++
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~ 158 (595)
...|++++|+..+++++.+.|++......+..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~ 120 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999887554433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=4.2e-15 Score=129.33 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+++.+...|..++..|+|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPA 152 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~ 152 (595)
+..+|++++|+..|++++++.|++...
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 999999999999999999988765443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=5.1e-15 Score=128.78 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
+..+...|..++..|++++|+..|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+++|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 414 DAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.+|++++|+..|+++++++|++...
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHH
Confidence 6666666666666666666655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.7e-13 Score=114.55 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (595)
...|..++..|++++|+..|++++...|.. ..++.++|.+|.++|++++|+.++++++.++|+++
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~ 96 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 96 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence 344455555555555555555555443322 23455566666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (595)
.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666555544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.53 E-value=4.9e-14 Score=108.50 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
.+.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+|..+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 45566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHH
Q 007634 417 SISLAIDAYEQCL 429 (595)
Q Consensus 417 ~~~~A~~~~~~al 429 (595)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.52 E-value=4e-14 Score=109.03 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
.+..+..|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|.
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH
Q 007634 128 DEGRLVEAAESYHKAL 143 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l 143 (595)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=8.4e-12 Score=113.16 Aligned_cols=230 Identities=21% Similarity=0.295 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHhhH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNM 265 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (595)
+|.+++.+|..+...+++++|+++|+++.+. ++..+++.+|.+|.. ..++..|..+++.+.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 3556666676666667777777777766554 356666667766665 556666666666655433 33333333
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLG 341 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la 341 (595)
+..+... .....+.+.|...++.+.... ...+...++..+.. ......|...+.+... +.+...+..+|
T Consensus 77 ~~~~~~~---~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~ 149 (265)
T d1ouva_ 77 GNLYYSG---QGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHT---SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred ccccccc---cccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhh
Confidence 3332211 112456666777777666543 34445555555543 3345666666665544 44567777778
Q ss_pred HHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 342 VIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 342 ~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
.++.. ..+...+..+++.+.+ +.++.+.+++|.++.. ..++++|+.+|+++.+. .++.+.++||.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence 77775 4566777777777765 4567888888888776 56788888888888776 35778888888887
Q ss_pred H----cCCHHHHHHHHHHHHhcCCC
Q 007634 414 D----AGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 414 ~----~g~~~~A~~~~~~al~~~p~ 434 (595)
. ..++++|.++|++|....+.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5 34788888888888877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2e-13 Score=108.00 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
..+..+|..++..|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999988888888999999
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
+|.++...+++++|+.+|++++..+++ +.....+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 999999999999999999999988765 4444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=1.4e-13 Score=115.17 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
+|....++.++|.++.++|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++
T Consensus 73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHH
Q 007634 410 VLYRDAGSISL 420 (595)
Q Consensus 410 ~~~~~~g~~~~ 420 (595)
.+........+
T Consensus 153 ~~~~~l~~~~~ 163 (169)
T d1ihga1 153 KVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.9e-13 Score=109.73 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSYKP--------AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
...|..++..|++++|+..|++++...|.... .......++.++|.++...|++++|+..+++++.++|+++
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~ 96 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 96 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence 33444444444444444444444444333211 1112233466788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877666555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.49 E-value=6.8e-13 Score=110.63 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH---------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (595)
+...|..++..|+|.+|+..|++++...+. ...++.++|.+|..+|++++|+..++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 344455555555555555555555543221 13356667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (595)
..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+...
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence 7777777777777777777777777777777777777777777766655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-13 Score=107.45 Aligned_cols=106 Identities=7% Similarity=-0.073 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhc
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQ 381 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~ 381 (595)
+..+...+++++|.+.|++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|.+|...
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555544322 2233555555554444332 23444555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
|++++|+.+|+++++++|++..+...++.+.
T Consensus 86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 86 KEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 5555555555555555555544444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.48 E-value=4.8e-11 Score=108.05 Aligned_cols=227 Identities=20% Similarity=0.260 Sum_probs=183.8
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (595)
.++.+|..+...+++.+|+++|+++.+. ++..+++.||.+|.. ..++..|..+++.+... .++.+...+|.+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~ 79 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccc
Confidence 4888999999999999999999999775 578999999999998 77999999999998765 467888899988
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007634 235 YKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (595)
Q Consensus 235 ~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 310 (595)
+.. ..+.+.|...++.+....+.. ....++..+.. ..........+...+.+... +.+...+..+|.++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~--a~~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYAE--GCASLGGIYHD---GKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY 152 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH---CSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhhh--HHHhhcccccC---CCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence 875 568899999999998765533 33333333322 11235677888888887665 45678899999999
Q ss_pred Hh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--
Q 007634 311 GE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-- 380 (595)
Q Consensus 311 ~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-- 380 (595)
.. ..+...+..+++.+.+ +.++.+.+.+|.++.. ..++++|+.+|+++.+. .++.++++||.+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence 86 4567788888888775 4579999999999987 67999999999999887 568999999999986
Q ss_pred --cCCHHHHHHHHHHHHHhCCC
Q 007634 381 --QGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 381 --~g~~~~A~~~~~~al~~~p~ 400 (595)
..++++|.++|+++......
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccCHHHHHHHHHHHHHCcCH
Confidence 44899999999999988654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=4.2e-13 Score=109.81 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
++.++|.+|..+|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~ 140 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.6e-13 Score=106.67 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---MGRLAFDSFSEAVKLDPQN--ACAHTHCGILYK 127 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 127 (595)
.++..+...+++++|.+.|+++++.+|.++.+++.+|.++...+ ++++|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999998744 5567999999999998765 458999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
..|++++|+.+|+++++++|++..+...+..+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999885544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.3e-13 Score=106.69 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
..+..+|..++..|+|++|+.+|.++++++|+++.++.++|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999888888888999999
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 305 (595)
+|.++...+++++|+..|++++..++. ++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 117 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence 999999999999999999999887764 444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.47 E-value=1.3e-12 Score=106.81 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------VEAHIGKGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (595)
.+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.++..+|++++|+..++++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 35567789999999999999999999999865532 23667899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988855544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.44 E-value=4.7e-13 Score=111.96 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 307 (595)
+...|..+...|++++|+..|.++++..+... +...........|....++.++|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~nla 84 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------AAAEDADGAKLQPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------------HHSCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh-------------------------hhhhhHHHHHhChhhHHHHHHHH
Confidence 45567777777888888888877775432211 01111122233455667888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 387 (595)
.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.44 E-value=1.8e-13 Score=110.58 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=66.1
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
+.+.+.+++|+..|+++++.+|++++++..+|.++...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHH
Confidence 3444555555555555555555555555555555554433322211 1223455666
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQG-----------KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.|+++++++|+++.+++++|.+|..+| ++++|.++|+++++++|++..++..|+.+...
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 666666666666666666666665544 35667777777777777777777666666533
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.43 E-value=4.3e-12 Score=105.68 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (595)
+...|..++..|++.+|+..|++++...+... ........++.++|.++...|++++|+..+++++.++|.+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 44455555555555555555555554332211 1122234557788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES-AIACYERC 251 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~a 251 (595)
..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+...+ ....|.+.
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888777665543 33444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.39 E-value=5.4e-13 Score=107.71 Aligned_cols=119 Identities=20% Similarity=0.162 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+-+..|++++.....-....-.-+.++..+|.++...+++..+.+ ..+.+++|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHHH
Confidence 445667777765444333333445667777766654333322211 12334556666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHH
Q 007634 323 YELAFHFNPHCAEACNNLGVIYKDRD-----------NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (595)
|+++++++|+++.+++++|.+|..+| .+++|+++|+++++++|++..++..++.+....+.+.
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~ 137 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHA 137 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655443 3678888888888888888888887777754443333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.4e-11 Score=87.31 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=71.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (595)
.+++..+.+|..+++.|+|.+|+.+|+++++..|.+ ..++..+|.++...|++++|+..++++++++|+++.+
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence 467889999999999999999999999999875543 5788899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007634 119 HTHCGILYKD 128 (595)
Q Consensus 119 ~~~la~~~~~ 128 (595)
+.+++.+...
T Consensus 83 ~~Nl~~~~~~ 92 (95)
T d1tjca_ 83 NGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888765543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.17 E-value=2.3e-11 Score=99.73 Aligned_cols=103 Identities=19% Similarity=0.041 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-- 114 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 114 (595)
-..+..|..++..|+|++|+..|+++++..|+. ..++.++|.++..+|++++|+..+++++++.|.
T Consensus 10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~ 89 (156)
T d2hr2a1 10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 89 (156)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence 345566999999999999999999999987764 357889999999999999999999999987542
Q ss_pred ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 115 ---------NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 115 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
...+++.+|.+|..+|++++|+..|++++++.|+...
T Consensus 90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 2347889999999999999999999999998665433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.16 E-value=3.8e-11 Score=98.45 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------
Q 007634 341 GVIYKDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-------- 400 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 400 (595)
|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 555566666666666666666665443 346778888888888888888888888876331
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 401 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 401 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
...+++++|.+|..+|++++|+..|++++++.|+.....
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 234788999999999999999999999999988665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=7.3e-11 Score=87.03 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
++-.+.+|.++...|++.+|+.+|++++++.|.+.......+.++..+|.++...|++++|+..|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 45677889999999999999999999998877665544455667788888888888888888888888888888888887
Q ss_pred HHHHHHH
Q 007634 196 NLGVVYS 202 (595)
Q Consensus 196 ~la~~~~ 202 (595)
+++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.09 E-value=7.9e-11 Score=104.73 Aligned_cols=134 Identities=9% Similarity=-0.040 Sum_probs=112.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHH
Q 007634 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 387 (595)
.-.+..|++++|+..++++++.+|++..++..++.++...|++++|+..|+++++++|++...+..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888777776666
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 388 AEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 388 ~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
...+.+... ..|.....+...+.++...|+.++|.+.++++.+..|+.+..+.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 554433222 245556778888999999999999999999999999999877655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.02 E-value=3.9e-10 Score=100.16 Aligned_cols=131 Identities=10% Similarity=-0.058 Sum_probs=99.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (595)
++.++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999888888876666655
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 007634 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (595)
Q Consensus 135 A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (595)
+...+.+.....+ +..+ ..+...+..+...|++++|.+.++++.+..|..+
T Consensus 83 a~~~~~~~~~~~~--p~~~----~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLGE--NEEL----TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCCS--CHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhcccC--chHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 5444333222211 1211 1244456666677777777777777777776654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=1.9e-08 Score=83.47 Aligned_cols=118 Identities=14% Similarity=-0.010 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
.+.+...|......|++++|+..|.+++.+.+......... +. ........+.+....++..++.++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999998877653221110 11 1111222233445678899999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
..|++++|+.+++++++.+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=1.6e-08 Score=83.80 Aligned_cols=117 Identities=15% Similarity=-0.078 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 304 (595)
...+...|......|++++|+..|.+++.+.+......... +.+- ......+.+....++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~--------------~~w~-----~~~r~~l~~~~~~a~~ 71 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD--------------FQFV-----EPFATALVEDKVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT--------------STTH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc--------------hHHH-----HHHHHHHHHHHHHHHH
Confidence 45566777777888888888888888887776543211100 0000 0011111112234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
.++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=2.4e-06 Score=63.49 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 368 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 368 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
..+.+++|+++.+.. +.++|+..++.++..+|.+. ++++.||..|.++|++++|+.+++++++++|++..+..-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 567888888887654 45678888888888887664 788888888888888888888888888888888877543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=6.6e-06 Score=64.11 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSIS 419 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 419 (595)
.+.++|+.+|+++.+. .++.+.+.+|.+|.. ..++++|+.+|+++.+. .++.+.+.||.+|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 4556666666665543 455566666666554 34566666666666554 345666666666665 34666
Q ss_pred HHHHHHHHHHhcC
Q 007634 420 LAIDAYEQCLKID 432 (595)
Q Consensus 420 ~A~~~~~~al~~~ 432 (595)
+|..+|+++.+..
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.27 E-value=2.4e-06 Score=63.52 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 82 VEAHIGKGICLQMQN---MGRLAFDSFSEAVKLDPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 82 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
++..+..|.++.+.. +.++|+.+++.+++.+|.+. +.++.+|..|.+.|+|++|..+++++++++|++..+....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 566666777666543 34567777777776666543 5667777777777777777777777777777776665433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=1.8e-05 Score=61.57 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 007634 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVE 355 (595)
Q Consensus 280 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 355 (595)
.++++|+.+|+++.+.. ++.+.+.++. ....++++|+.+++++.+. .++.+.+.+|.+|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47899999999998775 4455666654 4567899999999999875 578999999999986 568999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 399 (595)
+|+++.+. .++.+.+.||.+|.. ..+.++|+.+|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999875 578899999999987 5689999999999988754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=0.0069 Score=57.57 Aligned_cols=356 Identities=7% Similarity=-0.132 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCcHHHHHHH---
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ--NMGRLAFDSFSEAVKLDPQNACAHTHC--- 122 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l--- 122 (595)
-+..+..|...+.+|++.++..+..++ +..|-- .+...-...... .... .+...++.+|+.|......
T Consensus 6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~--pYl~~~~l~~~~~~~~~~----~i~~Fl~~~p~~P~~~~lr~~~ 78 (450)
T d1qsaa1 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLY--PYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRF 78 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTH--HHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCH--HHHHHHHHHhccccCCHH----HHHHHHHHCCCChhHHHHHHHH
Confidence 346778888888888888887776664 334422 222222222222 2222 2344556677766543222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-------------
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------------- 189 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------------- 189 (595)
-..+...+++.+.+..+ ...|.+... -...+.+....|+..+|...+..+......
T Consensus 79 l~~L~~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~ 147 (450)
T d1qsaa1 79 VNELARREDWRGLLAFS----PEKPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWR 147 (450)
T ss_dssp HHHHHHTTCHHHHHHHC----CSCCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHhc----cCCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 23344555555433322 223444433 223334445556666666655554433222
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHhCCCCHH--HHHHHHHHHHHc
Q 007634 190 -----YAPAYYNLGVVYSELMQYDTALGCYEKA------------------------ALERPMYAE--AYCNMGVIYKNR 238 (595)
Q Consensus 190 -----~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~--~~~~la~~~~~~ 238 (595)
.+..+..........|++..|...+..+ ....+.+.. .....+..-...
T Consensus 148 ~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~ 227 (450)
T d1qsaa1 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR 227 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhc
Confidence 2233333444444555555544443321 011111111 112223233334
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 318 (595)
.+.+.|...+.......+........ ....++......+..+.+...+........+.......++ .....+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQE---LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHH---HHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHH
Confidence 56666666666655544443332221 1222233333345556666666555544433333333333 3445567776
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--------------------------C---HH
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--------------------------F---SQ 369 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------------~---~~ 369 (595)
+...+...-......+...+-+|..+...|+.++|...|..+... ++ . ..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcC
Confidence 666665543333334566677777777777777777777765542 10 0 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
.-...+..+...|+...|...+..++... ++.-...++.+..+.|.++.|+....++
T Consensus 383 ~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 383 PEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 12233455556666666666655554322 2444555566666666666666555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.034 Score=52.57 Aligned_cols=309 Identities=9% Similarity=-0.111 Sum_probs=177.4
Q ss_pred HHHHHcCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 72 EIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 72 ~~~l~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
...++.+|+.+...... -..+...++++..+..+ ...|.+....+..+.+....|+..+|...+..+......
T Consensus 59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~ 134 (450)
T d1qsaa1 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS 134 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 34455566665432222 22334455554433322 234556666666666666777777776666666554333
Q ss_pred CHHHHHHHHHH-----------HHHhHHHHHHhCChHHHHHHHHH------------------------HHhhCCCCHH-
Q 007634 149 YKPAAECLAIV-----------LTDLGTSLKLAGNTQDGIQKYYE------------------------ALKIDPHYAP- 192 (595)
Q Consensus 149 ~~~~~~~~a~~-----------~~~l~~~~~~~~~~~~A~~~~~~------------------------~l~~~~~~~~- 192 (595)
.+.....+... +..........|++..|...+.. .....+....
T Consensus 135 ~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~ 214 (450)
T d1qsaa1 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT 214 (450)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHH
T ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhh
Confidence 32221111111 11122223333444333332211 1111222222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 193 -AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY----KNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 193 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
.....+..-....+.+.|...+.......+.....+....... ...+..+.+...+........+........+.
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~ 294 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence 1223344444456788888888887776665554443333333 33566778888777776655544322222221
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------------
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----------------- 330 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----------------- 330 (595)
....+++..+...+..........+...+-+|..+...|+.++|...|..+....
T Consensus 295 --------al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~ 366 (450)
T d1qsaa1 295 --------ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYEL 366 (450)
T ss_dssp --------HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCC
T ss_pred --------HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCC
Confidence 2235688888887776544334457788899999999999999999998876420
Q ss_pred --------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 331 --------PHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 331 --------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
+.. ...-...+..+...|+...|...+..++.. .+..-...++.+..+.|.++.|+....++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000 112245677888999999999999888754 34667778899999999999999877765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.065 Score=47.72 Aligned_cols=52 Identities=4% Similarity=0.045 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
....+.++..-...+++...+. ++..+...++.+|...++++. .++.++..-
T Consensus 256 ~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 256 NYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH----HHHHHHHhc
Confidence 3445566666677777775443 345688888888888888644 444554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.11 E-value=0.083 Score=46.99 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
.-..|..+.+.|.++.|...|... .+ +..+..++...++++.|.+.+.+. +....|..+.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~----~d-----------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~ 76 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNV----SN-----------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 76 (336)
T ss_dssp ------------CTTTHHHHHHHT----TC-----------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC----CC-----------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHH
Confidence 344566677777777777777643 11 344445556677888887777655 4567777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
..+.+.....-|.-. . .....+++-...+...+...|.+++.+.+++.++...+.+...+..++.++.
T Consensus 77 ~~l~~~~e~~la~i~-~---~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-G---LHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHTTCHHHHHHT-T---TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHH-H---HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence 777776665543221 0 0111245555566777778888888888888887776766655555554443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.33 E-value=4.7 Score=32.82 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHc
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 111 (595)
+-+.++.+|...-+.++|++.+...+++++.+|. +.+-...+..+|- ..|....+...+....+.
T Consensus 2 ~re~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k 68 (230)
T d2o02a1 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK 68 (230)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998876 4555666666654 335666676666655443
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.30 E-value=8.3 Score=31.38 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (595)
-+..+|.+..+.++|++.+.+.+++++.
T Consensus 6 ~lv~~AklaeqaeRy~dm~~~mk~v~~~ 33 (236)
T d1o9da_ 6 ENVYMAKLAEQAERYEEMVEFMEKVSNS 33 (236)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554
|