Citrus Sinensis ID: 007640
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUE9 | 536 | Pentatricopeptide repeat- | yes | no | 0.880 | 0.977 | 0.536 | 1e-159 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.709 | 0.569 | 0.291 | 1e-58 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.806 | 0.642 | 0.281 | 2e-56 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.692 | 0.565 | 0.307 | 1e-55 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.710 | 0.561 | 0.304 | 2e-54 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.667 | 0.659 | 0.286 | 2e-54 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.684 | 0.444 | 0.308 | 1e-53 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.689 | 0.561 | 0.293 | 4e-53 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.576 | 0.566 | 0.307 | 7e-53 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.6 | 0.588 | 0.313 | 2e-52 |
| >sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/535 (53%), Positives = 367/535 (68%), Gaps = 11/535 (2%)
Query: 58 VRASTIAAIAHFHGLANGGS--RPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115
+R + AIAHFH ++GG+ RP E W VK+V TL + SD C
Sbjct: 2 IRTTFATAIAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFC 61
Query: 116 YLCEKLSPLNSLEVIKRLD-NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDS 174
YL + L+P S EV+K+LD NP +G +F EFSR L++ HSF TYNL+ RSLC+ GLHD
Sbjct: 62 YLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDL 121
Query: 175 VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234
+F+ M+SDG PN+ ++ F VSS GK A LL Q EV + NSLLN
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSLLN 179
Query: 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294
LVK + ++A+ +F E+ R S DT TFNILI+GL +G+ +KA E M FGC P
Sbjct: 180 TLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEP 239
Query: 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354
DIVTYNTLI G C+ NE+ + E+ K+VK S SPDVVTYTS+ISGYCK GKM +A+ +
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299
Query: 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414
++M GI P+ VTFNVL+DG+ K G M++AE +R +M+SFG PDVVTF+SLIDGYCR
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359
Query: 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474
GQ++QG +L +EM + + PN +T++ILINALC ENRL AR L QL D++P+PFM
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534
YNPVIDGFCKAG V+EANVIV EME+K+CKPDK+TFTILIIGHCMKGRM EA+SIF+KM+
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479
Query: 535 RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTNT 589
IGC+PD ITV+SL+SCLLK GM EA+ + Q A + Q+ VPL T T
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQS------NNVVPLETKT 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 218/425 (51%), Gaps = 3/425 (0%)
Query: 142 FLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC 201
F EF V + N + +YN+V+ +C++G + M G+ P+ V+
Sbjct: 234 FREFPEVGVCWNVA--SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291
Query: 202 IRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT 261
R G+ D L+ + + ++++Y S++ L + EA F E R PDT
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 262 WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKE 321
+ LI G + G+++ A +FFY+M S +PD++TY +ISG C++ ++ +L E
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 322 VKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381
+ F PD VT+T +I+GYCK G M A ++N M G P+ VT+ LIDG K G
Sbjct: 412 M-FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 382 NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT 441
++ SA + M G P++ T++S+++G C++G + + +KL E + L+ + T+T
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530
Query: 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501
L++A CK ++ A+ LK++ L P +N +++GFC G +++ ++ M K
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 502 RCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561
P+ TF L+ +C++ + A +I+ M G PD T +L+ K EA
Sbjct: 591 GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650
Query: 562 FRIMQ 566
+ + Q
Sbjct: 651 WFLFQ 655
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/490 (28%), Positives = 241/490 (49%), Gaps = 10/490 (2%)
Query: 83 KEVNYRCSNEFWFVKVVC-TLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLK 141
K +N+ ++F+ ++ C TL + + + A+ L E ++ K LD+ L
Sbjct: 67 KFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAA-------KTLDDEYASLV 119
Query: 142 FLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC 201
F + ++LV++S + L D + ++ G +P + +
Sbjct: 120 FKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDAT 179
Query: 202 IRAGK-CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPD 260
IR+ + A+ + + +V+ + F YN L+ N D A+ +F + P+
Sbjct: 180 IRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPN 239
Query: 261 TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLK 320
T+N LI G ++ ++ F+ M G P++++YN +I+GLCR + +L
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299
Query: 321 EVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380
E+ + +S D VTY ++I GYCK G +A ++ EM G+ PS +T+ LI K
Sbjct: 300 EMNRRG-YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTF 440
GNM A ++M G P+ T+++L+DG+ + G +N+ ++ EM SP+V T+
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500
LIN C ++ DA L+ +K L P Y+ V+ GFC++ +VDEA + EM E
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478
Query: 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560
K KPD +T++ LI G C + R EA ++ +MLR+G PD+ T +LI+ G +
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538
Query: 561 AFRIMQRASE 570
A ++ E
Sbjct: 539 ALQLHNEMVE 548
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 210/420 (50%), Gaps = 8/420 (1%)
Query: 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217
TYN V+ LC+ G ++ + VF M G P+S + + G + + S
Sbjct: 307 TYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM 366
Query: 218 RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEV 277
R +V ++S+++ + N D+A+ F PD + ILIQG R G +
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426
Query: 278 KKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337
A +M GC+ D+VTYNT++ GLC+ + +L E+ ++ F PD T T
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF-PDSYTLTI 485
Query: 338 VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397
+I G+CKLG + A ++ +M I+ VT+N L+DGFGKVG++ +A+ + M+S
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457
LP +++S L++ C G L + ++ DEM KN+ P V +I C+ +D
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR--CKPDKVTFTILII 515
FL+++ VP YN +I GF + N+ +A +V +MEE++ PD T+ ++
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665
Query: 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575
G C + +M EA + KM+ G PD T +I+ + EAFRI D+ LQ
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI-----HDEMLQ 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 218/434 (50%), Gaps = 11/434 (2%)
Query: 140 LKFLEFSRVNLS---LNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEF 196
LK +E S +S + T+N+++++LC ++ + M S G +P+
Sbjct: 170 LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY 256
+ I G D A + Q + S N +++ K+ ++A+ +E +
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE---MS 286
Query: 257 SQ----PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEV 312
+Q PD +TFN L+ GL + G VK A E M G PD+ TYN++ISGLC++ EV
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372
E+L ++ + SP+ VTY ++IS CK ++++AT + + S GI P TFN
Sbjct: 347 KEAVEVLDQM-ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405
Query: 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432
LI G N A + E M S G PD T++ LID C G+L++ L + +M+
Sbjct: 406 LIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492
+ +V T+ LI+ CK N+ +A +++ + + YN +IDG CK+ V++A
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525
Query: 493 VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552
++ +M + KPDK T+ L+ C G + +A I M GC PD +T +LIS L
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Query: 553 LKGGMPNEAFRIMQ 566
K G A ++++
Sbjct: 586 CKAGRVEVASKLLR 599
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 207/398 (52%), Gaps = 1/398 (0%)
Query: 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217
TYN ++ +C G + M + + S R G DAA L +
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 254
Query: 218 RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEV 277
+ S YNSL+ L K ++ + K+ P+ TFN+L+ + G++
Sbjct: 255 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 314
Query: 278 KKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337
++A E + +M + G SP+I+TYNTL+ G C N ++ + +L ++ +++ SPD+VT+TS
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTS 373
Query: 338 VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397
+I GYC + ++D ++ ++ G+ +AVT+++L+ GF + G + AE + + M+S G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457
LPDV+T+ L+DG C NG+L + L++ ++++ + + +T +I +CK ++ DA
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517
L + P Y +I G CK G++ EAN+++ +MEE P+ T+ LI H
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553
Query: 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555
G + + + +M G + D ++ +I LL G
Sbjct: 554 LRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSG 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 212/444 (47%), Gaps = 37/444 (8%)
Query: 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218
YN ++ SL GL D ++ V+ M D PN V+ + G + A +S+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 219 PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKE------------YFRLYSQ-------- 258
+ F Y SL+ ++ + D A +F E Y L
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 259 ---------------PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI 303
P T+ +LI+ L +A +M G P+I TY LI
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 304 SGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGI 363
LC + + ELL ++ + P+V+TY ++I+GYCK G ++ A + M S +
Sbjct: 366 DSLCSQCKFEKARELLGQM-LEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424
Query: 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLK 423
P+ T+N LI G+ K N+ A + +ML LPDVVT++SLIDG CR+G + +
Sbjct: 425 SPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483
Query: 424 LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483
L M + L P+ +T+T +I++LCK R+ +A L+ + P MY +IDG+C
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543
Query: 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDI 543
KAG VDEA++++ +M K C P+ +TF LI G C G++ EA + KM++IG P
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603
Query: 544 TVNSLISCLLKGGMPNEAFRIMQR 567
T LI LLK G + A+ Q+
Sbjct: 604 TDTILIHRLLKDGDFDHAYSRFQQ 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 212/416 (50%), Gaps = 6/416 (1%)
Query: 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQ 216
+T+N V+ LC+ + + + M G P+ + ++ + G+ DAAK L +
Sbjct: 288 ETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347
Query: 217 FRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS-QPDTWTFNILIQGLSRIG 275
E+ + +N+L++ V D+A + + Y PD T+N LI G + G
Sbjct: 348 IPKPEIVI----FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403
Query: 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTY 335
V A E +DM + GC P++ +Y L+ G C++ ++ + +L E+ P+ V +
Sbjct: 404 LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS-ADGLKPNTVGF 462
Query: 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLS 395
+IS +CK ++ +A I+ EM G KP TFN LI G +V + A ++ M+S
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 396 FGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLND 455
G + + VT+++LI+ + R G++ + KL +EM + + T+ LI LC+ ++
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 456 ARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515
AR +++ + P N +I+G C++G V+EA EM + PD VTF LI
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642
Query: 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571
G C GR+ + +++F K+ G PD +T N+L+S L KGG +A ++ ED
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 203/348 (58%), Gaps = 5/348 (1%)
Query: 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG 291
L+ AL+K+N + + Y++KE R QP+ +TFN++I L + G++ KA + DM +G
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 292 CSPDIVTYNTLISGLCRV---NEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348
CSP++V+YNTLI G C++ ++ + +LKE+ +++ SP++ T+ +I G+ K +
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM-VENDVSPNLTTFNILIDGFWKDDNL 312
Query: 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408
+ ++ EM +KP+ +++N LI+G G + A MR++M+S G P+++T+++L
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372
Query: 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468
I+G+C+N L + L + +KG+ P + +LI+A CK +++D ++++ +
Sbjct: 373 INGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432
Query: 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528
VP YN +I G C+ GN++ A + ++ K PD VTF IL+ G+C KG +A
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAM 491
Query: 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576
+ +M ++G P +T N ++ K G A + + +++ L++
Sbjct: 492 LLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 193/360 (53%), Gaps = 3/360 (0%)
Query: 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEF 283
++ +++N L+N K+ N +A +F E + QP +FN LI G ++G + + F
Sbjct: 238 LNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRL 297
Query: 284 FYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC 343
+ M PD+ TY+ LI+ LC+ N++ H L E+ K P+ V +T++I G+
Sbjct: 298 KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEM-CKRGLIPNDVIFTTLIHGHS 356
Query: 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403
+ G++D Y +M S G++P V +N L++GF K G++V+A + + M+ G PD +
Sbjct: 357 RNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKI 416
Query: 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463
T+++LIDG+CR G + L++ EM + + F+ L+ +CKE R+ DA R L+++
Sbjct: 417 TYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREM 476
Query: 464 KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523
+ P Y ++D FCK G+ ++ EM+ P VT+ +L+ G C G+M
Sbjct: 477 LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536
Query: 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAV 583
A + + ML IG PDDIT N+L+ + N + R +Q+ L S+K V
Sbjct: 537 KNADMLLDAMLNIGVVPDDITYNTLLEGHHRHA--NSSKRYIQKPEIGIVADLASYKSIV 594
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| 359484268 | 641 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.873 | 0.606 | 0.0 | |
| 449446624 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.994 | 0.610 | 0.0 | |
| 224068454 | 512 | predicted protein [Populus trichocarpa] | 0.857 | 0.996 | 0.601 | 0.0 | |
| 449488099 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.994 | 0.608 | 0.0 | |
| 255542424 | 532 | pentatricopeptide repeat-containing prot | 0.889 | 0.994 | 0.607 | 0.0 | |
| 15225031 | 536 | pentatricopeptide repeat-containing prot | 0.880 | 0.977 | 0.536 | 1e-157 | |
| 222422989 | 536 | AT2G06000 [Arabidopsis thaliana] | 0.878 | 0.975 | 0.537 | 1e-157 | |
| 297835856 | 536 | pentatricopeptide repeat-containing prot | 0.890 | 0.988 | 0.531 | 1e-156 | |
| 356564752 | 544 | PREDICTED: pentatricopeptide repeat-cont | 0.897 | 0.981 | 0.517 | 1e-154 | |
| 356509602 | 598 | PREDICTED: pentatricopeptide repeat-cont | 0.845 | 0.841 | 0.515 | 1e-150 |
| >gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/575 (60%), Positives = 428/575 (74%), Gaps = 15/575 (2%)
Query: 23 RRSNSIDFC---GHKSEAAANGVGLPMTLLFFTVRPSRVRASTIAAIAHFHGLANGGSRP 79
R +N+I C H+++ +GV L MTLL F RPSRVRAS IA IA FH A G SR
Sbjct: 8 RGANNISLCLLCAHQTQPC-DGVALQMTLLLFITRPSRVRASKIA-IAQFHEHAVGISRN 65
Query: 80 FDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLG 139
E N E W VKV+CTL +R+ L D C Y + L+P + EV++ L+NP+L
Sbjct: 66 RPEVIQN----PENWIVKVICTLCVRTHSL-DACLDYFSKTLTPSIAFEVVRGLNNPELA 120
Query: 140 LKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS 199
LKF + SRVNL+L HSF+TY+ ++RSL EMG H+S + V+D M DGH P++ ++ F VS
Sbjct: 121 LKFFQLSRVNLNLCHSFRTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVS 180
Query: 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQP 259
S AGK + A+ + V S +YN LLN LV+ N DEAV F+E L+
Sbjct: 181 SATDAGKFNIARTWVDG-----VEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPF 235
Query: 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELL 319
D+ +FNILI+GL RIG+V KAFE F +M FGCSPD++TYNTLI+G CRVNEV RGH+LL
Sbjct: 236 DSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLL 295
Query: 320 KEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379
KE+ K++ SPDVVTYTS+ISGYCKLGKM+KA+ ++N M S GIKP+A TFN+LI+GFGK
Sbjct: 296 KELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGK 355
Query: 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT 439
VG+MVSAE M E ML G PD++TF+SLIDG+CR G++ + LKL E+ +NLSPN YT
Sbjct: 356 VGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYT 415
Query: 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499
F IL NALCKENRL++AR FL+ LKW +V +PFMYNPVIDGFCKAGNVDEANVI+AEME
Sbjct: 416 FAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEME 475
Query: 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPN 559
EKRCKPDK+T+TILIIGHCMKGR+ EAISIFN+ML GCAPD IT+ SLISCLLK GMPN
Sbjct: 476 EKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPN 535
Query: 560 EAFRIMQRASEDQNLQLPSWKKAVPLRTNTDIPVA 594
EA+RIMQ ASED NL L S K+ VPLRTNTDIPVA
Sbjct: 536 EAYRIMQIASEDFNLGLKSLKRNVPLRTNTDIPVA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/552 (61%), Positives = 422/552 (76%), Gaps = 7/552 (1%)
Query: 46 MTLLFFTVRPSRVRASTIAAIAHFHGLANGGSR--PFDEKEVNYRCSNEFWFVKVVCTLL 103
MTLLFF+ R R+R S + IA F+ LA+ SR PF ++E+ +E W VKVVCTL
Sbjct: 1 MTLLFFSSRAYRLRTSNFS-IAQFYSLADSVSRARPFCDREIIRH--SEAWLVKVVCTLF 57
Query: 104 LRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVM 163
RS L + C YL L+P + EVIKR +P LGLKF EFSR +LS+NH+F TY+L+M
Sbjct: 58 FRSHSL-NACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLM 116
Query: 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT 223
R+LC++GL+DS ++VFD MRSDG LP+S ++E VSS R GK D+AK L++ +
Sbjct: 117 RNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIK 176
Query: 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEF 283
+S F+YN+LLN LVKQN DEAV +F+E+ Y PD ++FNILI+GL RIGE+ KAFEF
Sbjct: 177 VSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEF 236
Query: 284 FYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC 343
F +MG+FGC PDIV+YNTLI+G CRVNE+++GH+LLKE SPDV+TYTS+ISGYC
Sbjct: 237 FQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYC 296
Query: 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403
KLG M A+ +++EM S GIKP+ TFNVLIDGFGKVGNM SA M E+ML G LPDVV
Sbjct: 297 KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVV 356
Query: 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463
TF+SLIDGYCR G++NQGLKL +EMK +NLSPNVYT+ +LINALCKENR+ +AR FL+ L
Sbjct: 357 TFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416
Query: 464 KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523
K +++VPKPF+YNPVIDGFCKAG VDEAN IVAEM+EK+C+PDK+TFTILIIG+CMKGRM
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRM 476
Query: 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAV 583
VEAIS F KM+ I C PD+IT+NSLISCLLK GMPNEA +I Q A + NL L S +
Sbjct: 477 VEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPL 536
Query: 584 PLRTNTDIPVAA 595
R ++ +PVA
Sbjct: 537 T-RKSSRVPVAV 547
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/547 (60%), Positives = 407/547 (74%), Gaps = 37/547 (6%)
Query: 49 LFFTVRPSRVRASTIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSY 108
LF P RVRASTIA IA FHG GGSR + +++
Sbjct: 3 LFSLTGPFRVRASTIA-IARFHGQTQGGSRFYPDRQ------------------------ 37
Query: 109 LSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCE 168
L+PL + EVIKR +NPK+G KFLEFSR+NL++NH + TYNL+MRSLC+
Sbjct: 38 ------------LTPLIAFEVIKRFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQ 85
Query: 169 MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFM 228
MG HD V +VFDYM SDGHLP+S ++ F V+ +A D K LL++ + EV +++F+
Sbjct: 86 MGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFV 145
Query: 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288
YN+LL+ LVKQN EA+Y+FKEY + S PDTWTFNILI+GL R+G V +AFE F DM
Sbjct: 146 YNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDME 205
Query: 289 SFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348
SFGC PD+VTYNTLI+GLC+ NEV RG EL KE++ +S+ SPD+VTYTS+ISG+CK GKM
Sbjct: 206 SFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKM 265
Query: 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408
+A+ ++ EM GI+P+ +TFNVLIDGFGK+GN+ AE M +M F DVVTF+SL
Sbjct: 266 KEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSL 325
Query: 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468
IDGYCR GQ+N GLK + MK +N+SP VYT+ +LINALCKENRLN+AR FL Q+K + +
Sbjct: 326 IDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSI 385
Query: 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528
+PKPFMYNPVIDGFCKAGNVDE NVI+ EMEEKRC PDKVTFTILIIGHC+KGRM EAI+
Sbjct: 386 IPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAIN 445
Query: 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTN 588
IFN+ML CAPD+ITVNSLISCLLK GMPNEA+RI + A ED+NL L S++KA+PLRTN
Sbjct: 446 IFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALEDRNLGLSSFEKAIPLRTN 505
Query: 589 TDIPVAA 595
TDIPVA
Sbjct: 506 TDIPVAV 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/552 (60%), Positives = 421/552 (76%), Gaps = 7/552 (1%)
Query: 46 MTLLFFTVRPSRVRASTIAAIAHFHGLANGGSR--PFDEKEVNYRCSNEFWFVKVVCTLL 103
MTLLFF+ R R+R S + IA F+ LA+ SR PF ++E+ +E W VKVVCTL
Sbjct: 1 MTLLFFSSRAYRLRTSNFS-IAQFYSLADSVSRARPFCDREIIRH--SEAWLVKVVCTLF 57
Query: 104 LRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVM 163
RS L + C YL L+P + EVIKR +P LGLKF EFSR +LS+NH+F TY+L+M
Sbjct: 58 FRSHSL-NACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLM 116
Query: 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT 223
R+LC++GL+DS ++VFD MRSDG LP+S ++E VSS R GK D+AK L++ +
Sbjct: 117 RNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIK 176
Query: 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEF 283
+S F+YN+LLN LVKQN DEAV +F+E+ Y PD ++FNILI+GL RIGE+ KAFEF
Sbjct: 177 VSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEF 236
Query: 284 FYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC 343
F +MG+FGC PDIV+YNTLI+G CRVNE+++GH+LLKE SPDV+TYTS+ISGYC
Sbjct: 237 FQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYC 296
Query: 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403
KLG M A+ +++EM S GIKP+ TFNVLIDGFGKVGNM SA M E+ML G LPDVV
Sbjct: 297 KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVV 356
Query: 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463
TF+SLIDGYCR G++NQGLKL +EMK +NLSPNVYT+ +LINALCKENR+ +AR FL+ L
Sbjct: 357 TFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416
Query: 464 KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523
K +++VPKPF+YNPVIDGFCKAG VDEAN IVAEM+EK+C+PDK+TFTILIIG+CMKGRM
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRM 476
Query: 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAV 583
VEAIS F KM+ I C PD+IT+NSLISCLLK GMPNEA +I Q A + NL L S +
Sbjct: 477 VEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPL 536
Query: 584 PLRTNTDIPVAA 595
R ++ +P A
Sbjct: 537 T-RKSSRVPAAV 547
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/533 (60%), Positives = 413/533 (77%), Gaps = 4/533 (0%)
Query: 66 IAHFHGLANGGS-RPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCEKLS-P 123
+AHFH GG PF +KEV + + E WFVKV+ L +RS T YL EKL+ P
Sbjct: 1 MAHFHDYTKGGGFHPFSDKEVIVK-NQEAWFVKVIAILFVRSHCSDATSLGYLSEKLNDP 59
Query: 124 LNSLEVIKRLDN-PKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYM 182
L + EVIKRL+N P++GLKF+EF R+N SL H F TY L++RSLC+MGLHD V++V YM
Sbjct: 60 LVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCFSTYELLIRSLCQMGLHDLVEMVIGYM 119
Query: 183 RSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242
RSDGHL +S ++ F V+S +AGK D AK L+ + + E +S+F+YN LLN LVK
Sbjct: 120 RSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKV 179
Query: 243 DEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTL 302
EA+++FKE +S P+TWTFNILI+GL R+GEV+K FE F M SFGC PD+VTYNTL
Sbjct: 180 HEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTL 239
Query: 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG 362
ISGLC+ NE+ R +LLKEV+ +++ SPDV+TYTS+ISG+ KLGK++ A+ ++ EM G
Sbjct: 240 ISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSG 299
Query: 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422
I+P+ VTFNVLIDGFGK+GNMV+AE M E+M S+ +PDVVTF+SLIDGYCR G + GL
Sbjct: 300 IEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGL 359
Query: 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482
K+ D MK +N+SPN+YT++++INALCK+NR+++AR L+QLK +D+ PKPF+YNPVIDGF
Sbjct: 360 KVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGF 419
Query: 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD 542
CKAGNVDEANVIV EMEEKRC+PDKVTFTILIIGHCMKGRMVEA+ IF KML IGCAPD+
Sbjct: 420 CKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDN 479
Query: 543 ITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTNTDIPVAA 595
IT++SL++CLLK G P+EAF I+Q ASED NL S +K P+R TDI VAA
Sbjct: 480 ITISSLVACLLKAGKPSEAFHIVQTASEDLNLSFSSLRKTFPMRVKTDISVAA 532
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana] gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/535 (53%), Positives = 367/535 (68%), Gaps = 11/535 (2%)
Query: 58 VRASTIAAIAHFHGLANGGS--RPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115
+R + AIAHFH ++GG+ RP E W VK+V TL + SD C
Sbjct: 2 IRTTFATAIAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFC 61
Query: 116 YLCEKLSPLNSLEVIKRLD-NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDS 174
YL + L+P S EV+K+LD NP +G +F EFSR L++ HSF TYNL+ RSLC+ GLHD
Sbjct: 62 YLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDL 121
Query: 175 VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234
+F+ M+SDG PN+ ++ F VSS GK A LL Q EV + NSLLN
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSLLN 179
Query: 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294
LVK + ++A+ +F E+ R S DT TFNILI+GL +G+ +KA E M FGC P
Sbjct: 180 TLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEP 239
Query: 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354
DIVTYNTLI G C+ NE+ + E+ K+VK S SPDVVTYTS+ISGYCK GKM +A+ +
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299
Query: 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414
++M GI P+ VTFNVL+DG+ K G M++AE +R +M+SFG PDVVTF+SLIDGYCR
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359
Query: 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474
GQ++QG +L +EM + + PN +T++ILINALC ENRL AR L QL D++P+PFM
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534
YNPVIDGFCKAG V+EANVIV EME+K+CKPDK+TFTILIIGHCMKGRM EA+SIF+KM+
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479
Query: 535 RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTNT 589
IGC+PD ITV+SL+SCLLK GM EA+ + Q A + Q+ VPL T T
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQS------NNVVPLETKT 528
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 285/530 (53%), Positives = 365/530 (68%), Gaps = 7/530 (1%)
Query: 58 VRASTIAAIAHFHGLANGGS--RPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115
+R + AIAHFH ++GG+ RP E W VK+V TL + SD C
Sbjct: 2 IRTTFATAIAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFC 61
Query: 116 YLCEKLSPLNSLEVIKRLD-NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDS 174
YL + L+P S EV+K+LD NP +G +F EFSR L++ HSF TYNL+ RSLC+ GLHD
Sbjct: 62 YLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDL 121
Query: 175 VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234
+F+ M+SDG PN+ ++ F VSS GK A LL Q EV + NSLLN
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSLLN 179
Query: 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294
LVK + ++A+ +F E+ R S DT TFNILI+GL +G+ +KA E M FGC P
Sbjct: 180 TLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEP 239
Query: 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354
DIVTYNTLI G C+ NE+ + E+ K+VK S SPDVVTYTS+ISGYCK GKM +A+ +
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299
Query: 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414
++M GI P+ VTFNVL+DG+ K G M++AE +R +M+SFG PDVVTF+SLIDGYCR
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359
Query: 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474
GQ++QG +L +EM + + PN +T++ILINALC ENRL AR L QL D++P+PFM
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534
YNPVIDGFCKAG V+EANVIV EME+K+CKPDK+TFTILIIGHCMKGRM EA+SIF+KM+
Sbjct: 420 YNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479
Query: 535 RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQ--RASEDQNLQLPSWKKA 582
IGC+PD ITV+SL+SCLLK GM EA+ + Q R + N+ P K A
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPPETKTA 529
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/542 (53%), Positives = 370/542 (68%), Gaps = 12/542 (2%)
Query: 58 VRASTIAAIAHFHGLANGGS--RPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115
+R + AIAHFH ++GG+ RP E W VK+V TL + SD C
Sbjct: 2 IRTTFATAIAHFHTHSHGGAQARPIQNNTREKIHCPEAWLVKIVSTLFVYRVPDSDLCFC 61
Query: 116 YLCEKLSPLNSLEVIKRLD-NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDS 174
YL + L+P S EV+K+LD NP +G +F EFSR L++ HSF TYNL+ RSLC+ G+HD
Sbjct: 62 YLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDL 121
Query: 175 VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234
+F+ M+SDG PNS ++ F VSS GK A LL Q EV + NSLLN
Sbjct: 122 AGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQ--SYEVEGCCMVVNSLLN 179
Query: 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294
LVK + ++A+ +F+E+ R S DT TFNILI+GL +G+ +KA E M FGC P
Sbjct: 180 TLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLP 239
Query: 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354
DIVTYNTLI G C+ NE+ + +E+ +VK S SPDVVTYTS+ISGYCK GKM +A+ +
Sbjct: 240 DIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVL 299
Query: 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414
++M GI P+ VTFNVL+DG+ K G M +AE +R +M+SFG PDVVTF+SLIDGYCR
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCR 359
Query: 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474
GQ+NQG +L +EM + + PN +T++ILINALCKENRL AR L QL D++P+PFM
Sbjct: 360 VGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFM 419
Query: 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534
YNPVIDGFCKAG V+EA VIV EME+K+CKPDK+TFTILIIGHCMKGRM EA+SIF+KM+
Sbjct: 420 YNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMV 479
Query: 535 RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTNT-DIPV 593
IGC+PD ITV+SL+SCLLK GM EA+ + Q A + Q PL T T ++ +
Sbjct: 480 AIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQ------INDGAPLETKTANVTL 533
Query: 594 AA 595
AA
Sbjct: 534 AA 535
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 288/556 (51%), Positives = 378/556 (67%), Gaps = 22/556 (3%)
Query: 41 GVGLPMTLLFFT-VRPSRVRASTIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVV 99
GV MT FFT +R S R T A A GL + + WFVK+V
Sbjct: 7 GVEKLMTFSFFTAIRASHYRTLT-QATASDKGLI--------------ITTPDSWFVKIV 51
Query: 100 CTLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTY 159
TL L S+ L D Y E L+P + LEV+KR +NP LG KF F+R LS++HSF TY
Sbjct: 52 STLFLCSNSLDDRFLGYFREHLTPSHVLEVVKRFNNPNLGFKFFRFTRERLSMSHSFWTY 111
Query: 160 NLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRP 219
N+++RSLC+ GLH+S ++++D MRSDG LP+S ++ F VSS A + D +K LL++ +
Sbjct: 112 NMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQC 171
Query: 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK 279
V + +YN+ LN L+K N D+A+ +F+E R +S D +TFNILI+GL G+V +
Sbjct: 172 SGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDE 231
Query: 280 AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVI 339
AFE DMGSFGCSPDIVTYN L+ GLCR+++V R +LL+EV K EF+P+VV+YT+VI
Sbjct: 232 AFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVI 291
Query: 340 SGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYL 399
SGYC+L KMD+A+ ++ EM G KP+ TF+ L+DGF K G+M SA M +++L G
Sbjct: 292 SGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCA 351
Query: 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRF 459
P+V+T +SLI+GYCR G +N GL L EM +N+ N+YT+++LI+ALCK NRL +AR
Sbjct: 352 PNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNL 411
Query: 460 LKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519
L+ LK +D+VP F+YNPVIDG+CK+GN+DEAN IVAEMEEK CKPDK+TFTILIIGHCM
Sbjct: 412 LRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEK-CKPDKLTFTILIIGHCM 470
Query: 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579
KGR EAI IF KML GC PDDIT+ +L SCLLK GMP EA RI + E+Q L
Sbjct: 471 KGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKETLFENQESIL--- 527
Query: 580 KKAVPLRTNTD--IPV 593
KK+ N D IPV
Sbjct: 528 KKSYHESMNADKKIPV 543
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/504 (51%), Positives = 353/504 (70%), Gaps = 1/504 (0%)
Query: 92 EFWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRVNLS 151
E WFVK+ CT+ +RS+ L D Y + L+P EV+ RL P LG KF+EF R L
Sbjct: 8 EAWFVKIACTVFVRSNSL-DPFVGYFSKHLTPSLVYEVVNRLHIPNLGFKFVEFCRHKLH 66
Query: 152 LNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211
++HS+ TY+L++RSLC LH + +VV+D+MR DG +P++ ++ F V S G+ D ++
Sbjct: 67 MSHSYLTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSR 126
Query: 212 GLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271
LL+ + V ++ +YN L N L++QN +AV +F+E RL +P T+T NIL++GL
Sbjct: 127 ELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGL 186
Query: 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD 331
R GE+ +AF D+ SFGC PD++TYNTLI GLCR+NEV R LLKEV EF+PD
Sbjct: 187 CRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPD 246
Query: 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391
VV+YT++ISGYCK KM++ ++ EM G P+ TFN LI GFGK+G+M SA + E
Sbjct: 247 VVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYE 306
Query: 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451
+ML G +PDV TF+SLI+GY R GQ++Q + + +M KN+ +YTF++L++ LC N
Sbjct: 307 KMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNN 366
Query: 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT 511
RL+ AR L+ L +D+VP+PF+YNPVIDG+CK+GNVDEAN IVAEME RCKPDK+TFT
Sbjct: 367 RLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFT 426
Query: 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571
ILIIGHCMKGRM EAI IF+KML +GCAPD+ITVN+L SCLLK GMP EA R+ + +++
Sbjct: 427 ILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARVKKVLAQN 486
Query: 572 QNLQLPSWKKAVPLRTNTDIPVAA 595
L + S KK+ TN IPVA
Sbjct: 487 LTLGITSSKKSYHETTNESIPVAV 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 595 | ||||||
| TAIR|locus:2064707 | 536 | AT2G06000 "AT2G06000" [Arabido | 0.877 | 0.973 | 0.540 | 1.2e-145 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.794 | 0.633 | 0.286 | 1.4e-55 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.682 | 0.556 | 0.308 | 2.1e-54 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.699 | 0.458 | 0.294 | 1.9e-53 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.714 | 0.563 | 0.307 | 3e-53 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.589 | 0.579 | 0.303 | 3.5e-52 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.687 | 0.560 | 0.294 | 9.2e-52 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.678 | 0.671 | 0.287 | 1.2e-51 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.678 | 0.441 | 0.329 | 1.5e-51 | |
| TAIR|locus:2132937 | 704 | RPF5 "AT4G28010" [Arabidopsis | 0.731 | 0.617 | 0.294 | 3.1e-51 |
| TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 290/537 (54%), Positives = 372/537 (69%)
Query: 58 VRASTIAAIAHFHGLANGGS--RPFDE--KEVNYRCSNEFWFVKVVCTLLLRSSYLSDTC 113
+R + AIAHFH ++GG+ RP +EV + C E W VK+V TL + SD C
Sbjct: 2 IRTTFATAIAHFHTHSHGGAQARPLQNNTREVIH-CP-EAWLVKIVSTLFVYRVPDSDLC 59
Query: 114 ARYLCEKLSPLNSLEVIKRLDN-PKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLH 172
YL + L+P S EV+K+LDN P +G +F EFSR L++ HSF TYNL+ RSLC+ GLH
Sbjct: 60 FCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLH 119
Query: 173 DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232
D +F+ M+SDG PN+ ++ F VSS GK A LL Q EV + NSL
Sbjct: 120 DLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSL 177
Query: 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292
LN LVK + ++A+ +F E+ R S DT TFNILI+GL +G+ +KA E M FGC
Sbjct: 178 LNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGC 237
Query: 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352
PDIVTYNTLI G C+ NE+ + E+ K+VK S SPDVVTYTS+ISGYCK GKM +A+
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297
Query: 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY 412
+ ++M GI P+ VTFNVL+DG+ K G M++AE +R +M+SFG PDVVTF+SLIDGY
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357
Query: 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP 472
CR GQ++QG +L +EM + + PN +T++ILINALC ENRL AR L QL D++P+P
Sbjct: 358 CRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417
Query: 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532
FMYNPVIDGFCKAG V+EANVIV EME+K+CKPDK+TFTILIIGHCMKGRM EA+SIF+K
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477
Query: 533 MLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTNT 589
M+ IGC+PD ITV+SL+SCLLK GM EA+ + Q A + Q+ VPL T T
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQS------NNVVPLETKT 528
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 139/485 (28%), Positives = 243/485 (50%)
Query: 83 KEVNYRCSNEFWFVKVVC-TLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRLDNPKLGLK 141
K +N+ ++F+ ++ C TL + + + A+ L E ++ K LD+ L
Sbjct: 67 KFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAA-------KTLDDEYASLV 119
Query: 142 FLEFSRV-NLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSS 200
F +L + S ++LV++S + L D + ++ G +P + +
Sbjct: 120 FKSLQETYDLCYSTS-SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDA 178
Query: 201 CIRAGK-CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQP 259
IR+ + A+ + + +V+ + F YN L+ N D A+ +F + P
Sbjct: 179 TIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLP 238
Query: 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELL 319
+ T+N LI G ++ ++ F+ M G P++++YN +I+GLCR + +L
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVL 298
Query: 320 KEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379
E+ + +S D VTY ++I GYCK G +A ++ EM G+ PS +T+ LI K
Sbjct: 299 TEMNRRG-YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT 439
GNM A ++M G P+ T+++L+DG+ + G +N+ ++ EM SP+V T
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499
+ LIN C ++ DA L+ +K L P Y+ V+ GFC++ +VDEA + EM
Sbjct: 418 YNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Query: 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPN 559
EK KPD +T++ LI G C + R EA ++ +MLR+G PD+ T +LI+ G
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLE 537
Query: 560 EAFRI 564
+A ++
Sbjct: 538 KALQL 542
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 126/409 (30%), Positives = 206/409 (50%)
Query: 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217
TYN V+ LC+ G ++ + VF M G P+S + + G + + S
Sbjct: 307 TYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM 366
Query: 218 RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEV 277
R +V ++S+++ + N D+A+ F PD + ILIQG R G +
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426
Query: 278 KKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337
A +M GC+ D+VTYNT++ GLC+ + +L E+ ++ F PD T T
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF-PDSYTLTI 485
Query: 338 VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397
+I G+CKLG + A ++ +M I+ VT+N L+DGFGKVG++ +A+ + M+S
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457
LP +++S L++ C G L + ++ DEM KN+ P V +I C+ +D
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR--CKPDKVTFTILII 515
FL+++ VP YN +I GF + N+ +A +V +MEE++ PD T+ ++
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665
Query: 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564
G C + +M EA + KM+ G PD T +I+ + EAFRI
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI 714
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 124/421 (29%), Positives = 208/421 (49%)
Query: 148 VNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207
V++ + Y V+RSLCE+ + + +M + G N + + K
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278
Query: 208 DAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL 267
A G+ ++ Y +L+ L K + + M E L P + L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338
Query: 268 IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE 327
++GL + G++++A + FG SP++ YN LI LC+ + ELL + K
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA-ELLFDRMGKIG 397
Query: 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE 387
P+ VTY+ +I +C+ GK+D A EM G+K S +N LI+G K G++ +AE
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL 447
M++ P VVT++SL+ GYC G++N+ L+L EM GK ++P++YTFT L++ L
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 448 CKENRLNDARRFLKQL-KWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD 506
+ + DA + ++ +WN + P YN +I+G+C+ G++ +A + EM EK PD
Sbjct: 518 FRAGLIRDAVKLFNEMAEWN-VKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Query: 507 KVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAPDDITVNSLISCLLKGGMPNEAFRIM 565
++ LI G C+ G+ EA +F L G C ++I L+ + G EA +
Sbjct: 577 TYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVC 635
Query: 566 Q 566
Q
Sbjct: 636 Q 636
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 133/432 (30%), Positives = 218/432 (50%)
Query: 140 LKFLEFSRVNLS---LNHSFKTYNLVMRSLCEMG-LHDSVQVVFDYMRSDGHLPNSPMIE 195
LK +E S +S + T+N+++++LC L ++ ++ D M S G +P+
Sbjct: 170 LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLED-MPSYGLVPDEKTFT 228
Query: 196 FFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255
+ I G D A + Q + S N +++ K+ ++A+ +E
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Query: 256 YSQ-PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314
PD +TFN L+ GL + G VK A E M G PD+ TYN++ISGLC++ EV
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 315 GHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLI 374
E+L ++ + SP+ VTY ++IS CK ++++AT + + S GI P TFN LI
Sbjct: 349 AVEVLDQM-ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Query: 375 DGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS 434
G N A + E M S G PD T++ LID C G+L++ L + +M+ +
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVI 494
+V T+ LI+ CK N+ +A +++ + + YN +IDG CK+ V++A +
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 495 VAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554
+ +M + KPDK T+ L+ C G + +A I M GC PD +T +LIS L K
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Query: 555 GGMPNEAFRIMQ 566
G A ++++
Sbjct: 588 AGRVEVASKLLR 599
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 108/356 (30%), Positives = 205/356 (57%)
Query: 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEF 283
+S L+ AL+K+N + + Y++KE R QP+ +TFN++I L + G++ KA +
Sbjct: 186 LSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDV 245
Query: 284 FYDMGSFGCSPDIVTYNTLISGLCRVN---EVARGHELLKEVKFKSEFSPDVVTYTSVIS 340
DM +GCSP++V+YNTLI G C++ ++ + +LKE+ +++ SP++ T+ +I
Sbjct: 246 MEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM-VENDVSPNLTTFNILID 304
Query: 341 GYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP 400
G+ K + + ++ EM +KP+ +++N LI+G G + A MR++M+S G P
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364
Query: 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFL 460
+++T+++LI+G+C+N L + L + +KG+ P + +LI+A CK +++D
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALK 424
Query: 461 KQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520
++++ +VP YN +I G C+ GN++ A + ++ K PD VTF IL+ G+C K
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRK 483
Query: 521 GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576
G +A + +M ++G P +T N ++ K G A + + +++ L++
Sbjct: 484 GESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM 539
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 123/417 (29%), Positives = 217/417 (52%)
Query: 157 KTYNLVMRSLCEMG-LHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLS 215
+T+N V+ LC+ ++++ ++V + M G P+ + ++ + G+ DAAK L
Sbjct: 288 ETFNDVILGLCKFDRINEAAKMV-NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFY 346
Query: 216 QFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS-QPDTWTFNILIQGLSRI 274
+ E+ + +N+L++ V D+A + + Y PD T+N LI G +
Sbjct: 347 RIPKPEIVI----FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKE 402
Query: 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT 334
G V A E +DM + GC P++ +Y L+ G C++ ++ + +L E+ P+ V
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG-LKPNTVG 461
Query: 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERML 394
+ +IS +CK ++ +A I+ EM G KP TFN LI G +V + A ++ M+
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI 521
Query: 395 SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN 454
S G + + VT+++LI+ + R G++ + KL +EM + + T+ LI LC+ ++
Sbjct: 522 SEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVD 581
Query: 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514
AR +++ + P N +I+G C++G V+EA EM + PD VTF LI
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 641
Query: 515 IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571
G C GR+ + +++F K+ G PD +T N+L+S L KGG +A ++ ED
Sbjct: 642 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED 698
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 117/407 (28%), Positives = 209/407 (51%)
Query: 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218
YN ++ C+M D V D MRS P++ + S GK D A +L+Q
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 219 PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278
+ Y L+ A + + DEA+ + E +PD +T+N +I+G+ + G V
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 279 KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV 338
+AFE ++ GC PD+++YN L+ L + G +L+ ++ F + P+VVTY+ +
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM-FSEKCDPNVVTYSIL 339
Query: 339 ISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNM-VSAEYMRERMLSFG 397
I+ C+ GK+++A + M G+ P A +++ LI F + G + V+ E++ E M+S G
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL-ETMISDG 398
Query: 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457
LPD+V +++++ C+NG+ +Q L++ ++ SPN ++ + +AL A
Sbjct: 399 CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRAL 458
Query: 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517
+ ++ N + P YN +I C+ G VDEA ++ +M P VT+ I+++G
Sbjct: 459 HMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Query: 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564
C R+ +AI++ M+ GC P++ T LI + G EA +
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 138/419 (32%), Positives = 214/419 (51%)
Query: 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF 217
TYN ++ C++G +V+ Y+ P +FF + + G C K L S F
Sbjct: 220 TYNKMVNGYCKLG---NVEEANQYVSKIVEAGLDP--DFFTYTSLIMGYCQR-KDLDSAF 273
Query: 218 RP-GEVTM-----STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271
+ E+ + + Y L++ L DEA+ +F + P T+ +LI+ L
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD 331
+A +M G P+I TY LI LC + + ELL ++ K P+
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG-LMPN 392
Query: 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391
V+TY ++I+GYCK G ++ A + M S + P+ T+N LI G+ K N+ A +
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLN 451
Query: 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451
+ML LPDVVT++SLIDG CR+G + +L M + L P+ +T+T +I++LCK
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511
Query: 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT 511
R+ +A L+ + P MY +IDG+CKAG VDEA++++ +M K C P+ +TF
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571
Query: 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAF-RIMQRAS 569
LI G C G++ EA + KM++IG P T LI LLK G + A+ R Q S
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630
|
|
| TAIR|locus:2132937 RPF5 "AT4G28010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 130/442 (29%), Positives = 225/442 (50%)
Query: 135 NPKLGLKFLEFSR-VNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPM 193
NP+L F + V+ + +F NL M L H+ + M N
Sbjct: 51 NPQLKNAVSVFQQAVDSGSSLAFAGNNL-MAKLVRSRNHELAFSFYRKMLETDTFINFVS 109
Query: 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF 253
+ + ++ K A G+L+ + + +N LL L + +AV + +E
Sbjct: 110 LSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMR 169
Query: 254 RLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313
R PD +++N +I+G E++KA E +M GCS +VT+ LI C+ ++
Sbjct: 170 RNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMD 229
Query: 314 RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373
LKE+KF D+V YTS+I G+C G++D+ +++E+ G P A+T+N L
Sbjct: 230 EAMGFLKEMKFMG-LEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTL 288
Query: 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL 433
I GF K+G + A + E M+ G P+V T++ LIDG C G+ + L+L + M K+
Sbjct: 289 IRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE 348
Query: 434 SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493
PN T+ I+IN LCK+ + DA ++ +K P YN ++ G C G++DEA+
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408
Query: 494 IVAEM--EEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML-RIGCAPDDITVNSLIS 550
++ M + PD +++ LI G C + R+ +A+ I++ ++ ++G A D +T N L++
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG-AGDRVTTNILLN 467
Query: 551 CLLKGGMPNEAFRIMQRASEDQ 572
LK G N+A + ++ S+ +
Sbjct: 468 STLKAGDVNKAMELWKQISDSK 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUE9 | PP149_ARATH | No assigned EC number | 0.5364 | 0.8806 | 0.9776 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 595 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-30
Identities = 81/369 (21%), Positives = 161/369 (43%), Gaps = 4/369 (1%)
Query: 188 LPNSPMIEF--FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEA 245
+ N + F +S C + D A +L + + +Y +L++ K D
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 246 VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305
+F E + + TF LI G +R G+V KAF + M S PD V +N LIS
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 306 LCRVNEVARGHELLKEVKFKSE-FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIK 364
+ V R ++L E+K ++ PD +T +++ G++D+A +Y ++ IK
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKL 424
+ + + ++ + G+ A + + M G PD V FS+L+D G L++ ++
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 425 CDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484
+ + + + +++ L+ A A + +K L P N +I C+
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 485 AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544
+ +A +++EM+ P+ +T++IL++ K + + ++ G P+ +
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 545 VNSLIS-CL 552
+ CL
Sbjct: 792 CRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-24
Identities = 88/375 (23%), Positives = 160/375 (42%), Gaps = 18/375 (4%)
Query: 200 SCIRAGKCDAAKGLLSQF-RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ 258
+R G+ LL + G + M + A KQ EA K L
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK----LIRN 434
Query: 259 PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318
P TFN+L+ + ++ A + G D Y TLIS + +V E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFG 378
E+ + +V T+ ++I G + G++ KA G Y M S +KP V FN LI G
Sbjct: 495 FHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 379 KVGNM-----VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL 433
+ G + V AE E + PD +T +L+ GQ+++ ++ + N+
Sbjct: 554 QSGAVDRAFDVLAEMKAE---THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 434 --SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491
+P VY TI +N+ ++ + A +K + P ++ ++D AG++D+A
Sbjct: 611 KGTPEVY--TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551
I+ + ++ K V+++ L+ +A+ ++ + I P T+N+LI+
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 552 LLKGGMPNEAFRIMQ 566
L +G +A ++
Sbjct: 729 LCEGNQLPKALEVLS 743
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-21
Identities = 81/328 (24%), Positives = 137/328 (41%), Gaps = 58/328 (17%)
Query: 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT 334
VK+AF F + + P + T+N L+S ++ +L+ V+ ++ D
Sbjct: 420 RAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKADCKL 474
Query: 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERML 394
YT++IS K GK+D +++EM + G++ + TF LIDG + G + A M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 395 SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG--KNLSPNVYTFTILINALCKENR 452
S PD V F++LI ++G +++ + EMK + P+ T L+ A C
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA-C---- 589
Query: 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTI 512
AG VD A + + E K +TI
Sbjct: 590 ------------------------------ANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572
+ KG A+SI++ M + G PD++ ++L+ G ++AF I+Q A Q
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQ 678
Query: 573 NLQL---------------PSWKKAVPL 585
++L +WKKA+ L
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALEL 706
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 2e-19
Identities = 29/50 (58%), Positives = 42/50 (84%)
Query: 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449
PDVVT+++LIDGYC+ G++ + LKL +EMK + + PNVYT++ILI+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 78/380 (20%), Positives = 152/380 (40%), Gaps = 54/380 (14%)
Query: 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288
+N++++ + E + +F L PD T +I +G+ + E +
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 289 SFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348
G + D+ N+LI + ++ ++ K D V++T++ISGY K G
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-----DAVSWTAMISGYEKNGLP 370
Query: 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408
DKA Y M + P +T ++ +G++ + E G + VV ++L
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468
I+ Y + +++ L++ + K+ V ++T +I L NR +A F +Q+ L
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRCFEALIFFRQML---L 483
Query: 469 VPKP-------------------------------------FMYNPVIDGFCKAGNVDEA 491
KP F+ N ++D + + G ++
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN-- 541
Query: 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551
A + + D V++ IL+ G+ G+ A+ +FN+M+ G PD++T SL+
Sbjct: 542 ---YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 552 LLKGGMPNEAFRIMQRASED 571
+ GM + E
Sbjct: 599 CSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 74/376 (19%)
Query: 223 TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282
+ ST NS L AL ++A+ + + L D + L R+ E K+A
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----RLCEWKRA-- 101
Query: 283 FFYDMGSFGCSPDIVTY--------NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT 334
+ GS CS + ++ N ++S R E+ + ++ + FS +V+
Sbjct: 102 --VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL- 158
Query: 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTF------------------------ 370
+ GY K G D+A +Y+ M G++P TF
Sbjct: 159 ----VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 371 -----------NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLN 419
N LI + K G++VSA + +RM D ++++++I GY NG+
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECL 270
Query: 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPF-----M 474
+GL+L M+ ++ P++ T T +I+A C+ L D R +++ +V F +
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISA-CE--LLGD-ERLGREMH-GYVVKTGFAVDVSV 325
Query: 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534
N +I + G+ EA + + ME K D V++T +I G+ G +A+ + M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 535 RIGCAPDDITVNSLIS 550
+ +PD+IT+ S++S
Sbjct: 382 QDNVSPDEITIASVLS 397
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 6e-18
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379
PDVVTY ++I GYCK GK+++A ++NEM GIKP+ T+++LIDG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 8e-16
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 259 PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308
PD T+N LI G + G+V++A + F +M G P++ TY+ LI GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 294 PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK 344
PD+VTYNTLI G C+ +V +L E+K K P+V TY+ +I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 20/308 (6%)
Query: 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELL 319
D ++N +I G GE + E F+ M PD++T ++IS + + G E+
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 320 KEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379
V K+ F+ DV S+I Y LG +A +++ M + AV++ +I G+ K
Sbjct: 312 GYV-VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366
Query: 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT 439
G A M PD +T +S++ G L+ G+KL + + K L V
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499
LI K ++ A + D++ + +I G EA + +M
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVIS----WTSIIAGLRLNNRCFEALIFFRQML 482
Query: 500 EKRCKPDKVTFTILI-----IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554
KP+ VT + IG M G+ + A +LR G D N+L+ ++
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHA-----HVLRTGIGFDGFLPNALLDLYVR 536
Query: 555 GGMPNEAF 562
G N A+
Sbjct: 537 CGRMNYAW 544
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 13/303 (4%)
Query: 163 MRSLCEM-GLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE 221
M S E GL D + M D P+ I +S+C G D L
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 222 VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF 281
+ + N+L+ K D+A+ E F + D ++ +I GL +A
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKAL----EVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 282 EFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISG 341
FF M P+ VT +S R+ + G E+ V ++ D +++
Sbjct: 476 IFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHV-LRTGIGFDGFLPNALLDL 533
Query: 342 YCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD 401
Y + G+M+ A +N+ NS + V++N+L+ G+ G A + RM+ G PD
Sbjct: 534 YVRCGRMNYA---WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGK-NLSPNVYTFTILINALCKENRLNDARRFL 460
VTF SL+ R+G + QGL+ M+ K +++PN+ + +++ L + +L +A F+
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 461 KQL 463
++
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 82/386 (21%), Positives = 156/386 (40%), Gaps = 64/386 (16%)
Query: 198 VSSCIRAGKCDAAKGLL-----SQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEY 252
V +CI K + S F P + +M N +L VK +A +F E
Sbjct: 130 VEACIALKSIRCVKAVYWHVESSGFEPDQ-----YMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 253 FRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEV 312
+ + ++ +I GL G ++AF F +M G + T+ ++ +
Sbjct: 185 ----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY-NEMNSCGIKPSAVTFN 371
G +L +C + K TG+ + SC
Sbjct: 241 RAGQQL-----------------------HCCVLK----TGVVGDTFVSCA--------- 264
Query: 372 VLIDGFGKVGNMVSAEYMRERMLSFGYLPD--VVTFSSLIDGYCRNGQLNQGLKLCDEMK 429
LID + K G++ A + + M P+ V ++S++ GY +G + L L EM+
Sbjct: 265 -LIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 430 GKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD 489
+S + +TF+I+I + L A++ L ++D + K G ++
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549
+A + M K + +++ LI G+ GR +A+ +F +M+ G AP+ +T +++
Sbjct: 378 DARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 550 SCLLKGGMPNEAFRIMQRASEDQNLQ 575
S G+ + + I Q SE+ ++
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 6e-13
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518
P YN +IDG+CK G V+EA + EM+++ KP+ T++ILI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 8e-13
Identities = 78/408 (19%), Positives = 163/408 (39%), Gaps = 20/408 (4%)
Query: 140 LKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS 199
L+ E TY+ ++ + + V+ V+ ++ S G P+ M+ +
Sbjct: 107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166
Query: 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQP 259
++ G A+ L + + +++ LV N EA +F+E + S
Sbjct: 167 MHVKCGMLIDARRLFD----EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELL 319
+ TF ++++ + +G + + + G D LI + ++ +
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 320 KEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379
+ K+ V + S+++GY G ++A +Y EM G+ TF+++I F +
Sbjct: 283 DGMPEKT-----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT 439
+ + A+ ++ G+ D+V ++L+D Y + G++ + D M KNL +
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----IS 393
Query: 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEM- 498
+ LI R A +++ + P + V+ +G ++ I M
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 499 EEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVN 546
E R KP + + +I +G + EA ++ + AP TVN
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVN 495
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 505 PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554
PD VT+ LI G+C KG++ EA+ +FN+M + G P+ T + LI L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 4e-10
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 396 FGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429
G PDVVT+++LIDG CR G++++ ++L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI----RAGKCDAAKGLL 214
Y + + S + G D ++D M+ G P+ E F S+ + AG D A +L
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALVDVAGHAGDLDKAFEIL 672
Query: 215 SQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI 274
R + + T Y+SL+ A N +A+ ++++ + +P T N LI L
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT 334
++ KA E +M G P+ +TY+ L+ R ++ G +LL + K P++V
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVM 791
Query: 335 YTSVISGYCK 344
I+G C
Sbjct: 792 CRC-ITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-09
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 431 KNLSPNVYTFTILINALCKENRLNDARRFLKQ 462
K L P+V T+ LI+ LC+ R+++A L +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 9/198 (4%)
Query: 179 FDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238
F M PNS + +S+C R G K + + + F+ N+LL+ V+
Sbjct: 478 FRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVT 298
+ A F + + D ++NIL+ G G+ A E F M G +PD VT
Sbjct: 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358
+ +L+ R V +G E ++ K +P++ Y V+ + GK+ +A YN +
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA---YNFI 648
Query: 359 NSCGIKPSAVTFNVLIDG 376
N I P + L++
Sbjct: 649 NKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 290 FGCSPDIVTYNTLISGLCRVNEVARGHELLKE 321
G PD+VTYNTLI GLCR V ELL E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358
PDVVTY ++I G C+ G++D+A + +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288
+ S++ L N EA+ F+ L +P++ T + +RIG + E +
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFR-QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 289 SFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348
G D N L+ R G +F S DVV++ +++GY GK
Sbjct: 517 RTGIGFDGFLPNALLDLYVRC-----GRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKG 570
Query: 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA--EYMRERMLSFGYLPDVVTFS 406
A ++N M G+ P VTF L+ + G MV+ EY + P++ ++
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR 452
++D R G+L + ++M ++P+ + L+NA C+ +R
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA-CRIHR 671
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533
K KPD VT+ LI G C GR+ EA+ + ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGI 363
VTY S+ISGYCK GK+++A ++ EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 47/249 (18%), Positives = 98/249 (39%), Gaps = 12/249 (4%)
Query: 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG 362
I L EL + ++ F+ TY +++ L + +Y + S G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD--VVTFSSLIDGYCRNGQLNQ 420
+P N ++ K G ++ A + F +P+ + ++ ++I G G +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRL------FDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480
L EM TF +++ A ++ + +V F+ +ID
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP 540
+ K G++++A + M EK V + ++ G+ + G EA+ ++ +M G +
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 541 DDITVNSLI 549
D T + +I
Sbjct: 324 DQFTFSIMI 332
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA 367
VTY ++I G CK G++++A ++ EM GI+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD 506
YN +IDG CKAG V+EA + EM+E+ +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 406 SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDA-----RRFL 460
+S + C +GQL Q LKL + M+ + + + L LC+ R + R L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 461 KQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520
+ + N ++ F + G + A + +M E+ D ++ +L+ G+
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKA 165
Query: 521 GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK--GGMPN 559
G EA+ ++++ML G PD T C+L+ GG+P+
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYT----FPCVLRTCGGIPD 202
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 466 NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499
L P YN +IDG C+AG VDEA ++ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV 437
VT+++LIDG C+ G++ + L+L EMK + + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIGC 538
VT+ LI G+C G++ EA+ +F +M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI 296
T+N LI GL + G V++A E F +M G PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287
+PD T+N LI GL R G V +A E +M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL 433
VT++SLI GYC+ G+L + L+L EMK K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD 542
VT+ LI G C GR+ EA+ +F +M G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 4e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 362 GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERM 393
G+KP VT+N LIDG + G + A + + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV 402
VT+N LIDG K G + A + + M G PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292
T+N LI G + G++++A E F +M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP 505
YN ++ KAG+ D A ++ EM+ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503
YN +I G+CKAG ++EA + EM+EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS 191
TYN ++ C+ G + +F+ M+ G PN
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 297 VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV 332
VTYNTLI GLC+ V EL KE+K + PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397
VT+N LI G+ K G + A + + M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294
T+N L+ L++ G+ A +M + G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.93 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.27 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.24 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.11 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.07 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.07 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.83 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.77 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.95 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.83 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.27 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.99 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.68 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.51 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.25 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.16 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.01 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.81 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.74 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.3 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.77 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.68 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.93 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.58 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.14 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.9 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.54 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.52 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.78 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.24 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.85 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.55 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.39 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.27 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.66 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.38 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.31 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.18 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.16 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.1 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=538.26 Aligned_cols=482 Identities=21% Similarity=0.317 Sum_probs=420.5
Q ss_pred ccccCChhHHHHHHHHHhhcCCCCchhHhhhhcC----C-CCchhHH-----HHHHhcCCchHHHHHHHHhhhCCCCCCC
Q 007640 86 NYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCE----K-LSPLNSL-----EVIKRLDNPKLGLKFLEFSRVNLSLNHS 155 (595)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~-----~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (595)
....+|.+.....+..+. +.+.+++ +.+.|.. . +++..+. ..+...+....|+.+|..+.. ||
T Consensus 364 ~~~~~~~~~~~~~y~~l~-r~G~l~e-Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLL-RDGRIKD-CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred cCCCCCchHHHHHHHHHH-HCcCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 333444444555554443 4555444 4433322 2 2333322 234444667788888876642 89
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS--FGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999975 678999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 314 RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
+|.++|+.|...+ +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 597 eA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 597 RAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998765 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 007640 394 LSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPF 473 (595)
Q Consensus 394 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 473 (595)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-----------------------KGRMVEAISIF 530 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~ 530 (595)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999865432 12346799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 531 NKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 531 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
++|++.|+.||..||..++.++++.+..+.+..+++.+...+..+
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 999999999999999999988877777777777777666554433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=534.63 Aligned_cols=453 Identities=19% Similarity=0.304 Sum_probs=428.0
Q ss_pred HHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 126 SLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 126 ~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
...++.++ ++...|+++|+++....-.+++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 34445444 778899999999987777788999999999999999999999999998874 99999999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK-SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
+|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|... .++.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999763 458899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 362 GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT 441 (595)
Q Consensus 362 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 441 (595)
|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCCCCCc
Q 007640 522 RMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----G-------------------GMPNEAFRIMQRASEDQNLQLPS 578 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~ 578 (595)
++++|.+++++|.+.|+.||..+|+.|+..|.+ + +..++|..+|++|.+.+..|+..
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999876432 2 22467999999999999888765
Q ss_pred cccc
Q 007640 579 WKKA 582 (595)
Q Consensus 579 ~~~~ 582 (595)
....
T Consensus 849 T~~~ 852 (1060)
T PLN03218 849 VLSQ 852 (1060)
T ss_pred HHHH
Confidence 4443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=503.67 Aligned_cols=425 Identities=17% Similarity=0.272 Sum_probs=344.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007640 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
..++++.|+.+|.|+....++.||..+|+.++.++++.++++.+.+++..|.+.|+.||..+|+.++..|++.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 34778889999999887777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007640 212 GLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG 291 (595)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (595)
++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+.+.|
T Consensus 179 ~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 99999874 68889999999999999999999999999988888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007640 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN 371 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 371 (595)
+.||..+|+.|+++|++.|++++|.++|++|. .+|+.+|+.||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88888888888888888888888888888774 3577888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 007640 372 VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g 451 (595)
.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||..+|+.|+.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence 88888888888888888888888888888888888888888888888888888877753 57777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-KRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
+.++|.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 8888888888887777888888888888888888888888888888765 477777777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 531 NKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 531 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
++| ++.|+..+|++|+.+|...|+++.|.++++++.+..
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 655 456666666666666555555555555555554433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=506.07 Aligned_cols=461 Identities=17% Similarity=0.248 Sum_probs=367.7
Q ss_pred hHHHHHHHHHhhcCCCCchhHhhhhcCCCCchhH--HHHHH---hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 007640 93 FWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNS--LEVIK---RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLC 167 (595)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~---~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~ 167 (595)
..+.+.+..++.+.+..+. +.+.|..-..|+.+ ..++. +.+..+.|+.+|..+.. .++.||..+|+.++++++
T Consensus 121 ~~~~n~li~~~~~~g~~~~-A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVH-AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred chHHHHHHHHHHhCCChHH-HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhC
Confidence 4456677777777777666 55555554333322 23333 33677788888876653 377888888888888888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHH
Q 007640 168 EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVY 247 (595)
Q Consensus 168 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (595)
+.+++..+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 8888888888888888888888888889999999999999999999999974 577899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 248 MFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE 327 (595)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (595)
+|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007640 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 007640 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK----------------------- 464 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----------------------- 464 (595)
||++|++.|++++|.++|++|.+. |..+|+.++.+|++.|+.++|..+|++|.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 888888888888888888777542 33444444444444444444444444443
Q ss_pred -----------hCCC------------------------------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 465 -----------WNDL------------------------------VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 465 -----------~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+.|+ .+|..+||.+|.+|++.|+.++|.++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3332 34455566677777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKML-RIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7777777777777777777777777777777 4677777777777777777777777777777776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=486.62 Aligned_cols=436 Identities=17% Similarity=0.210 Sum_probs=407.7
Q ss_pred HHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 126 SLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 126 ~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
...++..+ ++.+.+.+++..+. ..|+.||..+|+.|+..|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~ 200 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLV 200 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHH
Confidence 33444444 67788888887665 45788999999999999999999999999999996 479999999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
+.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.+
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007640 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG 362 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g 362 (595)
+|++|. .+|..+|+.+|.+|++.|++++|.++|++|...+ +.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 281 vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 281 VFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 999996 4699999999999999999999999999998665 89999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 363 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 443 LINALCKENRLNDARRFLKQLKW-NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999976 699999999999999999999999999999876 57899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 522 RMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
+++.|..+++++.+.+ +.+..+|..|++.|++.|++++|.++++.|.+.+....+++
T Consensus 509 ~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 509 NLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565 (697)
T ss_pred CcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCe
Confidence 9999999999997543 33567999999999999999999999999999987655544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=494.09 Aligned_cols=468 Identities=16% Similarity=0.228 Sum_probs=387.6
Q ss_pred hhHHHHHHHHHhhcCCCCchhHhhhhcCCCCchhH--HHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 007640 92 EFWFVKVVCTLLLRSSYLSDTCARYLCEKLSPLNS--LEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSL 166 (595)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~ 166 (595)
+..+.+.+..++.+.+..++ +.+.|..-..|+.+ ..++..+ ++++.|+.+|.-+. ..++.||..+|+.+|.++
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~-A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVS-ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISAC 298 (857)
T ss_pred ccchHhHHHHHHhcCCCHHH-HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHH
Confidence 44566778888888887776 66666654444433 2444443 67788888887765 457889999999999999
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHH
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (595)
++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999864 57788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 247 YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 451 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--- 451 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 327 EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 327 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
.+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++
T Consensus 452 --~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 452 --EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred --CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 36888999999999999999999999999986 589999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
+||++|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 8888888888888888887776 46778888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------
Q 007640 487 NVDEANVIVAEME-EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL------------- 552 (595)
Q Consensus 487 ~~~~A~~l~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~------------- 552 (595)
++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++| ++.||..+|.+|+.+|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8888888888887 5678888888888888888888888888888777 3567766666655554
Q ss_pred ---------------------HhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 553 ---------------------LKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 553 ---------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
...|++++|.++.+.|.+.+....|++
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~ 728 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCc
Confidence 456666677777777776666555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-26 Score=263.23 Aligned_cols=422 Identities=12% Similarity=0.032 Sum_probs=201.4
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGL 213 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (595)
++.+.|+.++.-.... .+.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444454444333221 22344455555555555555555555555555433 33444455555555555555555555
Q ss_pred HHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007640 214 LSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
++++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.++ .+...+..++..|...|++++|..+++++.+.. +
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 55554432 23444555555555555555555555555544432 234444445555555555555555555554321 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 294 PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 294 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
.+..+|..+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 344445555555555555555555555544332 2233444445555555555555555555554432 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---------------------
Q 007640 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--------------------- 432 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------- 432 (595)
+..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+...+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence 444555555555555555444432 2233444444444444455555555554444432
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 433 -----------LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 433 -----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+.+..++..+...|...|++++|...|+++.+..+ .++.+++.+...+...|+ ++|+.+++++.+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 133444444444444445555555555554444432 234444444444544444 4455555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 502 RCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. +-+..++..+...+...|++++|..+++++++.+ +.+..++..++.++.+.|++++|.+++++++
T Consensus 833 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 A-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 1133344444444555555555555555555443 2244555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-26 Score=262.09 Aligned_cols=425 Identities=13% Similarity=0.071 Sum_probs=198.2
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007640 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
.++.+.|..+|..+.... +.+...|..+...+...|++++|++.++.+.+.. +........++..+.+.|++++|..
T Consensus 376 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHH
Confidence 355666666665543321 1344455555555566666666666665555443 2222333344444455555555555
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+++.+... .+.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+++.+..
T Consensus 453 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 453 AAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred HHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 55554432 233444555555555555555555555555544332 233444445555555555555555555554332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
+.+..++..+...+.+.|+.++|..+++++.... +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 2234444444555555555555555555544332 2233344444445555555555555555544332 333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR 452 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (595)
+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555444432 2233444444444445555555555555444432 3334444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
+++|.++++.+.+... .+...+..+...+...|++++|.+.++++.+.+ |+..++..++.++.+.|++++|.+.+++
T Consensus 685 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444331 233344444444444444444444444444432 2223334444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 533 MLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 533 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.+.. +.+...+..++..|.+.|++++|.+.++++.+..
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 44432 3334444444444444444444444444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-19 Score=203.90 Aligned_cols=398 Identities=10% Similarity=0.032 Sum_probs=264.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC-HHHH-----------
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS-TFMY----------- 229 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~----------- 229 (595)
....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3456677888888888888888765 55777888888888888888888888888776432211 1111
Q ss_pred -HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 007640 230 -NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGL-- 306 (595)
Q Consensus 230 -~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-- 306 (595)
......+.+.|++++|+..|++.++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1234556678888888888888887654 456677778888888888888888888877542 22333443343333
Q ss_pred ----------------------------------------HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 007640 307 ----------------------------------------CRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG 346 (595)
Q Consensus 307 ----------------------------------------~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 346 (595)
...|++++|.+.+++..... +.+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34455555555555554432 122334444555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCC
Q 007640 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV---------TFSSLIDGYCRNGQ 417 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~ 417 (595)
++++|...|+++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 5555555555554422 1122222223333344555555555554433221111110 11233455666777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
.++|..+++. .+.+...+..+...+.+.|++++|++.++.+.+..+ .+...+..++..|...|++++|.+.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777661 355667778889999999999999999999998764 3688999999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGC--AP---DDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..+.. +.+...+..+..++...|++++|.+++++++.... +| +...+..+...+.+.|++++|++.++++....
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 87652 23556677788889999999999999999987431 22 23567777889999999999999999998644
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-19 Score=203.26 Aligned_cols=517 Identities=13% Similarity=0.045 Sum_probs=331.1
Q ss_pred ccccccCCCcchhhhhhccCCccccchHHHHHHHHHhhcCCCCCCCCCccccccCChhHHHHHHHHHhhcCCCCchhHhh
Q 007640 36 EAAANGVGLPMTLLFFTVRPSRVRASTIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCAR 115 (595)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (595)
.|++....+++..|+-.+|--.-+.+...|...+.. ...-+|+.+-+......+..+.+-.++ +..
T Consensus 18 ~~~~~~~~~~~~~Ll~q~~~~~~~~~~d~a~~~l~k-------------l~~~~p~~p~~~~~~~~~~l~~g~~~~-A~~ 83 (1157)
T PRK11447 18 LPLAQAAPTAQQQLLEQVRLGEATHREDLVRQSLYR-------------LELIDPNNPDVIAARFRLLLRQGDSDG-AQK 83 (1157)
T ss_pred cccccccCCHHHHHHHHHHHHHhhCChHHHHHHHHH-------------HHccCCCCHHHHHHHHHHHHhCCCHHH-HHH
Confidence 334444444555555555555555555555555444 344455556666666666656555444 332
Q ss_pred hhcC--CCCchh--H-----------------H---HHHHhcCCchHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHHcC
Q 007640 116 YLCE--KLSPLN--S-----------------L---EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKT-YNLVMRSLCEMG 170 (595)
Q Consensus 116 ~~~~--~~~~~~--~-----------------~---~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~-y~~li~~~~~~g 170 (595)
.+.. .+.|.. . . .++...++.+.|++.+....... +++... ...........|
T Consensus 84 ~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g 161 (1157)
T PRK11447 84 LLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPA 161 (1157)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCc
Confidence 2222 112211 1 0 12333466777777766554322 233211 111112223458
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCC------------------c---------
Q 007640 171 LHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV------------------T--------- 223 (595)
Q Consensus 171 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~--------- 223 (595)
++++|++.++++.+.. +.+...+..+...+...|+.++|+..++++..... .
T Consensus 162 ~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 162 QRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 8888888888888865 55677777888888888888888888887643210 0
Q ss_pred -----cCHH---------------------HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007640 224 -----MSTF---------------------MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEV 277 (595)
Q Consensus 224 -----~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 277 (595)
|+.. ........+...|++++|+..|++.++..+ .+...+..+...+.+.|++
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 0000 000123455667888888888888887654 4677888888888888999
Q ss_pred HHHHHHHHHHhhCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 007640 278 KKAFEFFYDMGSFGCSP-DIVTY------------NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK 344 (595)
Q Consensus 278 ~~A~~~~~~m~~~g~~p-~~~t~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 344 (595)
++|...|++..+..-.. ....+ ......+.+.|++++|.+.|+++.... +.+...+..+...+..
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 99988888887543111 11111 122345667888888888888887654 3455667778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHH------------------------------------------HHHHHHhcCC
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNV------------------------------------------LIDGFGKVGN 382 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~------------------------------------------ll~~~~~~g~ 382 (595)
.|++++|++.|+++.+.. +.+...+.. +...+...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 888888888888887643 222222222 2233456788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 383 MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQ 462 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 462 (595)
+++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.
T Consensus 477 ~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 477 WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 888888888887753 2255667778888888888888888888887653 33444443333334444444444444433
Q ss_pred HHhC---------------------------------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 463 LKWN---------------------------------------DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 463 ~~~~---------------------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+... ..+.++..+..+...+.+.|++++|++.|++..+..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~- 633 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE- 633 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2110 123355667778888999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+.+...+..++..+...|++++|++.++...+.. +.+..++..+..++.+.|++++|.++++++++..+...+
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 3367888999999999999999999999887643 345667778888999999999999999999887654444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=191.91 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=148.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD---IVTYNTLISGLCRVNE 311 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~ 311 (595)
.+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44556677777777777766543 3455666666677777777777777776665321111 1345556666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA----VTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~ 387 (595)
+++|.++|+++.... +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666665432 234556666666666666666666666666554321111 12333444445555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
..++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555554432 112334444445555555555555555555443211112334444444444444444444444444332
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCC
Q 007640 468 LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM---KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 537 (595)
|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.+
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 23233344444444444444444444444433 3444444444444332 234444444444444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=191.13 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=258.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHh
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP--DVVTYTSVISGYCK 344 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~ 344 (595)
....+...|++++|...|.++.+.. +.+..++..+...+...|++++|..+++.+.......+ ....+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999763 34566889999999999999999999999886432211 12567888999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHH
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQ 420 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~ 420 (595)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998763 45678899999999999999999999999988653332 2245667788899999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4457788889999999999999999999998765443356789999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCC
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK---GGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
. .|+...+..++..+.+.|++++|..+++++++. .|+...+..++..+.. .|+.+++..+++++.+....++|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 467777789999999999999999999999875 6899899988887775 56999999999999998877887
Q ss_pred cccc
Q 007640 578 SWKK 581 (595)
Q Consensus 578 ~~~~ 581 (595)
.|..
T Consensus 354 ~~~c 357 (389)
T PRK11788 354 RYRC 357 (389)
T ss_pred CEEC
Confidence 7654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=186.62 Aligned_cols=407 Identities=13% Similarity=0.009 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+.+ +.+..++..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4666788899999999999999998875 4678889999999999999999999999998865 456778888999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------------
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF--------------------------- 290 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------- 290 (595)
..|++++|+..|......+...+.. ...++.-+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998887766543222221 111111111110111111111100000
Q ss_pred CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007640 291 GCSPDI-VTYNTLISG---LCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365 (595)
Q Consensus 291 g~~p~~-~t~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 365 (595)
...++. ..+..+... ....+++++|.+.|+.....+...| ....|..+...+...|++++|+..|++..+.. +-
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 000000 001111111 1223678999999999886543334 45678888888999999999999999998863 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
+...|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 45688888899999999999999999998864 3467889999999999999999999999998874 556788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV------TFTILIIGHCM 519 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------~~~~li~~~~~ 519 (595)
.+.+.|++++|...+++..... +.++..|+.+...+...|++++|.+.|++..+.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998765 3367889999999999999999999999988763221111 11222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|++++|..++++.++.. +.+...+..++..+.+.|++++|+++++++.+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 799999999999998864 44556788999999999999999999999987643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=177.59 Aligned_cols=402 Identities=14% Similarity=0.105 Sum_probs=324.9
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 232 (595)
--.++|..+.+++-..|++++|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+.+ |+.... ..+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 356789999999999999999999999999976 5677889999999999999999999999988753 554443 446
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-IVTYNTLISGLCRVNE 311 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 311 (595)
...+-..|++++|...|.+.++..+ --...|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 6666678999999999998887543 24668999999999999999999999998854 454 5678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
+++|...+.+..... +.....+..|...|...|..+.|++.|++..+.. +.-...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 999999998887654 3346788888899999999999999999998853 2335789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007640 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 471 (595)
+..... +....+.+.|...|...|.+++|..+|....+-. +--...++.|...|-+.|++++|...+++..... |+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--ch
Confidence 988863 3346688889999999999999999999887752 3345678889999999999999999999988654 54
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007640 472 -PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD-DITVNSL 548 (595)
Q Consensus 472 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 548 (595)
...|+.+...|...|+.++|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-++..++. +|| +..|-.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNl 496 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNL 496 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHH
Confidence 678999999999999999999999998875 443 567888999999999999999999999875 454 3455556
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhcC
Q 007640 549 ISCL---LKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 549 ~~~~---~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.++ +.--++++-.+-+..+.++.
T Consensus 497 lh~lq~vcdw~D~d~~~~kl~sivrdq 523 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYDKRMKKLVSIVRDQ 523 (966)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 5554 33445555444444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=178.25 Aligned_cols=428 Identities=15% Similarity=0.085 Sum_probs=348.8
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGL 213 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (595)
.+-..|++.-..+..+.+ .+....-.+-.++.+..+++....--....+.. +.-..+|..+...+-..|++++|+.+
T Consensus 62 gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHH
Confidence 455566665555533332 122233334456666677776665555555443 55678999999999999999999999
Q ss_pred HHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 214 LSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWT-FNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
++.+++.. +.....|..+..++...|+.+.|.+.|.+.++.. |+... .+.+-...-..|++++|...|.+..+.
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-- 213 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-- 213 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--
Confidence 99998865 4467899999999999999999999999998854 55444 344555666789999999999988864
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007640 293 SP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD-VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTF 370 (595)
Q Consensus 293 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 370 (595)
.| -...|+.|...+-..|++..|++-|++...-. |+ ...|-.|...|...+.+++|+..|.+..... +.....+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 34 35678899999999999999999999988644 44 4689999999999999999999999988753 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007640 371 NVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
..+...|...|.++.|+..+++.++.. |+ ...|+.|..++-..|++.+|.+.+++..... +....+.+.|...|..
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE 366 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 889999999999999999999999864 43 5799999999999999999999999998873 5567788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 007640 450 ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 528 (595)
.|.+++|..+|....+.... -....+.|...|-..|++++|+.-+++.+.- .|+ ...|+.+...|-..|+.+.|++
T Consensus 367 ~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999998865422 3667899999999999999999999999864 565 5689999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007640 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 529 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
.+.+++..+ +-=...++.|...|..+|+..+|+.-++.+++-.+.....+.
T Consensus 444 ~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 444 CYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 999999854 333578899999999999999999999999998776655443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-18 Score=186.80 Aligned_cols=404 Identities=10% Similarity=-0.021 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
...-.+.+....|+.++|++++....... +.+...+..+..++.+.|++++|..++++..+.. +.+...+..++..+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33334445555555555555555555422 3344445555555555555555555555554432 233444445555555
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 317 (595)
..|++++|+..+++..+..+ .+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 55555555555555555432 2333 5555555555555555555555555432 1133333444445555555555555
Q ss_pred HHHHHHhcCCCCCCH------hhHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 007640 318 LLKEVKFKSEFSPDV------VTYTSVISGYC-----KLGKM---DKATGIYNEMNSC-GIKPSAV-TF----NVLIDGF 377 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-~~----~~ll~~~ 377 (595)
.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++
T Consensus 172 ~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 5544332 1111 01111111111 11122 4455555555532 1112111 11 0112233
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCH
Q 007640 378 GKVGNMVSAEYMRERMLSFGYL-PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP---NVYTFTILINALCKENRL 453 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~ 453 (595)
...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4445566666666665554321 221 11113445555666666666666554432100 122334444455556666
Q ss_pred HHHHHHHHHHHhCCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 454 NDARRFLKQLKWNDL-----------VPK---PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 519 (595)
++|..+++.+....+ .|+ ...+..+...+...|++++|.++++++.... +-+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 666666665554321 112 1233445555556666666666666655542 2244455555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 520 KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|++++|++.+++.++.. +.+...+..++..+.+.|++++|..+++++++..+
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 666666666666655532 23344445555555666666666666666655544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-18 Score=182.98 Aligned_cols=328 Identities=13% Similarity=0.104 Sum_probs=151.7
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
++..+.+.|++++|..+++...... +.+...+..++......|++++|...|+++.+..+ .+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 3334444444444444444444332 22233333333444444555555555555444332 233444444444445555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+++|...|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555444321 1223344444444555555555555554443322 1111122122 22444455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhCC
Q 007640 357 EMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQ----GLKLCDEMKGKN 432 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~ 432 (595)
.+.+....++...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++.....
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 54443211222233333444555555555555555555432 2234444555555555555553 455555555442
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 007640 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV-TFT 511 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~ 511 (595)
+.+...+..+...+.+.|++++|...+++.....+. +...+..+...+.+.|++++|...++++.+. .|+.. .+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 334455555555555556666666555555554322 3444555555555566666666666555544 23322 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+..++...|+.++|...|++..+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234445556666666666665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-17 Score=178.00 Aligned_cols=333 Identities=13% Similarity=0.079 Sum_probs=245.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
...++..+.+.|++++|..+++...... +-+...+..++.+....|++++|...++++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3445667778888888888888887765 4455666677777778888888888888887764 4466777888888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|++++|...|++..+..+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 8888888888888887643 4567778888888888888888888887765432 223333333 346778888888888
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS----AEYMRERML 394 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~ 394 (595)
++.+..... .++...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++ |...+++..
T Consensus 200 ~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 888765431 2233444555677788888888888888888764 4456677778888888888875 788888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007640 395 SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFM 474 (595)
Q Consensus 395 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 474 (595)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+...+.. +...
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~ 354 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKW 354 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHH
Confidence 753 3356678888888888888888888888887764 445667777888888888888888888888766432 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..+..++...|+.++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567788888888888888888766
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-16 Score=171.81 Aligned_cols=234 Identities=9% Similarity=-0.038 Sum_probs=173.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007640 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID 410 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 410 (595)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...++++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555554 6667777767666654 355444444455556788888888888887654 344455666677
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 007640 411 GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
.+.+.|+.++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. |+...|..+...+.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887764 3344444444444556689999999998888665 467788888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|...+++..+.. +.+...++.+...+...|++++|+..+++.++.. +-+...+..+..++...|++++|+..++++++
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988874 2356677888888889999999999999988864 55677888999999999999999999999987
Q ss_pred cCCC
Q 007640 571 DQNL 574 (595)
Q Consensus 571 ~~~~ 574 (595)
..+.
T Consensus 706 l~P~ 709 (987)
T PRK09782 706 DIDN 709 (987)
T ss_pred cCCC
Confidence 7653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-16 Score=171.27 Aligned_cols=390 Identities=12% Similarity=-0.003 Sum_probs=288.7
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007640 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
.++.+.|+..|.-+.. ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..+|...|++++|+.
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3677888888876653 33677899999999999999999999999999876 6678899999999999999999998
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-------------------------------CC-
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-------------------------------PD- 260 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------------------------~~- 260 (595)
.|..+...+...+.. ...++..+... .+........+..+. ++
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 216 DLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 887664432111221 11111111111 111111111111100 00
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhH
Q 007640 261 TWTFNILIQG---LSRIGEVKKAFEFFYDMGSFG-CSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTY 335 (595)
Q Consensus 261 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 335 (595)
...+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..... +.+...|
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~ 368 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSY 368 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHH
Confidence 0000111100 022367899999999998754 223 45678888888999999999999999988654 2335688
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 889999999999999999999998864 4567888999999999999999999999999864 33567788888999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHHcCCHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPF------MYNPVIDGFCKAGNVD 489 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~ 489 (595)
|++++|+..|++..+.. +.+...++.+...+...|++++|.+.+++..+.....+.. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998763 5568899999999999999999999999988765332111 1222233344569999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
+|.+++++..+.. +.+...+..+...+.+.|++++|+.+|++..+..
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999988764 2345678899999999999999999999998753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-16 Score=174.58 Aligned_cols=418 Identities=11% Similarity=0.030 Sum_probs=313.4
Q ss_pred CCCchhHH---HHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 120 KLSPLNSL---EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEF 196 (595)
Q Consensus 120 ~~~~~~~~---~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 196 (595)
.++|..|. +|....++.+.|+..+.-... .-+.+...+..+...+...|++++|..++++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45666664 555556888888876655543 223566679999999999999999999999998875 667778889
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
++..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+ .+...+..+...+...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998764 45666 88899999999999999999999999765 366677778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCCHh-hH----HH
Q 007640 277 VKKAFEFFYDMGSFGCSPDI------VTYNTLISGLC-----RVNEV---ARGHELLKEVKFKSEFSPDVV-TY----TS 337 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~~p~~~-~~----~~ 337 (595)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987663 3331 11122222222 12234 778888888875422233321 11 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSCGIK-PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---DVVTFSSLIDGYC 413 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~ 413 (595)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 134456779999999999999987522 322 22235778999999999999999988653111 1345666777889
Q ss_pred HcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007640 414 RNGQLNQGLKLCDEMKGKNL-----------SPN---VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
..|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++....+ .+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 99999999999999986521 123 23556777888999999999999999988764 4688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
..+...|++++|++.+++..+.. |+ ...+...+..+...|++++|+.+++++++. .|+......+-..+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999999999999863 54 566677777889999999999999999985 46655444444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-16 Score=165.87 Aligned_cols=432 Identities=10% Similarity=-0.002 Sum_probs=312.7
Q ss_pred CCchHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHS-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++...|+..+.-+....+ .+ ...+ .++..+...|+.++|+..+++..... +........+...+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555666666665543322 22 1233 78888889999999999999988322 3344444455678888899999999
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 999998875 4457777788888999999999999999988753 555556555555555666667999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhH------HHHHHHH---H--hcCC---hhHHHHHHHHH
Q 007640 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTY------TSVISGY---C--KLGK---MDKATGIYNEM 358 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~------~~ll~~~---~--~~g~---~~~A~~l~~~m 358 (595)
+-+...+..+...+.+.|-...|.++..+-..- +.+....+ ..++..- . ...+ .+.|+.-++.+
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 346777788888899999988888877664321 12221111 1111110 0 1122 33455555555
Q ss_pred HHC-CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007640 359 NSC-GIKPSA-VTF----NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 359 ~~~-g~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
... +-.|.. ..| .-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 541 112322 222 23456788999999999999999988866555688899999999999999999999986643
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HhhHHHHHHHHHHcCCHHHHHH
Q 007640 433 -----LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL-----------VPK---PFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 433 -----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.+++......|.-+|...+++++|..+++.+.+..+ .|+ ...+..++..+...|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233444567899999999999999999999987422 122 2244556778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.++++.... +-|......+...+...|.+.+|++.++.+.... +-+..+....+.++...|++++|..+.+...+..+
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999998764 4488888999999999999999999997776653 55567778889999999999999999999888776
Q ss_pred CCCC
Q 007640 574 LQLP 577 (595)
Q Consensus 574 ~~~~ 577 (595)
.+..
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 5543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-15 Score=161.40 Aligned_cols=425 Identities=11% Similarity=-0.000 Sum_probs=247.6
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHh
Q 007640 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSS--------CIR 203 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--------~~~ 203 (595)
.+++.+.|+...+-+....+ -|...+..+. .+ +++++|..+++++.+.. +-+..++..+... |.+
T Consensus 90 ~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La-~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q 162 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRHP--GDARLERSLA-AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQ 162 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCc--ccHHHHHHHH-Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhh
Confidence 33666666666555443222 3344444332 22 77777777777777764 4455555555554 544
Q ss_pred cCChHHHHHHHHhccCCCCccCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHH
Q 007640 204 AGKCDAAKGLLSQFRPGEVTMSTFMYNSL-LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR-IGEVKKAF 281 (595)
Q Consensus 204 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~ 281 (595)
. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.++ .+......|..+|.. .++ +++.
T Consensus 163 ~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 163 L---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred H---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHH
Confidence 4 33333333 2222223344444444 7777788888888888888877764 345556666667776 356 6666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-----------------------
Q 007640 282 EFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV----------------------- 338 (595)
Q Consensus 282 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l----------------------- 338 (595)
.+++. .++-+......+...|.+.|+.++|.++++++.....-.|+..+|--+
T Consensus 237 al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 237 ALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 66543 223567777788888888888888888888876543222333332211
Q ss_pred -------HHHHHhcCC---------------------------------------------------------------h
Q 007640 339 -------ISGYCKLGK---------------------------------------------------------------M 348 (595)
Q Consensus 339 -------l~~~~~~g~---------------------------------------------------------------~ 348 (595)
+..+.+.+. .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence 111222222 2
Q ss_pred hHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhc----------------------------------------------
Q 007640 349 DKATGIYNEMNSC-G-IKPSAVTFNVLIDGFGKV---------------------------------------------- 380 (595)
Q Consensus 349 ~~A~~l~~~m~~~-g-~~p~~~~~~~ll~~~~~~---------------------------------------------- 380 (595)
++|.++|+..... + -.++.....-++..|.+.
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 2222222222210 0 000011111222222222
Q ss_pred -----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 381 -----------------GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 381 -----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+
T Consensus 473 ~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 2333344433333332 233322222333445677777777777776543 3444455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 444 INALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 523 (595)
..++.+.|++++|...++...+.+. .+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 6677777888888888877776542 23333333444444558888888888888866 46777888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccc
Q 007640 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKK 581 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 581 (595)
++|+..+++.++.. +.+...+..+..++...|++++|++.++++++..+.....+..
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999988865 5566778888888999999999999999998887765554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-13 Score=147.03 Aligned_cols=412 Identities=11% Similarity=0.055 Sum_probs=303.5
Q ss_pred HHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007640 128 EVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207 (595)
Q Consensus 128 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (595)
.++...++...|+.+++-.. .+-+........+...+...|++++|+++|+++.+.. +.++..+..++..+...++.
T Consensus 76 ~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCH
Confidence 34445588888888777665 2223444455555778999999999999999999986 66678888889999999999
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 208 DAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
++|++.++++.... |+...+..++..+...++..+|++.++++.+..+ .+...+..++.++.+.|-...|.++..+-
T Consensus 153 ~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 153 GVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999998863 4555555555555456677679999999999864 47788899999999999999999887754
Q ss_pred hhCCCCCCHHHH------HHHHHHH-----HhcC---CHHHHHHHHHHHHhcCCCCCC-HhhH----HHHHHHHHhcCCh
Q 007640 288 GSFGCSPDIVTY------NTLISGL-----CRVN---EVARGHELLKEVKFKSEFSPD-VVTY----TSVISGYCKLGKM 348 (595)
Q Consensus 288 ~~~g~~p~~~t~------~~li~~~-----~~~g---~~~~A~~~~~~~~~~~~~~p~-~~~~----~~ll~~~~~~g~~ 348 (595)
.+. +.+...-. ..+++.- .... -.+.|+.-++.+...-+..|. ...| .-.+-++...|++
T Consensus 230 p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 230 PNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred ccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 321 11111111 1111110 0111 245566666666543222232 2222 2345678899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG-----YLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
.++++.|+.|...|.+....+-..+.++|...+.+++|..+++.+.... ..++......|.-+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999998876666788899999999999999999999997643 12344446788999999999999999
Q ss_pred HHHHHhhCCC-----------CC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 007640 424 LCDEMKGKNL-----------SP--NV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD 489 (595)
Q Consensus 424 l~~~m~~~~~-----------~p--~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (595)
+++.+.+... .| |- ..+..++..+...|++.+|++.++.+....+ -|......+.+.+...|.+.
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPR 467 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHH
Confidence 9999987411 12 21 2344567778899999999999999987764 48999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLIS 550 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 550 (595)
+|.+.++...... +-+..+....+.++...|++++|..+.+...+. .|+......|-.
T Consensus 468 ~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 468 KAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 9999997777652 335666778888889999999999999999874 455554444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-14 Score=131.45 Aligned_cols=411 Identities=17% Similarity=0.147 Sum_probs=297.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHH-HHHHHhccCCC----------
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG--KCDAA-KGLLSQFRPGE---------- 221 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~~~~~~---------- 221 (595)
.+++=|.|+.. ..+|.+.++.-+|+.|...|++.+...-..|++..+-.+ ++--| .+.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455666544 568899999999999999998888877666665433222 21111 11222222211
Q ss_pred ---------CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 222 ---------VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 222 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
.+-+..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-..+ .+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 1345678999999999999999999999998887778899999999876543322 678899998889
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHH----CCC
Q 007640 293 SPDIVTYNTLISGLCRVNEVARG----HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDK-ATGIYNEMNS----CGI 363 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~l~~~m~~----~g~ 363 (595)
.||..|+|+++.+..+.|+++.| .+++.+|++-+ +.|...+|..+|..+++.++..+ |..++.++.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999999987654 56677787666 89999999999999999888754 4445555433 222
Q ss_pred C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007640 364 K----PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG----YLPD---VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 364 ~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
+ -|...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 245567778888889999999988876654321 2222 2356778888899999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CH--------HH-----HHHHH---
Q 007640 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NV--------DE-----ANVIV--- 495 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~l~--- 495 (595)
+-|+..+...++.+....+.++-..++|..++..|...+......++..+++.+ +. .. |..++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888775555555555555555544 11 11 11111
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 496 ----AEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG----CAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 496 ----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.+|... .......+.....+.+.|+.++|.++|.-+.+.+ ..|......-+++.-........|...++-
T Consensus 509 e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122222 3345566777778899999999999999886643 244455566777788888999999999999
Q ss_pred HHhcCC
Q 007640 568 ASEDQN 573 (595)
Q Consensus 568 ~~~~~~ 573 (595)
|.+...
T Consensus 587 a~~~n~ 592 (625)
T KOG4422|consen 587 ASAFNL 592 (625)
T ss_pred HHHcCc
Confidence 976554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-14 Score=145.19 Aligned_cols=418 Identities=13% Similarity=0.063 Sum_probs=256.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGH--LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
.++.+.+.|.+.|.-.|++..++.+...+..... ..-...|..+.++|-..|++++|...|.+..+..-...+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 5666777777777777788877777777766321 12234577777777777888888777777765432222334445
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhC-----------------
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG----EVKKAFEFFYDMGSF----------------- 290 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~----------------- 290 (595)
|...+.+.|+.+.+...|+.+.+..+ .+..+..+|...|...+ ..+.|..++.+..+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 67777777777777777777766543 34455555555555543 334444444444332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCH------hhHHHHHHHH
Q 007640 291 --------------------GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE--FSPDV------VTYTSVISGY 342 (595)
Q Consensus 291 --------------------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~------~~~~~ll~~~ 342 (595)
+..+.+...|.+...+...|++++|...|+.....-. ..+|. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 2223333444444444444444444444444332200 01111 1112222333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAV-TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQG 421 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 421 (595)
-..++.+.|.+.|..+.... |+.. .|-.++...-..+...+|...+....... ..++..+..+...+.....+..|
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 33344444444444444431 2222 12222212222244455555555544422 23444555555566666666666
Q ss_pred HHHHHHHhhC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 422 LKLCDEMKGK-NLSPNVYTFTILINALCK------------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 422 ~~l~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+-|+...+. ...+|.++...|.+.|.. .+..++|.++|.++.+.++. |...-|.+.-.++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 6555544333 123577777777775543 34578899999999888754 788889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-IGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.+|..+|.+..+... -+..+|-.+..+|...|++..|+++|+...+ .....+......|..++.+.|++.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999998743 2556788999999999999999999999887 34456778889999999999999999999999
Q ss_pred HHhcCCCCCC
Q 007640 568 ASEDQNLQLP 577 (595)
Q Consensus 568 ~~~~~~~~~~ 577 (595)
+....+....
T Consensus 742 a~~~~p~~~~ 751 (1018)
T KOG2002|consen 742 ARHLAPSNTS 751 (1018)
T ss_pred HHHhCCccch
Confidence 9887765544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-14 Score=132.48 Aligned_cols=363 Identities=14% Similarity=0.169 Sum_probs=241.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+.+..+|..||.++|+--..+.|.++|++..+...+.+..+||.+|.+-+-.. ..+++.+|....+.||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 45677899999999999889999999998888766888889998888755333 26788888888888999999999
Q ss_pred HHHHHHcCCHhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHh----hCCCCC----CHHHH
Q 007640 233 LNALVKQNNADEA----VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK-AFEFFYDMG----SFGCSP----DIVTY 299 (595)
Q Consensus 233 i~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~~g~~p----~~~t~ 299 (595)
+.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. ...++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999977654 5677788888999999999999998888887644 333333332 222333 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 300 NTLISGLCRVNEVARGHELLKEVKFKSE---FSPD---VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~p~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
...+..|.+..+.+-|.++..-+....+ +.|+ ...|..+....|+....+.-..+|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 6677777788888888887766654332 2233 234666777888888888888999998877677888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CC
Q 007640 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE-NR 452 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~-g~ 452 (595)
+++....+.++-.-+++.+++..|.......-. +++..|......|+...-..+-.+..+. -+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 888888888888888888888766333222222 2333333333333222111111111110 11
Q ss_pred HHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 453 LNDAR-RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC----KPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 453 ~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
+.++. .--.++.+.. ..+...+.++-.+.+.|..++|.+++.-+.+++- .|......-++..-.+.+....|.
T Consensus 504 ~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 22221 1222333333 3345667777777788888888888877755432 223333334555566677788888
Q ss_pred HHHHHHHHCC
Q 007640 528 SIFNKMLRIG 537 (595)
Q Consensus 528 ~~~~~m~~~g 537 (595)
..++-|...+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 8888776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-13 Score=140.56 Aligned_cols=489 Identities=11% Similarity=0.016 Sum_probs=310.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCccccccCChhHHHHHHHHHhhcCCCCchhHhhhhcC------CCCchhH---HHHHHh
Q 007640 62 TIAAIAHFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCE------KLSPLNS---LEVIKR 132 (595)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~l~~ 132 (595)
...|.++|+..- .-+++|-+.+.--.|..+.+.++... +.++.. ...|+.- ..-+..
T Consensus 146 ~~~A~a~F~~Vl------------~~sp~Nil~LlGkA~i~ynkkdY~~a--l~yyk~al~inp~~~aD~rIgig~Cf~k 211 (1018)
T KOG2002|consen 146 MDDADAQFHFVL------------KQSPDNILALLGKARIAYNKKDYRGA--LKYYKKALRINPACKADVRIGIGHCFWK 211 (1018)
T ss_pred HHHHHHHHHHHH------------hhCCcchHHHHHHHHHHhccccHHHH--HHHHHHHHhcCcccCCCccchhhhHHHh
Confidence 445667776622 22445566677777777777665444 333322 2222221 123344
Q ss_pred cCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007640 133 LDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCE---MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
++..+.|+.-|.-+..-. +.++.++-.|...-.. ...+..++.++...-... +-++...+.|...|.-.|++..
T Consensus 212 l~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred ccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 566666655443332211 1344455444433333 334567777777776655 6678899999999999999999
Q ss_pred HHHHHHhccCCCC--ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 210 AKGLLSQFRPGEV--TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 210 A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
+..+...+..... ..-...|-.+..+|-..|+++.|...|.+..+....--+..+--+...|.+.|+++.+...|+..
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 9999998876431 12234577899999999999999999999887654322455667889999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH----H
Q 007640 288 GSFGCSPDIVTYNTLISGLCRVN----EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM----N 359 (595)
Q Consensus 288 ~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m----~ 359 (595)
.+.. +-+..|...|...|...+ ..+.|..++....... +.|...|-.+...+-...-+. ++..|... .
T Consensus 369 ~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 369 LKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILE 444 (1018)
T ss_pred HHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHH
Confidence 8642 445677777777776654 4677777777766543 456666666666555443333 35555443 3
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 360 SCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF---GYLPDV------VTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 360 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..+..+.....|.+.......|++++|...|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444566677777777777777777777777666543 111222 1111233333444455555555554443
Q ss_pred CC---------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHH
Q 007640 431 KN---------------------------------LSPNVYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYN 476 (595)
Q Consensus 431 ~~---------------------------------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~ 476 (595)
.. ...++..++.+...+.+...+..|.+-|..+... ...+|+.+.-
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 31 1223334444444555555555555544443322 1124555555
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 477 PVIDGFCK------------AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 477 ~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
+|...|.. .+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .....+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCce
Confidence 56554432 245778899999888764 3366777888888899999999999999998864 345668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 545 VNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
|..+.++|...|++-.|++.|+...++..
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999887765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=137.76 Aligned_cols=424 Identities=15% Similarity=0.104 Sum_probs=274.1
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHhccCCC----CccCHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIE-FFVSSCIRAGKCDAAKGLLSQFRPGE----VTMSTFMY 229 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 229 (595)
+..+...|..-|..+....+|+..|+-+.+...-|+.-.+. .+...+.+.+.+.+|++.|+.....- -.....+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44455566677888888899999999988877667665443 34456778888999999888776532 12234456
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------------
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV------------ 297 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------ 297 (595)
+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|...-..||..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 77777888899999999999998775 4777766666777777888898888898886543333322
Q ss_pred HHHHHHH-----HHHhcCCHHHHHHHH---HHHHhcCCCCCCHh---------------------hHHHHHHHHHhcCCh
Q 007640 298 TYNTLIS-----GLCRVNEVARGHELL---KEVKFKSEFSPDVV---------------------TYTSVISGYCKLGKM 348 (595)
Q Consensus 298 t~~~li~-----~~~~~g~~~~A~~~~---~~~~~~~~~~p~~~---------------------~~~~ll~~~~~~g~~ 348 (595)
..+..|. -.-+.++ ..|++.. -.+.. .-+.||-. .--.-..-|.+.|++
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 2211111 1111111 1111111 00000 00111100 000112345566666
Q ss_pred hHHHHHHHHHHHCCCCC------------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKP------------------------------------SAVTFNVLIDGFGKVGNMVSAEYMRER 392 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p------------------------------------~~~~~~~ll~~~~~~g~~~~A~~~~~~ 392 (595)
+.|+++++-+...+-+. +......-.+.....|++++|...+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 66666665554322111 111111111222445778888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 007640 393 MLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP 472 (595)
Q Consensus 393 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 472 (595)
.....-......|| +.-.+-..|++++|++.|-++..- +..+..+...+...|....+...|++++-+.... ++.|+
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 87653222222333 233456788999999988877543 2446777788888888888999999988776543 34468
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLIS-C 551 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~ 551 (595)
.++..|.+.|-+.|+-..|.+.+-+--.. ++-+..+...|..-|....-++.|+.+|++..- +.|+..-|..++. +
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 88999999999999988888776554433 455777888888888888889999999998754 6899999887765 5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 007640 552 LLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRTN 588 (595)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (595)
+.+.|+++.|.++++....+.+.+.+.+..++.+..+
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 5788999999999999999998888877777665443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-11 Score=120.47 Aligned_cols=417 Identities=11% Similarity=0.087 Sum_probs=263.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--C
Q 007640 152 LNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMR----SDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--S 225 (595)
Q Consensus 152 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 225 (595)
++.+...|.+-...=-.+|+.+...+++++-. ..|+..+...|-.=...|-..|..-.+..+....+..|+.. -
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 33455555554444455555555555554422 25555565566555556666666666666655555444422 2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
..+|+.-...|.+.+.++-|..+|...++..+ .+...|...+..--..|..++...+|++.... ++-....|-...+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 34555566666666677777777776666543 35556666665555667777777777777653 33345555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 306 LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
+-..|++..|..++....... +.+...|-.-+..-..+..++.|..+|.+.... .|+...|.--++.---.++.++
T Consensus 594 ~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 667777777777777776543 234566777777777777788888887777664 3666666666666666677788
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 386 AEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
|.+++++.++. -|+ ...|-.+.+.+-+.++++.|.+.|..-.+. +|..+..|..|...=-+.|.+-.|..++++..
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 88877777764 244 345666667777777777777777666544 44455566666666667778888888888877
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHH
Q 007640 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----------------------------RCKPDKVTFTILII 515 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------------------------g~~p~~~~~~~li~ 515 (595)
-.++. +...|-..|+.-.+.|+.+.|..+..+.+.. .+.-|.+..-.+..
T Consensus 747 lkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 747 LKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred hcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 77754 6778888888888888888887776665543 12223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
.+....+++.|.++|++.++.+ +....+|.-+...+.+.|.-++-.+++.+.....+.--+.|
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 5555666677777777766644 44456666666666677766666666666665554444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-12 Score=130.28 Aligned_cols=372 Identities=12% Similarity=0.054 Sum_probs=255.5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
|.+...-...+.+...|++++|..++.+.++.. +.....|.+|...|-..|+.+++...+-.+...+ +-|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 334444445556666688899999888888876 6677888888888888888888888776665544 44667888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhc
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV----TYNTLISGLCRV 309 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~li~~~~~~ 309 (595)
....+.|.++.|.-.|.+.++..+ ++...+---+..|-+.|+...|..-|.++....-+.|.. +.-..++.+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 888888888899888888888764 455555556677888888888888888887653211222 223345566667
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------------------
Q 007640 310 NEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIK------------------------- 364 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~------------------------- 364 (595)
++-+.|.+.++.......-.-+...++.++..|.+...++.|......+......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7778888888877664433445566788888888888888888888777652111
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 365 --PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 365 --p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
++...+ .++-++......+....+...+.+.. ..-+...|.-+..+|...|++.+|+.+|..+.....--+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 222221 12223444455555555555555554 2335567888888888888888888888888877555567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHH
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE--------KRCKPDKVTFTI 512 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~~~~~ 512 (595)
..+..+|...|..++|.+.++.+....+ .+...--.|...+.+.|+.++|.+.++.+.. .+..|+....-.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 8888888888888888888888886653 2455666677778888888888888888542 223444444444
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~ 530 (595)
....+...|+.++-+.+.
T Consensus 532 r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 555566677666644433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-10 Score=113.62 Aligned_cols=411 Identities=10% Similarity=-0.009 Sum_probs=327.4
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc----cCCCCccCHHHHHHHHHHHHHcC
Q 007640 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF----RPGEVTMSTFMYNSLLNALVKQN 240 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g 240 (595)
+|.+..-|+.|..++....+. ++-+..+|......=-..|+.+...+++++- ...|+..+...|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 444555678888888888774 4677788887777777888888888877654 45678888888888888888888
Q ss_pred CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 241 NADEAVYMFKEYFRLYSQP--DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
..-.+..+....+..|+.. -..||+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 8888888888888877643 2457888888899999999999999888753 344566777777666678999999999
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
|++.... ++.....|-.....+-..|+...|..++....+.. +.+...|-.-+..-.....++.|..+|.+....
T Consensus 573 lqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 573 LQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 9998865 34556677777888888999999999999998875 447778888889999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007640 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
.|+...|.--+....-.++.++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+.- +-....|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHH
Confidence 478888888888888889999999999998876 34445678888899999999999999887755432 2245578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI---------------------- 536 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------- 536 (595)
...--+.|.+-.|..++++..-++. -+...|-..|..-.+.|..+.|..++.++++.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 8888889999999999999987753 37888999999999999999999888776542
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccccc
Q 007640 537 -------GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPL 585 (595)
Q Consensus 537 -------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 585 (595)
.+.-|+.....+...+....+++.|+++|+++++.++..-+.|.....+
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 2334555666777888888999999999999999988777766554433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=142.72 Aligned_cols=263 Identities=18% Similarity=0.170 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 301 TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+...+.+.|++++|+++++........+.|...|..+.......++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 446667777888888888854332210123444555566666677888888888888877652 245556666665 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
+++++|..+++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 456667778888888888888888888876432 356777788888888889999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007640 460 LKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA 539 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (595)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|++++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9988877633 57788888888888898888888888877653 3455677888888899999999999999988754 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.|+.+...+.+++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6788888899999999999999988877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-11 Score=123.55 Aligned_cols=370 Identities=13% Similarity=0.080 Sum_probs=278.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR 273 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 273 (595)
.-.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-......+ .|...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHh
Confidence 3334444455699999999999999875 56788999999999999999999988877666554 577899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChh
Q 007640 274 IGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVV----TYTSVISGYCKLGKMD 349 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~ 349 (595)
.|.+++|.-.|.+..+.. +++...+-.-...|-+.|+...|..-|.++....+ +.|.. .-..++..+...++.+
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999764 45555556667788899999999999999987542 11222 2233456677778889
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------C
Q 007640 350 KATGIYNEMNSCG-IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---------------------------D 401 (595)
Q Consensus 350 ~A~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~ 401 (595)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+ +
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887622 23455678888999999999999988777766521122 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
...+ .++-++......+....+........ ...+...|.-+..+|...|++.+|..++..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12223333444444444444444444 44456788999999999999999999999999876666788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLR--------IGCAPDDITVNSLIS 550 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~l~~ 550 (595)
.+|...|.+++|.+.|+..+.. .| +...--+|...+.+.|+.++|.+.++.+.. .+..|+........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999976 34 344455677778899999999999998542 345666777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007640 551 CLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+.+.|+.++-+.....++.
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 99999999887766665554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-11 Score=126.33 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH--HHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DK--VTFT 511 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~--~~~~ 511 (595)
+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.+++..+. .| |. ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHH
Confidence 6667777777777777777777777777765432211111 11112223346777888888887765 33 33 4567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.+.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.+++++...
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888889999999999998644444578888888999999999999999999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-11 Score=116.08 Aligned_cols=400 Identities=11% Similarity=0.008 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN-SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+-...+-+.++|++++|++.|.+.++. .|+ +..|.....+|...|+++++.+--.+..+.+ +.-+.++..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 3445667788999999999999999986 567 7788899999999999999999888887754 22344555566677
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHH--------
Q 007640 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG--CSPDIVTYNTLISGL-------- 306 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~-------- 306 (595)
-..|++++|+.=..-..-.+--.|..+--.+=+.+-+.++ ..+.+.+. +.+ +-|......+....+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhc---ccCCCCCCcHHHHHHHHhhccccccccc
Confidence 7778887776422222111111111111111111111111 11111111 111 122222222211111
Q ss_pred ---------------Hh--cC---CHHHHHHHHHHHHhcCCCCCC-----H------hhHHHHHHHHHhcCChhHHHHHH
Q 007640 307 ---------------CR--VN---EVARGHELLKEVKFKSEFSPD-----V------VTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 307 ---------------~~--~g---~~~~A~~~~~~~~~~~~~~p~-----~------~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
.. .+ .+..|...+.+-.......++ . .+...-...+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 00 01 233333333222111101111 1 11111122234457888899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 007640 356 NEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP 435 (595)
Q Consensus 356 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 435 (595)
+..+.....++ ..|--+..+|....+.++....|.+..+.. +-++.+|..-...+.-.+++++|..=|++.+... +.
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh
Confidence 99888653332 237777778899999999999999988765 3466778887888888889999999999988775 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH--
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-----PDKV-- 508 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-- 508 (595)
+...|-.+.-+..+.+++++++..|++.+++= +--+.+|+.....+...++++.|.+.|+..++.... .+..
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 66777777777788899999999999988753 446789999999999999999999999998865211 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.--.++..- -.+++..|+.++++.++.+ +-....|.+|...-.+.|+.++|+++|++...
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112222222 3488999999999998865 44557788999999999999999999988654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-11 Score=124.47 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=167.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH--HHHHHHHhcCChhH
Q 007640 274 IGEVKKAFEFFYDMGSFGCSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT--SVISGYCKLGKMDK 350 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~g~~~~ 350 (595)
.|++++|.+.+....+.. +++.. |..........|+++.|.+.+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 356666655555443321 11122 222223334556666666666665542 23332221 22445556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 007640 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-------VTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 423 (595)
|.+.++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666665544 334455555666666666666666666666655433211 122233333333444555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 424 LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+. .+++... ++.+....++.+++.+..++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66655433 3456777777778888888888888888777763 3344221 2333345578888888888877663
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+-|...+..+...|.+.|++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 235556677778888888888888888888764 57888877888888888888888888887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=125.71 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=140.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYN--TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMD 349 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 349 (595)
.+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+.++.+.... +-+......+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555555432 33332221 22334445555555555555554433 223344455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007640 350 KATGIYNEMNSCGIKPSA-------VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
+|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555554322111 12222232223333444455555554332 1345666667777777777777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007640 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
.++++..+. +|+.... ++.+....++.+++.+..+...+..+ -|+..+..+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 777777663 4444222 22333345777777777777766553 35666777777777777777777777777765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.|+..++..+...+.+.|+.++|.+++++...
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777777777777777777777776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=141.54 Aligned_cols=260 Identities=16% Similarity=0.139 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCC-CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGE-VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
+...+.+.|++++|.++++...... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455555555555555554332222 1223333444444444555566666666655554432 34444444444 4555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
++++|.+++....+. .++...+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556665555544332 234444455555555556666666665555443333344555555555555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 007640 356 NEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP 435 (595)
Q Consensus 356 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 435 (595)
++..+.. +-|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+..+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 6655532 2234445555555555555555555555544432 2333445555555555566666666665555432 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
|+.....+..++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5555555555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=126.40 Aligned_cols=289 Identities=10% Similarity=-0.010 Sum_probs=186.7
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV--TYNTLISGLCRVNEVARG 315 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A 315 (595)
..|+++.|.+.+.+..+..+. ....+-....++.+.|+.+.|.+.+.+..+. .|+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 457777777777766654321 2333444456666777777777777776543 23332 333346666677777777
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHH
Q 007640 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN-VLIDGF---GKVGNMVSAEYMRE 391 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~A~~~~~ 391 (595)
.+.++.+.... +-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+++...+.
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777654 334556777777777888888888888887776543 222221 111111 22222222333444
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 392 RMLSFGY---LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYT---FTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 392 ~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4443321 1377788888888899999999999999888763 33321 11111222345777888888888776
Q ss_pred CCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 466 NDLVPKP--FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 466 ~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+ .|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 643 245 677788999999999999999999544444478888888999999999999999999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-12 Score=119.44 Aligned_cols=387 Identities=12% Similarity=0.083 Sum_probs=258.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLP----NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
+.+++.+.+++.+|+++|+-....-... .....+.+...+.+.|.++.|+.-|+...+. .|+..+--.|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 3456777888889999887766531111 2234555556678889999999999888765 356555555566666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHhhCCCCCCHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQP------------DTWTFNILI-----QGLSRIG--EVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~------------~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
.-|+.++..+.|.+|+..-..+ +....+-.| +-.-+.+ +.++++-.--++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6788888888888887643222 222222211 1111111 11222222222222112222100
Q ss_pred -------------H--------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhh-----------------------
Q 007640 299 -------------Y--------NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVT----------------------- 334 (595)
Q Consensus 299 -------------~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~----------------------- 334 (595)
| ..-...|.+.|+++.|+++++-+..+..-..+...
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 11123567788888888887776654321111111
Q ss_pred -------HHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007640 335 -------YTS-----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV 402 (595)
Q Consensus 335 -------~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 402 (595)
||. -.......|+++.|.+.|++.+..+-.-....|+ +.-.+-..|++++|+..|-++..- +..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 110 0011123578999999999998643222222233 333567889999999988776542 12467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007640 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
.+...+.+.|....+...|++++.+.... ++.|+...+.|...|-+.|+-..|.+.+-+--. -++.+..+..-|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHH
Confidence 77888889999999999999999988766 688999999999999999999999988765443 3455788888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC-MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
....-+++|+.+|++..- +.|+..-|..||..|. +.|++..|..+++...+ .++.|...+.-|++.+...|.
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999999999999999764 4799999998887665 59999999999998766 578888999889888887774
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-09 Score=103.89 Aligned_cols=419 Identities=11% Similarity=0.078 Sum_probs=307.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS-PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
.+...|-.-+..=.+++.+..|..++++....- |-+ ..|.-.+..=-..|++..|.++|++-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 455577777888888889999999999888753 333 2344444444567899999999998876 46899999999
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF-GC-SPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~li~~~~~~g 310 (595)
|+.=.+-+.++.|..+|++.+- +.|++.+|--..+-=-+.|....|..+|....+. |- .-+...+.+....-.++.
T Consensus 181 I~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876 4688988888888888899999999988877642 10 112233444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 311 EVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGI--------YNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.++.|.-+|+-....- +.+ ...|..+...=-+.|+.....+. |+.++..+ +-|..+|--.++.-...
T Consensus 259 E~ERar~iykyAld~~--pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 259 EYERARFIYKYALDHI--PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhc
Confidence 7888888888776543 222 34555555544455654433322 44455544 56788888888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHH----H----HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---
Q 007640 381 GNMVSAEYMRERMLSFGYLPDV--VTFSSLI----D----GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL--- 447 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~--~~~~~li----~----~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~--- 447 (595)
|+.+...+++++.+.. ++|-. ..|...| + .-....+++.+.++++..++. +|....||..+--.|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 9999999999999986 34422 1222211 1 123578999999999999884 666777777665555
Q ss_pred -HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 448 -CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 448 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
.++.++..|.+++...+ |..|...++...|..-.+.+++|....++++.++.+.. +-.+|.-....-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHH
Confidence 46788999999999887 66788999999999999999999999999999998533 677888888777889999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 007640 527 ISIFNKMLRIG-CAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVPLRT 587 (595)
Q Consensus 527 ~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (595)
..+|+-+++.. .......|-+.|+.-...|.++.|..++++.++...-. ++|.....+..
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe~ 551 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFEA 551 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHhc
Confidence 99999998743 22334567777777789999999999999999876432 26655544433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-11 Score=110.58 Aligned_cols=292 Identities=14% Similarity=0.139 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHH
Q 007640 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~ 352 (595)
.+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+.+.+.+....+.+-+ ......|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665421 223344455666666666666666666666543222111 123344556666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777776644 23344566677777777777777777777766553332 234555556666667778888888777
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007640 429 KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 508 (595)
.+.+ +-.+..--.+.+.....|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.++.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 6664 334445555667777788888888888888777655556677778888888888888888887777653 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK---GGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 573 (595)
.-..+...-....-.+.|..++.+-+.. +|+...+..|++.-.. .|...+....++.|+...-
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3334444434444556666655554443 6787777777776543 3456666667777765543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-10 Score=109.19 Aligned_cols=368 Identities=11% Similarity=0.006 Sum_probs=250.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-
Q 007640 186 GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTF- 264 (595)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~- 264 (595)
+..-|...+-.....+.+.|..+.|+..|...+.. .+....+|-.|.... .+.+.+ ......++..+...-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhcCcccchHHHH
Confidence 33556555555556667778888888888777643 234444444444332 222222 222211111122211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHH
Q 007640 265 NILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYC 343 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~ 343 (595)
-.+..++......+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+... |..+|..++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 123456666678888888888888878766655555566666778899999999999987754332 45677776643
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
+..+.. +..+.+-...=-+--..|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 332222 1122211111013345677788888888899999999999998875 2345678888888999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 424 LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
-++..++-. |-|-..|..|.++|.-.+...-|.-+|++..+..+ -|...|.+|...|.+.++.++|++-|.+....|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999988875 67888999999999999999999999999887653 3788999999999999999999999999888763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLR----IGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. +...+..+...|-+.++..+|.+.|++.++ .|...+ ..+..-|..-+.+.+++++|..+.....
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3 668888999999999999999988888776 232222 2222335556677777777776554444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-09 Score=101.03 Aligned_cols=387 Identities=12% Similarity=-0.018 Sum_probs=274.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH
Q 007640 150 LSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY 229 (595)
Q Consensus 150 ~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 229 (595)
.+...|...+-....++-+.|..+.|++.|......- |..-..|..|...+ -+.+.+..+...+.. ......-
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~---~~h~M~~ 230 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPS---DMHWMKK 230 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCcc---cchHHHH
Confidence 3444677777777778889999999999998877643 44445555544433 223332222222111 0122222
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC--SPDIVTYNTLISGLC 307 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~ 307 (595)
-.+..++-...+.+++..-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 345566777778899999999988888754554445555566778899999999999987521 125677777664322
Q ss_pred hcCCHH-HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 308 RVNEVA-RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 308 ~~g~~~-~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
...++. -|..++ ...... +.|...+.+-|.-.++.+.|...|+..++.+ +.....|+.+.+-|....+...|
T Consensus 311 ~~skLs~LA~~v~----~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS----NIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhHHHHHHHHHHH----HhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 211111 122222 122133 3567778888889999999999999999865 34556788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007640 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN 466 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (595)
..-++..++-. +.|-..|-.|.++|.-.+...-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|+.....
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999864 5588899999999999999999999999998875 779999999999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007640 467 DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK----RCKPDKVTF---TILIIGHCMKGRMVEAISIFNKMLRIGCA 539 (595)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (595)
|-. +...|..|.+.|-+.++.++|...|++.++. |.. +..|. -.|..-+.+.+++++|..+.......
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--- 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--- 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---
Confidence 743 6689999999999999999999998887652 333 22222 22444456677777777666554331
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.-..++|..+++++.+..
T Consensus 537 ---------------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 537 ---------------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred ---------------CchHHHHHHHHHHHHHhc
Confidence 334577777777776544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-09 Score=100.71 Aligned_cols=409 Identities=11% Similarity=0.069 Sum_probs=309.1
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...|-.-..-=..++++..|..+|++.+... ..+...|..-+.+=.+.+.+..|..+++..+..= +.-...|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44455555555566788899999999999866 5677788888888899999999999999998753 222334555666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
+=-..|++..|.++|++..+. .|+...|++.|+.=.+...++.|..+|+...- +.|++.+|-...+.-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 666789999999999999874 78999999999999999999999999999884 46999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH---
Q 007640 315 GHELLKEVKFKSEF-SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS--AVTFNVLIDGFGKVGNMVSAEY--- 388 (595)
Q Consensus 315 A~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~--- 388 (595)
+..+++.....-+- ..+...+.+....=.+...++.|.-+|+-.++. ++.+ ...|......=-+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999887653210 112334455555455677889999999988875 2333 3344444443344455443332
Q ss_pred -----HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHH---HHcCCH
Q 007640 389 -----MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV-------YTFTILINAL---CKENRL 453 (595)
Q Consensus 389 -----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~ll~~~---~~~g~~ 453 (595)
-++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 234444443 457778888888888899999999999999876 45532 1222222222 357889
Q ss_pred HHHHHHHHHHHhCCCCCC-HhhHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 454 NDARRFLKQLKWNDLVPK-PFMYN----PVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~-~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
+.+.++++...+ +.|. ..|+. .......++.++..|.+++...+ |.-|-..+|...|..-.+.+.+|...+
T Consensus 383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999887 3343 44444 44444557889999999999987 457889999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 529 IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 529 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
++++.++.+ +-+-.+|......-...|+.+.|..+|+-++.....+.|
T Consensus 459 LYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 459 LYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999976 667788988888888999999999999999987765554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-10 Score=106.59 Aligned_cols=300 Identities=14% Similarity=0.076 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CCccC--HHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EVTMS--TFMYNSLLN 234 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~li~ 234 (595)
.|-.=++.+. +++.++|+++|-+|.+.. +.+..+--+|.+.|.+.|..|.|+++++.+.+. +.+.+ ..+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3433344333 567889999999998854 555666778888899999999999999888764 22111 234456778
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVN 310 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g 310 (595)
-|...|-+|.|..+|..+.+.+. --......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 88888999999999998876542 34567788889999999999999998888766544432 23444455555567
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
+.+.|..++.+..... +..+..--.+.......|+++.|++.++...+.+..--..+...|..+|...|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888877654 23344445566778888889999988888888754444556777888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 007640 391 ERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK---ENRLNDARRFLKQLKWN 466 (595)
Q Consensus 391 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~ 466 (595)
.++.+.. +....-..+........-.+.|...+.+-+.. .|+...+..+++.-.. .|...+...+++.|...
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8887753 34444444444444445556666665555554 5788888888876543 34455556666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=123.38 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=200.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHH-
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFS-PDVVTYTSVISGYCKLGKMDKATG- 353 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~- 353 (595)
+..+|...|....+. +.-+......+..+|...+++++|.++|+.+....+.. .+...|.+.+-.+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 23344566677788888888888888888887654322 245566666544322 11111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 007640 354 IYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN 432 (595)
Q Consensus 354 l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 432 (595)
+-+++.+.. +-.+.+|.++.++|.-.++.+.|++.|++.+... | ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222233322 4566788888888888888888888888887753 4 56778877777788888888888888876553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTI 512 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 512 (595)
+-+-..|..+.-.|.+.++++.|+-.|+.+.+.++. +......+...+-+.|+.|+|+++++++.....+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 223445556777788888888888888888877644 5667777778888888888888888888876533 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
.+..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|+.-|--|.+-.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 555666778888888888888774 355566777888888888888888888877777665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-10 Score=105.12 Aligned_cols=294 Identities=12% Similarity=0.054 Sum_probs=210.2
Q ss_pred HHHHHHH--HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 161 LVMRSLC--EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 161 ~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
.+..++. -.|+|..|+++..+-.+.+ +.....|..-+.+--+.|+.+.+-.++.++.+..-.++...+-+....+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 4799999999999988776 344456666777788899999999999999876446777788888899999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCC
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI-------VTYNTLISGLCRVNE 311 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~ 311 (595)
.|+.+.|..-++++.+.++ .+........++|.+.|++.+...++..|.+.|.-.+. .+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998876 47788899999999999999999999999988866554 355666665555555
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
.+.-...+++....- ..++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+.++...-.+..+
T Consensus 245 ~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHH
Confidence 555445555554432 344555566677777788888888888887777655551 12223455666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.-.+. .+-++..+.+|...|.+.+.+.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++...
T Consensus 319 ~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55443 1234466777777777777777777777765554 56777777777777777777777777766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-09 Score=104.25 Aligned_cols=285 Identities=9% Similarity=0.071 Sum_probs=140.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|++..|++...+-.+.+.. ....|..-+.+--+.|+.+.+-+++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444432 23344444455555555555555555555432233444444444555555555555555
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA-------VTFNVLIDGFGKVGNMVSAEYMRE 391 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~ 391 (595)
++++.... +...........+|.+.|++.+...++..|.+.|.--+. .+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555433 233444555555566666666666666666555533332 234444444444444444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007640 392 RMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 392 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 471 (595)
..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..+.-.+... .+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 44332 123444455555555666666666666665555543332 1111123344444444444444333321 23
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555554443 4555555555555555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-11 Score=119.62 Aligned_cols=197 Identities=14% Similarity=0.049 Sum_probs=107.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS---SL 408 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l 408 (595)
..+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+.. |+..|+ -+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhh
Confidence 3456666666666666666666666655532 114455555555555555666666666555432 333333 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.-.|.+.++++.|.-.|++..+-+ |-+.+....+...+-+.|+.++|+.+++++...+.+ |+..--.-+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 445556666666666666655543 334445555555556666666666666666555543 333333344445555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++|+..++++++. ++-+...|-.+...|.+.|+.+.|+.-|.-|.+.
T Consensus 574 ~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 574 VEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6666666666554 2223444555556666666666666666555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-09 Score=106.62 Aligned_cols=417 Identities=13% Similarity=0.028 Sum_probs=278.0
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhc----cCCC
Q 007640 146 SRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQF----RPGE 221 (595)
Q Consensus 146 ~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~ 221 (595)
+.+-.++.-|+..--.+..++.-.|++..|..++..-.-. ..|..+.......+.+.+++++|..++... ....
T Consensus 39 adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~ 116 (611)
T KOG1173|consen 39 ADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFS 116 (611)
T ss_pred HHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchh
Confidence 3333334455556666788888888888887777654322 456777777888888888888888888722 1100
Q ss_pred ---------CccC-----------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHh-----
Q 007640 222 ---------VTMS-----------TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL---IQGLSR----- 273 (595)
Q Consensus 222 ---------~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~----- 273 (595)
+.++ ...+-.=...|....++++|...|.+.... |...|..+ +....-
T Consensus 117 yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee 192 (611)
T KOG1173|consen 117 YYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEE 192 (611)
T ss_pred hcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHH
Confidence 0000 000111123344455677777777776543 33333222 211110
Q ss_pred ------------cCC-HHHHHHHHH----HHhh------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 274 ------------IGE-VKKAFEFFY----DMGS------------FGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 274 ------------~g~-~~~A~~~~~----~m~~------------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
.+. .+....+|+ ++.. .+..-+......-.+-+...+++.+..++++.+..
T Consensus 193 ~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle 272 (611)
T KOG1173|consen 193 FELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE 272 (611)
T ss_pred HHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh
Confidence 011 111111222 1100 11222344444555566778899999999999887
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007640 325 KSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 325 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.. ++....+..-|.++...|+..+-..+=.+|++.- |-...+|-++.--|...|+..+|.+.|.+....... =...
T Consensus 273 ~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpa 348 (611)
T KOG1173|consen 273 KD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPA 348 (611)
T ss_pred hC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHH
Confidence 76 4555566666778889999888888888888753 556788888888888889999999999987764311 2357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (595)
|-.+...|.-.|..|.|...+...-+.- +-...-+..+.--|.+.+..+.|.++|.+.....+ .|+..++.+.-....
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYT 426 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhhhheeeh
Confidence 8888889999999999998887765441 11112233344557788999999999998886653 378888888888888
Q ss_pred cCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 485 AGNVDEANVIVAEMEEK--RCK----PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 558 (595)
.+.+.+|..+|+..+.. ... --..+++.|..+|.+.+++++|+..+++.+... +.+..++.+++-.|...|++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCh
Confidence 88999999999887632 011 133467888899999999999999999998864 77888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 007640 559 NEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 559 ~~A~~~~~~~~~~~~~~ 575 (595)
+.|++.|.+++-..+..
T Consensus 506 d~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999998888665544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-09 Score=104.47 Aligned_cols=386 Identities=12% Similarity=0.040 Sum_probs=257.6
Q ss_pred CCchHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHS-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++.+.|.+++.|+.. +.|+ +.-|.....+|...|+|+++++.-....+.+ +.-+..+..-.+++-..|++++|+.
T Consensus 129 kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred ccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHHH
Confidence 456789999999875 3366 7889999999999999999999999888875 4456677777888888888888764
Q ss_pred HHHhc-cCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHh---------------
Q 007640 213 LLSQF-RPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFR-LY--SQPDTWTFNILIQGLSR--------------- 273 (595)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~--------------- 273 (595)
=..-. +-.|+. +..+- .++.-..+ ..|....++-.+ ++ .-|......+....|..
T Consensus 205 D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 205 DVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred hhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 32221 111111 11111 11111111 112222222122 22 12333322222222210
Q ss_pred ----------cC---CHHHHHHHHHHHhh-CCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 274 ----------IG---EVKKAFEFFYDMGS-FGCSPD-----------IVTYNTLISGLCRVNEVARGHELLKEVKFKSEF 328 (595)
Q Consensus 274 ----------~g---~~~~A~~~~~~m~~-~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (595)
.+ .+..|.+.+.+-.. ....++ ..+.......+.-.|+.-.|.+-|+......
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 01 12223322222111 001111 1122222222344688889999999988754
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007640 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
+.+...|--+...|....+.++....|++..+.+ +-|..+|..-...+.-.+++++|..=|++.++.. +-+...|..+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 2223338888888999999999999999998876 4567788888888888999999999999999864 2356677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------CCHhhHHHHHHH
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-------PKPFMYNPVIDG 481 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------p~~~~~~~li~~ 481 (595)
..+..+.++++++...|++.+++ +|..+..|+.....+...+++++|.+.|+..++.... +.+.+.-.++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 77888999999999999999876 6778899999999999999999999999998765322 112222233332
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
-.+ +++..|..++.+..+.+.+ ....|.+|...-.+.|+.++|+++|++....
T Consensus 514 qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 514 QWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred chh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 233 8999999999999987433 5668999999999999999999999987653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=103.11 Aligned_cols=200 Identities=15% Similarity=0.058 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL 447 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~ 447 (595)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444555555555555555555554432 2234455555555566666666666666555543 33444555556666
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 448 CKENRLNDARRFLKQLKWNDL-VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
...|++++|.+.+++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654321 1223455566667777777777777777776653 22455666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 527 ISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..++++..+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777777765 2445566666777777777777777777766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-10 Score=116.48 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=219.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHH
Q 007640 149 NLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFM 228 (595)
Q Consensus 149 ~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 228 (595)
..|..|+..+|..+|..||..|+.+.|- +|..|.....+.+...|+.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4566777777777777777777777777 7777777666667777777777766666665544 456677
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHH
Q 007640 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-SFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~ 307 (595)
|..|..+|...|++.. |+...+ ....++..+...|--.....++..+. ..+.-||..+ .+....
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 7777777777777655 222221 12234445555565555555554432 2233444443 444455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL-GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
-.|.++.+++++..+.......|..+ .+.-.... ..+++-..+-+...+ .|+..+|..++++-...|+++.|
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 66778888888777654332222222 23332222 223333333333333 58999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007640 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN 466 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 466 (595)
..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|...|+.|+..|+..-+..+.+.|....+.+..+ .
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~ 296 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----L 296 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----h
Confidence 9999999999999998888888766 88888999999999999999999999988888877665333222111 1
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 007640 467 DLVPKPFMYNPVIDGFCKAGNVDE-----ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI--GCA 539 (595)
Q Consensus 467 ~~~p~~~~~~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~ 539 (595)
..-.+...+..+..+....+..+. ....+.+..-.|+.-....|. ++.-...+|+-++.+++...|..- ...
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccC
Confidence 111122233333333222222221 111222222224443333333 333344578888888888887652 122
Q ss_pred -CCHHHHHHHHHHHHh
Q 007640 540 -PDDITVNSLISCLLK 554 (595)
Q Consensus 540 -p~~~~~~~l~~~~~~ 554 (595)
.+...|..++.-|.+
T Consensus 376 ~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFR 391 (1088)
T ss_pred cchHHHHHHHHHHHHH
Confidence 234456555655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-08 Score=97.02 Aligned_cols=421 Identities=13% Similarity=0.100 Sum_probs=246.3
Q ss_pred CchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007640 135 NPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLL 214 (595)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 214 (595)
.-..++++..-.-...+ --..+.....-.++..|+-++|....+...... .-+...|..+.-.+...+++++|++.|
T Consensus 22 QYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34445555444433222 223344445555667788888888777777654 445567777777777778888888888
Q ss_pred HhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CC
Q 007640 215 SQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CS 293 (595)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 293 (595)
..+...+ +.+..++.-+.-.-+..++++.....-.+..+..+ .....|..++.++.-.|+...|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8887765 45677777776666777777777777777666543 355677777888888888888888888776543 24
Q ss_pred CCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 007640 294 PDIVTYNTLIS------GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA 367 (595)
Q Consensus 294 p~~~t~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 367 (595)
|+...|..... ...+.|..++|.+.+......- ......-.+-...+.+.+++++|..+|..++... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 56555543322 2345677777777666554321 1122233445566778888888888888888764 555
Q ss_pred HHHHH-HHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 368 VTFNV-LIDGFGKVGNMVSAE-YMRERMLSFGYLPDVVTFSSL-IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 368 ~~~~~-ll~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
.-|.. +..++.+..+.-++. .+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++ ++..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 55544 444444344444444 556555443 1111111111 111111222334445566666777654 233333
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCC----------CCCCHh--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007640 445 NALCKENRLNDARRFLKQL----KWND----------LVPKPF--MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~----~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 508 (595)
..|-.....+-..++.-.+ ...| -+|... ++-.++..+-+.|+++.|..+++..... .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 3332211111111111111 1110 134433 3345666777788888888888887765 45543
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 509 -TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 509 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
-|..-...+...|.+++|..++++..+.+ .+|..+-..-+.-..++++.++|.++..+.-+.+
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 34455566777888888888888887765 5666665566777778888888888877776655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=102.82 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555666666666666666666555432 234455555556666666666666666555432 2233444455555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 306 LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
+...|++++|.+.+++.............+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 555556666665555554322111223334444555555555555555555555432 2223344444455555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 386 AEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555554443 1223334444444444555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-09 Score=113.50 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHH
Q 007640 189 PNSPMIEFFVSSCIR-----AGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK---------QNNADEAVYMFKEYFR 254 (595)
Q Consensus 189 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 254 (595)
.+...|...+++... .+.+++|...|++..+.. +.+...|..+..++.. .+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344455555544322 133567888888887654 2345556555554432 2347788888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-Hh
Q 007640 255 LYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD-VV 333 (595)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~ 333 (595)
..+ .+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+ ..
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~ 407 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAA 407 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChh
Confidence 764 467777788888888888888888888887653 3345667777888888888888888888887654 33 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGY 412 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 412 (595)
.+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333344456667888888888888776432223445666777778888888888888877654 233 33445555566
Q ss_pred HHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 413 CRNGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
+..| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 46766666655431 11222222 22334445666665555 6666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-07 Score=89.73 Aligned_cols=405 Identities=11% Similarity=0.138 Sum_probs=259.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC------CccCHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE------VTMSTFM 228 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 228 (595)
-...|...+.-....+-++-++.+|++.++. ++..-+..|..+++.+++++|.+.+..+.... .+.+-..
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 3457888888888888888999999988874 33346777888889999999999988876431 2345556
Q ss_pred HHHHHHHHHHcCCHh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 229 YNSLLNALVKQNNAD---EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 229 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
|.-+.+..++.-+.- ....+++.+...-...=...|.+|.+.|.+.|.+++|..+|++.... ..+..-|+.+.++
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence 666666666553322 23344444444322222457889999999999999999999988754 2344455555555
Q ss_pred HHhcC----------------------CHHHHHHHHHHHHhcCCC----------CCCHhhHHHHHHHHHhcCChhHHHH
Q 007640 306 LCRVN----------------------EVARGHELLKEVKFKSEF----------SPDVVTYTSVISGYCKLGKMDKATG 353 (595)
Q Consensus 306 ~~~~g----------------------~~~~A~~~~~~~~~~~~~----------~p~~~~~~~ll~~~~~~g~~~~A~~ 353 (595)
|+.-. +++-.+.-|+.+....++ +.++..|..-+. +..|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence 54321 122333344444433211 122333433333 23467777888
Q ss_pred HHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 007640 354 IYNEMNSCGIKPS------AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD---VVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 354 l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l 424 (595)
.|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......-.+..+++.|+++
T Consensus 369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88888764 2332 24577888899999999999999999887543322 34566666667788899999998
Q ss_pred HHHHhhCC-----------CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007640 425 CDEMKGKN-----------LSP------NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 425 ~~~m~~~~-----------~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
+++....- .++ +...|...++.--..|-++....+++++.+..+. ++.+.-.....+-...-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 88764321 111 2234556666666778899999999999887654 45444444445556667
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKV-TFTILIIGHCM---KGRMVEAISIFNKMLRIGCAPDDITVNSLI--SCLLKGGMPNEA 561 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A 561 (595)
++++.+++++-+..-..|++. .|+..+.-+.+ .-+.+.|..+|+++++ |++|...-+.-|+ ..--+.|....|
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~a 605 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHA 605 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888766654445543 46666655543 3468888888888888 6676554322222 222345777777
Q ss_pred HHHHHHHHh
Q 007640 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
..+++++..
T Consensus 606 msiyerat~ 614 (835)
T KOG2047|consen 606 MSIYERATS 614 (835)
T ss_pred HHHHHHHHh
Confidence 777777543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=116.45 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYC---------KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
.+++|.+.|++..... +.+...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3577888888877644 223445555544433 2345789999999988865 446677778888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 382 NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999988874 3356678888888999999999999999988774 2233333444555667889999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 007640 462 QLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLRI-GCA 539 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 539 (595)
++.....+.++..+..+...+...|++++|...+.++... .|+. ...+.+...|+..| ++|...++++.+. .-.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8876543335666778888888999999999999887654 3443 33455555667666 4777777776652 112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
+....+ +-..|.-.|+.+.+..+ +++.+.+..
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 222233 33345556777777776 777776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-08 Score=99.16 Aligned_cols=287 Identities=13% Similarity=0.033 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH
Q 007640 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 337 (595)
..+.........-+...+++.+.+++.+...+.. ++....+..-|.++...|+..+-..+=.++.... +....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 4566666677777888899999999999988643 5666777777778889998887777777777654 456789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
+.--|...|+..+|.+.|.+....+ +-=...|-.....|+-.|..++|...+....+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999987643 2234578888899999999999998887776531 1111112223345777899
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C--CCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN----D--LVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.+-|.++|.+.... .|.|+..++-+.-.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998776 4778888888888888889999999999887621 1 111345789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
+..+++.+... +.+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999998873 55899999999999999999999999999875 5788877766666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=112.01 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
|++.+|..++..-.-+|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...++.++..|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555555555544444432 445555555555555555555555555444
Q ss_pred HHHHH
Q 007640 410 DGYCR 414 (595)
Q Consensus 410 ~~~~~ 414 (595)
-.+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-07 Score=93.59 Aligned_cols=421 Identities=15% Similarity=0.096 Sum_probs=276.7
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007640 131 KRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAA 210 (595)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 210 (595)
..+++-+.|........... ..+.++|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-++.|+++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 33456666666555543322 2567799999999999999999999999999987 77888888888778888999888
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 007640 211 KGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY-SQPDTWTFNILI------QGLSRIGEVKKAFEF 283 (595)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~ 283 (595)
...-.+..+.. +.....|..+..++.-.|+...|..++++..+.. ..|+...|.... ....+.|..++|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88777776643 3355677888888889999999999999988765 246666655433 344567888888888
Q ss_pred HHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-HHHHHhcCChhHHH-HHHHHHHH
Q 007640 284 FYDMGSFGCSPDIVTY-NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV-ISGYCKLGKMDKAT-GIYNEMNS 360 (595)
Q Consensus 284 ~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~-~l~~~m~~ 360 (595)
+..-... ..|...+ .+-...+.+.+++++|..++..+.... ||...|... ..++.+..+.-+++ .+|....+
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7755422 2233333 344567788999999999999998765 776666554 44444455555555 66666654
Q ss_pred CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----hCC---
Q 007640 361 CGIKPSAVTFNVL-IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK----GKN--- 432 (595)
Q Consensus 361 ~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~--- 432 (595)
. .|-...-..+ +.......-.+....++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 283 ~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 K--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred c--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 3 1211111111 111112223344556777778888664 33344443332222221111111111 111
Q ss_pred -------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007640 433 -------LSPNVY--TFTILINALCKENRLNDARRFLKQLKWNDLVPK-PFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 433 -------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
-+|... ++..++..+-+.|+++.|..+++..... .|+ +..|..=.+.+...|++++|..++++..+.+
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 144543 4456778889999999999999998865 454 4556666788999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHh
Q 007640 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS----------LISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.||...-.--..-..+.++.++|.++.....+.|. +.....+ =+.+|.+.|++.+|++-+..+.+
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 34544433455556788999999999999988774 3222211 24567788888888776655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-09 Score=105.93 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=162.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSC-----G-IKPSAVT-FNVLIDGFGKVGNMVSAEYMRERMLSF-----GY-L 399 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 399 (595)
.+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555677777777777777777776543 1 1233322 234666777788888888888777542 21 1
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Q 007640 400 P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK-----NL-SPNV-YTFTILINALCKENRLNDARRFLKQLKWN---DL 468 (595)
Q Consensus 400 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 468 (595)
| -..+++.|..+|++.|++++|...+++..+- +. .|.. ..++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2346677777888888888887777654321 11 2222 23556667788889999999888876432 11
Q ss_pred CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007640 469 VP----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK----RC--KP-DKVTFTILIIGHCMKGRMVEAISIFNKMLR-- 535 (595)
Q Consensus 469 ~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 535 (595)
.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2568899999999999999999999998743 11 22 245678889999999999999999987654
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 536 --IGC-APD-DITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 536 --~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.|. .|+ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 223 4678999999999999999999988876
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-10 Score=101.18 Aligned_cols=238 Identities=15% Similarity=0.034 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY 412 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 412 (595)
..-+.+..+|.+.|.+.+|.+-|+.-.+. .|-+.||..|-++|.+..+++.|..++.+-.+. ++-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467888999999999999999988775 477788888999999999999999999988775 233444445667788
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...++.++|.++++...+.. +.++.....+...|...++++-|..+++++.+.|.. ++..|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88999999999999998774 667777778888888899999999999999999976 8889999999999999999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 493 VIVAEMEEKRCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 493 ~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.-|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ ......++.|.-.-.+.|++++|..+++.+..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99999886644444 3467777777788999999999999888765 55678899998888999999999999999887
Q ss_pred cCCCCC
Q 007640 571 DQNLQL 576 (595)
Q Consensus 571 ~~~~~~ 576 (595)
..+..-
T Consensus 458 ~~P~m~ 463 (478)
T KOG1129|consen 458 VMPDMA 463 (478)
T ss_pred hCcccc
Confidence 765443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-07 Score=87.72 Aligned_cols=416 Identities=10% Similarity=0.029 Sum_probs=247.7
Q ss_pred CCchHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007640 134 DNPKLGLKFLEFSRVNLSL-NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKG 212 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (595)
++-.-|..|.++......- ..++.. .+...+...|++++|...|..+.... .++...+..|.-++.-.|.+.+|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~l--Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQL--WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHH--HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 5667788888887532211 123333 37788889999999999999988865 6777788888888888899999999
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
+-.+..+ ++-....|++...+.|+-++-..+-+.+.+ ...--.+|...-...-.+++|+++|......
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8877654 344455566666777877776666655532 2222334444444455789999999998864
Q ss_pred CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---
Q 007640 293 SPDIVTYNTL-ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAV--- 368 (595)
Q Consensus 293 ~p~~~t~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--- 368 (595)
.|+-...|.- .-+|.+..-++-+.++++....+. +.+....|.......+.-.-..|..-.+++.+.+-..-..
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 4555555543 346678888999999998877653 3445566666655555444445555556665543110000
Q ss_pred ----------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----
Q 007640 369 ----------------------------TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG---- 416 (595)
Q Consensus 369 ----------------------------~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---- 416 (595)
.-..|+--|.+.+++.+|..+.+++.- .++.-|-.-.-.+...|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcC
Confidence 001122234455555555555444321 11111111111111222
Q ss_pred ---CHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007640 417 ---QLNQGLKLCDEMKGKNLSPNV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 417 ---~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...-|...|...-..+..-|. .--..+..++.-..++++..-++..+...=...|.. .-.+.++++..|++.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHH
Confidence 123333333333222222121 112233334444455666666666655443222333 334678888899999999
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 493 VIVAEMEEKRCKPDKVTF-TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV-NSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++|-++....++ |..+| ..+..+|.++++++-|..++-++ +-+.+.... ..+..-|.+++.+--|-+.|+.+..
T Consensus 414 elf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 414 ELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999887755545 55666 55667888899999888766544 333344443 3445578889998888888888877
Q ss_pred cCCCC
Q 007640 571 DQNLQ 575 (595)
Q Consensus 571 ~~~~~ 575 (595)
.++.|
T Consensus 490 lDP~p 494 (557)
T KOG3785|consen 490 LDPTP 494 (557)
T ss_pred cCCCc
Confidence 66543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-07 Score=86.11 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=206.8
Q ss_pred HhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChh
Q 007640 272 SRIGEVKKAFEFFYDMGSF-GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGKMD 349 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~ 349 (595)
+-.++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++..... |+. .......-.+.+.|+++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHh
Confidence 3445555555555444322 345567777888888888999999998888876533 432 22333334456778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007640 350 KATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
....+...+.... +-....|-.-+......++++.|..+-++.++.. +.+...|-.-...+...|++++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 8877777776532 2233344444455567778888888888887753 2244455555567788899999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH
Q 007640 430 GKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI-DGFCK-AGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
... |-+...|..|+..|...|++.+|..+-+..... +..+..+...+. ..+.- ..--++|.++++...+. .|+-
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 663 567888999999999999999988877665443 223455555552 33322 22457788888877754 5553
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 508 -VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 508 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
...+.+...|...|+.++++.++++.+. ..||....+.|.+.+...+.+++|.+.|..++..++.+..
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 3456777788899999999999999886 4799999999999999999999999999999987775543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-07 Score=84.53 Aligned_cols=388 Identities=10% Similarity=0.086 Sum_probs=209.4
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007640 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
++++.+.|+..+.+...... ++...+-.|.-.+.-.|.+.+|..+-....+ ++..-..+...--+.++-++-.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred hhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHH
Confidence 34677777777777655333 5555555566666666777777776554222 2223333444445667766666
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhC
Q 007640 212 GLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNI-LIQGLSRIGEVKKAFEFFYDMGSF 290 (595)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 290 (595)
.+.+.+.+. ..-.-+|.......-.+.+|+++|++++..+ |+-...|. +.-+|.+..-++-+.++++-..+.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666655432 1223334444444445778888888877643 44444444 334566677677777777666542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCCHh-----------------------------hHHHHHH
Q 007640 291 GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEF-SPDVV-----------------------------TYTSVIS 340 (595)
Q Consensus 291 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~-----------------------------~~~~ll~ 340 (595)
++.+....|.......+.=+-..|+.-..++...... -|-.. ..-.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 2333334444333333322222233333333322210 01000 0001122
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-------NMVSAEYMRERMLSFGYLPDVV-TFSSLIDGY 412 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~ 412 (595)
.|.+.++..+|..+.+++.- ..|-......+. +...| .+.-|.+.|+..-+.+..-|.. --.++..++
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 34566677777776665431 122222222222 22222 2344566666555555444432 233455566
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHH
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVIDGFCKAGNVDEA 491 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A 491 (595)
.-..++|+.+..++.+...-...|...+ .+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.++++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 6667788888877777665333344333 4667778888888888888777655555 44444 4556777888888887
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTF-TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
..++-++.. +-+..+. ..+...|.+.+.+--|-+.|+.+... .|++..|
T Consensus 448 W~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 448 WDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 666554432 2233443 33345677777777777777776654 5666666
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=82.90 Aligned_cols=50 Identities=44% Similarity=0.834 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007640 259 PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-08 Score=100.08 Aligned_cols=305 Identities=15% Similarity=0.113 Sum_probs=134.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHh----
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY-NTLISGLCR---- 308 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~---- 308 (595)
..+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4445667777777777664332 22233444556666677777777777777776553 444433 333333311
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 309 -VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM-DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSA 386 (595)
Q Consensus 309 -~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 386 (595)
....+...++++++.... |.......+.-.+.....+ ..+..++..+...|+|+ +|+.|-..|....+..-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 123555566666665443 3333332222222221122 23334444455555432 333333334433333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 387 EYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV--YTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
..++.......- ..+.+.... ....-+|.. .++..+...|...|++++|.++.++.+
T Consensus 163 ~~l~~~~~~~l~---------------~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 163 ESLVEEYVNSLE---------------SNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHHHHHHhhc---------------ccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333322100 000000000 000012222 233334444555555555555555555
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
+..+. .+..|..-.+.+-+.|++++|.+.++...+.... |...-+-.+..+.+.|+.++|.+++....+.+..|-...
T Consensus 222 ~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 222 EHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred hcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 44322 2445555555555555555555555555544322 334444444445555555555555555544332222111
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 545 --------VNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 545 --------~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
....+.+|.+.|++..|++.+..+.+
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12334555566666666655555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=100.35 Aligned_cols=227 Identities=14% Similarity=0.032 Sum_probs=113.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG 346 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 346 (595)
+.++|.+.|.+.+|.+.|+.-++. .|-+.||..|-+.|.+.++.+.|+.++.+-.... +-|+....-+...+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHH
Confidence 344444444444444444444322 3344444444444555455555555444443321 222222233444444445
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
+.++|.++|+...+.. +.++.....+...|.-.++++-|...++++...|.. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555555432 334444444455555555555555555555555532 45555555555555556665555555
Q ss_pred HHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 427 EMKGKNLSPN--VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 427 ~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+....--.|+ ..+|..+.......|++..|.+.|+.....+.. +...+|.|.-.-.+.|++++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5443322222 223444444445556666666666655554422 455566665555566666666666655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-11 Score=82.30 Aligned_cols=50 Identities=54% Similarity=1.028 Sum_probs=36.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=103.57 Aligned_cols=239 Identities=20% Similarity=0.160 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHC-----C--C
Q 007640 297 VTYNTLISGLCRVNEVARGHELLKEVKFK-----SEFSPDVVTY-TSVISGYCKLGKMDKATGIYNEMNSC-----G--I 363 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~p~~~~~-~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~ 363 (595)
.+...+...|...|+++.|+.+++..... +...|.+.+. +.+...|...+++.+|..+|+++..- | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666554432 1112333332 34667777888888888888887541 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CC
Q 007640 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLS-----FGY-LPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKGK---NL 433 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~ 433 (595)
+--..+++.|..+|.+.|++++|...+++..+ .|. .|.+ ..++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11234567777788888888888777766543 111 1222 24566777888899999999888765432 11
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 007640 434 SP----NVYTFTILINALCKENRLNDARRFLKQLKWN----DL---VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-- 500 (595)
Q Consensus 434 ~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 500 (595)
.+ -..+++.|...|.+.|++++|+++++++... +- .-....++.+...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467889999999999999999999987643 11 11245678889999999999999999887542
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 501 --KRC-KPD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 501 --~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.|. .|+ ..+|..|...|...|++++|+++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 222 45789999999999999999999988774
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-06 Score=90.79 Aligned_cols=411 Identities=12% Similarity=0.024 Sum_probs=242.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc-CHHHH
Q 007640 151 SLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM-STFMY 229 (595)
Q Consensus 151 ~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 229 (595)
.+..+...|..|.-++...|+++.+.+.|++...-- .-....|..+...|...|.-..|..+++........| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344577777777777777777777777777766532 3344567777777777777777777777665433222 33333
Q ss_pred HHHHHHHHH-cCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCC-
Q 007640 230 NSLLNALVK-QNNADEAVYMFKEYFRLY----SQPDTWTFNILIQGLSRI-----------GEVKKAFEFFYDMGSFGC- 292 (595)
Q Consensus 230 ~~li~~~~~-~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 292 (595)
-..-..|.+ .+..++++++-.+.+... -......|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333332 356666666655555421 112333444444444321 123466667777665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
.|+...| +.--|+..++++.|.+..++...-. -..+...|..+.-.+.-.+++.+|+.+.+...+.- .-|......
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 2322222 2233556667777777777766542 13456677777777777777777777777665421 111111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 373 LIDGFGKVGNMVSAEYMRERMLSF---------------------GY-------LPDVVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~---------------------g~-------~p~~~~~~~li~~~~~~g~~~~A~~l 424 (595)
-++.-...++.+++......+... |. .-...++..+.......+ ..+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccc
Confidence 122222234444443333222110 00 001112222221111000 000000
Q ss_pred HHHHhhCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007640 425 CDEMKGKNLS--PN------VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 425 ~~~m~~~~~~--p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
. .+....+. |+ ...|......+.+.+..++|...+.+...... -.+..|......+...|+.++|.+.|.
T Consensus 631 ~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 L-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 01111111 22 12344566677888889999888888876653 356778888888889999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 497 EMEEKRCKP-DKVTFTILIIGHCMKGRMVEAIS--IFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 497 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
..... .| ++.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|-.|+..+.+.|+.++|.+.|..+.+-..
T Consensus 709 ~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 98876 34 56678899999999998888888 999999987 77899999999999999999999999999987543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-07 Score=97.99 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=120.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc--
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-- 239 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 239 (595)
...++...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345566777777777777553332 23344455666666777777777777777776665 23444444454444222
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 240 ---NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK-KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 240 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
...+....+|+++....+ ...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 245555666666655442 2222222222222222232 3444555555566442 444444444433333334
Q ss_pred HHHHHHHHhcC----C---------CCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 007640 316 HELLKEVKFKS----E---------FSPDV--VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS-AVTFNVLIDGFGK 379 (595)
Q Consensus 316 ~~~~~~~~~~~----~---------~~p~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~ 379 (595)
.+++....... . -+|.. .++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 44444332110 0 01222 12233344444445555555555544443 222 3334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
.|++.+|...++...... .-|...-+-.+..+.+.|++++|.+++....+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 444444444444444432 123333334444444444444444444444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-07 Score=90.63 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007640 417 QLNQGLKLCDEMKGKNLSPN-VYTFTILINALCKENRLNDARRFLK--------QLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
...++.+++...-+.. +.+ ..+...++......|+++.|.+++. .+.+.+. .+.+..++...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccC
Confidence 3555555555554432 222 3445555666677777777777777 3333332 34455666666777777
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 488 VDEANVIVAEMEEK--RCKPDKVTFTILI----IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 488 ~~~A~~l~~~m~~~--g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
.+.|..++.+.... .-.+......+++ .--.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHH
Confidence 77777777776532 0111222223332 22345677888888888877754 67777777777777764 56666
Q ss_pred HHHHHHH
Q 007640 562 FRIMQRA 568 (595)
Q Consensus 562 ~~~~~~~ 568 (595)
..+-+.+
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 6654443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-06 Score=84.21 Aligned_cols=401 Identities=9% Similarity=0.074 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRS-DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
..|-.-+..+.++|++......|+..+. ..+.....+|...+......+-++.+..++++..+. ++..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4666677788889999999999998776 334445567888999999999999999999999874 34457788999
Q ss_pred HHHcCCHhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCH--HHHHHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLY------SQPDTWTFNILIQGLSRIGEVK---KAFEFFYDMGSFGCSPDI--VTYNTLIS 304 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~--~t~~~li~ 304 (595)
+++.+++++|-+.+..++... .+.+...|+-+-...++.-+.- ....+++.+. +.-+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi--~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI--RRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc--ccCcHHHHHHHHHHHH
Confidence 999999999999998876432 2345667777777777665433 3344455544 224453 46789999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC----------------------ChhHHHHHHHHHHHCC
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG----------------------KMDKATGIYNEMNSCG 362 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g----------------------~~~~A~~l~~~m~~~g 362 (595)
.|.+.|.+++|..++++....- ..+.-|+.+-++|.... +++-.+.-|+.+...+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999977542 34444555555554321 1223333444443321
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007640 363 -----------IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD------VVTFSSLIDGYCRNGQLNQGLKLC 425 (595)
Q Consensus 363 -----------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~l~ 425 (595)
-+.++..|..-.. ...|+..+-...+.+.++. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0122333333222 3456677777788877764 2221 246888999999999999999999
Q ss_pred HHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----------C-------CCHhhHHHHHHHHHHc
Q 007640 426 DEMKGKNLSPN---VYTFTILINALCKENRLNDARRFLKQLKWNDL----------V-------PKPFMYNPVIDGFCKA 485 (595)
Q Consensus 426 ~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~-------p~~~~~~~li~~~~~~ 485 (595)
++..+...+-- ..+|..-...=.+..+++.|.++++.....-- . -+...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887643322 23444444555567789999998887643211 1 1234566677777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---hcCCHHHH
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD-ITVNSLISCLL---KGGMPNEA 561 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~---~~g~~~~A 561 (595)
|-++....+++++.+..+. ++........-+-.+.-++++.+++++-+..=-.|+. .+|+..+.-+. ..-.++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8999999999999988665 3332222233344566789999999988775334444 45665555443 23479999
Q ss_pred HHHHHHHHh
Q 007640 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
+.+|+++++
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 999999998
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-07 Score=81.93 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 307 (595)
+..-|.-.|...|+...|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 455677788888888888888888888764 467788888888888898888888888887643 335667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 387 (595)
..|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887665444445678888888888888888888888888764 334556667777888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
..++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888777664 77777777777777888888777766666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-06 Score=86.50 Aligned_cols=391 Identities=13% Similarity=0.053 Sum_probs=204.7
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
+..+..|+++.|+..|.+.+... ++|...|..-..+|...|++++|++=-.+.++.. +.-...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 45677888888988888888876 6688888888888888888888887776666653 233557888888888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhC---CCCCCHHHHHHHHHHHH----------
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF---EFFYDMGSF---GCSPDIVTYNTLISGLC---------- 307 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~li~~~~---------- 307 (595)
+|+..|.+=++..+ .|...++-+..++.-.....+.+ .++...... ........|..++..+-
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99888888777653 45666666666662111000000 001100000 00000112222222111
Q ss_pred hcCCHHHHHHHHHHHH-----------hcCCCCC------------C----------HhhHHHHHHHHHhcCChhHHHHH
Q 007640 308 RVNEVARGHELLKEVK-----------FKSEFSP------------D----------VVTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~-----------~~~~~~p------------~----------~~~~~~ll~~~~~~g~~~~A~~l 354 (595)
...++..+.-.+.... ...+..| | ..-...+.+...+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111111111111100 0000001 0 11244566667777788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHH
Q 007640 355 YNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS-------LIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~A~~l~~~ 427 (595)
+....+.. -+..-++....+|...|.+.+........++.|-. ...-|+. +..+|.+.++++.++..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877754 44555566667778888777777666666655422 1122222 33355566777888888877
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007640 428 MKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
.......|+... +....+++........-.+..- ..--..-...+.+.|++..|.+.|.++++.. +-|.
T Consensus 324 aLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 324 ALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 655443333211 1222222222222222111111 1111111333445556666666666655553 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..|..-.-+|.+.|.+.+|+.=.+..++.. ++....|..-+.++....+++.|.+.|++.++..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555556666666655555555542 2333334444444445555555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-07 Score=89.12 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 311 EVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEY 388 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 388 (595)
..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555555433222222 2345555666666677777777776666643 3345666666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007640 389 MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468 (595)
Q Consensus 389 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (595)
.|++..+.. +-+..+|..+...+...|++++|.+.|+...+.. +.+. ........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 776666543 1234556666666666777777777777666543 2222 11111112234456777777775544322
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007640 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK---RC--K-PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD 542 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 542 (595)
.++...+ . ......|+.+++ +.+..+.+. .. . .....|..+...+...|++++|+..|++.++.+ +||.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 1221111 1 222234444333 233333321 00 0 123467777777778888888888888877754 3454
Q ss_pred HHHH
Q 007640 543 ITVN 546 (595)
Q Consensus 543 ~~~~ 546 (595)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-05 Score=78.51 Aligned_cols=414 Identities=14% Similarity=0.104 Sum_probs=207.1
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC--IRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
.+...+..-+.++.+.++|++|+.+.+.-... ..+...+ +=.+| .+.++.++|+..++-..+ .+..+...
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L 115 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLEL 115 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcccHHHHHHHHhcccc----cchHHHHH
Confidence 34445555555666666666666444331110 0000010 12222 355666666666652221 12334444
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH---HHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG-LSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI---SGLC 307 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li---~~~~ 307 (595)
-...+.+.|++++|+++|+.+.+++. ++ +...+++ +...+..-.+. + |......| ..+|..+. ..+.
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQVQ-L---LQSVPEVP-EDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhHH-H---HHhccCCC-cchHHHHHHHHHHHH
Confidence 45555566666666666666655443 11 1111111 00000000110 1 11111122 22333332 3345
Q ss_pred hcCCHHHHHHHHHHHHh--------cCCC----CCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----
Q 007640 308 RVNEVARGHELLKEVKF--------KSEF----SPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTF---- 370 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~--------~~~~----~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~---- 370 (595)
..|++.+|+++++.... .... ..+. ..--.|.-.+-..|+.++|..+|...+... ++|....
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~ 265 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAV 265 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHh
Confidence 67888888888877621 1100 0011 112234455667788888888888887765 3444222
Q ss_pred HHHHHHHHhcCCHHH--HHHHHHHHHhCCC----------CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 007640 371 NVLIDGFGKVGNMVS--AEYMRERMLSFGY----------LPDVVTF-SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV 437 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~--A~~~~~~m~~~g~----------~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 437 (595)
|.|+ ++....++-. +...++....... ....... +.++..| .+..+.+.++....... .|.
T Consensus 266 NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~- 339 (652)
T KOG2376|consen 266 NNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE- 339 (652)
T ss_pred cchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-
Confidence 2222 2222222111 1111111111000 0001111 1222222 23344444444333222 333
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCH
Q 007640 438 YTFTILINALC--KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA--------EMEEKRCKPDK 507 (595)
Q Consensus 438 ~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~ 507 (595)
..+.+++..+. +.....++.+++...-+....-...+.-..+......|+++.|.+++. .+.+.+..|-.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 34444544432 233578888888888776544445677778888899999999999999 66666666655
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccc
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRI--GCAPD----DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKK 581 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 581 (595)
+ ..+...+.+.++.+.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+..+.+...+-.
T Consensus 420 V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 420 V--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred H--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 4 45566677777766677777666641 11122 2344444555567899999999999999987777666666
Q ss_pred cccccccccccc
Q 007640 582 AVPLRTNTDIPV 593 (595)
Q Consensus 582 ~~~~~~~~~~~~ 593 (595)
.|..+...|+..
T Consensus 498 lV~a~~~~d~ek 509 (652)
T KOG2376|consen 498 LVTAYARLDPEK 509 (652)
T ss_pred HHHHHHhcCHHH
Confidence 665555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-07 Score=80.97 Aligned_cols=404 Identities=13% Similarity=0.061 Sum_probs=252.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH-HHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS-LLNALV 237 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 237 (595)
+.+.+..+.+..++.+|++++..-.+.. +.+...++.+..+|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566667788899999999999988875 447788899999999999999999999999775 344444432 345667
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQ--GLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
+.+.+.+|+++...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999988642 22221111122 2345678888888888776433 555666666667789999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CHH--------------
Q 007640 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP-------------SAV-------------- 368 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-------------~~~-------------- 368 (595)
.+-|+...+-+|..|- ..|+..+. ..+.|+++.|+++..++++.|++. |+.
T Consensus 164 vqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999999988877764 56766554 457799999999999998877532 211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 369 -TFNVLIDGFGKVGNMVSAEYMRERMLS-FGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINA 446 (595)
Q Consensus 369 -~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 446 (595)
.+|.-...+.+.|+.+.|.+-+-.|.- .....|++|...+.-.- ..+++.+..+-+.-+...+ |....||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 122223345677888888888877742 22345777766554322 2344555555555555554 3456788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 447 LCKENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKA-GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 524 (595)
||+..-++.|-.++.+-.....+ .+...|+ |++++..+ -..++|.+-++.+... +.-......+-+.- .+..+-+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe-~r~~~dd 396 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQE-ARHNRDD 396 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhcccH
Confidence 99999999998887653222111 1233333 34454444 3677776665554432 00000011111111 1111211
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcccccc
Q 007640 525 E----AISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAV 583 (595)
Q Consensus 525 ~----A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 583 (595)
+ |++-+++.++. -....-+-.+.|++..++..+.++|..-.+ ....-+.|+..+
T Consensus 397 ~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve-fC~ehd~WkLNv 454 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE-FCNDHDVWKLNV 454 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh-hhcccceeeecc
Confidence 2 22222222221 011222334567888999999999987664 334445565443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-05 Score=77.28 Aligned_cols=288 Identities=11% Similarity=0.015 Sum_probs=210.8
Q ss_pred cCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLY-SQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVT-YNTLISGLCRVNEVARGH 316 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~ 316 (595)
.++...|...+--+.... .+-|+.....+...+...|+.++|...|++.... .|+..+ .....-.+...|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444433332222 3457778889999999999999999999988743 343322 222223345778888888
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
.+...+.... .-....|..-+..+....+++.|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+..+..
T Consensus 287 ~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 287 ALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 8888876543 2334455555666677889999999999988764 345556655566778899999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 007640 397 GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI-NALC-KENRLNDARRFLKQLKWNDLVPK-PF 473 (595)
Q Consensus 397 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 473 (595)
. +.+...|.-|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..+. ....-++|.++++...+.. |+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHH
Confidence 3 347789999999999999999999887776554 345566665553 2232 2333578889988877654 43 45
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..+.+...+...|..+.++.++++.... .||....+.|...+...+.+.+|...|...+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6778888899999999999999998875 6899999999999999999999999999988754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-06 Score=85.29 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYS-QPDT-WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
..|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3444445555555556555555555443322 1111 111122334455566666666666655431 222222221 11
Q ss_pred HHH----hcCCHHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 305 GLC----RVNEVARGHELLKEVKFKSEFSPD-VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 305 ~~~----~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.+. ..+..+.+.+.+.... . ..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--P-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--c-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 111 1233444444443311 1 1222 2333445556666777777777777776653 3344555666666777
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 380 VGNMVSAEYMRERMLSFGY-LPDV--VTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
.|++++|...+++..+... .++. ..|..+...+...|++++|..++++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777766655321 1221 2344566666777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-06 Score=85.57 Aligned_cols=305 Identities=11% Similarity=0.015 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH
Q 007640 261 TWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV 338 (595)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 338 (595)
...|..+...+...|+.+.+.+.+....+.. ..++... .......+...|++++|.+.+++..... +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 4566677777777888888777666655321 1222211 1222334567899999999999987654 334444442
Q ss_pred HHHHH----hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007640 339 ISGYC----KLGKMDKATGIYNEMNSCGIKPS-AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 339 l~~~~----~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
...+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 22222 245555555555541 122233 3444566678899999999999999999874 345677888899999
Q ss_pred HcCCHHHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhH-H--HHHHHHHHcC
Q 007640 414 RNGQLNQGLKLCDEMKGKNL-SPNV--YTFTILINALCKENRLNDARRFLKQLKWNDLVPK-PFMY-N--PVIDGFCKAG 486 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~-~--~li~~~~~~g 486 (595)
..|++++|...+++...... .++. ..|..+...+...|++++|..++++.......+. .... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999876532 2332 3455788889999999999999999865433112 1111 1 2333344445
Q ss_pred CHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHh
Q 007640 487 NVDEANVI--VAEMEEKRC--KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA---P-----DDITVNSLISCLLK 554 (595)
Q Consensus 487 ~~~~A~~l--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~l~~~~~~ 554 (595)
..+.+.++ +........ ............++...|+.++|..+++.+...... - ..........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 43333333 211111111 111122235666778899999999999998763212 0 12222333445679
Q ss_pred cCCHHHHHHHHHHHHhc
Q 007640 555 GGMPNEAFRIMQRASED 571 (595)
Q Consensus 555 ~g~~~~A~~~~~~~~~~ 571 (595)
.|++++|.+.+..+...
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-07 Score=89.45 Aligned_cols=93 Identities=17% Similarity=-0.053 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR 273 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 273 (595)
|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++.++..+ .+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4444444444455555554444444432 22344444455555555555555555555444332 133344444444444
Q ss_pred cCCHHHHHHHHHHHh
Q 007640 274 IGEVKKAFEFFYDMG 288 (595)
Q Consensus 274 ~g~~~~A~~~~~~m~ 288 (595)
.|++++|.+.|+...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555554444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-06 Score=94.33 Aligned_cols=338 Identities=10% Similarity=-0.014 Sum_probs=210.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CCCH--HHHHHHHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG--C----SPDI--VTYNTLISG 305 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~t~~~li~~ 305 (595)
..+...|+++.+..+++.+.......+..........+...|++++|..++......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3444567777777776654221111222233444556677899999999888775321 0 1111 112223344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 007640 306 LCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIYNEMNSCGI---KP--SAVTFNVLIDG 376 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~---~p--~~~~~~~ll~~ 376 (595)
+...|++++|...+++...... ..+ ....+.+...+...|++++|...+++.....- .+ ...++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 5678999999999988765321 111 13445666677889999999999988864211 11 12345566777
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCC--CHHHHHHHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSF----GYL--P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK--NLSP--NVYTFTILIN 445 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p--~~~~~~~ll~ 445 (595)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999988876542 211 1 2234455666777889999999998876543 1112 2334445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC--CCCCHh--h--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 007640 446 ALCKENRLNDARRFLKQLKWND--LVPKPF--M--YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIG 516 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~ 516 (595)
.+...|+.++|...+....... ...... . ....+..+...|+.+.|.+++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999888875421 111111 0 111224455678999999988776543211111 113456667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 517 HCMKGRMVEAISIFNKMLRI----GCAPD-DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+...|++++|..++++.... |...+ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988763 32222 2456677888999999999999999988754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-06 Score=77.94 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007640 335 YTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
...|.-+|...|++..|..-+++.++.+ +-+..+|..+...|-+.|..+.|.+.|++..+.. +-+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455556666666666666655543 2334455555555555566555555555555542 1233445555555555
Q ss_pred cCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGKN-LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.+.. .+.+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 555555555555554431 1112234444544455555555555555555554422 23344455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+++.....+. ++..+....|..-...|+.+.+-++=..+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555554433 455555555555555555555555444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-05 Score=92.39 Aligned_cols=339 Identities=12% Similarity=0.037 Sum_probs=217.0
Q ss_pred HHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC------CC--HHHHHHHHHH
Q 007640 199 SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ------PD--TWTFNILIQG 270 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------~~--~~~~~~li~~ 270 (595)
......|+++.+..+++.+.......+..........+...|++++|..++......-.. +. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345566888888888777632211122223344555666789999999999887543111 11 1122233345
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHhhHHHHHHHH
Q 007640 271 LSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFKSE----FSPDVVTYTSVISGY 342 (595)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~ll~~~ 342 (595)
+...|++++|...+++....--..+. ...+.+...+...|++++|...+++...... ......++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999987653111121 2345566677889999999999988764211 111123455667788
Q ss_pred HhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 007640 343 CKLGKMDKATGIYNEMNSC----GIK--P-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--YLP--DVVTFSSLIDG 411 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p--~~~~~~~li~~ 411 (595)
...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998887552 211 1 22334556667778899999999988875421 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHhhCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKN--LSPNVY--TF--TILINALCKENRLNDARRFLKQLKWNDLVPK---PFMYNPVIDGF 482 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 482 (595)
+...|+.++|...+.+..... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 889999999999988875421 111111 10 1122444568899999999877654221111 11245677788
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 483 CKAGNVDEANVIVAEMEEK----RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
...|++++|..++++.... |..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999987653 32222 2456677788889999999999999998854
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-06 Score=85.45 Aligned_cols=390 Identities=16% Similarity=0.115 Sum_probs=245.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HH
Q 007640 185 DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT-WT 263 (595)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~ 263 (595)
..+..|...|..+.-+....|++..+.+.|++....- -.....|+.+...|...|.-..|+.++++-......|+. ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688888888888889999999999998887643 345677888888888888888888888887665433433 33
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhh--CCC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCC
Q 007640 264 FNILIQGLS-RIGEVKKAFEFFYDMGS--FGC--SPDIVTYNTLISGLCRV-----------NEVARGHELLKEVKFKSE 327 (595)
Q Consensus 264 ~~~li~~~~-~~g~~~~A~~~~~~m~~--~g~--~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~ 327 (595)
+...-..|. +.+..++++.+-.+... .+. ......|-.+.-+|... ....++.+.+++....++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 34667777776666654 111 11233444444444321 224567777777776665
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007640 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
..|++..|-.+ -|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.- .-|......
T Consensus 476 ~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 55555544433 466778889999999888887556778888888888888899999988888766531 011111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC---------------------C-------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 408 LIDGYCRNGQLNQGLKLCDEMKGK---------------------N-------LSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~---------------------~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
-+..-..-++.++++.....+... | ..-...++..+..-.. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccc
Confidence 122222345555555444333211 0 0001112222211111 000000000
Q ss_pred HHHHHhCCCCC--C------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 460 LKQLKWNDLVP--K------PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 460 ~~~~~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
.. +......| + ...|......+.+.++.++|.--+.+..... +-....|......+...|...+|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 11111112 2 2245667778889999999998888887652 3456677777778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCcccccc
Q 007640 532 KMLRIGCAPDDITVNSLISCLLKGGMPNEAFR--IMQRASEDQNLQLPSWKKAV 583 (595)
Q Consensus 532 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~ 583 (595)
.....+ +.+.....++..++.+.|+..-|.. ++..+.+.++...+.|+..-
T Consensus 709 ~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 709 VALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 988754 4455788899999999999888888 99999999999999998763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-05 Score=79.74 Aligned_cols=405 Identities=13% Similarity=0.159 Sum_probs=195.4
Q ss_pred hhhcCCCCchhHHHHHHhcCCchHHHHHH-HHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCCH
Q 007640 115 RYLCEKLSPLNSLEVIKRLDNPKLGLKFL-EFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDG--HLPNS 191 (595)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~ 191 (595)
+++..+-+++.+..||..-+.. ..++. .-.+.-.+-..|++.-...+.++...+-..+-+++++++.-.. +.-+.
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~--rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~ 1021 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPY--RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENR 1021 (1666)
T ss_pred HHHHhccChHHHHHHHhccChH--HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccch
Confidence 3444455555555555332111 11111 1222333344566677777778888888888888887776532 12222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..-+.|+-...+ .+.....+..+++...+. |+ +.......+-+++|..+|++. ..+..+.+.||.
T Consensus 1022 nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie-- 1086 (1666)
T KOG0985|consen 1022 NLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE-- 1086 (1666)
T ss_pred hhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH--
Confidence 233333333222 233444555555443321 11 233344455566666666554 234444444443
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
..+.++.|.++-++.. .+..|..+..+-...|.+.+|++-|-+. .|...|..++....+.|.+++-
T Consensus 1087 -~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1087 -NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred -HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2244444444443322 3345555555555555555555544332 2444555666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 352 TGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 352 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
.+++....+..-.|... +.|+-+|++.+++.+.+.++. -|+......+.+-|...|.++.|.-+|.....-
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~ 1223 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNF 1223 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhH
Confidence 66555555444333322 345555566555555444332 244444444444444555554444444322100
Q ss_pred --------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 432 --------------------NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 432 --------------------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.-..+..||..+-.+|...+.+.-| +|...++.....-...|+..|-..|-+++-
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 0001233444444444333333222 222223334445566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
+.+++...... +.....|+-|.-.|.+ =++++..+.++-... ....-.+++++-++.-|.+..-++.+..+.
T Consensus 1299 Isl~Ea~LGLE-RAHMgmfTELaiLYsk-ykp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1299 ISLLEAGLGLE-RAHMGMFTELAILYSK-YKPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHhhhchh-HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77776654221 1233445555555544 233333333333322 112235677888888888887777666554
Q ss_pred C
Q 007640 572 Q 572 (595)
Q Consensus 572 ~ 572 (595)
+
T Consensus 1371 D 1371 (1666)
T KOG0985|consen 1371 D 1371 (1666)
T ss_pred h
Confidence 3
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-07 Score=89.03 Aligned_cols=250 Identities=14% Similarity=0.089 Sum_probs=119.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 007640 269 QGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348 (595)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 348 (595)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~--~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS--SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS--SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC--ChhHHHHHHHHHHHhCccch
Confidence 33445566666665554 222111122334445556666667655433 3332222 45544444444433332344
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+.++.-+++....+..+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443333222221 2222222233455566666666665432 2445555566666666666666666666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 428 MKGKNLSPNVYTFTILINALCK--E--NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~--~--g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
|.+.. .| .+...+..++.. . +.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 65542 22 233334443322 1 2466666666665543 344566666666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 007640 504 KPDKVTFTILIIGHCMKGRM-VEAISIFNKMLR 535 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (595)
-+..++..++.+....|+. +.+.+++.++..
T Consensus 233 -~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 -NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2445555555555555655 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00023 Score=70.95 Aligned_cols=415 Identities=10% Similarity=0.055 Sum_probs=248.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+-|..+|+.||+-+..+ .++++.++++++...- +-.+..|..-|..-.+.++++..+.+|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 35889999999988777 8999999999998753 6677889999999999999999999999987643 356666666
Q ss_pred HHHHHHc-CCHhH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCC--
Q 007640 233 LNALVKQ-NNADE----AVYMFKEY-FRLYSQP-DTWTFNILIQG---------LSRIGEVKKAFEFFYDMGSFGCSP-- 294 (595)
Q Consensus 233 i~~~~~~-g~~~~----A~~~~~~m-~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 294 (595)
++--.+. |+... ..+.|+-. .+.|..+ .-..|+..+.- |..+.+++...++|+++..--+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6544432 33222 22333332 2333221 22234444432 334446677778888876421110
Q ss_pred ----CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHhc-CCCCCCH---------------hhHHHHHHHHHhcCC
Q 007640 295 ----DIVTYNTLISGL-------CRVNEVARGHELLKEVKFK-SEFSPDV---------------VTYTSVISGYCKLGK 347 (595)
Q Consensus 295 ----~~~t~~~li~~~-------~~~g~~~~A~~~~~~~~~~-~~~~p~~---------------~~~~~ll~~~~~~g~ 347 (595)
|-.+|..-|... -+...+-.|.++++++... .|+.... ..|..+|..=-..+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111121111111 1223455666666665421 0111111 113333322111110
Q ss_pred ------h--hHHHHHHHHH-HHCCCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 348 ------M--DKATGIYNEM-NSCGIKPSAVTF-----NVLIDGFGKVGN-------MVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 348 ------~--~~A~~l~~~m-~~~g~~p~~~~~-----~~ll~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+ ....-.+++. .-.+..|+.... ...-+.+...|+ .+++..++++.++.-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111122221 122333332111 111122333343 355566666665543333444554
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 007640 407 SLIDGYCRNG---QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP-KPFMYNPVIDGF 482 (595)
Q Consensus 407 ~li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~ 482 (595)
.+.+.--..- ..+.....++++...-..--..+|..+++.-.+..-++.|..+|.+..+.+..+ ++.++++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4443222222 255566666666554322234578888888888889999999999999887776 778888888887
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007640 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD--ITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~ 560 (595)
|. ++.+-|.++|+--.++ ...+..--...+.-+...++-..|..+|++.+..+++++. .+|..++..-..-|+...
T Consensus 413 cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred hc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 74 7888999999886654 2223444467777788889999999999999988666654 689999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007640 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
++++-++.....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888777665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=88.36 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
....+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..-+++.........+..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555666666555433 2222222 44444444343333222334444444443332221111222222223344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCH
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC----RNGQL 418 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~ 418 (595)
...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++. ..+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 5566677766666432 344555566667777777777777777776542 332 2333333332 23357
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHH
Q 007640 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV-DEANVIVAE 497 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~ 497 (595)
.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+....+.. ++.+...++-.....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7777777776554 4567777777777777777777777777776655533 455666666666666665 566677777
Q ss_pred HHHC
Q 007640 498 MEEK 501 (595)
Q Consensus 498 m~~~ 501 (595)
+...
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-05 Score=71.74 Aligned_cols=317 Identities=13% Similarity=0.100 Sum_probs=157.5
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL---IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
.++.-.--+...+...|++.+|+.-|...++. |+..|.++ ...|...|+...|+.=+...++. +||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34444555777777888888888888887653 33334433 45677788888888777777743 66643322
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 301 -TLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 301 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.-...+.+.|.++.|..-|+.+.... |+..+- ..++.+.-..++-. .....+..+..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~ 167 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASG 167 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhc
Confidence 22345667888888888888877654 321100 00000000000000 01112222333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
.|+...|+.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 444444444444444431 2344444444444444444444444444433332 22333333444444444444444444
Q ss_pred HHHHHhCCCCCCHhh----HHH---H------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007640 460 LKQLKWNDLVPKPFM----YNP---V------IDGFCKAGNVDEANVIVAEMEEKRCKPDKV---TFTILIIGHCMKGRM 523 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~----~~~---l------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~li~~~~~~g~~ 523 (595)
.++-.+.+ ||... |-. + +....+.+++.++.+-.+...+........ .+..+-.++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 44443322 22110 100 0 111223455555665555555542221122 233344455556677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
-+|++...+.++.. +.|..++---..+|.-..++++|+.-++++.+-..
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 77777777666532 23356666666677666777777777777665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-05 Score=72.68 Aligned_cols=304 Identities=13% Similarity=0.042 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSLL 233 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 233 (595)
++.-.--+...+...|++.+|+.-|....+.+ +.+-.++-.-...|...|+-..|+.-+.++.+. .||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 45556667788888999999999998888754 333344445556788888888888888888774 4554322 2235
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPD--TWT------------FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY 299 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (595)
..+.+.|.++.|..-|+.+++..+..+ ... ....+..+...|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 667789999999999999888654211 111 1233445667788889999888888642 3367777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----H--
Q 007640 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV----L-- 373 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~----l-- 373 (595)
..-..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++-++. .||...+-. |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888888999999999988877776543 345666777777888889999999888888774 466543211 1
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 374 -------IDGFGKVGNMVSAEYMRERMLSFGYLPDVV---TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 374 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
+......++|.++..-.+...+........ .+..+-.++...|++.+|+....+.++.. +.|..++.--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 112234456666666666666553221222 33445556667778888888888877653 4457777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 444 INALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
..+|.-...++.|+.-|+...+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 788887788888888888877655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-06 Score=77.50 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNT-LISGL 306 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-li~~~ 306 (595)
-+++.+..+.+..++++|++++....+..+ .+......|..+|....++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 466777778889999999999988877654 47788888999999999999999999998754 566655543 24567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 307 CRVNEVARGHELLKEVKFKSEFSPDVVTYTSV--ISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMV 384 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 384 (595)
.+.+.+..|+.+...|... ++...-..- .......+++..+..+.++....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 7889999999999888642 222222222 223356788888888888775432 4445555555567899999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-------------CHH--------HHHH
Q 007640 385 SAEYMRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP-------------NVY--------TFTI 442 (595)
Q Consensus 385 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-------------~~~--------~~~~ 442 (595)
+|.+-|+...+- |.. ....|+.-+ +..+.|+++.|++...+++++|++. |.. .-+.
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999988774 444 446777655 4556789999999999999998752 211 1122
Q ss_pred HHH-------HHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 443 LIN-------ALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~-------~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
++. .+.+.++++.|.+-+-.|.-+ ....|+.|...+.-.-. .+++.+..+-+.-+.+.. +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 333 234677888888877776432 22345566555433222 234444444444444442 23567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLRIGCA-PDDITVNSLISCLL-KGGMPNEAFRIMQRAS 569 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 569 (595)
-.||++.-++-|-.++-+--...+. .+...| .|++++. ..-..++|.+-++...
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889988888888877553322111 222333 3444443 3456777777666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-05 Score=79.83 Aligned_cols=229 Identities=16% Similarity=0.184 Sum_probs=109.5
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CC--------ccCHHHHHHHHHHH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EV--------TMSTFMYNSLLNAL 236 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~~li~~~ 236 (595)
|..-|+.+.|.+-.+.++.. .+|..+.+.|.+.+++|-|.-.+..|... |. .++ ..-.......
T Consensus 738 yvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 44455555555555444332 25555555555555555544444443221 00 011 1111122222
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
...|.+++|+.+|.+-.+ |..|=..|...|.+++|+++-+.-.... =..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 344556666666655543 2233344555566666655544221111 1123333333333444555555
Q ss_pred HHHHHHH----------hcC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 317 ELLKEVK----------FKS--------EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFG 378 (595)
Q Consensus 317 ~~~~~~~----------~~~--------~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 378 (595)
+.|++.. ... .-..|...|.-....+-..|+++.|+.+|....+ |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 5443321 000 0012334444445555566777777777766553 344555566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
-.|+.++|.++-++- -|......+.+.|...|++.+|..+|.+.
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666666655442 24455556666666667766666666544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-05 Score=77.96 Aligned_cols=231 Identities=10% Similarity=0.009 Sum_probs=137.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--H
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL--N 419 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~ 419 (595)
...++.++|+.++.++++.. +-+...|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 34456667777776666542 223334444444445555 4567777777666653 22444555444444445542 5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CC----HHHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA---GN----VDEAN 492 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~ 492 (595)
+++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777776654 446667777777777777777777777777776644 556666665555444 22 24566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 007640 493 VIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG------------ 556 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 556 (595)
.+..++++.. +-|...|+.+...+.. .++..+|...+.+..+.+ +.+...+..|++.|+...
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6666666553 2355667666666665 234566777777766543 445667777777777532
Q ss_pred ------CHHHHHHHHHHHHhcCCCCCCcc
Q 007640 557 ------MPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 557 ------~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
..++|.++++.+.+.+++...-|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 34678888888765555444333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00018 Score=71.77 Aligned_cols=366 Identities=12% Similarity=0.054 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
++|-..|..-..+|...|++++|++=-.+-.+.. |.-+..|.....+..-.|++++|+..|.+-.+.. +.+...++-+
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 3577889999999999999999988777766654 4556789999999999999999999999988764 4466667777
Q ss_pred HHHHHHcCCHhHHH---HHHHHHHHcC---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH-----hhCC
Q 007640 233 LNALVKQNNADEAV---YMFKEYFRLY---SQPDTWTFNILIQGLSRI----------GEVKKAFEFFYDM-----GSFG 291 (595)
Q Consensus 233 i~~~~~~g~~~~A~---~~~~~m~~~~---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-----~~~g 291 (595)
..++.......+.. .++..+...- .......|..++..+-+. .++..|...+... ...|
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 77762211000000 0111111000 000111233333222111 1111221111110 0001
Q ss_pred -------CCCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007640 292 -------CSPD----------------------IVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 292 -------~~p~----------------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
..|. ..-...+..+..+..+++.|++-+...... ..++.-++....+|
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHH
Confidence 1110 112345666777778888888888877653 24556667778888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFN-------VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-------~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
...|.+.++...-....+.|-. ...-|+ .+..+|.+.++++.+...|.+.......|+. ..+.
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~l 337 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKL 337 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHH
Confidence 9999988888877777666521 122222 2344667778889999999887654333332 2223
Q ss_pred CCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNV-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
...+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++..++ -|...|....-+|.+.|.+..|++=
T Consensus 338 k~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34455555444433222 221 1122225566788888888888888888773 4788888888888888888888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 495 VAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 495 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
-+...+.. ++....|..=..++....+++.|.+.|++.++.+
T Consensus 415 a~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 415 AKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777662 2233345444555556678888888888887754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00062 Score=72.65 Aligned_cols=368 Identities=14% Similarity=0.115 Sum_probs=185.4
Q ss_pred hcCCCCchhHHHHHHhc---CCchHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH
Q 007640 117 LCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSR-VNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSP 192 (595)
Q Consensus 117 ~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~-~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 192 (595)
+.+.-+|+.+....+.+ .-|..-..+.+-.. ....++-+...-|.||-...+..+ ....+..+++...+ .|+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyD-a~~-- 1053 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYD-APD-- 1053 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCC-chh--
Confidence 44455666666666555 33444444443332 233455566666777666555443 44555555554433 222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 193 MIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
+...+...+-+++|..+|++... +..+.+.|+.- -+..+.|.+.-++. -....|..+..+-.
T Consensus 1054 ----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQL 1115 (1666)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHH
Confidence 23344455566666666665432 33333333332 24455555444443 23334555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+.|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+.+....++. -.|. .=+.||-+|++.++..+..
T Consensus 1116 ~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~--id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPY--IDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred hcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCcc--chHHHHHHHHHhchHHHHH
Confidence 5555555555543321 44555555555555666655555554444332 1222 2234555555555554443
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHH
Q 007640 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG--------------------YLPDVVTFSSLIDGY 412 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~li~~~ 412 (595)
+++ .-||......+.+-|...|.++.|.-+|..+.... -..+..+|..+-.+|
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFAC 1259 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 332 12454444455555555555555544443211100 011334444444444
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEAN 492 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (595)
...+.+.-| +|-..++-....-..-++..|-..|-+++.+.+++...... ...-..|+.|.-.|.+- ++++..
T Consensus 1260 vd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1260 VDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred hchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence 443333222 23223333444556778999999999999999988765322 12345677777777765 344444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 493 VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.++-.-.+ .-.--+|.++-+..-+.|..-++.+-.+
T Consensus 1333 EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1333 EHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444333322 1123467777777777777766665543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-06 Score=82.99 Aligned_cols=251 Identities=14% Similarity=0.059 Sum_probs=148.7
Q ss_pred HHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 201 CIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (595)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++..+ -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 446666777777777766654 44666777777777777777777777777776654 3566666677777777777777
Q ss_pred HHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 281 FEFFYDMGSFGCS--------PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 281 ~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+..++.-+....+ ++...-.. ..+.....+....++|-++....+..+|......|.-.|.-.|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7766665432100 00000000 1122223344455555555555444466666667776777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 007640 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKG- 430 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~- 430 (595)
+.|+..+... +-|...||.|...++...+.++|+.-|.+..+. .|.- .+...|.-.|...|.+++|.+.|-..+.
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7777777643 345566777777777777777777777777765 3432 2333345566777777777776654322
Q ss_pred --C------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 431 --K------NLSPNVYTFTILINALCKENRLNDARR 458 (595)
Q Consensus 431 --~------~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (595)
. ...++...|..|=.++.-.++.|-+..
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666666666666664443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00013 Score=74.86 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (595)
.|..|.+.|.+..|......-.. +..+..+...+..++.+..-+++|-.+|+++
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 34455555555554443221111 1223334444444444444444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.6e-06 Score=77.35 Aligned_cols=187 Identities=12% Similarity=0.036 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---
Q 007640 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-V---VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV--- 437 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--- 437 (595)
.....+..+...+...|++++|...++++.... |+ . ..+..+..++...|++++|...++++.+.. +.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 345566667777777888888888887776643 22 1 355666777777888888888888877653 1111
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 438 YTFTILINALCKE--------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 438 ~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
.++..+..++.+. |++++|.+.++.+....+. +...+..+..... .... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 2344445555443 5677777777777655422 2222222111100 0000 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 510 FTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...+...+.+.|++++|+..+++.++.. -+.....+..++.++.+.|++++|..+++.+..+++
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1245567889999999999999998752 123457888999999999999999999999887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00088 Score=70.04 Aligned_cols=404 Identities=16% Similarity=0.087 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-C-------C-CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD-G-------H-LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
+-.+|..|.+.+.+..+++-|.-.+..|... | . .++ .+-..+.......|.+++|..+|++.++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 5668999999999999999998888777541 1 0 122 22233333445778888999888887653
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------hCC----
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG----------SFG---- 291 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g---- 291 (595)
..|=..|-..|.+++|.++-+.--+.. =..||..-...+-..++.+.|++.|++.. ...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 223344555677777777665432211 12345555555556666666666665431 110
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------CCCCCHhhHHHHHHHHHhcCC
Q 007640 292 -----CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS-------------------EFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 292 -----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~p~~~~~~~ll~~~~~~g~ 347 (595)
-..|...|.-....+-..|+++.|+.++......- .-..|......|...|-..|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 01123333434444445666666666665543211 012456677788899999999
Q ss_pred hhHHHHHHHHHHH----------CCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHH-
Q 007640 348 MDKATGIYNEMNS----------CGIKPSAVTFN-------------------------VLIDGFGKVGNMVSAEYMRE- 391 (595)
Q Consensus 348 ~~~A~~l~~~m~~----------~g~~p~~~~~~-------------------------~ll~~~~~~g~~~~A~~~~~- 391 (595)
+.+|...|.+... .+++ ...+| ..+..|-+.|.+.+|+++--
T Consensus 983 v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence 9999999988743 2211 11111 12234455555555544321
Q ss_pred -------HHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----------hCCC----------------CCC
Q 007640 392 -------RMLSFGY--LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK----------GKNL----------------SPN 436 (595)
Q Consensus 392 -------~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~~~~----------------~p~ 436 (595)
+++...+ ..|+...+...+-++...++++|..++-... ..++ .|+
T Consensus 1061 tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred hcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCcc
Confidence 1111122 2355566666666666666666665543211 0111 122
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHH----------HhCC-----------------------------CCCCHh
Q 007640 437 V----YTFTILINALCKENRLNDARRFLKQL----------KWND-----------------------------LVPKPF 473 (595)
Q Consensus 437 ~----~~~~~ll~~~~~~g~~~~A~~~~~~~----------~~~~-----------------------------~~p~~~ 473 (595)
. .....+...|.+.|.+..|-+-|.+. .+.| ...++.
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq 1220 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQ 1220 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChH
Confidence 2 34555667778888877766544331 2222 112222
Q ss_pred hH-------------HHHHHHHHHc---------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 007640 474 MY-------------NPVIDGFCKA---------------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM------ 519 (595)
Q Consensus 474 ~~-------------~~li~~~~~~---------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~------ 519 (595)
+. ..|...|..+ |-.++|.+.+.++..+. -....|+.|-.-...
T Consensus 1221 ~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~ 1298 (1416)
T KOG3617|consen 1221 TMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLR 1298 (1416)
T ss_pred HHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHH
Confidence 22 2333322211 23344444444444332 122223333222211
Q ss_pred -----cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 520 -----KGRMVEAISIFNKMLRIGCAPD----DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 520 -----~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
..+..+.+.-.+.|.+....|| ...|..||..+....++..|.+.++.+.++.+.-
T Consensus 1299 ~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1299 KLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 2355566666666776544443 3578899999999999999999999999876543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0001 Score=75.71 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=92.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
.....+.+|+.+++.+.+.. .-..-|..+...|+..|+++.|+++|.+. ..++--|..|.+.|+++.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 33444555555555544432 22233444555555555555555555431 12333445555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007640 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
++-.+... .......|.+-..-+-+.|++.+|++++-.+. .|+ ..|..|-+.|..+..+++.++-...
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 55444321 12233334333344445555555555443222 122 2345555555555555554433211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.-..|-..+..-+-..|+..+|..-|-+.. -|.+-+..|...+.|++|.++-
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 012344455556666777777776654432 2445566777777777776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.1e-05 Score=74.21 Aligned_cols=215 Identities=6% Similarity=-0.028 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG-KCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
++..+-.++...++.++|+.+++++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.-...+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 55556666777889999999999999875 556667777777777777 5789999999888765 34556677665556
Q ss_pred HHcCCH--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CC
Q 007640 237 VKQNNA--DEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRV---NE 311 (595)
Q Consensus 237 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~ 311 (595)
.+.|+. ++++.+++++++..+ .|..+|+....++...|+++++++.++++++... -|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 666653 677888888888775 5788898888888899999999999999987653 3566666655555443 22
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 312 ----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL----GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 312 ----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
.++..+...++.... +-|...|+.+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 245666665555443 45567777777777663 34456777777766543 3455666677777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-05 Score=83.59 Aligned_cols=236 Identities=12% Similarity=0.102 Sum_probs=185.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP-----SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.....|-..|......++.+.|.++.++.+.. +.+ -...|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 34577888899999999999999999998753 212 12457777777777788888899999998852 23457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFC 483 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~ 483 (595)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-++|..++.+..+.-++ -......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999887 3456788999999999999999999999998865432 12445566677778
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDD--ITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 561 (595)
+.|+.+.+..+|+..+... +-....|+.+|..-.+.|+.+.+..+|++.+..++.|-. ..|...+..--+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999999988763 336778999999999999999999999999998877754 4566666655666776666
Q ss_pred HHHHHHHHh
Q 007640 562 FRIMQRASE 570 (595)
Q Consensus 562 ~~~~~~~~~ 570 (595)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-06 Score=81.83 Aligned_cols=250 Identities=10% Similarity=-0.003 Sum_probs=184.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 304 SGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNM 383 (595)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 383 (595)
.-+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+++..+.. +-|......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567888999998998887765 4567889999888889999999999999988865 44667777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcC
Q 007640 384 VSAEYMRERMLSFGYLPDVVTFSSLI-----------DGYCRNGQLNQGLKLCDEMK-GKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~-~~~~~p~~~~~~~ll~~~~~~g 451 (595)
..|...++.-+....+ |..+. ..+.....+....++|-++. ..+..+|+.++..|...|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8898888877654211 00000 01111222334445555554 3444578888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK-VTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
++++|.+.|+.+....+. |..+||-|..+++...+.++|+.-|.+.++. .|.- .+.-.|...|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999987643 7889999999999999999999999999986 5553 34455666789999999999998
Q ss_pred HHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 531 NKMLRI---------GCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 531 ~~m~~~---------g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
-.++.. +..++..+|.+|=.++.-.++.|-+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 876651 1122446788887777777877755543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.3e-08 Score=58.85 Aligned_cols=32 Identities=47% Similarity=0.897 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 502 RCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=57.69 Aligned_cols=31 Identities=45% Similarity=0.839 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 257 SQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
+.||..+|++||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-05 Score=70.74 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467778887776544433221 11 0 1112566677777777766664 66777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 454 NDARRFLKQLKWNDLVPKPFMYNPVIDGF-CKAGN--VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
++|...+++..+.... +...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776643 677777777764 56666 47888888888876432 6677777778888888888888888
Q ss_pred HHHHHCCCCCCHHH
Q 007640 531 NKMLRIGCAPDDIT 544 (595)
Q Consensus 531 ~~m~~~g~~p~~~~ 544 (595)
+++++.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 8887754 444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00026 Score=75.46 Aligned_cols=182 Identities=10% Similarity=0.022 Sum_probs=127.0
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 007640 137 KLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQ 216 (595)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (595)
+.+.+|-.+.+.-+--..=...|..|...|+...+...|.+.|+..-+.+ ..+..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 35555555554322222233489999999999889999999999999877 66888889999999999999999988443
Q ss_pred ccCCCC-ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007640 217 FRPGEV-TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD 295 (595)
Q Consensus 217 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (595)
.-+... ..-...|....-.|.+.++...|+.-|+...+..+ .|...|..+..+|...|++..|+++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 332210 11112233345566677888899999988888765 57888999999999999999999999877643 443
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 007640 296 IVTYNTL--ISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 296 ~~t~~~l--i~~~~~~g~~~~A~~~~~~~~ 323 (595)
. +|... .-..+..|++.+|...+..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 22222 223456677888777776654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.2e-05 Score=82.13 Aligned_cols=209 Identities=13% Similarity=0.052 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-CCc---cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG-EVT---MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWT 263 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (595)
|.++..|-..+......++.+.|.++.+++... ++. --.-+|.++++.-..-|.-+...++|++..+.. ..-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 334445555555555666666666666555432 111 112245555555555555555566666655421 12234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 007640 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC 343 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 343 (595)
|..|...|.+.+++++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++.+....-+-...+......+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555566666666666666666666532 1234455555566666666656666666555432200011222223333334
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007640 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP 400 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (595)
+.|+.+.+..+|+..+... +--...|+..++.-.+.|+.+.+..+|++++..++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555566655665555432 2334455555555555555555555665555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=81.03 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGF 377 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 377 (595)
.-..+...+.+.|-...|..+++++. .|..+|.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 33566777888899999999888765 4667788889999999999988888773 68888888888877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDAR 457 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 457 (595)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888777765432 22222333344788888888888776654 445677888888888888999988
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 458 RFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.|..-....+ .+...||.+-.+|.+.|+-.+|...+++..+.. .-+...|...+....+.|.+++|++.+.++..
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88888776542 357789999999999999999999999988876 33555666666677888999999988888876
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=82.94 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=179.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007640 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
+|-...-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+..+. +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788889999999999998874 4667888999999999999999888884 6899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+......-+++|.++.+..... .-..+.......+++.++.+.|+.-.+.+. .-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 98888777889999998876433 112222223347899999999998777653 3567898999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
+.|.+.|...... .| +...||.+-.+|.+.|+-.+|...+++..+.+ .-+-..|...+....+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999876 44 56789999999999999999999999999977 55566778888888999999999999998
Q ss_pred HHhc
Q 007640 568 ASED 571 (595)
Q Consensus 568 ~~~~ 571 (595)
+.+.
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-05 Score=69.56 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=102.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 339 ISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL 418 (595)
Q Consensus 339 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 418 (595)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777777776544433221 11 01223566677777777666653 45677777787888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007640 419 NQGLKLCDEMKGKNLSPNVYTFTILINAL-CKENR--LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888777764 45667777777654 56566 47888888888777644 6677777777888888888888888
Q ss_pred HHHHHCCCCCCHHH
Q 007640 496 AEMEEKRCKPDKVT 509 (595)
Q Consensus 496 ~~m~~~g~~p~~~~ 509 (595)
+++.+.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 8877663 344433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00015 Score=65.99 Aligned_cols=105 Identities=26% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 448 CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA----GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 523 (595)
.+..+++-|.+.++.|.+.+ +..+.+.|..++.+. +++.+|.-+|++|-++ ..|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 34444444444444444321 233444344333321 2344444444444432 344444444444444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
++|..+++..+... .-++.+...++.+-...|.
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 55555444444432 3334444444443333333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.7e-05 Score=81.22 Aligned_cols=239 Identities=11% Similarity=0.036 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH
Q 007640 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIV-TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT 336 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 336 (595)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 345667788888888888888888888866643 34433 333333355555554444433
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG 416 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 416 (595)
.++.......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 22333333344444444444454432 344566677777778888888888888877765 44677777777777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
++++|..++.+.+.. +...+++.++.++|.++....+. + ++.-.++.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d----------------~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-D----------------FDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-c----------------chHHHHHHH
Confidence 777777777766543 45556667777777776655432 1 222222222
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 497 EMEEK-RCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 497 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+... |..--..++-.+...|-..+++++++.+++..++.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22221 212223344444455556666777777777766654 335555556666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-05 Score=72.57 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC--HHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS---PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS--TFM 228 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 228 (595)
.....+..+...+...|++++|...|+++.+.. +.+. .++..+..++.+.|++++|...++++.+...... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 466688888889999999999999999988854 2232 4677788899999999999999999976542211 124
Q ss_pred HHHHHHHHHHc--------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 229 YNSLLNALVKQ--------NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 229 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
+..+..++... |+.++|.+.|+++.+..+. +...+..+..... .... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 55556666654 7788999999999876542 2233322221111 0000 00 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 301 TLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
.+...+.+.|++++|...++......+-.| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999876542222 3567889999999999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.6e-05 Score=67.28 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 007640 371 NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE 450 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~ 450 (595)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|..+|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666666666666655554332 12344455556666667777777777777666553 66666777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 451 NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
|+++.|..-+.+..+.... ++..+|.+...+.-.|+.+.|..++......+.. |...-..+.-.....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777766666655422 4556666666666667777777776666655322 4444555555566667777766655
Q ss_pred HH
Q 007640 531 NK 532 (595)
Q Consensus 531 ~~ 532 (595)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00031 Score=74.86 Aligned_cols=182 Identities=8% Similarity=-0.060 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 007640 172 HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKE 251 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (595)
...|+..|-+..+.. +.=...|..|...|+..-+...|.+.|++.-+.+ .-+......+.+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444433 2223456666666665556666666666665544 23455556666666666666666666332
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 252 YFRLYS-QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP 330 (595)
Q Consensus 252 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 330 (595)
.-+..+ ..-...|...--.|.+.++...|..-|+...... +-|...|..++.+|.+.|++..|.++|.+...- .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---Cc
Confidence 222111 0011112223334455566666666666555332 224556666666666666666666666665542 23
Q ss_pred CHh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 331 DVV-TYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 331 ~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+.. .-....-.-|..|.+.+|+..+....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 11112223455666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00022 Score=77.01 Aligned_cols=146 Identities=9% Similarity=0.033 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
+.+...+..|.......|..++|..+++...+. .|| ......+...+.+.+++++|+...++..... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 445666666667777777777777777776664 343 3445556666677777777777777766654 445556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
+..++.+.|++++|..+|+++...+. .+..++..+...+.+.|+.++|...|++..+. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 66666777777777777777766332 24666666777777777777777777776654 233444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00036 Score=63.63 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=136.5
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhH
Q 007640 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (595)
-+.-.|++..++..-...... +.+...-..+.++|...|...... .++.... .+.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 334456666666555444332 245555666777777777654332 3333322 3334444444444433444444
Q ss_pred HH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 245 AV-YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 245 A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
-+ ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 344444443333333333444456777788888887776521 22333333344556677777777777776
Q ss_pred hcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007640 324 FKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYL 399 (595)
Q Consensus 324 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (595)
.. .+..+.+.|..++.+ .+++.+|.-+|++|-++ .+|+..+.+-...++...|++++|..+++.......
T Consensus 165 ~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 165 QI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred cc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 43 244556655555543 35677777777777653 357777777777777777777777777777766542
Q ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 007640 400 PDVVTFSSLIDGYCRNGQL-NQGLKLCDEMKG 430 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 430 (595)
.++.+...+|-+-...|.. +...+.+.++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3455555554444444443 333344444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00013 Score=78.66 Aligned_cols=214 Identities=7% Similarity=0.064 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 333 VTYTSVISGYCKLGKMDKAT-GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
.....+=.+...-|..++|- +++.++.+ ++..........++..-+..... ....++..+..|...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i 95 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARA 95 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHH
Confidence 33444444556666666663 44444432 33444444444444433333322 235568889999999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
..+.|.+++|..+++...+.. |-+......+...+.+.+++++|....++....++. +......+..++.+.|++++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHH
Confidence 999999999999999998873 556677788888999999999999999999987743 677888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
..+|+++...+ +-+..++..+..++...|+.++|...|++.++.- .+....|+.++ +++..-..++++..
T Consensus 174 ~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 174 DACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99999999742 3357888999999999999999999999998853 45555555443 23344455555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=71.40 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
..|++++|+..++.+... .|-|+.......+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 345555555555554443 2334444444455555555555555555555544311 13344445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
++++..... +-|...|..|..+|...|+..+|..
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554432 3345555555555555555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=68.65 Aligned_cols=92 Identities=10% Similarity=-0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.+...+...|++++|...|+......+ .+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 344444455555555555555544432 244445555555555555555555555555432 224444455555555555
Q ss_pred CHHHHHHHHHHHHH
Q 007640 522 RMVEAISIFNKMLR 535 (595)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (595)
++++|+..|++.++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00019 Score=65.34 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007640 195 EFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 274 (595)
..+...+...|+-+.+..+....... .+.+....+.++....+.|++..|+..|.+.....+ +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 33344444444444444444443221 123333444455555555555555555555444332 4455555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 007640 275 GEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGI 354 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l 354 (595)
|++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++....... .-|...-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444321 1133334444444444455555555554444332 22344444444444455555555444
Q ss_pred HH
Q 007640 355 YN 356 (595)
Q Consensus 355 ~~ 356 (595)
-.
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 33
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00017 Score=78.57 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 295 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
+...+..|+..+...+++++|.++.+...... |+. ..|-.+...+.+.++..++..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 34556667777777777777777777655433 332 2233333345555554433333 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+..+....++.....+...|.+.+ -+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333444444544445555555532 234466677777777777777777777777766 55677777777777777 77
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 454 NDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
++|.+++.+.... +...+++.++.++|.++.+.. |+ +.+.-..+.+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 7777777665543 555567777777777777652 22 222223333333
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007640 534 LRI-GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 534 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
... |..--..++.-+...|.+.+++++++.+++.+++..+.+.....
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 332 33344556667778899999999999999999998876655433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=63.39 Aligned_cols=95 Identities=8% Similarity=-0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK 484 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 484 (595)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....+. .++..+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555555666666666666555543 34555555555556666666666666666555442 245555555555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007640 485 AGNVDEANVIVAEMEEK 501 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~ 501 (595)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.012 Score=62.84 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=116.8
Q ss_pred HhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-
Q 007640 131 KRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA- 209 (595)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~- 209 (595)
-++++.+.|+...+-.....+ +|..+...+-..|.+.++.++|..+|+..... -|+......+..+|++.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 344777777766654433322 58889999999999999999999999998876 4668888888888888887754
Q ss_pred ---HHHHHHhccCCCCccCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 007640 210 ---AKGLLSQFRPGEVTMSTFMYNSLLNALVKQN----------NADEAVYMFKEYFRLY-SQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 210 ---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g 275 (595)
|.++++...+ .+..+=++++.+...- -..-|.+.++.+++.+ .--+..-...-...+...|
T Consensus 130 Qkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 130 QKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 5555654333 3444444555444331 1234556666666544 2222333333444556778
Q ss_pred CHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 276 EVKKAFEFFY-DMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 276 ~~~~A~~~~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++-.++...+
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8888888883 33333223344444455666666667766666666665544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.8e-05 Score=64.83 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++.++.+ +.+...+..+..+|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34444444555555555555555554432 2244444555555555555555555555554433 334444445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|.+.++++.+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HcCCHHHHHHHHHHHHHhcc
Confidence 55555555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.01 Score=59.73 Aligned_cols=376 Identities=12% Similarity=0.128 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL 267 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 267 (595)
|-|..+|..||+-+... ..+++.+.++++... .+-+...|..-|..-.+.++++....+|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999988655 999999999999864 46677889999999999999999999999987653 456667666
Q ss_pred HHHHHhc-CCHH----HHHHHHHHHh-hCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCCC--
Q 007640 268 IQGLSRI-GEVK----KAFEFFYDMG-SFGCSPD-IVTYNTLISG---------LCRVNEVARGHELLKEVKFKSEFS-- 329 (595)
Q Consensus 268 i~~~~~~-g~~~----~A~~~~~~m~-~~g~~p~-~~t~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~-- 329 (595)
+..-.+. |+.. ...+.|+-.. +.|+.+- -..|+..+.. |....+++...+++.++.... +.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-m~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-MHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-cccH
Confidence 6644332 2222 2222333222 3343322 1223333322 223345666677777765321 00
Q ss_pred ----CCHhhHHHHHHHH-------HhcCChhHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHhcC
Q 007640 330 ----PDVVTYTSVISGY-------CKLGKMDKATGIYNEMNS--CGIKPSAVT---------------FNVLIDGFGKVG 381 (595)
Q Consensus 330 ----p~~~~~~~ll~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~g 381 (595)
.|-..|..=|+.. -+...+..|.++++++.. .|+..+..+ |..+|. +-+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcC
Confidence 0111222222211 233456778888888753 343322222 333332 11221
Q ss_pred CHH---------HHHHHHHH-HHhCCCCCCHHHH-H----HHHHHHHHcCC-------HHHHHHHHHHHhhCCCCCCHHH
Q 007640 382 NMV---------SAEYMRER-MLSFGYLPDVVTF-S----SLIDGYCRNGQ-------LNQGLKLCDEMKGKNLSPNVYT 439 (595)
Q Consensus 382 ~~~---------~A~~~~~~-m~~~g~~p~~~~~-~----~li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~ 439 (595)
-+. ...-.+++ +.-.+..|+.... . ..-+.+...|+ .+++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112222 2223334433211 1 11123334444 4455666666554432334444
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007640 440 FTILINALCKEN---RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILII 515 (595)
Q Consensus 440 ~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~ 515 (595)
|..+.+.=-..- ..+.....++++...-...-..+|-.++....+..-++.|..+|.++.+.+..+ ++..+++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 544443221111 355666666666554333234578888998889999999999999999988777 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
-+|. ++.+-|.++|+--++. +..++......++.+...|+-..|+.+|++.++.
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7765 7889999999987663 3455666678888999999999999999999988
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.016 Score=61.76 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=142.4
Q ss_pred hHHHHHHhc--CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 125 NSLEVIKRL--DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI 202 (595)
Q Consensus 125 ~~~~~l~~~--~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (595)
.+..++..+ ++-..|++-..-..++.+-.+...++.++ .+.+.|+.++|..+++.....+ ..|..|+..+-..|.
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYR 88 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHH
Confidence 444555555 34455666555554444333333333333 3468899999998888877765 448888999999999
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C-----
Q 007640 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG-E----- 276 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~----- 276 (595)
..++.++|..+|++.... .|+......+..+|++.+.+.+-.++=-++.+.-+ .+...+=+++..+.+.- .
T Consensus 89 d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccc
Confidence 999999999999998765 45677777788888888877654444444433322 34444445555444332 1
Q ss_pred ----HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007640 277 ----VKKAFEFFYDMGSFGCSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 277 ----~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
..-|.+.++.+.+.+-+. +..-.-.-...+-..|++++|++++..-....-..-+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 224555666666443111 111122223344567889999988843222221223334445667778888999999
Q ss_pred HHHHHHHHHCC
Q 007640 352 TGIYNEMNSCG 362 (595)
Q Consensus 352 ~~l~~~m~~~g 362 (595)
.++-.++.+.|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 99988888876
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0026 Score=57.72 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh
Q 007640 275 GEVKKAFEFFYDMGS---FG-CSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMD 349 (595)
Q Consensus 275 g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 349 (595)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+..+-+-.+-+.-... ..+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchh
Confidence 456677777666652 23 4445443 344445555677778888888777655311222222222 2234567788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007640 350 KATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 350 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
+|+++|+.+.+.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887766 556666666565666666666777666666554 35577788888888888888888888888776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC
Q 007640 430 GKNLSPNVYTFTILINALCKEN---RLNDARRFLKQLKWND 467 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~ 467 (595)
-.. |.++..+..+...+.-.| +.+.+.+++.+..+..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 653 444445555555544333 3555666666666544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.002 Score=63.99 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007640 376 GFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLND 455 (595)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 455 (595)
.+...|++++|+..++.++... +-|+.......+.+.+.++.++|.+.++.+.... +........+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 4567788999999999988762 3345555666788899999999999999998773 3336667778889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 456 ARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 456 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|+.+++....... .|+..|..|.++|...|+..+|..-..+ ++...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 9999998887764 4888999999999999988887665444 34567899999998888877
Q ss_pred C
Q 007640 536 I 536 (595)
Q Consensus 536 ~ 536 (595)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=58.97 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=135.5
Q ss_pred HhcCChhHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 343 CKLGKMDKATGIYNEMNS---CG-IKPSAVT-FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
+...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...- +-+...-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 345678899999888864 33 4455543 4556667778889999999988887753 2222222222233456789
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
+++|.++++.+.+.+ |.|..++-.=+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.--+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999998886 667777776666677778877888777776654 456888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMKG---RMVEAISIFNKMLRIG 537 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g 537 (595)
+.-.. +-+...+..+...+...| +..-|.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 88652 224555566766665544 5667888888888743
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=61.12 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 199 SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
..+...|++++|...++.+...+ +.+...+..+...+.+.|++++|..++++..+.++ .+...+..+...+...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHH
Confidence 33333344444444443333322 22333333334444444444444444443333321 22333333333344444444
Q ss_pred HHHHHHHHHh
Q 007640 279 KAFEFFYDMG 288 (595)
Q Consensus 279 ~A~~~~~~m~ 288 (595)
+|...|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00037 Score=60.11 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILI 514 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li 514 (595)
.|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+...+....|+ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 46777777777777776542211 22334455677788888888888888887652222 12344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
..+...|++++|+..++..... ......+...++.|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888664322 344556777888888888888888888775
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.014 Score=60.23 Aligned_cols=348 Identities=13% Similarity=0.114 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHhcCChHHHHHHHHhccCCCCc
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVS----------SCIRAGKCDAAKGLLSQFRPGEVT 223 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~~~~~~~~ 223 (595)
|-+..|..|.......-.++.|...|-+... .+.......|-. .-+--|++++|+++|-.+.++++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-
Confidence 5556666666666555555555555544332 111111111111 11123666666666666554322
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQP----DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY 299 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (595)
.+..+.+.|++-...++++. .|... -...|+.+...+.....+++|.+.|..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 34445555655554444332 11111 133566666666666666666666654321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK 379 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 379 (595)
...+.++.+...+++-+.+.+.+ +.|....-.+..++...|.-++|.+.|-+-- .|. ..+.+|..
T Consensus 826 e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVE 890 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHH
Confidence 12455555555555555544443 3344556667778888888888887764432 121 34556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCCHHHHH
Q 007640 380 VGNMVSAEYMRERMLSFGYLPDVVTF--------------SSLIDGYCRNGQLNQGLKLCDEMKGK----NLSPNVYTFT 441 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~ 441 (595)
.++|.+|.++-++..- |.+.+. .--|..+.+.|+.-.|.+++.+|.+. +.++-..--.
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 7777777766654332 221111 11233445566666666666666433 3333222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.++.++. ..+..++.+-.+.....|...+... +...|-..++.++.+..-.- .....|..|..-....|
T Consensus 967 YVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg---AEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 967 YVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG---AEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh---HHHHHHHHHHHHHHHhc
Confidence 2222221 1222333333333333333222111 12222233333333322110 12344455555566678
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 007640 522 RMVEAISIFNKMLR-IGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 522 ~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~ 555 (595)
..+.|++.--.+.+ ..+-|...+|..|.-+-+..
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 88888776555444 34566677776665554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00044 Score=69.14 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
....|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445566666778888888888888765 33 44557777777788888888888888652 336666666667788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..++++.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+--.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888999999999888753 445568888999999999999998888876643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00069 Score=58.43 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN---VYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPV 478 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 478 (595)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ....-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444443 3566666666666665542 222 12233344555666666666666666665542221 1233445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
...+...|++++|+..++..... ......+......+...|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666666777776666553322 223445555666666777777777666653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=48.95 Aligned_cols=33 Identities=39% Similarity=0.861 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS 366 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~ 366 (595)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666777777777777777777766666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=48.69 Aligned_cols=33 Identities=45% Similarity=0.784 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD 295 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (595)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777766666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00044 Score=53.90 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666666777777777777776552 2234556666677777777777777777776643 3344566677777777
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 007640 555 GGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 555 ~g~~~~A~~~~~~~~~~~ 572 (595)
.|++++|...++++.+..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 777777777777766543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=65.61 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 007640 372 VLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN 451 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g 451 (595)
.|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444445555666666666655542 33 22334555555555555665555555432 334444444445555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
+++.|.++.+++....+ .+-.+|..|..+|...|+++.|+..+..+-
T Consensus 249 ~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 56666666655554431 133455556666666666666655555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=4e-05 Score=47.27 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007640 262 WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294 (595)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (595)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.7e-05 Score=46.96 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 365 (595)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00055 Score=68.72 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=79.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 329 SPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC--GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 329 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+.+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555666666666666677777777776654 111222344577777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE 450 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~ 450 (595)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776666566666665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=54.58 Aligned_cols=100 Identities=16% Similarity=0.035 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCK--PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNSLI 549 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~ 549 (595)
++..++..+.+.|++++|.+.|.++.+.... .....+..+...+.+.|++++|...|+.+.... .+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555556666666666555543110 012334445555566666666666666655431 011134455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 550 SCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 556666666666666666665544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.9e-05 Score=57.41 Aligned_cols=82 Identities=26% Similarity=0.331 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 485 AGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47788888888888776331 2344555578888888888888888877 3322 1223444456778888888888888
Q ss_pred HHHHH
Q 007640 564 IMQRA 568 (595)
Q Consensus 564 ~~~~~ 568 (595)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00066 Score=52.86 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
|..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555556666666666666655543 3333445555555555555555555555554432 2233444555555555
Q ss_pred cCCHhHHHHHHHHHHH
Q 007640 239 QNNADEAVYMFKEYFR 254 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~ 254 (595)
.|+.+.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=55.49 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+...+...|++++|.++|+-+...... +..-|-.|..++-..|++++|+..|..+.... +.|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 333444555555555555555544211 33444455555555555666666665555544 3445555555555555666
Q ss_pred HHHHHHHHHHHHhc
Q 007640 558 PNEAFRIMQRASED 571 (595)
Q Consensus 558 ~~~A~~~~~~~~~~ 571 (595)
.+.|++.|+.++..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0021 Score=52.96 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLV--PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK--PDKVTFTILI 514 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li 514 (595)
++..++..+.+.|++++|.+.+..+...... .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555666666666666666543311 11234555666666666666666666666543211 1134455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.++...|+.++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=66.87 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007640 433 LSPNVYTFTILINALCKENRLNDARRFLKQLKWN--DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF 510 (595)
Q Consensus 433 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 510 (595)
.+.+......+++.+....+++.+..++.+.... ....-+.+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666677766666544 11122334457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 511 TILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
+.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555556655545455444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=51.80 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=39.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 444 INALCKENRLNDARRFLKQLKWNDL-VPKPFMYNPVIDGFCKAG--------NVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 555555555555554331 1233455555666556666666666665
Q ss_pred HHHH
Q 007640 515 IGHC 518 (595)
Q Consensus 515 ~~~~ 518 (595)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=63.00 Aligned_cols=129 Identities=9% Similarity=0.080 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINA-LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554322 1112222222222 11123344455555544433 222344444444555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 483 CKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+.++.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554433 11111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=57.84 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666667777888888887777765443222 3567777777777777777777777777652 22445556666
Q ss_pred HHHHhcCCH
Q 007640 515 IGHCMKGRM 523 (595)
Q Consensus 515 ~~~~~~g~~ 523 (595)
..+...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 666666653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.11 Score=50.90 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=129.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
....+.+..++.+|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-++..- -....+.-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 3345667777888888888888875 44566666677777777888777766655544321 111122223333333344
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG-CSPDIVTYNTLI-SGLCRVNEVARGHELL 319 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li-~~~~~~g~~~~A~~~~ 319 (595)
..+|.+.++.- ..| ....++..++...... -+|.-.++..+- .++...|++++|..+-
T Consensus 133 ~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 44444444310 001 1112222222222111 112223332221 2333445555555554
Q ss_pred HHHHhcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------------HHHHHHhcCCHH
Q 007640 320 KEVKFKSEFSPDVVTYTSVISG--YCKLGKMDKATGIYNEMNSCGIKPSAVTFNV-------------LIDGFGKVGNMV 384 (595)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-------------ll~~~~~~g~~~ 384 (595)
-.+.+.. ....+..++.+ +.-.++.+.|...|++.+..+ |+...-.. -.+-..+.|++.
T Consensus 193 ~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 4444322 11122222222 223445555555555555432 33222111 112335566666
Q ss_pred HHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 385 SAEYMRERMLSF---GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 385 ~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
.|.+.+.+.+.. ...++...|.....+..+.|+.++|+.-.++..... +.-...|..-..++...++|++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666543 223344455555555666666666666666655442 0011122222333444566666666666
Q ss_pred HHHhC
Q 007640 462 QLKWN 466 (595)
Q Consensus 462 ~~~~~ 466 (595)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 65544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.076 Score=51.93 Aligned_cols=277 Identities=13% Similarity=-0.036 Sum_probs=158.8
Q ss_pred HHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK 279 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (595)
.+.+..++.+|+..+...++.. +.+..-|..-+..+...|++++|..-.+.-++... -......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHHHHH
Confidence 3445556666666666666654 33444555455555666667666655555444321 112222223333444444444
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHH
Q 007640 280 AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSV-ISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~l~~~m 358 (595)
|.+.++ +...| ....++..++.+.....-+|.-..|..+ ..++.-.|++++|...--..
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444443 11111 1122233333332222122333444433 34566789999999887777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHHcCCHHHHHHHH
Q 007640 359 NSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTF-------------SSLIDGYCRNGQLNQGLKLC 425 (595)
Q Consensus 359 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------~~li~~~~~~g~~~~A~~l~ 425 (595)
++.+ ..+....-.--.++.-.++.+.|...|++.+..+ |+...- ..=.+-..+.|++.+|.+.|
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 6643 1222222222234456678899999999888764 443221 11223346789999999999
Q ss_pred HHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007640 426 DEMKGK---NLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 426 ~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
.+.+.. +..|+...|........+.|+.++|+.--++....+.. -...|..-..++...+++++|.+-+++..+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998765 45567777888888888999999999998888755411 12233333445556688999999999887653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=51.51 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYS-QPDTWTFNILIQGLSRIG--------EVKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666665 566666666666555432 233456666667666677777777766
Q ss_pred HHHHHh
Q 007640 303 ISGLCR 308 (595)
Q Consensus 303 i~~~~~ 308 (595)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=43.63 Aligned_cols=29 Identities=48% Similarity=1.033 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCG 362 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g 362 (595)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=43.80 Aligned_cols=29 Identities=38% Similarity=0.717 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFG 291 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (595)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666665555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.012 Score=61.82 Aligned_cols=67 Identities=18% Similarity=0.042 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
+...|..+...+...|++++|...++++++.. |+...|..++..+...|+.++|.+.++++..-.+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33445555444445566666666666665543 45555666666666666666666666666555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.11 Score=54.16 Aligned_cols=207 Identities=11% Similarity=0.086 Sum_probs=113.7
Q ss_pred ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007640 223 TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL-YSQ--------PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
.|.+..|..|.+.....-.++.|...|-+.... |++ .+...-.+=+. .--|++++|.++|-+|..+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 356667777777666666777777666554331 110 00000011111 22477888888887775432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 294 PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 294 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
..|..+.+.|++-...++++.-.....-..-...|+.+...+.....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 245556667777666666554221110111235677777777777778887777765321 1134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 374 IDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRL 453 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 453 (595)
+.++.+..++++.+.+...+.+ |....-.+.+++...|.-++|.+.+-+-- .| ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 5556666666665555544432 44455566667777777777766553321 11 2345556666677
Q ss_pred HHHHHHHHHH
Q 007640 454 NDARRFLKQL 463 (595)
Q Consensus 454 ~~A~~~~~~~ 463 (595)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7776665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=63.01 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=84.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
-...+...|++++|+.+++++++.+.. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999987744 68889999999999999999999999999874 3367788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 523 MVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
+++|+..|++.++.. |+......+
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999999854 444443333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=49.75 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
....+..-+...|++++|.++|+.+...++. +..-|-.|.-++-..|++++|+..|........ -|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344444556677777777777777666533 455666666677777777777777777766653 36666667777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007640 519 MKGRMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (595)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00094 Score=49.03 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG-MPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 572 (595)
+..+|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.++++++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45667777777788888888888888887764 445667777777888887 6888888888777643
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.033 Score=48.24 Aligned_cols=131 Identities=13% Similarity=0.063 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHH
Q 007640 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PKPFMYNP 477 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 477 (595)
.|++..--.|..++.+.|+..+|...|.+....-+.-|......+.++....+++..|...++.+.+.... -++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666655444555566666666666666666666666665544211 01223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
+.++|...|++..|..-|+..... -|+...--.....+.++|+.++|..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 555666666666666666666554 3333333333333455555555544333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.003 Score=61.08 Aligned_cols=132 Identities=13% Similarity=-0.060 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLK----WNDLV-PKPFMYNPVIDGFCKAGNVDEANVIVAEME----EKRC-KPDKV 508 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~-~p~~~ 508 (595)
.|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666677777776655422 11211 123456666777777777777777776643 2221 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLR----I-GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+.-+|...|.-...++.|+.++.+-+. . +..-....+.+|..+|...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566666666677777777765443 1 2223455677777777777777777777665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0045 Score=62.08 Aligned_cols=92 Identities=10% Similarity=-0.085 Sum_probs=65.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567777778888777777765 5566677777777777777777777777776654 34566677777777777777
Q ss_pred hHHHHHHHHHHHcC
Q 007640 243 DEAVYMFKEYFRLY 256 (595)
Q Consensus 243 ~~A~~~~~~m~~~~ 256 (595)
++|+..|++.++..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.057 Score=50.85 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY---NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG 270 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 270 (595)
....+.+.|++++|.+.|+.+.... +-+.... -.++.++.+.+++++|...+++.++..+......|-..+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334445566666666666655432 1122222 23455556666666666666666665543333333333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.077 Score=49.97 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRI--GCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+..-|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.++......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4555688899999999999999873 4445566777888999999999999998776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.026 Score=59.24 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh
Q 007640 399 LPDVVTFSSLIDGYCRN-----GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE--------NRLNDARRFLKQLKW 465 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 465 (595)
+.+...|..++.+.... +..+.|..+|++..+.. |-....|..+..++... .++..+.+.......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44556666666554322 12556666777666653 33334444443333221 123334444444333
Q ss_pred C-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 466 N-DLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 466 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
. ....++..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|...+++....+ |...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 2 123356778777777777899999999999998874 688888999999999999999999999888753 44444
Q ss_pred H
Q 007640 545 V 545 (595)
Q Consensus 545 ~ 545 (595)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0032 Score=58.82 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=78.8
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
+-+.+.++|.+|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 45677888889999998888876 6778888888888889998888888888887754 334668888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILI 268 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li 268 (595)
+|++.|++.++. .|+..+|-.=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 888888888774 45655554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0076 Score=53.39 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 440 FTILINALCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
+..+...+...|++++|...+++.......+ ...++..+...+...|++++|.+.+++..+.. +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444444445555555555555554332111 12345555555555555555555555555431 11233334444444
Q ss_pred H-------hcCCHHHHHHHHHH
Q 007640 518 C-------MKGRMVEAISIFNK 532 (595)
Q Consensus 518 ~-------~~g~~~~A~~~~~~ 532 (595)
. ..|++++|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 3 45555544444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.065 Score=51.95 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred HHHhc-CCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHH-HHHHH
Q 007640 376 GFGKV-GNMVSAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS-----PNVY-TFTIL 443 (595)
Q Consensus 376 ~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----p~~~-~~~~l 443 (595)
.|-.. |++++|...|++..+. +... -...+..+...+.+.|++++|.++|++....-.. .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5666666666555431 1000 1234455566667777777777777766543211 1111 12223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC--CCC--HhhHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 007640 444 INALCKENRLNDARRFLKQLKWNDL--VPK--PFMYNPVIDGFCKA--GNVDEANVIVAEME 499 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~ 499 (595)
+-++...|+...|.+.+++.....+ ..+ ......|+.++-.. ..++.|..-|+.+.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3344456677777777776654421 111 23344455554332 23444544444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0076 Score=53.39 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=74.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
...|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 5567888888889999999999999998663222 23578889999999999999999999998753 44456667777
Q ss_pred HHHH-------hcCCHHHHHHHHHHHH
Q 007640 550 SCLL-------KGGMPNEAFRIMQRAS 569 (595)
Q Consensus 550 ~~~~-------~~g~~~~A~~~~~~~~ 569 (595)
..+. +.|++++|...++++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 7777 7888886655555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.019 Score=50.99 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN--VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++....... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 444455555556666666666665554321111 245555566666666666666666666554322 34455555555
Q ss_pred HHHcCCHHHH
Q 007640 482 FCKAGNVDEA 491 (595)
Q Consensus 482 ~~~~g~~~~A 491 (595)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0064 Score=54.30 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 387 EYMRERMLSFGYLPDVVTFSSLIDGYCR-----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
...|+..... ..+..+|..+++.|.+ .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 4444444222 3577888888888764 36777777778888888888888888888876643 2211
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 462 QLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
|.. .+..+..-| -.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 104 --------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 --------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 111111111 12566789999999999999999999999999965443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00057 Score=52.57 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 450 ENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAIS 528 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 528 (595)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666655432 1333444466666667777777666666 22211 122333344566666777777776
Q ss_pred HHHH
Q 007640 529 IFNK 532 (595)
Q Consensus 529 ~~~~ 532 (595)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=47.00 Aligned_cols=59 Identities=24% Similarity=0.199 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 514 IIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...+...|++++|+..|+++++.. +-+...+..+..++...|++++|..+++++++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344556666666666666666543 33555666666666666666666666666665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=58.92 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 524 (595)
-+.+.+++.+|+..|.+.++..+. |+.-|..-..+|++.|.++.|++-.+..+..+ | -..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 356778888888888888877644 67777788888888888888888777777652 3 3457888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 007640 525 EAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
+|++.|++.++ +.|+-.+|-
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 88888888876 456655543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=57.01 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR-NGQLNQGLKLCDEMKGKNLSPNVYTFTILINA 446 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 446 (595)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998653 2234555555554333 56677799999998876 56788888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVPK---PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
+...++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998865 2222 248999999999999999999999998876 44544444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.03 Score=52.76 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 007640 434 SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKPDKVTF 510 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~ 510 (595)
+-|...|-.|..+|...|++..|..-|....+... +++..+..+..++.... ...++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 45666666666666666666666666666665442 35555555555544332 3445666666666553 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 511 TILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=56.36 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD----KVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPDDITVNS 547 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ 547 (595)
.|...+..+.+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+++.- -+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445556777777777777665 233 2355566666777777777777777776521 1122344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 548 LISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
++.++...|+.++|.++++++++.++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 566666777777777777777776653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.34 Score=47.46 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 007640 406 SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485 (595)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (595)
+..|.-+...|+...|.++-.+.. -|+..-|...+.+|+..++|++-.++... .-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444555566555555544431 24555566666666666666655554321 11234566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
|+..+|..++.++ + +..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666666555541 1 133344555666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.039 Score=53.48 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRS----DGHLP-NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
..|......|-..|++++|.+.|..... .+-+. -...|......|. ..++++|...+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH--------------
Confidence 3677777888888888888888887654 11010 1122333333332 22555555554443
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh----CCCCC--CHHHHHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRI-GEVKKAFEFFYDMGS----FGCSP--DIVTYNTLIS 304 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p--~~~t~~~li~ 304 (595)
+..|.+.|++..|-..+.++- ..|... |++++|.+.|++..+ .| .+ -..++..+..
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 344445555555444444432 223333 455555555544432 11 11 1223344555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC----CCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 305 GLCRVNEVARGHELLKEVKFKSE----FSPDVV-TYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+.+.|++++|.++|+++..... ...++. .|-..+-++...|++..|.+.|++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666666666666665543220 011111 122223344445666666666666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.024 Score=46.47 Aligned_cols=90 Identities=21% Similarity=0.145 Sum_probs=48.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---K-VTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~-~~~~~li~~ 516 (595)
+..++-..|+.++|+.+|++....|+... ...+-.+..++...|++++|..++++.... .|+ . .....+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34455566666666666666666654433 234455556666666666666666666544 122 1 111222234
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKML 534 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~ 534 (595)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 455666666666665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.37 Score=47.25 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINAL 447 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~ 447 (595)
.+.+..|.-+...|+...|.++-.+.. .||...|...+.+++..+++++-..+... .. .+.-|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHH
Confidence 345555666777888888877766553 47888899999999999999887776432 21 236688888999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 448 CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
.+.|...+|..+...+ .+..-+..|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988887661 235667888899999988766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=52.45 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 435 PNVYTFTILINALCKE-----NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
-+..+|..+++.|.+. |.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 3555666666665532 4455555555556666666666666666655543 2111 111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 510 FTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+.++..- .-.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 123566799999999999999999999999999977663
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.47 Score=47.26 Aligned_cols=428 Identities=12% Similarity=0.079 Sum_probs=204.9
Q ss_pred HHHhcCCchHHHHHHHHhhhCCCCCC---C-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 007640 129 VIKRLDNPKLGLKFLEFSRVNLSLNH---S-FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSS--CI 202 (595)
Q Consensus 129 ~l~~~~~~~~a~~~~~~~~~~~~~~~---~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~ 202 (595)
+|+..++-..+..+|.-.-....-.| . -..-+.++++|.- ++.+.....+..+.+.. |. ..|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--GK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--CC-chHHHHHHHHHHH
Confidence 44555666666666655422111111 1 1223455666653 34555555555554421 21 123333332 33
Q ss_pred hcCChHHHHHHHHhccCC--CCc------------cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC----CCCHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPG--EVT------------MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS----QPDTWTF 264 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~ 264 (595)
+.+.+++|.+.+..-... +.. +|...-+..++.+.+.|++.++..++++|...-. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667777777776655433 111 1122224556677777888877777777665432 3567777
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 007640 265 NILIQGLSRIG--------E-------VKKAFEFFYDMGSF------GCSPDIVTYNTLISGLCRV--NEVARGHELLKE 321 (595)
Q Consensus 265 ~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~ 321 (595)
+.++-.+.+.= . ++.+.-..++|... .+.|.......++.-..-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 76555554321 1 11111112222110 1222222233333222211 111122222333
Q ss_pred HHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 322 VKFKSEFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP----SAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 322 ~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
..... +.|+- .....|+..+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|...+.-+...
T Consensus 251 We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 32222 33332 122233333333 5555555555554432111 1245566666666777777777666665554
Q ss_pred CCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHH---HHHHcCC-HHHHHHHH
Q 007640 397 GYLPDVVTFS-------SLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNV-YTFTILIN---ALCKENR-LNDARRFL 460 (595)
Q Consensus 397 g~~p~~~~~~-------~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~---~~~~~g~-~~~A~~~~ 460 (595)
.|+...-. .+-+..|. .-+...=+.+|+......+ |. .....|+. -+-+.|. -++|..++
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23332211 12222221 1112233334444433321 11 11111221 2333444 77888888
Q ss_pred HHHHhCCCCCCHhhHHHHHH----HHHHc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHH
Q 007640 461 KQLKWNDLVPKPFMYNPVID----GFCKA---GNVDEANVIVAEMEEKRCKPDK----VTFTILIIG--HCMKGRMVEAI 527 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~--~~~~g~~~~A~ 527 (595)
+.+.+-.. -|..+-|.+.. .|..+ ..+.+-..+-+-+.+.|++|-. ..-|.+..+ +...|++.++.
T Consensus 404 k~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88776432 13333333322 22221 2333334444444566777643 334444444 34689999887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 528 SIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
-.-.-..+ +.|++.+|..++-++....++++|..++..+.-
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 66555554 689999999999999999999999999987654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.032 Score=51.07 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC-----HHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS-----TFMYNS 231 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 231 (595)
.+.+.+++.+...|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+.+.+..-..+ ..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 356677778888888888888888888866566777777778877888888888888886644322222 222233
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
....+.-.+++..|...|+++...+. .|....|.-.-+..-.|+..+|++.++.|.+. .|...+.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33445556677777777877776654 45666665555556667778888888877753 4555444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=42.96 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCCHHHH
Q 007640 364 KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN---LSPNVYTF 440 (595)
Q Consensus 364 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~ 440 (595)
.|++..-..|..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 455555555666666666666666666666554444555566666666666666666666666655442 22332 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
..+...|...|+...|+.-|+.....- |+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 334555566666666666666665432 33333333344455556555554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0025 Score=46.60 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=25.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555442 11444444555555555555555555555554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.072 Score=43.71 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 270 GLSRIGEVKKAFEFFYDMGSFGCSPD--IVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555444443322 12233344444445555555555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.34 Score=44.60 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH---
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI--- 303 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--- 303 (595)
.+-+.++..+.-.|.+.-.+.++.+..+..++.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777778888888888888887777788888888888888888888888888766433333444443333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 304 --SGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 304 --~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
..|.-.+++.+|...+.++...+ +.|+..-|.-.-+..-.|+..+|++.++.|++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445667777777777776554 334444444444444457777888888777764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0055 Score=44.72 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
.+.|++++|+++|+.+.... |-+......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777776654 456666677777777777777777777777664
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.06 Score=50.75 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHcCCCCCHHHH
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQN---NADEAVYMFKEYFRLYSQPDTWTF 264 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 264 (595)
+-|...|-.|...|...|+.+.|...|.+..+.. ++++..+..+..++.... ...++..+|+++++..+ -|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 4455555555555555555555555555554432 234444444444444332 23344555555555443 244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 007640 265 NILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455555555555555555555553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.044 Score=53.39 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTW----TFNILIQGLSRIGEVKKAFEFF 284 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~ 284 (595)
..-+|+.|+....+.+|+..++.|. -|.. .|..|-++|.-.+++++|+++.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3567888888888999998888774 2433 4555666777777788877764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0064 Score=45.82 Aligned_cols=63 Identities=32% Similarity=0.376 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRI----GC-APD-DITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+|+.+...|...|++++|+..|++.++. |- .|+ ..++..++.+|...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 21 111 34566777777777888888877777654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0095 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555442 11344445555555555555555555555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.009 Score=44.28 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=30.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.|.+.+++++|.+.+++++..+ +.+...+.....++.+.|++++|.+.++++.+..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3455555555555555555543 33444455555555555555555555555555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.3 Score=47.15 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-.++-+.+. .+.-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444445556666666666655544 4566666666667777777666555443332 2345556666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
+.|+.+||.+++-+.-. .. -...+|.+.|++.+|.++
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 77777777777665422 11 334566666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.38 Score=44.02 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHHHhcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 007640 199 SSCIRAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (595)
..+...|++++|...|+.+.... -+....+.-.++.++.+.|+++.|...++++++..+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 33444555555555555554321 111222334455555566666666666666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.35 Score=47.94 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 370 FNVLIDGFGKVGNMVSAEYMRERMLSFG---YLPDVVTFSSLIDGYCR---NGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
...++-+|....+++...++.+.+.... +.-....--...-++.+ .|+.++|++++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556788888888888888887641 11122222234445556 78888888888886555567788888888
Q ss_pred HHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH----HHHHHH---HH-HHHCCC---
Q 007640 444 INALCK---------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD----EANVIV---AE-MEEKRC--- 503 (595)
Q Consensus 444 l~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~---~~-m~~~g~--- 503 (595)
...|-. ....++|...|.+.-+.. |+...--.++-.+.-.|... +..++- .. ..++|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 776632 112556666666554333 33322222222222333211 222222 11 112221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
..|---+.+++.++.-.|++++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122333455555556666666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=42.95 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=41.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG-RMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (595)
++..|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777766653 224556666666677776 57777777776665
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.5 Score=47.13 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHhccCCCCccCHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFV----SSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNS 231 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 231 (595)
......-+..+++...++-|+.+-.. .+ .+..+...+. ..+.+.|++++|..-|-+.... ++|+.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~----- 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE----- 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----
Confidence 34566678888999999999887654 22 3333444444 4456789999999988776653 23332
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 311 (595)
++.-|....++..-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 45566677778888888999999887 466777889999999999999888877554 2322 1123456667777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
.++|..+-..... .......++ -..+++++|++.+..|
T Consensus 479 l~~a~~LA~k~~~------he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK------HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc------CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8888776655432 233334443 4568899999998876
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.1 Score=43.88 Aligned_cols=143 Identities=16% Similarity=0.089 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 348 MDKATGIYNEMNSCGIKPSAVTF-NVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 348 ~~~A~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHH
Confidence 3444444433333 34554322 2344667788888888888888877643333 3222 22334443 2322222
Q ss_pred HH---hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 007640 427 EM---KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-GNVDEANVIVAEMEEK 501 (595)
Q Consensus 427 ~m---~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 501 (595)
+. .... +.+......+..+-...|++..|..--+..... .|....|..|.+.-... |+-.++...+.+.++.
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 22 2221 334556666666667777777776666555533 46666777666665443 7777777777777765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.75 Score=42.06 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISCLLKGG 556 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g 556 (595)
.-|=...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++. .+-+ ......++.+|.+.|
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT
T ss_pred HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhC
Confidence 3333344455555544444332 0111223456678888888888888888874 2222 245567788888888
Q ss_pred CHHHHH
Q 007640 557 MPNEAF 562 (595)
Q Consensus 557 ~~~~A~ 562 (595)
..+.|.
T Consensus 193 ~~~~a~ 198 (203)
T PF13525_consen 193 LKQAAD 198 (203)
T ss_dssp -HHHHH
T ss_pred ChHHHH
Confidence 887554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.096 Score=49.79 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=37.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHH
Q 007640 449 KENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~ 524 (595)
+.|++++|...|+.+.+..+... +..+-.+...|...|++++|...|+.+.+.-. ......+-.+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 34444444444444444321110 22344444445555555555555555543310 001222333334444555555
Q ss_pred HHHHHHHHHHH
Q 007640 525 EAISIFNKMLR 535 (595)
Q Consensus 525 ~A~~~~~~m~~ 535 (595)
+|..+|++.++
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.11 Score=44.54 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDITV 545 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 545 (595)
+...++..+...|++++|..+.+.+.... +.|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455555566666666666666666552 23555666666666666666666666665543 4666666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=43.86 Aligned_cols=367 Identities=13% Similarity=0.140 Sum_probs=213.5
Q ss_pred HHHcCCchHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHhccC----CCCccCHH
Q 007640 166 LCEMGLHDSVQVVFDYMRSD--GHLP------------NSPMIEFFVSSCIRAGKCDAAKGLLSQFRP----GEVTMSTF 227 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 227 (595)
.-+.+.++.|++.+..-.+. +..+ |-..=+..+.++...|++.++..+++++.. +...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 45889999999988876653 2222 112224567788899999999999988764 34557899
Q ss_pred HHHHHHHHHHHcC--------C-------HhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 007640 228 MYNSLLNALVKQN--------N-------ADEAVYMFKEYFRLY------SQPDTWTFNILIQGLSRIG--EVKKAFEFF 284 (595)
Q Consensus 228 ~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g--~~~~A~~~~ 284 (595)
+|+.++-.+.+.= . ++.+.-..++|.... ..|....+..++....-.. +..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 9998777766531 1 122222222332211 1233333333333332221 122223333
Q ss_pred HHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 285 YDMGSFGCSPDIVT-YNTLISGLCRVNEVARGHELLKEVKFKSEF----SPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 285 ~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
......-+.|+-.. ...++..+.. +.+++..+-+.+.... . ..=+.++..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344445555332 2334444443 5666666655554321 1 1124578888899999999999999998887
Q ss_pred HCCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---HHHHHcCC-HHHHHH
Q 007640 360 SCGIKPSAVTF-------NVLIDGFGKV----GNMVSAEYMRERMLSFGYLPDVV-TFSSLI---DGYCRNGQ-LNQGLK 423 (595)
Q Consensus 360 ~~g~~p~~~~~-------~~ll~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~-~~~~li---~~~~~~g~-~~~A~~ 423 (595)
-. .|+...- ..+-+..+.. -+...-..+|+......+ |.. .-..|+ .-+.+.|. -++|+.
T Consensus 326 ~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 326 IL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred hc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 64 3544321 1122222311 123334555666555432 221 222222 34556666 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHH--HHHcCCHHH
Q 007640 424 LCDEMKGKNLSPNVYTFTILI----NALCK---ENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDG--FCKAGNVDE 490 (595)
Q Consensus 424 l~~~m~~~~~~p~~~~~~~ll----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~--~~~~g~~~~ 490 (595)
+++.+.+-. +-|...-+.+. .+|.+ ...+..-..+-+-+.+.|++|- ...-|.|.++ +...|++.+
T Consensus 402 LLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 402 LLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 999887642 33443333322 23322 2345555556666677787764 3345555544 456799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS 547 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 547 (595)
+.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..++++
T Consensus 481 c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 481 CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 8766555554 5799999999999999999999999999865 788777764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.1 Score=45.50 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+.+--+..+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++-+.+.. +.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344555555666666666666665554 35666666666677777777666655544421 23344455666
Q ss_pred HhcCCHHHHHHHHHHH
Q 007640 553 LKGGMPNEAFRIMQRA 568 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~ 568 (595)
.+.|+.+||.+++-+.
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 7777777777666544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.06 Score=46.24 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
+...|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44677777777777777666543 455566666667777777777777776654432 2444455566677777777777
Q ss_pred HHHHHHHHH
Q 007640 527 ISIFNKMLR 535 (595)
Q Consensus 527 ~~~~~~m~~ 535 (595)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777777665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.8 Score=43.04 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCG---IKPSAVTFNVLIDGFGK---VGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
..++-+|....+++..+++.+.|.... +.-....--...-++.+ .|+.++|..++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556888888888888888887641 11122222233445556 788888888888866555567888888887
Q ss_pred HHHH----H-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HH-HHhCC---CC
Q 007640 410 DGYC----R-----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN----DARRFL---KQ-LKWND---LV 469 (595)
Q Consensus 410 ~~~~----~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~----~A~~~~---~~-~~~~~---~~ 469 (595)
..|- . ....++|...|.+.-+.. ||.++--.++..+...|... +..++- .. +.+.| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 7663 2 123667777777665442 44433222333333344322 222322 11 11222 22
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+...+..++.+..-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45556678888888888888888888888866
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.098 Score=48.72 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI-GCAP-DDITVNSLI 549 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~l~ 549 (595)
.|+.-+..+ +.|++..|..-|...++... .-....+-.|..++...|++++|..+|..+.+. +-.| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 56778888888888887621 112334556788888999999999999888873 2222 346778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 550 SCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
.+..+.|+.++|...|++..+.++....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 8899999999999999999988875543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=43.04 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEK----RC-KPD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777777777777777776532 11 112 44567777777788888888888777654
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.74 Score=37.77 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+....+..+..+..+|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-++|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33445556666666777777777776665533 6667777777777777777777777777776655
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.055 Score=46.52 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHHH
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-----SFGCSPDIVTYN 300 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~ 300 (595)
+...++..+...|+++.|..+.+.+....+ -|...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456677778888999999999999988775 588899999999999999999999988774 357888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=46.74 Aligned_cols=217 Identities=9% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCCHhHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHH
Q 007640 229 YNSLLNALVKQNNADEAVYM---------FKEYFRLYSQPDTWTFNILIQGLSRIGEVK--KAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~---------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~ 297 (595)
+.+-+..|...|.+++|.++ ++.+... ..+...++..=.+|.+.++.. +...-+++|.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34444556667777776542 1111111 123444555666777766543 4555567778888778776
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS-----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV 372 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 372 (595)
.. ...++-.|++.+|-++|.+--... .-...|+- +..-+...|..++-..+.++-.+. ..+..-=.+
T Consensus 637 Ll---A~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePka 708 (1081)
T KOG1538|consen 637 LL---ADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKA 708 (1081)
T ss_pred HH---HHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHH
Confidence 53 344556788888888887643211 01111111 122233333333333333222110 011111122
Q ss_pred HHHHHHhcCCHHHHHHHHH------HHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 373 LIDGFGKVGNMVSAEYMRE------RMLSFGYL---PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL 443 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 443 (595)
....+...|+.++|..+.. .+.+-+.+ .+..+...+...+-+...+.-|.++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 3344455666666544321 11111111 23334444444455555666677777666433 235
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007640 444 INALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~ 464 (595)
++.....++|++|..+-+...
T Consensus 780 VqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhheeecccchHhHhhhhhCc
Confidence 566667777777777766554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.3 Score=42.52 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 367 AVTFNVLIDGFGKVGNMVSAEYMRERMLSFG-YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 367 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
...|...++...+..-++.|..+|-+..+.| +.+++..++++|..++ .|+..-|..+|+--... ++.+..--...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4566777777778888888899999888887 5677888888888776 47778888888876554 2333333345566
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+...++-+.|..+|+..+.+- ..+ ...|..+|+.-..-|+...+..+=++|.+. -|...+.....+-|.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6777888888888888544321 111 457888888888888888888888888765 445444444444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.18 Score=41.85 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
|..++..++.++++.|+++....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566777777777777777777665542 21111000 0000 0112345678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 007640 516 GHCMKGRMVEAISIFNKMLR-IGCAPDDITVNSLISCLL 553 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 553 (595)
+|+.+|++..|+++++...+ .+++.+..+|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888776 567777888887777443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.79 Score=39.51 Aligned_cols=87 Identities=8% Similarity=-0.160 Sum_probs=46.3
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|..+|.-+...+ +.+..-+..|..++-..+++++|...+......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666554443 22333344455555555666666666655544432 2444445555556666666666
Q ss_pred HHHHHHHHH
Q 007640 492 NVIVAEMEE 500 (595)
Q Consensus 492 ~~l~~~m~~ 500 (595)
..-|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.17 Score=41.93 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 007640 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISG 341 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 341 (595)
..|+..+..+++.+|+..+++..|.++++.+....+++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555554444445555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.073 Score=39.28 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|.+.+++++|.++++.+.+.+ +.+...+......+...|++++|...|++.++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444332 11233333334444444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.6 Score=42.10 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWND-LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTF-TILI 514 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li 514 (595)
..+|...+++-.+...++.|..+|-+..+.+ ..++..++++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666776667777788888888877776 4566777777777665 46677777777765443 2444444 4555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRIGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.-+...++-+.|..+|+..+.. +..+ ..+|..+|+.-.+-|+...+..+=+++.+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 5666777778888888765542 2222 4577777777777788877777666665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.83 Score=47.47 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH---------HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCC
Q 007640 259 PDTWTFNILIQGLSRIGEVKKAFEFF---------YDMGSFGCSPDIVTYNTLISGLCRVNEVA--RGHELLKEVKFKSE 327 (595)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~~~~~~~ 327 (595)
+-.+.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=++|.+..+.. +...-+++++.++
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg- 630 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG- 630 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC-
Confidence 34455666677788889888887652 111110 112233444555666655532 3333345555554
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhC--CC-C
Q 007640 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN-----VLIDGFGKVGNMVSAEYMRERMLSF--GY-L 399 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-----~ll~~~~~~g~~~~A~~~~~~m~~~--g~-~ 399 (595)
-.|+... +...++-.|++.+|-++|.+--..+ .-...|+ -...-|...|..++-..+.++-.+. .+ +
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 3465443 2334455677777777765432111 0001111 1223334444444433333322110 01 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH------HhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007640 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDE------MKGKN---LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP 470 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 470 (595)
|. +....+...|+.++|..+.-+ +.+-+ -..+..+...+...+.+...+.-|.++|..|-.
T Consensus 706 Pk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----- 775 (1081)
T KOG1538|consen 706 PK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----- 775 (1081)
T ss_pred cH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----
Confidence 21 223344455666666554321 11111 122344555555555666677777788776642
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKV-----------TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...+++.....+++++|..+-+..-+. .||+. -|.-.-.+|.+.|+..||.++++++..
T Consensus 776 ----~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ----LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ----HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 234667777888999998888776553 34432 133334567777777777777777654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=52.43 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK----VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 35778999999999999999999999999887 4553 458999999999999999999999999853 22 22
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhcC
Q 007640 546 NSLIS--CLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 546 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
..+.. .+....+.++..++++.+.+-+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 21111 1122234456666676666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.1 Score=39.20 Aligned_cols=208 Identities=10% Similarity=0.070 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..-..+|....++++|...+.+..+. ...+...| . ..+.++.|.-+.+++.+. +--+..|+--...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-h------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-H------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-H------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 446777778888899999998888777641 12222222 1 223345566666666543 2234456667778
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CC--CCCCHHHHHHHHHHHHhcC
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS---FG--CSPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~t~~~li~~~~~~g 310 (595)
|..+|..+.|-..+++.-+. ...-++++|+++|++... .+ ...-...+...-..+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888888877777665431 122344555555554431 00 0001122333344555556
Q ss_pred CHHHHHHHHHHHHhc-C--CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCH
Q 007640 311 EVARGHELLKEVKFK-S--EFSPDV-VTYTSVISGYCKLGKMDKATGIYNEMNSCG---IKPSAVTFNVLIDGFGKVGNM 383 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~-~--~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~ 383 (595)
++++|-..+.+-..- . .--++. ..|-..|-.+.-..++..|.+.+++--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666554444332110 0 001111 234444555556667777777777744422 122445566666554 45666
Q ss_pred HHHHHHH
Q 007640 384 VSAEYMR 390 (595)
Q Consensus 384 ~~A~~~~ 390 (595)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.19 E-value=4.7 Score=41.98 Aligned_cols=183 Identities=13% Similarity=0.055 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS--PNVYTFTIL 443 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~l 443 (595)
+..+|..-+.--.+.|+.+.+.-++++..-. +..=...|-..+.-....|+.+-|..++....+--++ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666677677778888777777776532 1111234444444455557777777766655443322 222222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHH--
Q 007640 444 INALCKENRLNDARRFLKQLKWNDLVPK-PFMYNPVIDGFCKAGNVDEAN---VIVAEMEEKRCKPDKVTFTILIIGH-- 517 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~l~~~m~~~g~~p~~~~~~~li~~~-- 517 (595)
+ .-..|++..|..+++.+.+.- |+ ...-..-+....+.|+.+.+. +++....+... +......+..-+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR 448 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence 2 234578888888888877654 33 222222334445667777776 33333332211 222222222222
Q ss_pred ---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 518 ---CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGG 556 (595)
Q Consensus 518 ---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 556 (595)
.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2367888888888888774 4667777777777665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.5 Score=38.62 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+...|+++.|++.|.+....-+. .+..||.-..++.-.|+.++|++=+++..+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44455555555555554433221 3445555555555555555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.46 Score=47.86 Aligned_cols=67 Identities=9% Similarity=-0.130 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS---PMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
+.+...|+.+..+|.+.|++++|+..|++.++.. +-+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3577899999999999999999999999988875 3333 35888999999999999999999998774
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.85 Score=46.98 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=88.8
Q ss_pred HHHHcCCHhHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 235 ALVKQNNADEAVYMFK--EYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEV 312 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 312 (595)
...-.|+++++.++.+ ++.. .-...-.+.++..+.+.|..+.|+++-.+-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445677777665554 2211 1124456777777777888887777654321 133445567777
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRER 392 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 392 (595)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.
T Consensus 335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 7777664433 3566788888888888888888887776542 44566667777777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 393 MLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 393 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
....| -++....++.-.|++++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66654 234444455556777776666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.47 Score=46.71 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007640 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
.++..+.-+|.+.+++.+|+...++.+..+ ++|......-..+|...|+++.|+..|+.+++..+. |..+-+.|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456667777777788888888777777765 667777777777777778888888888877766532 444555555554
Q ss_pred HHcCCHH-HHHHHHHHHHHC
Q 007640 483 CKAGNVD-EANVIVAEMEEK 501 (595)
Q Consensus 483 ~~~g~~~-~A~~l~~~m~~~ 501 (595)
-+..... ...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 4444333 336666666543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.7 Score=39.88 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m 252 (595)
++.+|...|+.+.|..++..+
T Consensus 174 la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.93 E-value=2 Score=36.38 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=68.0
Q ss_pred CchhHHHHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 122 SPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSC 201 (595)
Q Consensus 122 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 201 (595)
+++.+...+...+.+.....|.++...... .+...++.++..|++.+. .+..+.+.. ..+......+++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHH
Confidence 344444444444566677777777655432 455677777777776532 333333331 12233445566667
Q ss_pred HhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 202 IRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
.+.+.++++..++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777777766532 11123333333 5666666665541 24555666555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.61 Score=45.96 Aligned_cols=61 Identities=18% Similarity=0.074 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
+++.|.-++.+.+++..|+...++.+..++ +|+-..---..++...|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445555556666666666666666655543 4555554555566666666666666666654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.75 Score=43.97 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK---NLSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
-..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ++|...+...++.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456667777777777664 4556777777777788888887777777777654 22323333344445556778888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK---RCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
+|++.-++..+.+. .|.-.-.++...+--.|++.++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88888877776653 35666666777777777888887776554322 000011223333334455677888888887
Q ss_pred HHH
Q 007640 532 KML 534 (595)
Q Consensus 532 ~m~ 534 (595)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.2 Score=44.53 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 007640 450 ENRLNDARRFLKQLKWNDLVPKPFMYNP-VIDGFCKAGNVDEANVIVAEMEEKR--C-KPDKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~ 525 (595)
....+.|.++++.+...- |+...|.. -.+.+...|++++|.+.|++..... . ......+--+.+.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345666777777766542 44433322 2344556677777777777654311 0 1123344555666777777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhc
Q 007640 526 AISIFNKMLRIGCAPDDITVNSLIS-CLLKGGMP-------NEAFRIMQRASED 571 (595)
Q Consensus 526 A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~~ 571 (595)
|...|.++.+.. ..+..+|.-+.- ++...|+. ++|.++++++..-
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888777777643 334444443332 44566666 7777777666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.4 Score=39.10 Aligned_cols=165 Identities=9% Similarity=0.082 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007640 403 VTFSSLIDGYCRNGQLN---QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+++.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 35566677777666543 455566666443 2323455555566666677888888888888765321 223444444
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH---HHhc------CCHHHHHHHHHHHHH-CCCCCCHHHH
Q 007640 480 DGFCK--AGNVDEANVIVAEMEEKRCKPDKVTF--TILIIG---HCMK------GRMVEAISIFNKMLR-IGCAPDDITV 545 (595)
Q Consensus 480 ~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~---~~~~------g~~~~A~~~~~~m~~-~g~~p~~~~~ 545 (595)
..+.. ......|...+..+....+.|....| ..++.. .... ++.+....+++...+ .+.+.+..+.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44421 12345566666666555455544311 111111 1111 124445555554333 2334444443
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHHH
Q 007640 546 NSL-------ISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 546 ~~l-------~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.++ +..+.+.+++++|.++++-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333 334567889999999998655
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.4 Score=37.68 Aligned_cols=201 Identities=17% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-H
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN-A 446 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~-~ 446 (595)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444444444444443321 112233333444444444444455555554444332111 111111111 4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 007640 447 LCKENRLNDARRFLKQLKWNDL--VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRM 523 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 523 (595)
+...|+++.|...+........ ......+......+...++.+.+...+.+..+.. .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 4455555555555555433111 0122222333333444555555555555555441 11 234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 524 VEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 524 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.|...+....... +.....+..+...+...|..+++...+++..+..
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56655555555432 1113333333333334455555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.5 Score=42.56 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLR----IGCAPD-DITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
.++...|+.-+|.+..++..+ .|-.+. ......+.+.|...|+.+.|..-++.
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 344445555555555554443 221111 12233445555555555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=4 Score=37.93 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDD---ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+....+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 445678899999999999999985 33333 4455677899999999999997666655443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.5 Score=41.10 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
..+|.++.+...+.+. .|+.....+..+..-.++++.|..+|++....+ || ..+|-.....+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555555553 255555555555555566666666666666542 32 3344444444555666666666666
Q ss_pred HHHH
Q 007640 532 KMLR 535 (595)
Q Consensus 532 ~m~~ 535 (595)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.3 Score=37.18 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
..+.|++++|.+.|+.+..+-+.. ...+--.|+.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345666677766666666542211 2344555666666666666666666666655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.7 Score=39.12 Aligned_cols=280 Identities=16% Similarity=0.124 Sum_probs=149.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHhcCCH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQG--LSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS----GLCRVNEV 312 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~----~~~~~g~~ 312 (595)
.|+-..|.++-.+-.+. +..|....-.|+.+ -.-.|+.+.|.+-|+.|.. |+.|-..=++ .--+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666655544321 22344444344332 3345788888888888864 2233222222 22356777
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---cCCHHHH
Q 007640 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG-IKPSAVT--FNVLIDGFGK---VGNMVSA 386 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~--~~~ll~~~~~---~g~~~~A 386 (595)
+.|...-+..-... +.-...+...+...|..|+++.|+++.+.-++.. +.++..- -..|+.+-.. ..+...|
T Consensus 171 eaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 77777777665543 1223567778888888888888888887765532 2333321 1222222111 1234445
Q ss_pred HHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 387 EYMRERMLSFGYLPDVVTFS-SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 387 ~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
...-.+..+. .||.+--. .-..++.+.|+..++-.+++.+-+....|+. .. +..+.+.|+ .+..-+++...
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHH
Confidence 5444444432 45533222 2235677778888888888877776433332 21 112233443 23333333221
Q ss_pred C-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 007640 466 N-DLVP-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-KGRMVEAISIFNKMLRI 536 (595)
Q Consensus 466 ~-~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 536 (595)
. .++| +..+...+..+-...|++..|..--+..... .|....|..|...-.. .|+-.++..++-+.++.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1222 3455566666666777777776655555443 5666666666655443 37777777777776654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.3 Score=43.31 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 370 FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV------VTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYT 439 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 439 (595)
+..++...+=.||-+.+.+.+.+..+.+-.-.+ -.|..++..++. ..+.+.|.+++..+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555666667777777777766553211111 233344433332 44677788888888766 345444
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 440 FTI-LINALCKENRLNDARRFLKQLKWND---LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 440 ~~~-ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
|.. -...+...|++++|.+.++...... .......+--+...+.-..++++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 433 3345566788888888888654311 11223345556666777788888888888888753 224445544443
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHH
Q 007640 516 GH-CMKGRM-------VEAISIFNKMLR 535 (595)
Q Consensus 516 ~~-~~~g~~-------~~A~~~~~~m~~ 535 (595)
+| ...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 346666 777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.8 Score=42.72 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 007640 188 LPNSPMIEFFVSSCIRA-----GKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTW 262 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 262 (595)
..|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+..-... .+|++..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F--------- 132 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVF--------- 132 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHH---------
Confidence 45666776666665433 4455555666667777777777777777766544321111 1121111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 311 (595)
-.|- .+-+-++.++++|...|+.||..+-..|+.++.+.+.
T Consensus 133 ------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111 1224577888889888999998888888888887765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.6 Score=43.51 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=67.2
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
....-.++++++.++.+.-.-.. .-.....+.+++.+-+.|..+.|+++... + ..-.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 33444555666555553111000 01133455555555555655555554421 1 11233444556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 555444332 3455566666666666666666655554431 3344444555555555555554444
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 324 FKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 324 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
..+ -++....++.-.|+.++..+++.
T Consensus 401 ~~~-------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERG-------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred Hcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 13333333344455555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.6 Score=37.55 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.6
Q ss_pred hcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
+.|++++|...|+.+.... -+-...+.-.++-++-+.+++++|+...++..+..+......|-.-|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 5666666666666665431 122344555566666777777777777777777665545555555555555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=7.5 Score=39.64 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=57.7
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHhccCCCCccC
Q 007640 147 RVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI-RAGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 147 ~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
+.-..++.|+..|..-+..+-+.+.+.+.-.+|..|.... +.++..|.....-.. ...+++.|..+|....+.+ +.+
T Consensus 96 ~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pds 173 (568)
T KOG2396|consen 96 RATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDS 173 (568)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCC
Confidence 3445567799999988888777777999999999998854 455555544444333 3344888889988887765 334
Q ss_pred HHHHHHHH
Q 007640 226 TFMYNSLL 233 (595)
Q Consensus 226 ~~~~~~li 233 (595)
+..|....
T Consensus 174 p~Lw~eyf 181 (568)
T KOG2396|consen 174 PKLWKEYF 181 (568)
T ss_pred hHHHHHHH
Confidence 55554433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=7.9 Score=41.53 Aligned_cols=279 Identities=13% Similarity=0.031 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHhcC--
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLIS----G-LCRVNEVARGHELLKEVKFK---SEFSPDVVTYTSVISGYCKLG-- 346 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~----~-~~~~g~~~~A~~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g-- 346 (595)
...|+++++...+.| +......+.. + +....+.+.|+.+|+..... .-..-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888887766 3333322222 2 34567899999999888651 001113445667777777643
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCH
Q 007640 347 ---KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC----RNGQL 418 (595)
Q Consensus 347 ---~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~ 418 (595)
+.+.|..+|....+.| .|+...+-..+..... ..+...|..+|......|.. ..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 5677999999988887 4555544444333333 34678899999999888743 22222222222 23478
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH---HH----cCCHHH
Q 007640 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID-GF---CK----AGNVDE 490 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~---~~----~g~~~~ 490 (595)
+.|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.+.. ...+-...+. .. .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 89999999988887 3332222223333333 7777777777777766644 2222222211 11 11 125566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEAF 562 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 562 (595)
+..++.+....| +......+...|.. ..+++.|...+......+ ....-.+...+-. .. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 777777776665 55555666655544 235788888888777654 4444444444422 23 68888
Q ss_pred HHHHHHHhcCC
Q 007640 563 RIMQRASEDQN 573 (595)
Q Consensus 563 ~~~~~~~~~~~ 573 (595)
++++.+.+.+.
T Consensus 530 ~~~~~~~~~~~ 540 (552)
T KOG1550|consen 530 RYYDQASEEDS 540 (552)
T ss_pred HHHHHHHhcCc
Confidence 88888877543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=4.3 Score=38.56 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=93.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678999999999999998865 4456677889999999999999999999987643222222222334555555555
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC
Q 007640 243 DEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g 310 (595)
.+...+-.+.-. .| |...-..+...+...|+.++|++.+-.+..... .-|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 554444444443 34 666666777888888888888877666653211 123333444444444333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.78 Score=42.78 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----------------CHHHHHH
Q 007640 435 PNVYTFTILINALCK-----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG----------------NVDEANV 493 (595)
Q Consensus 435 p~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~ 493 (595)
-|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 356667776666643 3456666667777888888888888888887764432 1223455
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 494 IVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
++++|...|+.||..+-..++.++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 5555555555555555555555554444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.9 Score=34.40 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
...+..+.+.|+-+.-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444445555555555555544322 3444444455555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=3.9 Score=39.34 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=115.5
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC---CCccCHHHHHHHHHHHHHcC
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG---EVTMSTFMYNSLLNALVKQN 240 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g 240 (595)
..+-..|++.+|-..++++.+.- |-|...+...=.+|.-.|+.+.-...++++... +++....+...+.-++..+|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34456788888888899888753 778888888889999999999999999988654 33434444456666777899
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 007640 241 NADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD---IVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~ 317 (595)
-+++|.+.-++..+.+. -|.++-.++.+.+--.|++.++.++..+-...=-..+ ...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999888764 6888999999999999999999998775432100000 1111122223456688999999
Q ss_pred HHHHHH
Q 007640 318 LLKEVK 323 (595)
Q Consensus 318 ~~~~~~ 323 (595)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 987644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.95 E-value=14 Score=41.92 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
.|.+..+.+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++....-. -..+-..|+..+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 3444445555667777777666654322 23566777778888888877766532100 1112256667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
..++.-+|-++..+.... | .-.+..+++...+++|+.+....
T Consensus 1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 778777777777766543 1 22333455555667776655443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.81 Score=37.41 Aligned_cols=94 Identities=15% Similarity=-0.050 Sum_probs=69.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHH---HHHHHHHHc
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYN---SLLNALVKQ 239 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~li~~~~~~ 239 (595)
.-++...|+++.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-+.+...+. .-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 346788899999999999888754 5677789999999999999999988888876643233333333 334456677
Q ss_pred CCHhHHHHHHHHHHHcCC
Q 007640 240 NNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~~~ 257 (595)
|+-+.|..-|+...+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888777664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.4 Score=37.01 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHHHhcCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007640 198 VSSCIRAGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
.....+.|++++|.+.|+.+...- -+-...+.-.|+.+|.+.+++++|...+++.++..+......|-..+.+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334446777777777777776541 123345556677888888888888888888888776544555666666655543
Q ss_pred C
Q 007640 276 E 276 (595)
Q Consensus 276 ~ 276 (595)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.066 Score=34.98 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 545 VNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+..+..+|.+.|++++|+++++++++..+.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 334444444455555555555554444444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.58 E-value=16 Score=41.44 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCCHhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007640 329 SPDVVTYTS----VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVT 404 (595)
Q Consensus 329 ~p~~~~~~~----ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 404 (595)
.|+...+.. ....+...+++++|.-.|+..-+ ..-.+.+|-..|+|.+|..+..++... .|...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 355544443 34444556777777777665422 123567788888888888888876542 22222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 405 --FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 405 --~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
-..|+.-+...++.-+|-++..+.... ..-.+..|++...+++|..+....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 256777788888888888888776543 123444566666777777665443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.55 E-value=7.5 Score=37.53 Aligned_cols=17 Identities=35% Similarity=0.124 Sum_probs=10.6
Q ss_pred HHHcCCHHHHHHHHHHH
Q 007640 482 FCKAGNVDEANVIVAEM 498 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m 498 (595)
+.+.+++++|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34567777777776643
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.53 E-value=4.1 Score=34.47 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222233221 112223334555555555
Q ss_pred CHHHHHHHHHHH
Q 007640 487 NVDEANVIVAEM 498 (595)
Q Consensus 487 ~~~~A~~l~~~m 498 (595)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.3 Score=41.35 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 440 FTILINALCKENRLNDARRFLKQLKWNDLV-P-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..|..++...|++++|...|..+.+.-.. | -+..+--|.....+.|+.++|...|++..+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333444444444444444444444432111 0 1234444444444455555555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=6.2 Score=35.84 Aligned_cols=201 Identities=17% Similarity=0.080 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSC-GIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID- 410 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~- 410 (595)
..+......+...+.+..+...+...... ........+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 33444444444555555555544444331 112333334444444444455555555555554432221 111111112
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 411 GYCRNGQLNQGLKLCDEMKGKNL--SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666543210 0122333333333556667777777777666543221355666667777777777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 489 DEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
+.|...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777665 232 334444444444666677777777777664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=5.4 Score=34.63 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=25.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
...|.+++.....+.+...+-+.....-..|.-+-.+.|++..|.++|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344555555555444443332222233334444445556666666666655543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.11 E-value=9.8 Score=38.98 Aligned_cols=59 Identities=12% Similarity=-0.014 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
..+..++.+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555556667777777777776643211 123345566667777777777777766653
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=4.2 Score=41.28 Aligned_cols=88 Identities=8% Similarity=-0.034 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.+..+|.++.++..+.+- -|......+..+..-.++++.|..+|++....+ +....+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346678888888888863 488888888888888889999999999999865 444566777777778899999999999
Q ss_pred HHHHhcCCCC
Q 007640 566 QRASEDQNLQ 575 (595)
Q Consensus 566 ~~~~~~~~~~ 575 (595)
+++.+-.+..
T Consensus 396 ~~alrLsP~~ 405 (458)
T PRK11906 396 DKSLQLEPRR 405 (458)
T ss_pred HHHhccCchh
Confidence 9988876644
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.82 E-value=7.8 Score=35.71 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
.|..-..+|....++++|...+.+..+. ...|...| -....++.|.-+.+++.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666666777766666555421 11111111 1122234444455555443 112234555556666
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC--CCCHhhHHHHHHHHHHcCCH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW---NDL--VPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~--~p~~~~~~~li~~~~~~g~~ 488 (595)
.+|..+-|-..+++.-+. ...-++++|++++++... .+- .--...|..+...+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555543221 112233334444333211 000 00112334444555566666
Q ss_pred HHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007640 489 DEANVIVAEMEE----KRCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLRIG---CAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 489 ~~A~~l~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
++|-..+.+-.. ..--++. ..|-..|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 665444433211 1111122 234455555666677888888877754422 133456677777776 4577777
Q ss_pred HHHHH
Q 007640 561 AFRIM 565 (595)
Q Consensus 561 A~~~~ 565 (595)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 76654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.81 E-value=6.7 Score=34.87 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT-----ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
+...+..++++++|..-++..... |....+. .|.......|.+|+|+.+++.....+ -.......-++.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 345567778888888887776643 2222232 23445667888888888887665432 2334455567788
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 007640 553 LKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~~~ 573 (595)
...|+.++|+.-|+++++...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 888888888888888888763
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=6.4 Score=34.21 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..|.++......+.+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444433333222222333344444445555555555554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.39 Score=31.23 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFF 197 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 197 (595)
+|..+...|.+.|++++|+++|+++.+.. |-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 56666777777777777777777777754 4455444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.34 E-value=12 Score=36.49 Aligned_cols=130 Identities=14% Similarity=0.214 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCC-
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR--V----NEVARGHELLKEVKFKSEF--SPDVVTYTSVISGYCKLGK- 347 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~- 347 (595)
+++...+++.|.+.|+.-+..+|-+..-.... . .....|.++++.|++..++ .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776666543322222 1 1245667777777765532 2233344444433 2222
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007640 348 ---MDKATGIYNEMNSCGIKPSAV--TFNVLIDGFGKVGN--MVSAEYMRERMLSFGYLPDVVTFSSL 408 (595)
Q Consensus 348 ---~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 408 (595)
.+.+..+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245556666666655544322 22222222211111 22445556666666665555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.96 E-value=22 Score=38.85 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
.+-+.+.|++++|..-|-+-+..- .| ..++.-|....+..+-..+++.+.+.|.. +...-..|+++|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 344567888888877665544311 12 12344444444555555556666655543 334445566777776666
Q ss_pred hHHHHHHHH
Q 007640 243 DEAVYMFKE 251 (595)
Q Consensus 243 ~~A~~~~~~ 251 (595)
+.-.+..+.
T Consensus 448 ~kL~efI~~ 456 (933)
T KOG2114|consen 448 EKLTEFISK 456 (933)
T ss_pred HHHHHHHhc
Confidence 555444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.39 Score=29.66 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 544 TVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888888888888888888844
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.68 E-value=22 Score=38.24 Aligned_cols=180 Identities=12% Similarity=0.003 Sum_probs=85.7
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHH-----HHHcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNA-----LVKQNNADEAVYMFKEYFR-------LYSQPDTWTFNILIQGLSRI 274 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~ 274 (595)
...|.+.++...+.| +......+..+ +....+.+.|+.+|+...+ .+ +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777776655 22222222222 2234577778777777765 33 222444555555553
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH--hcC
Q 007640 275 G-----EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR-VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYC--KLG 346 (595)
Q Consensus 275 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g 346 (595)
. +.+.|+.++....+.| .|+....-..+..... ..+...|.++|...-..+ .++...+..++.... -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCC
Confidence 2 4555777776666555 2333322222221111 234566777776666544 122221111111111 223
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
+.+.|..++++..+.| .|....-...+..+.. ++++.+...+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 5666666666666665 2322222223333333 55555555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.67 E-value=5.3 Score=38.92 Aligned_cols=238 Identities=11% Similarity=0.029 Sum_probs=131.6
Q ss_pred CchhHHHHHHhcCCchHHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHHcCCchHHHHHHHHH----HHCC-CCCCHHH
Q 007640 122 SPLNSLEVIKRLDNPKLGLKFLEFSRVNLSLN---HSFKTYNLVMRSLCEMGLHDSVQVVFDYM----RSDG-HLPNSPM 193 (595)
Q Consensus 122 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~~-~~~~~~~ 193 (595)
+|.+....++....++.+..+..|.+.-..+. --..+|-.+..+.++.|.+++++..--.- .+.. ...--..
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666777764311111 12346777788889999888876543222 1110 0111234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC-CCcc---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-----CCCCHHHH
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPG-EVTM---STFMYNSLLNALVKQNNADEAVYMFKEYFRLY-----SQPDTWTF 264 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~ 264 (595)
|..+.+++-+.-++.+++.+-..-... |..+ .-...-++..+....+.++++++.|+...+.. .-.....|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 555666666666666666665543321 1111 12333446667777778899998888876532 11234467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCC
Q 007640 265 NILIQGLSRIGEVKKAFEFFYDMGS----FGCSPDIVTYN-----TLISGLCRVNEVARGHELLKEVKFK----SEFSPD 331 (595)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~-----~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~ 331 (595)
-.|-..|.+..|.++|.-+..+..+ .++.--..-|. .+.-++...|+...|.+.-++..+- +.-..-
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7888888888888888776665532 22221111222 2233455667766666666554321 211122
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
......+.+.|...|+.+.|+.-|+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3344556677778888888777776643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.7 Score=40.04 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS-----FGCSPDIVTYN 300 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 300 (595)
..++..++..+...|+++.+...++++....+ -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34667788888888888888888888888765 5788888888999999988888888887753 67778777666
Q ss_pred HHHHH
Q 007640 301 TLISG 305 (595)
Q Consensus 301 ~li~~ 305 (595)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.93 E-value=21 Score=36.70 Aligned_cols=58 Identities=5% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+..++.+.|+.++|++.++++.+..+..........|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3334445555555555555555432111122344455555555555555555555543
|
The molecular function of this protein is uncertain. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=21 Score=36.63 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 363 IKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 363 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
-+.|.....+++..++...++.-.+.+..+|...| -+...|..++.+|... ..+.-..+|+++.+..+ .|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 35677788889999999999999999999999875 5678888999999888 67888899998888753 34444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLV-----PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-RCKPDKVTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~ 516 (595)
|...|.+ ++..++..+|..+..+=++ .-...|.-|.... ..+.|....+..++.+. |...-.+.+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 8888888888887654322 1123444444322 24677777777777643 444445566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
|....++++|++++....+.+ .-|..+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888889999999999888865 55666655666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.61 E-value=3 Score=39.65 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 007640 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE-----KRCKPDKVTFTILI 514 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~li 514 (595)
+..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 333444444444444444444444444422 344444555555555555544444444432 34444444444333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=15 Score=33.30 Aligned_cols=180 Identities=18% Similarity=0.153 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 380 VGNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARR 458 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 458 (595)
.|-+.-|..-|.+.... .|+ +..||.+.-.+...|+++.|.+.|+...+....-+-...|.-+ ++.-.|+++-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 34444444444444443 343 4678888888888888888888888887775332322222222 3345688888877
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 459 FLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANV-IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~-l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
-+...-+.+.. |+ |.+|--.+...+ +..+|.. +.++.... |..-|...|..+.- |+..+ ..+++++...
T Consensus 155 d~~~fYQ~D~~-DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPN-DP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCC-Ch--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHhh
Confidence 77666655533 22 222222222222 5566644 33444433 55666555555432 22211 2233443331
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 537 GCAPD-------DITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 537 g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
-..+ ..||--|.+-+...|+.++|..+|+-++..+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111 2466777888888888888888888776543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.44 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 530 FNKMLRIGCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 530 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
|++.++.. +-+...|..|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445443 455666777777777777777664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.71 E-value=6.5 Score=34.90 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH---H
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPD--TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN---T 301 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ 301 (595)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566677777777777777777777766543322 3345666777777777777777666654321111111111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 007640 302 LIS--GLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 302 li~--~~~~~g~~~~A~~~~~~~~ 323 (595)
... .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234566777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.1 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 544 TVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+..+..++.+.|++++|++.++++++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666667777777777777777665543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=4.9 Score=35.76 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 46677888888888887776532211 234444555667777777777777776665321 1222223344666777
Q ss_pred CHHHHHHHHHHHHHC
Q 007640 522 RMVEAISIFNKMLRI 536 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~ 536 (595)
++++|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888777764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.21 E-value=25 Score=35.02 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
.+.+..+.|+++...+........ .++...+..+... +.++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677788888855555544422 2344445544433 67788887777766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.21 E-value=5.5 Score=35.36 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK--VTFTILIIGHCMKGRMVEAISIFNKMLRIGCA---PDDITVNS 547 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ 547 (595)
..+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|......|++..+...+.++...--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667777777777777777777777766443332 23455666666777777777777666552111 12111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHh
Q 007640 548 LIS--CLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 548 l~~--~~~~~g~~~~A~~~~~~~~~ 570 (595)
... .+...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23456777777777655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.1 Score=26.89 Aligned_cols=31 Identities=26% Similarity=0.136 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 543 ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+|..++.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566677777777777777777777776543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.1 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+|..|...|.+.|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777788888888888888887543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.32 E-value=17 Score=31.81 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007640 423 KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR 502 (595)
Q Consensus 423 ~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 502 (595)
+.++.+.+.+++|+...+..+++.+.+.|++.....+ ...++.+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4445555667777777777777777777776554433 33455555444443332222 2334444444444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 503 CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 503 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
=...+..++..+...|++-+|+++.+...... .+ ....++.+-.+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11245666777778888888888776643211 11 223455666666666655555554444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=34 Score=35.24 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=129.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007640 328 FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSS 407 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 407 (595)
-..|....-+++..+.++.++.-...+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+..+ .|++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566778889999999999999999999999976 6788899999999888 66778899999988753 25555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 007640 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSP-----NVYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDG 481 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~ 481 (595)
|...|.+ ++.+.+..+|.+....-++- -...|..+...- ..+.+....+...+.+. |..--...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 89999999999887653221 122444444321 35677777777777653 333345567777788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
|....++++|++++..+.+.+-+ |.-.-..++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88899999999999999887533 44444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.90 E-value=44 Score=35.16 Aligned_cols=400 Identities=12% Similarity=0.059 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHhccCC-CCc-cCHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCI-RAGKCDAAKGLLSQFRPG-EVT-MSTFMYNSLLN 234 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~ 234 (595)
-|......=.+.|..+.+.++|++-.. +++.+...|......+. ..|+.+.....|+..... |.. .+...|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 555566666778888999999998876 45666666666555444 557777888888887653 221 24456777888
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhc------CCHHHHHHHHHHHhh----------------
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQ---GLSRI------GEVKKAFEFFYDMGS---------------- 289 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~---~~~~~------g~~~~A~~~~~~m~~---------------- 289 (595)
.-..++++.....+|+++++. |. ..|+.... .+.+. ...+++.++-.....
T Consensus 160 ~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 888888999999999998863 21 12222221 22222 123333333222211
Q ss_pred ----CCCCCCHHH--HHHHHHH-------HHhcCCHHHHHHHHHHHHhcC--CC----CCCHhhHHHHHHHHHhcCChhH
Q 007640 290 ----FGCSPDIVT--YNTLISG-------LCRVNEVARGHELLKEVKFKS--EF----SPDVVTYTSVISGYCKLGKMDK 350 (595)
Q Consensus 290 ----~g~~p~~~t--~~~li~~-------~~~~g~~~~A~~~~~~~~~~~--~~----~p~~~~~~~ll~~~~~~g~~~~ 350 (595)
.+-+.+..+ .+.+-.. +-......+....|+.-.... .+ .++..+|...+..-.+.|+.+.
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 000000000 0111111 111111222222222222111 01 2345678888888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 007640 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY-CRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~ 429 (595)
+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--++ +......+-..+ -..|+++.|..+++.+.
T Consensus 316 ~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 316 VFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99999998641 1112233444444445559999998888776654332 222222222223 34679999999999998
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCHHHHHH---HHHHHHhCCCCCCHhhHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 007640 430 GKNLSPNV-YTFTILINALCKENRLNDARR---FLKQLKWNDLVPKPFMYNPVIDGFC-----KAGNVDEANVIVAEMEE 500 (595)
Q Consensus 430 ~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~~~~-----~~g~~~~A~~l~~~m~~ 500 (595)
..- |+. ..-..-+....+.|..+.+.. ++..... | .-+....+.+.--+. -.++.+.|..++.++.+
T Consensus 394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 394 SEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred hhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 774 433 333334455667888888873 3333332 2 123333333333332 34789999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHH-H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRM---VEAISIFNKMLRIGCAPDDIT-V-NSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~-~-~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
. .+++...|..++.-+...+.. +--.-++..+......+|... + ...+.-..-.|....+.+-....+
T Consensus 470 ~-~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l 542 (577)
T KOG1258|consen 470 I-LPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDERPHL 542 (577)
T ss_pred c-CCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhchHHH
Confidence 6 566788888888877665532 223334444444333333322 2 223444444555555555443333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.54 E-value=8.4 Score=36.84 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNS----------CGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG---YLPDVV 403 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~----------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~ 403 (595)
.|.++|.....|+.-....-.+-. .|.+....+...++..-....+++.++..+-++.... ..|+.
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~- 102 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW- 102 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-
Confidence 355566666566544333323222 3445556666666666666778888888777776531 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
+-.+.++.+ -.-+.++++.++..=+..|+.||.++++.+|+.+.+.+++.+|..+.-.|....
T Consensus 103 ~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 112223322 334677888888888889999999999999999999999999888887776554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.07 E-value=22 Score=30.75 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
+.++.+++..+++.+.--.+-.+...++..++ +...|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 34455555555555544321122222222222 3455555555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.9 Score=27.21 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 542 DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..+++.|...|...|++++|..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 346777778888888888888888777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.52 E-value=22 Score=30.26 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 309 VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
.++.+++..+++.+.--.+-.+...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666654332223333343333 34566666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.5 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 545 VNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+-.++.++.+.|++++|.+.|+++++..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34556677777788888888887777665
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.78 E-value=9.9 Score=36.40 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007640 291 GCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSE--FSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAV 368 (595)
Q Consensus 291 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 368 (595)
|......+...++..-....+++.++..+-.+..... ..|+... .+.+. ++..-++++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 4444555556666555556777777777766653211 1111111 11222 233346678888877778888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
+++.+|+.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887776666543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.24 E-value=43 Score=32.60 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCC-
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR--IG----EVKKAFEFFYDMGSFGC---SPDIVTYNTLISGLCRVNE- 311 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~- 311 (595)
+++.+.+++.|.+.|...+..+|-+..-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 33455677777777766666555443332222 22 24567778888875431 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 312 ---VARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGK--MDKATGIYNEMNSCGIKPSAVTFNVLI 374 (595)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~ll 374 (595)
.+.++.+++.+...+-.+.|. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345566666666533222333 233333332222222 457888999999999888877776554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.16 E-value=40 Score=32.22 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cC-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCK-LG-KMDKATGIYNEMNS-CGIKPSAVTFNVLIDGFGKVGNMVSAEY 388 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g-~~~~A~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 388 (595)
+.+|+++|+....++.+--|......+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 345555555322212233444444445444433 11 12222222233322 2235666666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 389 MRERMLSF-GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 389 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+++..... +...|...|..+|......|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77666554 4445666777777777777776655555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.07 E-value=1.4 Score=26.80 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 007640 190 NSPMIEFFVSSCIRAGKCDAA 210 (595)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A 210 (595)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444443333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.85 E-value=11 Score=39.39 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=86.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
.|+++.|..++..+. ...-+.+++-+.+.|..++|+++- +|..- -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 456666655444432 233445666667777777766542 22211 12233456777777776
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
..+.. +..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65542 456677888888888888888877776654 33555566666776655555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+ .-.-+|...|+++++++++..-
T Consensus 724 -~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 -NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 22 2223455677777777776543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.67 E-value=29 Score=30.30 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=46.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007640 389 MRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL 468 (595)
Q Consensus 389 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 468 (595)
.++.+.+.+++|+...|..+++.+.+.|++.... .+...++-+|.......+-.+. +....+.++--+|.++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-
Confidence 3444445556666666666666666666544332 3333444444443333332221 22233333333332210
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 469 VPKPFMYNPVIDGFCKAGNVDEANVIVAEM 498 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 498 (595)
...+..+++.+...|++-+|.++.+..
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 013455556666666666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.55 E-value=18 Score=32.51 Aligned_cols=75 Identities=16% Similarity=0.013 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 487 NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI---GCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 487 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
.-++|.+.|-++...+.--++...-.+. .|....+.++++.++.+..+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777777777665554544444444 444467888888888887762 33677888888888888888888775
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=75 Score=34.81 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=52.8
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 141 KFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
.+..|....++.+.....=..-+..+.+.+++.+.+.++.. .+.+...-.....+....|+.++|....+.+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44444544444444433444444555666666665553211 1445555566677777777776666666655433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHh
Q 007640 221 EVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
| ...+..++.++..+.+.|.+.
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCCC
Confidence 3 234456666777666666443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.28 E-value=41 Score=31.62 Aligned_cols=204 Identities=14% Similarity=0.152 Sum_probs=122.8
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC
Q 007640 290 FGCSPDIVTYNTLISGL-CRVNEVARGHELLKEVKFKSEFSPD--VVTYTSVISGYCKLGKMDKATGIYNEMNSC---GI 363 (595)
Q Consensus 290 ~g~~p~~~t~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---g~ 363 (595)
.+-.||+..-|..-.+- .+..+.++|+.-|.++..-.+-+.+ -.+...++....+.|++++..+.|.+|... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566665544322211 2345789999999988765432222 234567788899999999999999988541 11
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---
Q 007640 364 K--PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF-----GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL--- 433 (595)
Q Consensus 364 ~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--- 433 (595)
. -+..+.+.++.-.+...+.+....+++.-.+. +-..--.|-..|...|...+.+.+..++++++...-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 34556777887777777777666666543321 0011112335667777788888888888888765411
Q ss_pred -CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHH-----HHHcCCHHHHHHH
Q 007640 434 -SPN-------VYTFTILINALCKENRLNDARRFLKQLKWN-DLVPKPFMYNPVIDG-----FCKAGNVDEANVI 494 (595)
Q Consensus 434 -~p~-------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~l 494 (595)
..| ...|..-+..|...++-.+...++++.... ...|.+..... |+- ..+.|++++|..-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhH
Confidence 112 245666677777777777777777765432 23455544433 332 3456777777443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.27 E-value=29 Score=29.96 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=27.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+.++.+++..++..+.-..+. .+..-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 455666666666666544322 1222222233345666777777777776554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.22 E-value=12 Score=29.00 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
++.+-+..+...++.|++.+..+.+++|.+..++.-|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444445555555555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.07 E-value=27 Score=36.68 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYC 413 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 413 (595)
..+.++..+.+.|..++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445555566666666665532 222111 122345666776666655432 4556777777777
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
..+++..|.+.|....+. ..|+-.+...|+-+....+-....+.|. .|...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 777777777766655432 3344455555665554444444444442 2333344555666666666
Q ss_pred HHHHH
Q 007640 494 IVAEM 498 (595)
Q Consensus 494 l~~~m 498 (595)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 65443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.91 E-value=3.8 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887765
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.66 E-value=4.8 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+|..+...+...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555566666666666666666665553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=13 Score=37.79 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=81.1
Q ss_pred HHHHHHcCCHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007640 409 IDGYCRNGQLNQGLKLCDE-MKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
|.-....|+.-.|-+-+.. +.....-|+....... .+...|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3334456777666554444 4333333444333333 345678888888877665432 12344577788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITV 545 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 545 (595)
+++|..+-+.|....+. +...........-..|-+|++...|++..... +|...-|
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~ 428 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGW 428 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-Chhcccc
Confidence 88888888888766554 44544444444455677888888888877655 3433333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.38 E-value=42 Score=30.53 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYS 257 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (595)
+.+||-|.--+...|+++.|.+.|+...+.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 44556666666666666666666666655443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.31 E-value=4.2 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 543 ITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
.+|..+...|...|++++|.+.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888888888888888888876543
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.52 E-value=9 Score=30.02 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 456 ARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 456 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
..+-+..+...++.|++.+..+.+++|.+..++.-|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.50 E-value=64 Score=32.06 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP---DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
.+|..++..+.+.|.++.|...+..+...+... ++...-.-+..+...|+.++|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554422111 222333334444455555555555555444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.47 E-value=19 Score=32.41 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWN---DLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
.|...|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444433333333333333332 33444444444443322 1123444444444444444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.18 E-value=5.1 Score=38.65 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=61.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 445 NALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 524 (595)
+-|.+.|.+++|+..|........ -++.++..-..+|.+.+.+..|..--...+..+- .-...|..-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 458899999999999988775542 2788888888999999998877766655554310 01123333333334455666
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 007640 525 EAISIFNKMLRIGCAPDD 542 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~ 542 (595)
+|.+-++..++. .|+.
T Consensus 183 EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHhHHHHHhh--Cccc
Confidence 666666666653 5653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=4.4 Score=39.09 Aligned_cols=91 Identities=10% Similarity=-0.064 Sum_probs=62.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
.+-|.++|.+++|++.|....... +.++.++..-..+|.+.+++..|..-....+..+ ..-+..|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 356889999999999999877754 4488889889999999999887777666655432 11122333333333445666
Q ss_pred hHHHHHHHHHHHc
Q 007640 243 DEAVYMFKEYFRL 255 (595)
Q Consensus 243 ~~A~~~~~~m~~~ 255 (595)
.+|.+-++..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6777767666664
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.10 E-value=4.7 Score=23.91 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+...+...|++++|++.|++.++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 1e-18
Identities = 35/336 (10%), Positives = 88/336 (26%), Gaps = 8/336 (2%)
Query: 241 NADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300
+ A + + P L+Q + S
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 301 TLISGLCRVNEVARGHELLKEVK--FKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358
+++ H LL + + Y +V+ G+ + G + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 359 NSCGIKPSAVTFNVLIDGFGKVGNMV-SAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417
G+ P +++ + G+ + E E+M G + + L+ R
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNP 477
L K+ P + L+ + ++ + LK + + ++
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME 311
Query: 478 V-----IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNK 532
+ + K + + + + + + F+
Sbjct: 312 LASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSL 371
Query: 533 MLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568
+ + V L+ L E+F + R
Sbjct: 372 YPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARE 407
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.8 bits (213), Expect = 7e-18
Identities = 30/266 (11%), Positives = 81/266 (30%), Gaps = 7/266 (2%)
Query: 119 EKLSPLNSLEVIKRLDNPK----LGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDS 174
+ +P+ K L+ K + ++ L+ + FK ++ +
Sbjct: 16 KDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQM 75
Query: 175 VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234
+ D R P + + D + Q +++ +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 235 ALVKQNNADEAVYMFKEYFRLYSQ---PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFG 291
+ + A ++ + + +N ++ G +R G K+ + + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351
+PD+++Y + + R ++ A E E + + ++S + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 352 TGIYNEMNSCGIKPSAVTFNVLIDGF 377
+ + P V + L+
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 6e-08
Identities = 86/641 (13%), Positives = 176/641 (27%), Gaps = 195/641 (30%)
Query: 68 HFHGLANGGSRPFDEKEVNYRCSNEFWFVKVVCTLLLRSSYLSDTCARYLCEKLSP-LNS 126
H H + F+ E Y+ + + V +++ + + + + L+
Sbjct: 3 HHHHM------DFETGEHQYQYKD---ILSV-----FEDAFVDNFDCKDVQDMPKSILSK 48
Query: 127 LEV--IKRLDNPKLGLKFL-------------EFSRVNLSLNHSFKTYNLVMRSLCEMGL 171
E+ I + G L +F V L Y +M +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLR---INYKFLMSPIKTEQR 103
Query: 172 HDS-VQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE-VT---M-- 224
S + ++ R + N ++ VS R + L + RP + V +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 225 ---STFMYNSLLNALVKQNNADEAVYM-FKEYFR----------LYSQPD-TWT------ 263
+ + L+ V+ + ++ K L Q D WT
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 264 ------FNILIQGLSRI------------------GEVKKAFEFFYDMGSFGCSPDIVTY 299
+ + L R+ + AF C + T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-------SCKILLTTR 273
Query: 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT-SVISGYCKLGKMDKATGIYNEM 358
++ ++ H L +PD S++ Y L + + E+
Sbjct: 274 FKQVTD--FLSAATTTHISLDH--HSMTLTPD---EVKSLLLKY--LDC--RPQDLPREV 322
Query: 359 NSCGIKPSAVT--------FNVLIDGFGKVG------------NMVSAEYMRERMLSFGY 398
P ++ D + V N++ R+
Sbjct: 323 --LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 399 LPDVVTFSS-LIDGYCRNGQLNQGLKLCDEMKGKNL---SPNVYTFTI---LINALCK-- 449
P + L+ + + + + +++ +L P T +I + K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 450 -----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG-FC--------KAGNVDEANVIV 495
+ D K +DL+P P +D F + + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIP------PYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 496 AE------MEEK-------RCKPDKVTFTIL--------IIGHCMK-GRMVEAISIFNKM 533
+E+K + T+ I + K R+V AI F +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--L 552
Query: 534 LRIGCAPDDITVNSLISCLLK-------GGMPNEAFRIMQR 567
+I + + S + LL+ + EA + +QR
Sbjct: 553 PKIE----ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-04
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 15/176 (8%)
Query: 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSP-NVYTFTILINALCKENRLNDARR 458
P++ + + + + + D +++ N + + + + A R
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 459 FLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518
L Q + L + K +D A + +M + D T T L
Sbjct: 123 TLHQ--GDSLECMAMT----VQILLKLDRLDLARKELKKM--QDQDEDA-TLTQLATAWV 173
Query: 519 M----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570
++ +A IF +M C+P + +N +C + G A ++Q A +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.36 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.31 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.18 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.64 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.53 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.44 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.42 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.97 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.45 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.96 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.98 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.89 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.03 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.96 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.74 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.46 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.22 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.39 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=330.87 Aligned_cols=434 Identities=11% Similarity=0.016 Sum_probs=381.0
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007640 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
..++.+.|+.+|..+.. ..|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.
T Consensus 96 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 170 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGAL 170 (597)
T ss_dssp HTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHH
Confidence 34778889888877653 2367889999999999999999999999988654 688999999999999999999999
Q ss_pred HHHHhccCC---------------CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 007640 212 GLLSQFRPG---------------EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL--------- 267 (595)
Q Consensus 212 ~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------- 267 (595)
++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.++. +...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccch
Confidence 999964332 23456889999999999999999999999999987642 44443333
Q ss_pred -----------------------------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 268 -----------------------------IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 268 -----------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566789999999999999865 68999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
|+++.... +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus 328 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 328 TTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 99998765 4577889999999999999999999999998654 5678899999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007640 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .++.+|+.+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3468899999999999999999999999998875 56889999999999999999999999999988764 378999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEK----RCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 99999999999999999999876 66787 7899999999999999999999999999876 66899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007640 553 LKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
.+.|++++|.+.++++.+..+.....+.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999998776544433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=319.64 Aligned_cols=414 Identities=11% Similarity=-0.007 Sum_probs=363.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 578899999999999999999999999998753 67899999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRL---------------YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 9999999999999999963221 122358899999999999999999999999998753 113333
Q ss_pred HHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 299 YNT--------------------------------------LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 299 ~~~--------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
+.. ++..|.+.|++++|.++|+++... +++..+|+.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHH
Confidence 332 245566789999999999998754 488999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQ 420 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 420 (595)
+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999865 4578899999999999999999999999998653 4578899999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998763 55788999999999999999999999999998764 4788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+..+.
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 74 347899999999999999999999999999885 66787 789999999999999999999999999988765
Q ss_pred CCCccc
Q 007640 575 QLPSWK 580 (595)
Q Consensus 575 ~~~~~~ 580 (595)
....|.
T Consensus 549 ~~~~~~ 554 (597)
T 2xpi_A 549 DANVHT 554 (597)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=241.58 Aligned_cols=384 Identities=12% Similarity=0.059 Sum_probs=318.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999988865 6677778888888899999999999998887654 5678899999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKE 321 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 321 (595)
+++|+..|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999988754 466789999999999999999999999988653 22455667788888888999999999999
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007640 322 VKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD 401 (595)
Q Consensus 322 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (595)
+.... +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+
T Consensus 161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 88754 3457788999999999999999999999998864 4456778888889999999999999998887753 335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 7888889999999999999999999998874 5567888889999999999999999999988765 3478888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...|+++++.. +.+...+..+...+.+.|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999988763 3467788899999999999999999999988753 4456777788777766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=262.66 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 370 FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG---------QLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+ .+++|.++|++|...|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444333 245666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 520 (595)
+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 521 GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=263.26 Aligned_cols=187 Identities=14% Similarity=0.184 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHH
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN---------MVSAEYMRERMLSFGYLPDVV 403 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~ 403 (595)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45666777777777777777777777777777777777777777766543 567778888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 519 (595)
+.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888887777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-27 Score=237.44 Aligned_cols=369 Identities=14% Similarity=0.047 Sum_probs=324.5
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 4566788999999999999987754 45677888889999999999999999999988764 688999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998642 3356689999999999999999999999998764 3345667888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 007640 357 EMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN 436 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 436 (595)
++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...+++..... +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 998864 4467889999999999999999999999999864 3467889999999999999999999999998764 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
..++..+...+.+.|++++|.+.++++.+.++. ++.+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 889999999999999999999999999987643 67899999999999999999999999999873 5588999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
+...|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.++++++..+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999998853 56688999999999999999999999999998765443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-24 Score=223.58 Aligned_cols=412 Identities=9% Similarity=-0.037 Sum_probs=325.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4577788899999999999999999999975 689999999999999999999999999998765 5577899999999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------------------------
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------------------------- 290 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 290 (595)
+.+.|++++|...|+++.+.++ ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998775 44444445554444433333222222111100
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCCC-------CCCHhhHH
Q 007640 291 ----------GC---------SPDIVTYNTLISGLCR---VNEVARGHELLKEVKF-----KSEF-------SPDVVTYT 336 (595)
Q Consensus 291 ----------g~---------~p~~~t~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------~p~~~~~~ 336 (595)
.. +.+...+......+.. .|++++|...++++.. .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113334444444443 7999999999999876 2111 12356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG 416 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 416 (595)
.+...+...|++++|...|+++.+.+ |+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999998865 448888889999999999999999999998864 346778889999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998774 45677888899999999999999999999887653 367789999999999999999999999
Q ss_pred HHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 497 EMEEKRCK-PD----KVTFTILIIGHCM---KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 497 ~m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
++.+.... ++ ...+..+...+.. .|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98765211 11 3488889999999 999999999999998864 557788899999999999999999999999
Q ss_pred HhcCCCCCC
Q 007640 569 SEDQNLQLP 577 (595)
Q Consensus 569 ~~~~~~~~~ 577 (595)
.+..+....
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 987765433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-22 Score=212.25 Aligned_cols=407 Identities=10% Similarity=0.018 Sum_probs=299.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4467777788888888888888888888765 5677788888888888888888888888887654 4467778888888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHH-----------
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------GCSPDIVT----------- 298 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t----------- 298 (595)
+...|++++|...|+. .... |+ .....+..+...+...+|...++++... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 8888888888888863 3222 22 1222334445555556777777766432 11122111
Q ss_pred -------------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCCC-----HhhHHHHHHHHHhcC
Q 007640 299 -------------------YNTLISGLC--------RVNEVARGHELLKEVKFKSEFSPD-----VVTYTSVISGYCKLG 346 (595)
Q Consensus 299 -------------------~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g 346 (595)
...+...+. ..|++++|..+++++....+-.++ ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 111111111 124788999999998865411111 235667778888999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999885 4668888889999999999999999999988764 3467889999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 007640 427 EMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR---- 502 (595)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---- 502 (595)
++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998764 44677888999999999999999999999987753 367789999999999999999999999987642
Q ss_pred -CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 503 -CKPDKVTFTILIIGHCMK----------GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 503 -~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
.......+......+... |++++|...|+++++.. +.+..++..++.+|.+.|++++|.+.++++.+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111223344555677777 99999999999999864 567788999999999999999999999999987
Q ss_pred CCCC
Q 007640 572 QNLQ 575 (595)
Q Consensus 572 ~~~~ 575 (595)
.+..
T Consensus 492 ~~~~ 495 (537)
T 3fp2_A 492 ARTM 495 (537)
T ss_dssp C--C
T ss_pred CCCc
Confidence 6543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-22 Score=206.52 Aligned_cols=302 Identities=15% Similarity=0.084 Sum_probs=192.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 467788899999999999999999999998864 6678889999999999999999999999988765 45678888999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDT---WTFNILIQG------------LSRIGEVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
..|.+.|++++|...|+++.+..+ .+. ..+..++.. +...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999987653 233 555555433 666667777777776666432 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL----- 373 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l----- 373 (595)
+..+...|.+.|++++|.+.|+++.... +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6666666666666666666666665442 3445666666666666666666666666666532 1222223222
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 374 -------IDGFGKVGNMVSAEYMRERMLSFGYLPD-----VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT 441 (595)
Q Consensus 374 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 441 (595)
...+...|++++|...++++.+.. |+ ...|..+...+.+.|++++|+..++++.+.. +.+..++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 344444455555555554444421 22 2234444444444444444444444444331 22344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 442 ILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+..+|...|++++|...++++.+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-22 Score=204.22 Aligned_cols=339 Identities=13% Similarity=0.024 Sum_probs=175.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 176 QVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
...+..+.... +.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..++.++...|++++|...|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33333433332 4455556666666666666666666666655432 334556666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 256 YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-I---VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD 331 (595)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 331 (595)
++ .+..++..+...|.+.|++++|...|+++.+. .|+ . ..+..++..+..
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------
Confidence 43 34555666666666666666666666666543 232 2 344444332000
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
..+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +.+..++..+...
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 001111223445555555555555555432 2344455555555555555555555555554432 2244555555555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL------------INALCKENRLNDARRFLKQLKWNDLVPK----PFMY 475 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 475 (595)
|...|++++|+..|+++.... +.+...+..+ ...+.+.|++++|...++++.+.... + ...|
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 555555555555555554432 2233333333 55666666666666666666654321 1 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++++.. +-+...+..+.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 666666666666666666666666542 2255666666666666666666666666666532 23344444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=205.76 Aligned_cols=396 Identities=11% Similarity=-0.033 Sum_probs=314.5
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007640 130 IKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 130 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
+-..++.+.|+..|..+.... |+..+|..+..++.+.|++++|+..++.+.+.+ +.+..++..+..++.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 334478888888888776543 689999999999999999999999999999876 6788899999999999999999
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-----------------------------------H
Q 007640 210 AKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF-----------------------------------R 254 (595)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------~ 254 (595)
|...|+++...+ +++......++..+.+......+.+.+..+. .
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999998765 3343444444444443332222222221110 0
Q ss_pred cCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCCCC--------CHHHHHHHHHHHHhc
Q 007640 255 LYS---------QPDTWTFNILIQGLSR---IGEVKKAFEFFYDMGS-----FGCSP--------DIVTYNTLISGLCRV 309 (595)
Q Consensus 255 ~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~li~~~~~~ 309 (595)
... +.+...+..+...+.. .|++++|...|+++.+ ..-.| +..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 000 1114444445555554 8999999999999987 32122 355778888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 310 NEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYM 389 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 389 (595)
|++++|.+.++++.... |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998765 447888999999999999999999999998864 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007640 390 RERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV 469 (595)
Q Consensus 390 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (595)
++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++......
T Consensus 327 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99999864 3367788999999999999999999999998763 556788999999999999999999999998765322
Q ss_pred -CC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 470 -PK----PFMYNPVIDGFCK---AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 470 -p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 3389999999999 999999999999998864 3467888999999999999999999999999864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-19 Score=189.10 Aligned_cols=391 Identities=12% Similarity=0.005 Sum_probs=304.1
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007640 130 IKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 130 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
+...++.+.|+..|+-+....+ .++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...+...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 3344778888888877655432 578999999999999999999999999999876 6788999999999999999999
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC------CCCCHHH--------------------
Q 007640 210 AKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY------SQPDTWT-------------------- 263 (595)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~-------------------- 263 (595)
|...|+.+ ... |+ .....+..+...+....|...++++.... ..|+...
T Consensus 112 A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99999744 322 22 12223445555666778888888886531 1122221
Q ss_pred ----------HHHHHHHHH--------hcCCHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHH
Q 007640 264 ----------FNILIQGLS--------RIGEVKKAFEFFYDMGSFGCSPD--------IVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 264 ----------~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~ 317 (595)
...+...+. ..|++++|..+|+++.+. .|+ ..++..+...+...|++++|.+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 122222221 125789999999999864 344 2356777788889999999999
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 318 LLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
.++.+.... |+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 265 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999998754 668889999999999999999999999998864 4567889999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCH
Q 007640 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-----PKP 472 (595)
Q Consensus 398 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~ 472 (595)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... ...
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3356789999999999999999999999998874 566788999999999999999999999998764311 122
Q ss_pred hhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 473 FMYNPVIDGFCKA----------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 473 ~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...|+++++..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2345556777788 99999999999999874 3467889999999999999999999999999864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-18 Score=171.69 Aligned_cols=327 Identities=13% Similarity=0.016 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence 344444455555555555555555554432 23344455555555555555555555555544432 2344445555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSP----DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 347 (595)
...|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 5555555555555554432 22 1111111110000 0011122455566666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 348 MDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 348 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665543 3445556666666666666666666666666543 33555666666666666666666666666
Q ss_pred HhhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHH
Q 007640 428 MKGKNLSPNVYTFT------------ILINALCKENRLNDARRFLKQLKWNDLVPKP----FMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 428 m~~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A 491 (595)
..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 65542 22333222 2244566677777777777766654422 22 2244456666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
...+++..+.. +.+..++..+...+...|++++|...|+++++.. +.+...+..+..+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 77777766652 2256666667777777777777777777776643 33344454444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-18 Score=171.84 Aligned_cols=320 Identities=10% Similarity=0.020 Sum_probs=245.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
++..+..+...+...|++++|+..|+++.+..+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345666777777788888888888888777654 466777777777777788888887777776542 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSP----DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+...|++++|.+.++++.... | +...+..+...+. ...+..+...+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 7777777777777777776533 3 2222222222110 11233456788999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007640 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFL 460 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (595)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998864 4577889999999999999999999999998874 668899999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 007640 461 KQLKWNDLVPKPFMYN------------PVIDGFCKAGNVDEANVIVAEMEEKRCKPDK----VTFTILIIGHCMKGRMV 524 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 524 (595)
+...+.... +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 999876533 344333 2366789999999999999999886422 33 23556778899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 525 EAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+|...++++++.. +.+..++..++.+|.+.|++++|.+.++++.+..+....
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999864 557889999999999999999999999999998765443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-16 Score=166.80 Aligned_cols=353 Identities=9% Similarity=-0.022 Sum_probs=252.0
Q ss_pred CCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhccCCCCccC
Q 007640 154 HSFKTYNLVMRSLCE----MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR----AGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 154 ~~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
-++..+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .+++++|...|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777777777777 778888888888777754 56677777777777 777888888888777654 5
Q ss_pred HHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHH
Q 007640 226 TFMYNSLLNALVK----QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR----IGEVKKAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 226 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 297 (595)
...+..|...|.. .+++++|..+|++..+.+ +...+..|...|.. .++.++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5666777777777 677888888888777643 55667777777766 677888888887777654 566
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 007640 298 TYNTLISGLCR----VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVT 369 (595)
Q Consensus 298 t~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~ 369 (595)
.+..+...|.. .++.++|.+.|++....+ +...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 77777777776 677888888887776543 45566667666665 677788888887777654 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 370 FNVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN-----GQLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 370 ~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
+..+...|.. .++.++|...|++..+.| +...+..+...|... +++++|+..|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5666666666 677788888887777654 455666677777766 77788888877777765 45566
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 441 TILINALCKEN---RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTIL 513 (595)
Q Consensus 441 ~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 513 (595)
..+...|...| +.++|.+++++..+.+ ++..+..|...|.. .+++++|.+.|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66766666655 6777777777777653 56677777777777 677778888877777764 46667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 514 IIGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 514 i~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
...|.. .+++++|..+|++..+.+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777776 677888888887777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-16 Score=168.36 Aligned_cols=366 Identities=10% Similarity=-0.037 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH----cCCHhHH
Q 007640 174 SVQVVFDYMRSDGHLPNSPMIEFFVSSCIR----AGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK----QNNADEA 245 (595)
Q Consensus 174 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 245 (595)
.++..+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455555555543 66777777777777 788888888888887654 56677778888888 7888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 007640 246 VYMFKEYFRLYSQPDTWTFNILIQGLSR----IGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR----VNEVARGHE 317 (595)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ 317 (595)
..+|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888887743 56677777777777 778888888888887765 56677777777776 678888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 007640 318 LLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK----VGNMVSAEYM 389 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~ 389 (595)
.|++....+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+
T Consensus 173 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 173 WYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888877643 56777778777777 788888888888888764 55667777777765 7788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 007640 390 RERMLSFGYLPDVVTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE-----NRLNDARRFL 460 (595)
Q Consensus 390 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~ 460 (595)
|++..+.| +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 88888764 45666677777777 788888888888887765 556777777777776 7888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 007640 461 KQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKM 533 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 533 (595)
++..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888765 4567777777777755 7788888888888764 67777888888877 78888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 007640 534 LRIGCAPDDITVNSLISCLLK----GGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 534 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 573 (595)
.+.| +...+..|...|.+ .+++++|.++++++.+.++
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8765 56777788888887 7888888888888887763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-18 Score=166.57 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 007640 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVI 339 (595)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll 339 (595)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 34445555555555566666666665555432 2233444445555555666666666666655433 23445555666
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 340 SGYCKLG-KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL 418 (595)
Q Consensus 340 ~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 418 (595)
..+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666666666665543 2344556666666666666666666666665543 12344555566667777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHHcCCHHH
Q 007640 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND--------LVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
++|...+++..+.. +.+..++..+...+...|++++|...++++.+.. ......++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777766653 4456667777777777777777777777665431 12335677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL-LKGGMPN 559 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 559 (595)
|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888888877653 2356777778888888888888888888877653 44666777777777 4555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-16 Score=165.62 Aligned_cols=411 Identities=9% Similarity=0.023 Sum_probs=305.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++.... |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 58889999998 488999999999999999865 7788899999999999999999999999999864 5777887777
Q ss_pred HHH-HHcCCHhHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHH
Q 007640 234 NAL-VKQNNADEAVY----MFKEYFRL-YSQ-PDTWTFNILIQGLSR---------IGEVKKAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 234 ~~~-~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 297 (595)
... ...|+.+.|.+ +|++.+.. |.. ++...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 544 35677777665 77776553 433 356778887776655 688999999999998731111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC--CCCCC--------HhhHHHHHHHHHhc---
Q 007640 298 TYNTLISGL-------------CRVNEVARGHELLKEVK------FKS--EFSPD--------VVTYTSVISGYCKL--- 345 (595)
Q Consensus 298 t~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~--~~~p~--------~~~~~~ll~~~~~~--- 345 (595)
.|....... .+.++++.|..++..+. ... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 12345677777766532 110 12333 24555555433322
Q ss_pred -CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHH
Q 007640 346 -GKM----DKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-------VGNMV-------SAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 346 -g~~----~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47788999988753 4567788888877765 79987 8999999998732344688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPN-V-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG-FC 483 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~ 483 (595)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+... .+...|...+.. +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 9999999999999999999999986 443 3 5888889989999999999999999987642 233344333322 34
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAPD--DITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~ 560 (595)
..|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6899999999999998763 3368889999999999999999999999999864 2332 4588888888899999999
Q ss_pred HHHHHHHHHhcCC
Q 007640 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
+.++.+++.+..+
T Consensus 482 ~~~~~~r~~~~~p 494 (530)
T 2ooe_A 482 ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCc
Confidence 9999999988765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-17 Score=164.21 Aligned_cols=292 Identities=12% Similarity=0.004 Sum_probs=206.9
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI 303 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 303 (595)
.+...+..++..+...|++++|..+|+++.+..+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445566667777777777777777777776654 345566666677777777777777777776532 33566677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 304 SGLCRVN-EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN 382 (595)
Q Consensus 304 ~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 382 (595)
..+...| ++++|.+.|+++.... +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 7777777 7777777777776543 3345667777777777788888888887777653 3345566667777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 007640 383 MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--------LSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
+++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888777653 3456777778888888888888888887776531 1334567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH-CMKGRM 523 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~~ 523 (595)
+|...+++..+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 888888888776533 67788888888888888888888888887653 23566777777766 345543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=171.73 Aligned_cols=266 Identities=9% Similarity=-0.065 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGF 377 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 377 (595)
.+..+...+.+.|++++|...|+++.... +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34445555555555555555555554432 2334455555555555555555555555555433 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHH
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFS---------------SLIDGYCRNGQLNQGLKLCDEMKGKNLSP--NVYTF 440 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---------------~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~ 440 (595)
...|++++|...++++.+.... +...+. ..+..+...|++++|...++++.+.. +. +..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHH
Confidence 5555555555555555543211 111111 02333348899999999999988764 22 58889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 520 (595)
..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999887653 367889999999999999999999999998763 34678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 521 GRMVEAISIFNKMLRIGCA----------PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|++++|...|+++++.... ....+|..++.+|...|++++|..++++.++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999874211 1268899999999999999999998875543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=166.50 Aligned_cols=304 Identities=9% Similarity=-0.053 Sum_probs=163.9
Q ss_pred hcCChHHHHH-HHHhccCCCCc---cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 203 RAGKCDAAKG-LLSQFRPGEVT---MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 203 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
..|++++|.. .+++....... .+...+..+...+.+.|++++|...|+++.+..+ .+..+|..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 77766543221 1244566777788888888888888888877654 46777777888888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007640 279 KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
+|...|+++.+.. +.+..++..+...+...|++++|.+.++++....+ .+...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHH-------hh-------h
Confidence 8888888777543 34667777777777788888888888877766431 112222111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 007640 359 NSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV 437 (595)
Q Consensus 359 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 437 (595)
. .+. ..+.. +..+...|++++|...++++.+..... +..++..+...|...|++++|...++++.... +.+.
T Consensus 179 ~----~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----GLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----ccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 000 00001 111224455555555555554432110 34555555555555555555555555554442 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP----------DK 507 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------~~ 507 (595)
.++..+...+...|++++|...++++.+... .+..++..+...|.+.|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5555555555556666666666555554432 245555566666666666666666666555431110 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
.+|..+..++...|++++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5566666666666666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-15 Score=157.97 Aligned_cols=387 Identities=10% Similarity=0.041 Sum_probs=283.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 007640 179 FDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ 258 (595)
Q Consensus 179 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (595)
|++..+.. |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444443 668889999998 478999999999999998863 6688899999999999999999999999999864
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007640 259 PDTWTFNILIQGL-SRIGEVKKAFE----FFYDMGS-FGCSP-DIVTYNTLISGLCR---------VNEVARGHELLKEV 322 (595)
Q Consensus 259 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~li~~~~~---------~g~~~~A~~~~~~~ 322 (595)
|+...|...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777887777533 45677776655 7776653 35444 45677777776554 68899999999998
Q ss_pred HhcCCCCCCHhhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHHH
Q 007640 323 KFKSEFSPDVVTYTSVISGY-------------CKLGKMDKATGIYNEMN------SCG---IKPS--------AVTFNV 372 (595)
Q Consensus 323 ~~~~~~~p~~~~~~~ll~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~--------~~~~~~ 372 (595)
.... ..+....|....... .+.+++..|..++.++. +.. ++|+ ...|..
T Consensus 157 l~~P-~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CVNP-MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hhch-hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 8621 111123343322211 13456777877777632 211 2444 234544
Q ss_pred HHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHhh
Q 007640 373 LIDGFGKV----GNM----VSAEYMRERMLSFGYLPDVVTFSSLIDGYCR-------NGQLN-------QGLKLCDEMKG 430 (595)
Q Consensus 373 ll~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~ 430 (595)
.+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 44332221 232 36778898888752 3467888888888776 69987 99999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 431 KNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP-FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
.-.+.+...|..++..+.+.|++++|..+++++.+.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 334557889999999999999999999999999986422 33 589999999999999999999999999763 223333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 510 FTILIIG-HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 510 ~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|+++++..+.+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 3332222 346899999999999999854 5568899999999999999999999999999976544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-14 Score=161.13 Aligned_cols=403 Identities=13% Similarity=0.117 Sum_probs=211.7
Q ss_pred hhhhcCCCCchhHHHHHHhcCCchHHHHHHHHhhh-CCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCC
Q 007640 114 ARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRV-NLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDG--HLPN 190 (595)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~ 190 (595)
.+++..+-+|+.+..||..- .+.-..+.+|... ..+-+.++.--...++.|...|.+.+|+++++++.-.+ +.-+
T Consensus 944 arylv~r~d~~lW~~vl~~~--n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLES--NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCC--cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 45666777888888887432 2445567777543 33334566667778999999999999999999998532 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--------------
Q 007640 191 SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY-------------- 256 (595)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------- 256 (595)
...-+.++.+..+. +..+..+...+..... ...+...+...|.+++|..+|++.....
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nld 1093 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLD 1093 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHH
Confidence 34444455444333 3333333333332110 1123344444444444444444431000
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 257 -------SQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFS 329 (595)
Q Consensus 257 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 329 (595)
-.-+..+|..+..++...|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+.......
T Consensus 1094 rAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--- 1164 (1630)
T 1xi4_A 1094 RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--- 1164 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---
Confidence 0023444555555555555555555555432 244455555555555555555555555444322
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
++....+.++.+|++.+++++...+ .+ .++...|..+...|...|++++|..+|... ..|..+.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA 1228 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 1228 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHH
Confidence 2222223355555555555432222 11 234444444555555555555555555542 2455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 007640 410 DGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD 489 (595)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (595)
.+|++.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.++
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555544 1334555555555555555555544332 2234556667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCM--KGRMVEAISIFNKMLRIGCAP------DDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A 561 (595)
+|+.+++...... +-....|+-+...+++ -++..++.++|..-.. +++ +...|..++-.|.+.|+++.|
T Consensus 1298 EAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1298 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 7777776666443 2233345555555544 4455555555553322 222 445677777777777777777
Q ss_pred HHHH
Q 007640 562 FRIM 565 (595)
Q Consensus 562 ~~~~ 565 (595)
...+
T Consensus 1375 ~~tm 1378 (1630)
T 1xi4_A 1375 IITM 1378 (1630)
T ss_pred HHHH
Confidence 6533
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-17 Score=162.68 Aligned_cols=232 Identities=9% Similarity=-0.064 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+.+.|++++|+..|+++++..+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344577777888888888888888888877654 467778888888888888888888888777542 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC-Hh----------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSPD-VV----------TYTSVISGYCKLGKMDKATGIYNEMNSCGIK-PSAVTFNV 372 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~----------~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ 372 (595)
.|...|++++|.+.++++.... |+ .. .+..+...+.+.|++++|...|+++.+.... ++..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 7777777777777777776533 22 11 1222344555555555555555555543210 03444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR 452 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (595)
+...|...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4444444455555554444444432 1233444444444444444444444444444331 2233444444444444444
Q ss_pred HHHHHHHHHHH
Q 007640 453 LNDARRFLKQL 463 (595)
Q Consensus 453 ~~~A~~~~~~~ 463 (595)
+++|...++++
T Consensus 297 ~~~A~~~~~~a 307 (365)
T 4eqf_A 297 YREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-15 Score=157.83 Aligned_cols=370 Identities=9% Similarity=-0.057 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC--------CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC---
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG--------EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY--- 256 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 256 (595)
......|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888899999999999999886532 123346778888999999999999998888876531
Q ss_pred C----CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 007640 257 S----QPDTWTFNILIQGLSRI--GEVKKAFEFFYDMGSFGCSPDIVTYNTLISG---LCRVNEVARGHELLKEVKFKSE 327 (595)
Q Consensus 257 ~----~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~---~~~~g~~~~A~~~~~~~~~~~~ 327 (595)
. .....++..+..++... +++++|...|++..+.. +-+...+..+... +...++.++|++.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 0 12345566655555554 46889999998887642 2234445444444 345577788888888877654
Q ss_pred CCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007640 328 FSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (595)
+.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...+++..+.. +-+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 3345555555554443 467788888888887754 4566778888888899999999999998888753 33566
Q ss_pred HHHHHHHHHHHc-------------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 404 TFSSLIDGYCRN-------------------GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 404 ~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
++..+..+|... +..++|...+++..+.. +.+..++..+...+...|++++|...|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 777777666432 23456666676666543 3445567777778888888888888888877
Q ss_pred hCCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007640 465 WNDLVPKPF--MYNPVID-GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD 541 (595)
Q Consensus 465 ~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (595)
+....+... .+..+.. .+...|++++|+..|++..+. .|+..... +....+.+++++.++.. +.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~ 429 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GAD 429 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-C
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCC
Confidence 665433221 2222222 234567888888888887765 34433222 12234455566665544 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 542 DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
..+|..|+.+|...|++++|++.++++++.++..
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999877644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-14 Score=157.56 Aligned_cols=398 Identities=14% Similarity=0.124 Sum_probs=290.6
Q ss_pred hcCCCCchhHHHHHHhc---CCchHHHHHHHHhhhCCC-CCCCHHHHHHHH---------------------------HH
Q 007640 117 LCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSRVNLS-LNHSFKTYNLVM---------------------------RS 165 (595)
Q Consensus 117 ~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~-~~~~~~~y~~li---------------------------~~ 165 (595)
+.+..+|+.+....+.+ +.+..++.+++-....+. ++.+....+.|+ ..
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~I 1058 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANI 1058 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHH
Confidence 45567888887666655 677888887776654433 444455555554 34
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEA 245 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (595)
+...|++++|..+|++.. -.....+.++. ..+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 556777777777777642 11112222322 6677888888877652 467888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 246 VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..... .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999663 578889999999999999999999999877654 34334445999999999988644432 1
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007640 326 SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTF 405 (595)
Q Consensus 326 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 405 (595)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 356677888999999999999999999985 48999999999999999999999876 366899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 007640 406 SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485 (595)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (595)
..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.....+ .-....|+.+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 99999999999999998876543 3356677899999999999999999999887665 34566788888888875
Q ss_pred C--CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 486 G--NVDEANVIVAEMEEKRCKP------DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 486 g--~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
. +..++.++|..-.. ++| +...|.-++..|.+.|+++.|.. .|++. +++..-....-....+..+
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~---tm~~h--~~~a~~~~~Fk~~i~kv~n 1400 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVAN 1400 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH---HHHhc--cHhhhhhHHHHHHhccccc
Confidence 3 56666666654332 222 46779999999999999999986 44442 3343333344445556666
Q ss_pred HHHHHHHHHHHHhcC
Q 007640 558 PNEAFRIMQRASEDQ 572 (595)
Q Consensus 558 ~~~A~~~~~~~~~~~ 572 (595)
.+--.+...-.++..
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 555444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=160.48 Aligned_cols=276 Identities=11% Similarity=-0.086 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 261 TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.... +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3345556666666666666666666665432 2345556666666666666666666666655433 233455555666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSCGIKPSAV-TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLN 419 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 419 (595)
.|...|++++|...|+++.+.. |+.. .+..+. .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 6666666666666666655421 2110 010000 01223344456666667777
Q ss_pred HHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 420 QGLKLCDEMKGKNLSP--NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
+|...++++.+.. +. +..++..+...|...|++++|.+.++++.+... .+..+|..+...|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777666553 22 566677777777777777777777777766542 3566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGC---A--------PDDITVNSLISCLLKGGMPNEAFRIMQ 566 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 566 (595)
+.+.. +.+..++..+..+|...|++++|...|+++++..- . .+..+|..+..++...|+.+.+.+..+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77652 22466777777777778888888888877776320 0 135677888888888888888887776
Q ss_pred HHH
Q 007640 567 RAS 569 (595)
Q Consensus 567 ~~~ 569 (595)
+..
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=156.32 Aligned_cols=279 Identities=8% Similarity=-0.060 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 44455556666666666666666665432 2244555555566666666666666666655443 23445555555566
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL-ID-GYCRNGQLNQ 420 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~ 420 (595)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 66666666666666655532 1111111111000 0111111112 12 2666778888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887664 45778888888888888999999999888877653 3677888999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP-----------DDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.. +.+...+..+...+...|++++|...++++++..... +...+..+..++.+.|++++|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 63 3367888899999999999999999999988753111 46788899999999999999999887655
Q ss_pred h
Q 007640 570 E 570 (595)
Q Consensus 570 ~ 570 (595)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-16 Score=152.23 Aligned_cols=278 Identities=10% Similarity=-0.036 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGL 306 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 306 (595)
..+..+...+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445566666677777777777777766553 356666677777777777777777777766542 33566666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHH
Q 007640 307 CRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLID--GFGKVGNMV 384 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~ 384 (595)
...|++++|.+.++++.... +.+...+..+... .|+......+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 77777777777777766543 1122222222000 000111111111 133344444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 385 SAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 1234444444455555555555555555544432 3344455555555555555555555555554
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-----------DKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
+... .+..++..+...+...|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 234 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4332 234455555555555566666666555555432110 2445556666666666666666655543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=158.35 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=117.3
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 127 LEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK 206 (595)
Q Consensus 127 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (595)
..+|..+++-+.|..|++-. +++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+
T Consensus 10 ~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC
Confidence 34455556667777777665 2335888888888888888888888864 3566688888888888888
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYD 286 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (595)
+++|+..++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766653 3456778888888888888888777664 36667888888888888888888888886
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 007640 287 MGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS 366 (595)
Q Consensus 287 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~ 366 (595)
+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 6 36788888888888888888888877 25678888888888888888885544432 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhCCCCC------CHH
Q 007640 367 AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN--GQLNQGLKLCDEMKGKNLSP------NVY 438 (595)
Q Consensus 367 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p------~~~ 438 (595)
+.-...++..|.+.|.+++|..+++...... +.....|+-|.-+|++- ++..+.+++|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3335567778888888888888888877654 44566777776666654 233344443331 112222 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFL 460 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~ 460 (595)
.|..+...|.+.++++.|...+
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 5677777777888888776643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=156.33 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=138.0
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHH
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (595)
-+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36778999999999883 2349999999999999999999999653 46779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 247 YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 987777663 4567889999999999999999998885 477789999999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 327 EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 327 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 37999999999999999999999998 37899999999999999999996555442 23444566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC------CHhhHHHHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW-NDLVP------KPFMYNPVI 479 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~li 479 (595)
.++..|.+.|++++|..+++...... +.....|+-|..+|++- ++++.++.++.... .+++| +...|..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998776 66778888888877764 34444444443322 23322 466899999
Q ss_pred HHHHHcCCHHHHHHH
Q 007640 480 DGFCKAGNVDEANVI 494 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l 494 (595)
..|.+.++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 999999999988763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-15 Score=156.14 Aligned_cols=366 Identities=12% Similarity=-0.028 Sum_probs=253.5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-----
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD--------GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG----- 220 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 220 (595)
.....||.|..++...|++++|++.|++..+. ..+....+|..+...|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568999999999999999999999987652 12445678999999999999999999998876531
Q ss_pred --CCccCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 007640 221 --EVTMSTFMYNSLLNALVKQN--NADEAVYMFKEYFRLYSQPDTWTFNILIQG---LSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 221 --~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
.......++..+..++.+.| ++++|+..|++.++..+ .+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11234567777777776654 68999999999998764 356666655555 345677889999998887643 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 007640 294 PDIVTYNTLISGLCR----VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVT 369 (595)
Q Consensus 294 p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 369 (595)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...|++..+.. +-+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 355666666555554 467889999999887654 4567788999999999999999999999998864 345566
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 370 FNVLIDGFGKV-------------------GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 370 ~~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+..+..+|... +..+.|...++...+.. +.+...+..+...|...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 23567777888777653 23456788899999999999999999999987
Q ss_pred CCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007640 431 KNLSPNVY--TFTILIN-ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 431 ~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
....+... .+..+.. .+...|+.++|+..+++..+.. |+.... .+..+.+.+++++..+.. +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCH
Confidence 65333221 2233332 2346799999999999998765 332222 122344556666666553 3467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
.+|..+...|...|++++|++.|++.++.+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=146.22 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=147.3
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNS--PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3445567777777766654432 2222 34455666777777777766655431 24455666666666766777
Q ss_pred HhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLK 320 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 320 (595)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777766654323 444555556666777777777776665 3456666666666777777777777776
Q ss_pred HHHhcCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 321 EVKFKSEFSPDVVTY---TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 321 ~~~~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
++.... |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+..
T Consensus 155 ~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666543 332211 112233334466666666666666542 4455666666666666666666666666665542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhC
Q 007640 398 YLPDVVTFSSLIDGYCRNGQLNQ-GLKLCDEMKGK 431 (595)
Q Consensus 398 ~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 431 (595)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2355566666666666666654 44566665554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-15 Score=144.96 Aligned_cols=253 Identities=11% Similarity=0.052 Sum_probs=193.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 007640 268 IQGLSRIGEVKKAFEFFYDMGSFGCSPDI--VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL 345 (595)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 345 (595)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. .+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 45566789999999988876533 3443 35566778899999999988766441 356777888888889999
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 346 GKMDKATGIYNEMNSCGIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 346 g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 424 (595)
++.++|++.++++...+..| +...+..+..++...|++++|...+++ +.+...+..++..+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988876545 455566677888999999999998887 35778888888999999999999999
Q ss_pred HHHHhhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 425 CDEMKGKNLSPNVYTF---TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 425 ~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
++++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|...++++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988764 443211 122233344588999999999988774 457888899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 007640 502 RCKPDKVTFTILIIGHCMKGRMVE-AISIFNKMLRIG 537 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 537 (595)
. +-+..++..++..+...|+.++ +.++++++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4 3377788888888888888876 568888888753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-18 Score=179.92 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcc---CCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFR---PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILI 268 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 268 (595)
.+|+.+|.+|++.|++++|.++|++|. ..|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 355566666666666666666655443 23556666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007640 269 QGLSRIGE-VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 269 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666665 35666666666666666666666666655444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=175.50 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKW---NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.||++||++||+.|++++|.++|++|.+ .|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3445555555555555555555444332 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 515 IGHCMKGR-MVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 515 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244455555555555555555555444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=150.67 Aligned_cols=377 Identities=12% Similarity=0.006 Sum_probs=260.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC---DAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|...|++..+. ++..+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677889999999999999998876 333555666777778888 8999999998864 5566777777566
Q ss_pred HcC-----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007640 238 KQN-----NADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK---KAFEFFYDMGSFGCSPDIVTYNTLISGLCRV 309 (595)
Q Consensus 238 ~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 309 (595)
..+ +.++|..+|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78899999999998664 33 6777778887766543 4555555555444 455666777788877
Q ss_pred CCH----HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007640 310 NEV----ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG---KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV-- 380 (595)
Q Consensus 310 g~~----~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-- 380 (595)
+.+ +.+..+++.... .+...+..|...|.+.| +.++|++.|++..+.| +++...+..|...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CCcccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 744 444555555432 23348888999999999 9999999999999988 56666656777777655
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----
Q 007640 381 --GNMVSAEYMRERMLSFGYLPDVVTFSSLIDG-Y--CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN---- 451 (595)
Q Consensus 381 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g---- 451 (595)
+++++|...|++.. .| +...+..+... + ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999988 43 55666677666 4 46899999999999999887 6778888888887 55
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 007640 452 -RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGR 522 (595)
Q Consensus 452 -~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 522 (595)
++++|.++|++.. . .++..+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999888 3 367788888887776 3499999999999998763 3445566666653 568
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 523 MVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.++|..+|++..+.| .++.......+......++..+|.++.++..+..
T Consensus 374 ~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999887 3344333333333344557788888888776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-14 Score=132.84 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY--LPD----VVTFSS 407 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 407 (595)
.+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+... .++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555443 4445555555555555555555555555544210 011 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007640 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
+...+...|++++|...+++.... .|+. ..+.+.|++++|...++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 556666666666666666665553 2332 234445556666666666655432 234556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
+++|...++++.+.. +.+...|..+...+...|++++|+..++++++.. +.+...+..++.++.+.|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666666543 2245666666666666667777776666666643 44456666666666667777777776666
Q ss_pred HHhcC
Q 007640 568 ASEDQ 572 (595)
Q Consensus 568 ~~~~~ 572 (595)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=131.17 Aligned_cols=199 Identities=18% Similarity=0.054 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
++...+..+...+...|++++|...+++.++.. +.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 444455555555556666666666666555542 2345555555566666666666666666655543 34455556666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 445 NALCKE-----------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTIL 513 (595)
Q Consensus 445 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 513 (595)
..+... |++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 8888888888888776533 56778888888888888888888888888776 577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 514 IIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
..++...|++++|+..|+++++.. +.+...+..+..++.+.|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888888764 5567778888888888888888888887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-12 Score=124.29 Aligned_cols=226 Identities=8% Similarity=-0.051 Sum_probs=167.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+..++..+...+...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666666777777777777777777763 344566666677777 777777777777777764 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007640 407 SLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 407 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777888888877777764 66777777777777 788888888888877765 45667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 479 IDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLIS 550 (595)
Q Consensus 479 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 550 (595)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.++++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888887763 56677777778887 888888888888888764 2667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCC
Q 007640 551 CLLK----GGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 551 ~~~~----~g~~~~A~~~~~~~~~~~~~ 574 (595)
+|.+ .+++++|.++++++.+.++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8887 88888888888888877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-14 Score=130.38 Aligned_cols=200 Identities=12% Similarity=0.007 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+++...+..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566677778888888888888888888887765 6677778888888888888888888888877654 4466777777
Q ss_pred HHHHHHc-----------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 233 LNALVKQ-----------NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNT 301 (595)
Q Consensus 233 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 301 (595)
...+.+. |++++|+..|++.++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777777777654 356677777777777777777777777777655 56677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...|++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777776543 3345666677777777777777777776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=129.97 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--C----HHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--S----TFMYN 230 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 230 (595)
..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...++++.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666667777777777777777766654 555666666666666666666666666655432111 1 45556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 007640 231 SLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 310 (595)
.+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666665543 221 23344455555555555554321 112334444444455555
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
++++|.+.++++.... +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555544332 2233444444444445555555555554444432 222334444444444444444444444
Q ss_pred HHHH
Q 007640 391 ERML 394 (595)
Q Consensus 391 ~~m~ 394 (595)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=141.39 Aligned_cols=348 Identities=11% Similarity=0.008 Sum_probs=240.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 196 FFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA---DEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999997765 344566677777778888 8999999998863 5566777777565
Q ss_pred hcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 007640 273 RIG-----EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA---RGHELLKEVKFKSEFSPDVVTYTSVISGYCK 344 (595)
Q Consensus 273 ~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 344 (595)
..+ +.++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......+ +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHc
Confidence 555 78899999999998663 336777777777655433 3455555554433 45677778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CC
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG---NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN----GQ 417 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~ 417 (595)
.+.++++......+.+.-...+...+..|...|...| +.++|...|++..+.| .++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 8866555544333322211233348888888999999 9999999999999987 45666556677777554 79
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----CHH
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINA-L--CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-----NVD 489 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~ 489 (595)
+++|+..|++.. .| +...+..|... + ...+++++|.++|++..+.| ++..+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999998 43 55667777776 4 46899999999999999877 6778888888887 55 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEA 561 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 561 (595)
+|.+.|++.. .| +...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..++++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999988 43 67777888877766 4499999999999998773 3455677777764 4589999
Q ss_pred HHHHHHHHhcCC
Q 007640 562 FRIMQRASEDQN 573 (595)
Q Consensus 562 ~~~~~~~~~~~~ 573 (595)
..+++++.+.+.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-13 Score=126.78 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS--AVTFNVLIDG 376 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~ 376 (595)
+......+...|++++|.+.++++.... +.+...+..+...+...|++++|+..+++..+.+-.++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444555556666666666666655433 22333555555566666666666666666655221111 1224555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDA 456 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (595)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 1233455555555555555555555555554442 33344444444222233355555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 007640 457 RRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKR-CKPD------KVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~A 526 (595)
.+.++++.+.... +...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555443321 23444444444444444 444544444444321 0111 12344444444444444444
Q ss_pred HHHHHHHHH
Q 007640 527 ISIFNKMLR 535 (595)
Q Consensus 527 ~~~~~~m~~ 535 (595)
...++++++
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-13 Score=127.05 Aligned_cols=242 Identities=7% Similarity=-0.009 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP--DVVTFSSLIDG 411 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 411 (595)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.+..+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776653 2334466666667777777777777777776632111 12346666777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|...+++..+.. +.+..++..+...|...|++++|...+++..+... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766653 34556677777777777777777777777665532 2455666666333344577777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIG-CAPD------DITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 561 (595)
.+.++++.+.. +.+...+..+...+...|+ +++|...++++++.. -.|+ ..++..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776652 2235566666666666666 666777776666521 1122 24566677777777777777
Q ss_pred HHHHHHHHhcCCCCCCcc
Q 007640 562 FRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~ 579 (595)
.+.++++.+..+.+...+
T Consensus 241 ~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCccHHHHH
Confidence 777777776665544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=122.53 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=117.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666677777777777777777766643 3355566666666666777777777666666543 2245566666666
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
|...|++++|...++++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 344555555556666666666666666555432 234555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665555432 234445555555555556666666655555553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-11 Score=118.50 Aligned_cols=224 Identities=13% Similarity=-0.011 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 007640 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTF 370 (595)
Q Consensus 295 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~ 370 (595)
+..++..+...+...|++++|.+.|++.... .+...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3445555556666666666666666666542 234555566666666 667777777777666654 55566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 371 NVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 371 ~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 677777777777776654 55666667777777 777777777777777654 4556666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 443 LINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666766 777777777777777654 45667777777777 778888888888777763 356667777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 515 IGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 515 ~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
..|.. .+++++|..+|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-12 Score=121.81 Aligned_cols=201 Identities=10% Similarity=-0.028 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4577788888889999999999999888764 5567777778888888888888888887776543 3456677777777
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 45566667777777777777777777766532 2345666666677777777777
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 315 GHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 315 A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
|.+.++.+.... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777665433 344555666666666677777777777766654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-10 Score=122.66 Aligned_cols=419 Identities=10% Similarity=0.015 Sum_probs=295.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhccCCC-CccCHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK---CDAAKGLLSQFRPGE-VTMSTFMY 229 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~ 229 (595)
.|...|..++..+.+.+.++.+..+|+.+...- |.....|...+..-.+.+. ++.+..+|++..... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 689999999999999999999999999999864 7788889888998888898 999999999998753 14889999
Q ss_pred HHHHHHHHHcCCH--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhh
Q 007640 230 NSLLNALVKQNNA--------DEAVYMFKEYFR-LYS-QP-DTWTFNILIQGLS---------RIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 230 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 289 (595)
...+....+.++. +...++|+..+. .|. .+ +...|...+.... ..++++.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9988877776654 334477777654 344 44 3567777776543 34457889999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcC-CC----C-----------C--C------H
Q 007640 290 FGCSPDIVTYNTLISGLCR-------------VNEVARGHELLKEVKFKS-EF----S-----------P--D------V 332 (595)
Q Consensus 290 ~g~~p~~~t~~~li~~~~~-------------~g~~~~A~~~~~~~~~~~-~~----~-----------p--~------~ 332 (595)
.....-..+|......--. ..+++.|...+.++.... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2111112333222111100 122344555554432110 00 0 1 0 1
Q ss_pred hhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHH
Q 007640 333 VTYTSVISGYCKLG-------KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE-YMRERMLSFGYLPDVVT 404 (595)
Q Consensus 333 ~~~~~ll~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~ 404 (595)
..|...+..--..+ ..+.+..+|++.+.. ++-+...|...+..+...|+.++|. .+|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555554333322 123456778888765 3557778888888888889999996 999999874 3456677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKN---------LSPN------------VYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
|-..+....+.|++++|..+|+.+.... ..|+ ..+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888999999999999999987641 0132 346777788778889999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 007640 464 KWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP-- 540 (595)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-- 540 (595)
.+.-.......|...+..-.+.+ +.+.|.++|+..++. .+-+...|...+.-....|+.+.|..+|++.+.....+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 87611223445544444444444 599999999999887 44467777888888888999999999999998854222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 541 DDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
....|...+..-.+.|+.+.+.++.+++.+..+.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346788888888999999999999999999887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=130.26 Aligned_cols=28 Identities=18% Similarity=-0.008 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+..+...+...|++++|...|+++++
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-13 Score=129.09 Aligned_cols=248 Identities=6% Similarity=-0.131 Sum_probs=189.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCS---PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 348 (595)
...|++++|+..|+++.+.... .+..++..+...+...|++++|.+.|+++.... +.+...|..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 4567899999999999875321 245678888899999999999999999988764 44678899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
++|.+.|+++.+.. +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 4467888899999999999999999999998753 44444445555667779999999999887
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007640 429 KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP---KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP 505 (595)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 505 (595)
.... +++...+. ++..+...++.++|...++......... +..++..+...|.+.|++++|...|+++.+.. |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 44444443 6667778888899999998887553211 15788889999999999999999999998763 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 233355667778888887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-12 Score=117.05 Aligned_cols=202 Identities=10% Similarity=-0.011 Sum_probs=110.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007640 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID 410 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 410 (595)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666677777777666666543 3345556666666666666666666666665542 224455555566
Q ss_pred HHHHc-CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 411 GYCRN-GQLNQGLKLCDEMKGKNLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666655521112 234455555555555555555555555554432 1344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++|.++++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432112444444444455555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-13 Score=126.01 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=88.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555566666666666666665532 2344555555555555556666655555555432 2244455555555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554432 33444444455555555555555555555444321 1344444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...++++.+.. +.+..++..+...+...|++++|...++++++
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55554444432 12344444444444444444444444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-12 Score=116.86 Aligned_cols=201 Identities=13% Similarity=-0.015 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 297 VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDG 376 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 376 (595)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344444555555555555555555554432 2234455555555555555555555555555432 2344555555556
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007640 377 FGKV-GNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 377 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666555211222 4455566666666666666666666665543 334566666666667777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777776665443135555666666666777777777777766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=128.87 Aligned_cols=249 Identities=6% Similarity=-0.055 Sum_probs=193.7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-CDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
+...|+.+..++.+.|++++|+..|+++++.. +-+..+|..+..++...|+ +++|+..|+++.+.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45678888899999999999999999999876 6678899999999999997 999999999998765 45788999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR-VNEV 312 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~ 312 (595)
.++...|++++|+..|+++++..+ .+...|..+..++...|++++|+..|+++++.. +-+...|+.+...+.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999998875 588899999999999999999999999998653 3367788888888888 5654
Q ss_pred HHH-----HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007640 313 ARG-----HELLKEVKFKSEFSPDVVTYTSVISGYCKLG--KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG---- 381 (595)
Q Consensus 313 ~~A-----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 381 (595)
++| ++.+++..... +-+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 666 47777776644 345667888887787777 578888888777 32 2445667777777777763
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007640 382 -----NMVSAEYMRERM-LSFGYLPDVVTFSSLIDGY 412 (595)
Q Consensus 382 -----~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~ 412 (595)
..++|..+++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5542 22334555554444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=124.52 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 355678888888889999999999999988865 5677888888888888888888888888887653 34677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
..+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887654 467778888888888888888888888877542 335667777777888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 314 RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
+|.+.++++.... +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888776653 344667777777788888888888888877764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-12 Score=128.23 Aligned_cols=246 Identities=7% Similarity=-0.049 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK-MDKATGIYNEMNSCGIKPSAVTFNVLIDG 376 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 376 (595)
.|..+...+.+.|++++|++.++++.... +.+...|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34444455555555555555555555433 2234455555555555554 666666665555543 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK-ENRLND 455 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~ 455 (595)
+...|++++|...++++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 555566666666666555542 2245556666666666666666666666665553 3455566666666665 444355
Q ss_pred H-----HHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 007640 456 A-----RRFLKQLKWNDLVPKPFMYNPVIDGFCKAG--NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG------- 521 (595)
Q Consensus 456 A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g------- 521 (595)
| +..+++....... +...|+.+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 3566666655432 4566666666666666 467777777666 32 2335566667777776653
Q ss_pred --CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 007640 522 --RMVEAISIFNKM-LRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 522 --~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~ 552 (595)
..++|+++++++ ++.+ +.....|..++..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777776 5432 33334455554444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-13 Score=134.86 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCCHhh
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFK----SEFSPDVVT 334 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~ 334 (595)
.+..+...+...|++++|...|+++.+.. +.+. ..+..+...|...|++++|.+.+++.... +..+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666777777777777766542 1122 34556666666667777777666665432 000112344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCC
Q 007640 335 YTSVISGYCKLGKMDKATGIYNEMNSCG-----IKPSAVTFNVLIDGFGKVGN----------MVSAEYMRERMLSFGYL 399 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~~~g~~ 399 (595)
+..+...|...|++++|...|++..+.. .+....++..+...|...|+ .++|...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 5555666666666666666666654320 00112233444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC--
Q 007640 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK----NL-SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PK-- 471 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~-- 471 (595)
+++|...+++..+. +. +....++..+...|...|++++|...+++..+.... ++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 44444444443221 10 111234555555666666666666666655432110 01
Q ss_pred --HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 007640 472 --PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-P----DKVTFTILIIGHCMKGRMVEAISIFNKMLRI----GC-A 539 (595)
Q Consensus 472 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 539 (595)
..++..+...|...|++++|...+++..+.... . ...++..+...+...|++++|..++++.++. +. .
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 225666667777777777777777666543100 0 1345666677777777777777777776652 10 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
....++..+..+|.+.|++++|.+.++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11345666777777777777777777777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=131.78 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-
Q 007640 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD----IVTYNTLISGLCRVNEVARGHELLKEVKFKS---EFS- 329 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~- 329 (595)
......+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++..... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667777888888999999999998887652 223 3567778888888899999988888765321 111
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGI-KPS----AVTFNVLIDGFGKVGN--------------------MV 384 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~ 384 (595)
....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1245677778888888888888888888776420 011 3366777777888888 88
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 007640 385 SAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL-SPN----VYTFTILINALCKENRLN 454 (595)
Q Consensus 385 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~ 454 (595)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 887777766432 1111 134566777777788888888887777654310 112 235666777777778888
Q ss_pred HHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 007640 455 DARRFLKQLKWNDLV-PK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 524 (595)
+|...+++....... ++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888777776543111 11 44667777777777888888777777664311 111 445666777777777888
Q ss_pred HHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 007640 525 EAISIFNKMLRIGCAPD-----DITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~ 562 (595)
+|...+++..+..-... ..++..+...+...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 88877777776432222 123444444555555444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=132.35 Aligned_cols=205 Identities=15% Similarity=0.097 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhccCC----C-Ccc
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN----SPMIEFFVSSCIRAGKCDAAKGLLSQFRPG----E-VTM 224 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~ 224 (595)
.....+..+...+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...++++... + .+.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456677778888889999999999999888864 334 356777888888888888888888876432 1 122
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-PD----TWTFNILIQGLSRIGE--------------------VKK 279 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 279 (595)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3456777888888888888888888877653211 11 3366677777777777 666
Q ss_pred HHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhH
Q 007640 280 AFEFFYDMGSF----GCSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDK 350 (595)
Q Consensus 280 A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~ 350 (595)
|...+.+..+. +..+ ...++..+...+...|++++|.+.+++......-.++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 66666654321 1001 1224445555555555665555555554322100111 1244444555555555555
Q ss_pred HHHHHHHHH
Q 007640 351 ATGIYNEMN 359 (595)
Q Consensus 351 A~~l~~~m~ 359 (595)
|...+++..
T Consensus 246 A~~~~~~al 254 (406)
T 3sf4_A 246 ASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=132.76 Aligned_cols=203 Identities=14% Similarity=0.060 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHhccCC----C-CccCH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS----PMIEFFVSSCIRAGKCDAAKGLLSQFRPG----E-VTMST 226 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 226 (595)
...+..+...+...|++++|+..|+++.+.+ +.+. .++..+...|...|++++|...++++.+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455567788899999999999999998864 3343 46788888899999999999998887542 1 13345
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLY-----SQPDTWTFNILIQGLSRIGE-----------------VKKAFEFF 284 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 284 (595)
.++..+...|...|++++|...|++..+.. ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888888889999999998888876541 11234467777778888888 77777766
Q ss_pred HHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHH
Q 007640 285 YDMGSF----GCS-PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 285 ~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
++..+. +-. ....++..+...+...|++++|.+.+++......-.++ ...+..+...|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 655321 100 11234455555555666666666665554432100001 124444555555555555555555
Q ss_pred HHHH
Q 007640 356 NEMN 359 (595)
Q Consensus 356 ~~m~ 359 (595)
++..
T Consensus 287 ~~al 290 (411)
T 4a1s_A 287 KRTL 290 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=109.51 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+...|..+...|...|++++|+..|++..+.. |-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56678888888888888888888888877764 556778888888888888888888888887766533 5667777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
.+...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++.++.. +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887763 3367778888888888888888888888888764 5667788888888888888888
Q ss_pred HHHHHHHHHhcCC
Q 007640 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
|++.++++++..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 8888888887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-12 Score=125.21 Aligned_cols=277 Identities=15% Similarity=0.082 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCCHhhH
Q 007640 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD----IVTYNTLISGLCRVNEVARGHELLKEVKFK----SEFSPDVVTY 335 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~ 335 (595)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +..+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444555666666666666666665432 112 234555555666666666666666554321 0001112344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGI-KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
..+...+...|++++|...+++..+... .++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4555555555555555555555433100 00100 002244444445555
Q ss_pred cCC--------------------HHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 007640 415 NGQ--------------------LNQGLKLCDEMKGK----N-LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL- 468 (595)
Q Consensus 415 ~g~--------------------~~~A~~l~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~- 468 (595)
.|+ +++|...+++.... + .+....++..+...+...|++++|...+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555443221 1 011133556666667777777777777776643210
Q ss_pred ----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007640 469 ----VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-PD----KVTFTILIIGHCMKGRMVEAISIFNKMLRI--- 536 (595)
Q Consensus 469 ----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 536 (595)
.....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 111336777788888888888888888877643110 11 456777888888899999999988887762
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 537 -GC-APDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 537 -g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+. .....++..+..+|.+.|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 1113467788889999999999999999888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-10 Score=112.36 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFG-------KVGNM-------VSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666666666542 345555655555544 34664 7777777777763112345577777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-HcCCHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGKNLSPNVY-TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC-KAGNVDEAN 492 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 492 (595)
.|++++|..+|++..+.. +-+.. +|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877642 22233 677777777778888888888888776543 24444544333322 258888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 493 VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAP--DDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.+|++..+.. +-+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877652 2356777778888888888888888888888752 344 35677777888888888888888888888
Q ss_pred hcCCCC
Q 007640 570 EDQNLQ 575 (595)
Q Consensus 570 ~~~~~~ 575 (595)
+..+.+
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 777644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-12 Score=124.27 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=136.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHH
Q 007640 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPD----TWTFNILIQGLSRIGEVKKAFEFFYDMGSF----GCS-PDIVTY 299 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~ 299 (595)
+......+...|++++|...|++..+..+. + ...+..+...+...|++++|...+++..+. +-. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455555666666666666666655321 2 245556666666666666666666654321 111 113455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 007640 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGK--------------------MDKATGIY 355 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~l~ 355 (595)
..+...+...|++++|.+.+++......-.++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 56666666777777777776665432100111 2356666666777777 66666666
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007640 356 NEMNSC----GI-KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY-LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 356 ~~m~~~----g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
++..+. +. ......+..+...+...|++++|...+++..+... .++.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 554321 00 00122344444444555555555555444432100 0000
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 007640 430 GKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-P----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK--- 501 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 501 (595)
.....++..+...+...|++++|...+++....... . ...++..+...+...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 001123444444444455555555544443321100 0 1334555566666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 502 -RCK-PDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 502 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.. ....++..+...+...|++++|...++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 0133555666666667777777777776665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=123.94 Aligned_cols=232 Identities=9% Similarity=-0.059 Sum_probs=165.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSC----GIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY--LPDVVTFS 406 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~--~p~~~~~~ 406 (595)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+. +. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888887653 1111 2356677777788888888888877776542 10 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNL-SPN----VYTFTILINALCKENRLNDARRFLKQLKW-----NDLVPKPFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 476 (595)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888889999999988887754310 011 24677888889999999999999988876 23133467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEK----RCKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIGCAP-DDITVNSL 548 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l 548 (595)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987753 111122335667778888888 77788777765 2223 34567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 549 ISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
...|.+.|++++|.+.++++.+..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-10 Score=111.65 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 173 DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR-------AGKC-------DAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 173 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777754 5677777777766653 4664 6677777776652113455566667777777
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTW-TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC-RVNEVARGH 316 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~ 316 (595)
.|++++|..+|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776664321 222 56666666666666666666666666432 222333332222211 145666666
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG-IKP--SAVTFNVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
++|+...... +.+...|..++..+.+.|++++|..+|++..+.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555432 2234555555555555566666666666655532 233 2334555555555555555555555555
Q ss_pred Hh
Q 007640 394 LS 395 (595)
Q Consensus 394 ~~ 395 (595)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=127.46 Aligned_cols=194 Identities=12% Similarity=0.003 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNM-VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444445555555555 55555555544432 1234455555555555555555555555555442 3445555555
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--C
Q 007640 445 NALCKE---------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA--------GNVDEANVIVAEMEEKRCK--P 505 (595)
Q Consensus 445 ~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p 505 (595)
..|... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 5555555555555554422 455555555555555 5566666666665554210 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...|++++|++.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666665543 33445555566666666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-11 Score=120.11 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----CHhhHH
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGC-SP----DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP-----DVVTYT 336 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~ 336 (595)
....+...|++++|...|++..+.-- .+ ...++..+...|...|++++|.+.+++......-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666777777777766653200 11 124555666666666666666666665543210011 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNSCGIK-PS----AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY-LPDVVTFS 406 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 406 (595)
.+...|...|++++|.+.|++..+..-. ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666655431000 01 123444444445555555555444444331 11 11223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+...|...|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=124.92 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------C-CC
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF------GY-LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK------N-LS 434 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~ 434 (595)
.+..+...|...|++++|...+++..+. +. +.....+..+...|...|++++|...+++..+. + .+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444331 11 112334455555555555555555555554432 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWN------DLVP-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK------ 501 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 501 (595)
....++..+...+...|++++|.++++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22344555566666666666666666665443 1111 2345666667777777777777777766642
Q ss_pred -CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 502 -RCKPDK-------VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 502 -g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...+.. ..+..+...+...+.+.+|...++...... +....++..++.+|.+.|++++|.++++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 011111 112222233334555555666666655432 344567788888888999999999998888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-09 Score=111.83 Aligned_cols=396 Identities=8% Similarity=0.015 Sum_probs=273.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC---HhHHHHH
Q 007640 172 HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN---ADEAVYM 248 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 248 (595)
..+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666655 779999999999999999999999999999875 57788899999999888888 9999999
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHh-hCCC-CCC-HHHHHHHHHHHH---------
Q 007640 249 FKEYFRLYS-QPDTWTFNILIQGLSRIGEV--------KKAFEFFYDMG-SFGC-SPD-IVTYNTLISGLC--------- 307 (595)
Q Consensus 249 ~~~m~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~t~~~li~~~~--------- 307 (595)
|++.+...+ .|++..|...+....+.++. +.+.++|+... ..|. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999988652 37888888888766665543 33457777665 3465 554 467777766543
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHH---HHHHH----------HhcCChhHHHHHHHHHHH--CCCC--------
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTS---VISGY----------CKLGKMDKATGIYNEMNS--CGIK-------- 364 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~---ll~~~----------~~~g~~~~A~~l~~~m~~--~g~~-------- 364 (595)
..++++.+.++|+.+.... ...-..+|.. +...+ -....++.|...+.++.. .++.
T Consensus 206 eq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2345788899999987421 1111233322 22111 001233445555555432 1211
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007640 365 -------P-----S---AVTFNVLIDGFGKVG-------NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 365 -------p-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|-..+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123444443222221 123355678887765 3457788888888888999999997
Q ss_pred -HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CC------------CHhhHHHHHH
Q 007640 423 -KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL---------VP------------KPFMYNPVID 480 (595)
Q Consensus 423 -~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------~p------------~~~~~~~li~ 480 (595)
.+|++.... +|.+...+...+....+.|++++|.++|+.+..... .| ...+|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999999874 466777788888888999999999999999875310 13 1346888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK-GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPN 559 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 559 (595)
...+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. ++-+...+...++.....|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888999999999999998761112233443333333344 4599999999999986 4567777888899888999999
Q ss_pred HHHHHHHHHHhcCC
Q 007640 560 EAFRIMQRASEDQN 573 (595)
Q Consensus 560 ~A~~~~~~~~~~~~ 573 (595)
.|+.+|+++++..+
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=104.38 Aligned_cols=166 Identities=15% Similarity=0.040 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
++.+|..+...+.+.|++++|++.|++..+.. |-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55667777777777777777777777776654 4566666666667777777777777666665443 334555666666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
.+...++++.|...+.+..+..+ .+...+..+...|.+.|++++|++.|++..+.. +.+..++..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665543 355566666666666666666666666665432 2345556666666666666666
Q ss_pred HHHHHHHHHh
Q 007640 315 GHELLKEVKF 324 (595)
Q Consensus 315 A~~~~~~~~~ 324 (595)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-11 Score=124.38 Aligned_cols=214 Identities=11% Similarity=-0.053 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM-DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455556666554332 34566677777777777777 77777777776653 334667777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--------CCH
Q 007640 391 ERMLSFGYLPDVVTFSSLIDGYCRN---------GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE--------NRL 453 (595)
Q Consensus 391 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~ 453 (595)
++..+.. |+...+..+...|... |++++|+..+++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 7777653 5667777777777777 88888888888877664 55677788888888877 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 454 NDARRFLKQLKWNDLV--PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
++|...+++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|+..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876531 367888888888888999999999998888763 2356677888888888888888887554
Q ss_pred H
Q 007640 532 K 532 (595)
Q Consensus 532 ~ 532 (595)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-12 Score=121.68 Aligned_cols=171 Identities=17% Similarity=0.081 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRL-------YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------G 291 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 291 (595)
...++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666666552 11223445556666666666666666666655432 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 007640 292 C-SPDIVTYNTLISGLCRVNEVARGHELLKEVKFK------SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC--- 361 (595)
Q Consensus 292 ~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--- 361 (595)
- +....++..+...|...|++++|.+.+++.... ...+.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555666666666666666555432 101122344555666666666666666666666542
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 362 ---GIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLS 395 (595)
Q Consensus 362 ---g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 395 (595)
+..| ...++..+...|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223455555566666666666666655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=102.14 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007640 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456667778888888888888888887653 45677888888888889999999999888877653 3677888888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988763 3467888888899999999999999999988864 556788889999999999999999
Q ss_pred HHHHHHHhcCCC
Q 007640 563 RIMQRASEDQNL 574 (595)
Q Consensus 563 ~~~~~~~~~~~~ 574 (595)
+.++++.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-10 Score=113.78 Aligned_cols=229 Identities=12% Similarity=0.008 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSCGI-KPS----AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY-LP-DVVTFS 406 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~ 406 (595)
....+...|++++|+..|++..+.-. .++ ..++..+...|...|+++.|...+++..+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777765310 112 345666777777777777777777766542 10 11 234667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGK----NLS-PNVYTFTILINALCKENRLNDARRFLKQLKW-----NDLVPKPFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 476 (595)
.+...|...|++++|...+++..+. +.+ ....++..+...|...|++++|...+++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7778888888888888888776542 111 1134677788888888999999888888776 4433 367788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEKR----CKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIGCAP-DDITVNSL 548 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l 548 (595)
.+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+.++++. +..+ ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998887642 11123445566666667777 77777777762 2222 23456788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007640 549 ISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+..|.+.|++++|.+.++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-09 Score=107.87 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHH
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSC----GIK--P-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY----LPDVVT 404 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~ 404 (595)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+... ......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444444555555555555444321 111 1 122333444455555555555555555443211 011234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLS--PNVYTFT----ILINALCKENRLNDARRFLKQLKWNDLVPK---PFMY 475 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 475 (595)
+..+...+...|++++|...+++....... ....... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555555566666666666666655432101 0111111 122335566666666666666554332111 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEK----RCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666666777777777776665432 211122 2445556666677777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=109.94 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=157.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--C---CC-CHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIYNEMNSCG--I---KP-SAVTFN 371 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~~~~ 371 (595)
....+...|++++|...+++........++ ..++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344456778888888888776643211122 3466777778888888888888887775421 0 11 234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 007640 372 VLIDGFGKVGNMVSAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG-----KNLSPNVYTFT 441 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~ 441 (595)
.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7788888888888888888776652 1111 234677788888889999999998888776 33 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC---C-CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLV---P-KPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPD-KVTFTIL 513 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~~~~l 513 (595)
.+...+.+.|++++|...+++..+.... + ....+..+...+...++ +++|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888899999999999999887664211 1 23345566666667777 77777777662 22222 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007640 514 IIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...|...|++++|...|+++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999988865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-09 Score=107.36 Aligned_cols=235 Identities=12% Similarity=0.005 Sum_probs=121.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHhccCC----CCc-cCHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSP----MIEFFVSSCIRAGKCDAAKGLLSQFRPG----EVT-MSTFMY 229 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 229 (595)
+..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++.... +.. ....++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888877654222222 4555566677777777777777766432 110 012234
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcC----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--C--CHHH
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRLY----SQ--P-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS--P--DIVT 298 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 298 (595)
..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.....-. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 556666777777777777777665431 11 1 2234455666666777777777777665532111 1 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHH
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT-----SVISGYCKLGKMDKATGIYNEMNSCGIKPS---AVTF 370 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~ 370 (595)
+..+...+...|++++|...+++.........+...+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 45555556666666666666665543210001101111 122234455666666666555543221110 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 007640 371 NVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
..+...+...|++++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444455555555444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-10 Score=122.64 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+..+|+.|...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.+.. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567777777777777777777777776653 445667777777777777777777777777765532 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
+|.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..|++.++.. +-+...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 7777777888877777777653 2256677777777778888888888888777754 4456777777778888888887
Q ss_pred HHHHHHHHHh
Q 007640 561 AFRIMQRASE 570 (595)
Q Consensus 561 A~~~~~~~~~ 570 (595)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-09 Score=95.71 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345556666666777777777777766543 34566666677777777777777777777666543 3556666666677
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776665432 3345566666666666666666666666665543 23455666666666666666666
Q ss_pred HHHHHHHHH
Q 007640 352 TGIYNEMNS 360 (595)
Q Consensus 352 ~~l~~~m~~ 360 (595)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=100.92 Aligned_cols=200 Identities=11% Similarity=-0.060 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999998886543677777778889999999999999999988764 44677888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007640 445 NALCKENRLNDARRFLKQLKWNDLVPKP-------FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---KVTFTILI 514 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li 514 (595)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999998876533 44 45788888888999999999999999876 454 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
..+... +..+++++...+ ..+...+..+. ....+.+++|+..++++.+..+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 777544 344556666554 34455554443 3345678999999999999876553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-09 Score=96.82 Aligned_cols=207 Identities=8% Similarity=-0.059 Sum_probs=161.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
.|...+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688889999999999999999999999987633778888889999999999999999999999864 23567888999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 007640 410 DGYCRNGQLNQGLKLCDEMKGKNLSPNV-------YTFTILINALCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVID 480 (595)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 480 (595)
..|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++.+.+. . +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999998864 4455 5588888889999999999999999987642 2 3567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
.|...| ..+++++...+ ..+...|.... ....+.+++|+..+++.++.. +-+..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 876544 44556666553 23455554443 334577999999999999864 3344444433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-10 Score=120.03 Aligned_cols=167 Identities=12% Similarity=-0.006 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+..+|+.|..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.+ +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467899999999999999999999999999876 6678999999999999999999999999998765 45788999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
.+|.+.|++++|++.|++.++..+ -+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999998765 478899999999999999999999999998653 335788999999999999999
Q ss_pred HHHHHHHHHHh
Q 007640 314 RGHELLKEVKF 324 (595)
Q Consensus 314 ~A~~~~~~~~~ 324 (595)
+|.+.++++..
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-10 Score=108.37 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=157.5
Q ss_pred HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 007640 343 CKLGKMDKATGIYNEMNS-------CGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF------GY-LPDVVTFSSL 408 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~l 408 (595)
...|++++|+.+|++..+ .+.+....++..+...|...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 355777777777777654 122234567888999999999999999999998764 22 2235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHhh
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGK------N-LSPNVYTFTILINALCKENRLNDARRFLKQLKWN------DLVP-KPFM 474 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 474 (595)
...|...|++++|...+.+.... . .+....++..+...|...|++++|...++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1 1334567888889999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEK-------RCKPD-KVTFTILIIGHCMKGR------MVEAISIFNKMLRIGCAP 540 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p 540 (595)
+..+...|...|++++|..+++++.+. ...+. ...|..+...+...+. +.++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998763 11222 2233333333333222 2333333322211 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 541 DDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...++..++.+|...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=105.74 Aligned_cols=135 Identities=18% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRL------YS-QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------G- 291 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 291 (595)
..++..+...+...|++++|+..|++..+. +. +....++..+...|...|++++|...|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455555555555555555555554432 11 112334555555555555555555555554422 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK------SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+....++..+...+...|++++|.+.+++.... ...+....++..+...+...|++++|...|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112334455555555555555555555554432 10111234555666666666666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-09 Score=100.95 Aligned_cols=159 Identities=11% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSC----GIKPS-AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GYLP-DVVTFSSLID 410 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~ 410 (595)
.|...|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|...+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666555431 11111 234555555555555565555555554432 1000 0223444444
Q ss_pred HHHHc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------hhHHHH
Q 007640 411 GYCRN-GQLNQGLKLCDEMKGKNLS-PN----VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP------FMYNPV 478 (595)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 478 (595)
.|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...+++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 44443 5555555555444332100 00 123444444444444444444444444443222111 023334
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007640 479 IDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~ 499 (595)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-08 Score=84.22 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 355566666677777777777777665542 255666777777777777777777777776653 335666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|..+++++.+.. +.+...+..++.++.+.|++++|.+.++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888777754 44566777778888888888888888887776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-07 Score=89.86 Aligned_cols=242 Identities=11% Similarity=0.059 Sum_probs=140.6
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhH
Q 007640 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (595)
-..-.|++..++.-...+ ...........+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 334567777776633222 1122334445566777777776631 11233433444443333 221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 245 AVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554 34555566777777778888888888877654432 1245666677777778888888888887776
Q ss_pred hcCCCCC-----CHhhHHHHHHHHH--h--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 324 FKSEFSP-----DVVTYTSVISGYC--K--LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERML 394 (595)
Q Consensus 324 ~~~~~~p-----~~~~~~~ll~~~~--~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 394 (595)
... | +..+...|+.++. . .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 164 ~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 5 2444455554422 2 23777888888887654 3443333444446777777777777777654
Q ss_pred hCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 395 SFG---------YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 395 ~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
+.- -+-|..++..+|......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 02345556455555555565 667777777665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-07 Score=88.25 Aligned_cols=244 Identities=10% Similarity=0.010 Sum_probs=113.5
Q ss_pred HHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK 279 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (595)
-..-.|.+..++.-...+... ........+.++|...|++... ....|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 334456666666644443321 1222333344666666655531 11223333333333332 211
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 280 AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
|...|++..+.+ .++..++..+...+...|++++|++++.+....+...-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555433 3444444455566666666666666666654332111234455555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 360 SCGIKP-----SAVTFNVLIDGF--GKVG--NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 360 ~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 34 234444444442 1122 556666666665443 23322223333355555666666555554433
Q ss_pred CC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 431 KN---------LSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 431 ~~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
.. -+.|..++..++......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02234444333333333444 5555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-08 Score=96.10 Aligned_cols=166 Identities=9% Similarity=-0.090 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc-----cCHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSD----GHLPN-SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT-----MSTF 227 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 227 (595)
.|......|...|++++|...|++..+. |-+++ ..+|..+...|.+.|++++|+..+++..+.... ....
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566666777777777777666542 21111 345666666666666666666666655432100 0123
Q ss_pred HHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-----
Q 007640 228 MYNSLLNALVKQ-NNADEAVYMFKEYFRLYSQP-D----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----- 296 (595)
Q Consensus 228 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 296 (595)
+++.+...|... |++++|+..|++.++..+.. + ..+++.+...+.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555555554 55666655555554432110 0 233445555555555555555555555443211111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 297 -VTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 297 -~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
..|..+..++...|++++|...+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 023444444555555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-06 Score=90.48 Aligned_cols=370 Identities=10% Similarity=-0.055 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhccCC-CC-ccCHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-CDAAKGLLSQFRPG-EV-TMSTFMYNSL 232 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 232 (595)
..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.+... |. ..+..+|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3445555554443 6666666666666653 3566666666665555542 23344555554431 21 2345555555
Q ss_pred HHHHH----HcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 233 LNALV----KQNNADEAVYMFKEYFRLYSQPDT-WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 233 i~~~~----~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 307 (595)
+..+. ..++.+.+..+|++.+... ..+. ..|..... +........+..++.+ .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~-------------------~- 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGKKIVGD-------------------T- 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHHHHHHH-------------------H-
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHHHHHHH-------------------H-
Confidence 55443 2345566666666666521 1111 11111111 0011111111111111 1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG--K-----MDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+.+..|..+++.+...- -..+...|...+..-...+ - .+.+..+|++++... +.+...|...+.-+...
T Consensus 150 -~~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 150 -LPIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 112333344443333210 0012334555444322211 1 345667888877643 45567777777777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------CCCC---CHHHHHHHHHHHH
Q 007640 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK---------NLSP---NVYTFTILINALC 448 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~p---~~~~~~~ll~~~~ 448 (595)
|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+. +..+ ....|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 8899999999888876 33332222 22222121222 2222111 0001 1244566666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
+.++.+.|..+|+.. .. ...+..+|...+..-...+ +.+.|..+|+...+.. +-+...+...+.-....|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778899999999998 32 2234445543333333334 6999999999988753 224555666777777899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 528 SIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999872 3567788888877888999999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.8e-08 Score=87.42 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007640 386 AEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN----RLNDARRFLK 461 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~ 461 (595)
|...|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 44444455555555555555555555555443 34444444444444 3 5555555555
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 007640 462 QLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCM----KGRMVEAISIFNK 532 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 532 (595)
+..+.+ ++..+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 34445555555544 45566666666665554311 014455555555555 5566666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 007640 533 MLRIGCAPDDITVNSLISCLLKG-G-----MPNEAFRIMQRASEDQ 572 (595)
Q Consensus 533 m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 572 (595)
..+. +.+...+..|..+|... | ++++|+++++++.+.+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6554 12333455555555432 2 5666666666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-08 Score=82.83 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666667777777777777666543 3455556666666666666666666666655433 234555555666666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
..|++++|...++++.+..+ .+...+..+...+...|++++|...++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 66666666666666655442 344555555566666666666666665554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-08 Score=92.27 Aligned_cols=189 Identities=9% Similarity=-0.086 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CCCHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD---VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL--SPNVYTF 440 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~ 440 (595)
+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555566666666666666666666542 112 44555666666666666666666666655421 1123445
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 441 TILINALCK--------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTI 512 (595)
Q Consensus 441 ~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 512 (595)
..+..++.. .|++++|...|+++.+..+. +......+... ..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 555555555 66666666666666554321 12222111000 000000 0011345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCA-P-DDITVNSLISCLLKG----------GMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 574 (595)
+...|...|++++|+..|+++++.... + ....+..++.+|... |++++|+..++++++..+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 566777788888888888877764211 1 245666777777655 7778888888887776653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-08 Score=89.38 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
++..+......+...|++++|+..|+...+.. +.+...+... . +. ..........+.+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~-------------~~-~~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----N-------------VD-KNSEISSKLATELAL 62 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----H-------------SC-TTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----h-------------hc-chhhhhHHHHHHHHH
Confidence 34455556667788899999999998888753 2233333330 0 00 001112223344666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--H
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--V 312 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~ 312 (595)
.+.+.|++++|+..|++.++..+ .+...+..+...+...|++++|...|++..+.. +-+..++..+...|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666666666553 356666666666666666666666666666432 2245556666655544432 2
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
+.+...++.... ..|....+..+..++...|++++|...|++..+. .|+......+
T Consensus 141 ~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 141 KKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 334444444321 1222223333444555566777777777776653 4555444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-08 Score=94.04 Aligned_cols=188 Identities=10% Similarity=-0.010 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhccCCCC--ccCHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV--TMSTFM 228 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 228 (595)
.+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++.+.|++++|+..|+++.+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 466677777888888888888888888887754 333 66777788888888888888888888876422 122456
Q ss_pred HHHHHHHHHH--------cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 229 YNSLLNALVK--------QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 229 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
+..+..++.. .|++++|+..|+++++..+. +......+.......+.. ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~------------------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL------------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH------------------HHHHH
Confidence 6677777777 88888888888888776542 222222211100000000 01133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhc----------CChhHHHHHHHHHHHC
Q 007640 301 TLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKL----------GKMDKATGIYNEMNSC 361 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~----------g~~~~A~~l~~~m~~~ 361 (595)
.+...|.+.|++++|+..|+.+....+-.+ ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 455666666777777777666655431111 123455555566544 6667777777776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-07 Score=85.93 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=100.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007640 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG----QLNQGLKLCD 426 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~~ 426 (595)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 44455555555555566666666666655543 34455555555554 4 5666666666
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 007640 427 EMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCK----AGNVDEANVIVAE 497 (595)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~~ 497 (595)
+..+.| +...+..|...|.. .+++++|.+++++..+.+.. .++..+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 44555555555554 56666666666666655421 014566666666666 5667777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMK-G-----RMVEAISIFNKMLRIG 537 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 537 (595)
..+. ..+...+..|...|... | ++++|..+|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665 12344555555555542 2 6777777777776665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-08 Score=103.82 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887753 3357788889999999999999999999998774 55788888999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 007640 460 LKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---GRMVEAISIFNKMLRI 536 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (595)
+++..+... .+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++.++.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887763 367888999999999999999999999988764 23677888888899998 9999999999999886
Q ss_pred C
Q 007640 537 G 537 (595)
Q Consensus 537 g 537 (595)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=108.77 Aligned_cols=171 Identities=10% Similarity=-0.089 Sum_probs=83.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007640 378 GKVGNMVSAEYMRERML--------SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
...|++++|...+++.. +.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 211 2233445555555555555555555555554432 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 450 ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISI 529 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 529 (595)
.|++++|.+.|++..+.+.. +...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544322 34455555555555555555 55555555442 11344555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 530 FNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 530 ~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
|+++++.. +-+...+..+..++..
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHhhcccC-cccHHHHHHHHHHHHc
Confidence 55554432 1123344444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-08 Score=88.98 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhh
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSS----------------LIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..+......+...|++++|...|++..+.. | +...|.. +..+|.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445556778889999999988888753 3 3345555 66667777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 007640 431 KNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN--VDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 508 (595)
.. |-+...+..+...+...|++++|...++++.+.++. +..+|..+...|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 53 445666777777777777777777777777665532 56666666666655443 3334444444331 122222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
.+.....++...|++++|+..|++.++. .|+.....
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 3333444555567777777777776653 45554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-07 Score=84.60 Aligned_cols=192 Identities=13% Similarity=0.013 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC-HHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYL-P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS-PN-VYTFT 441 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~-~~~~~ 441 (595)
+...+..+...+...|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.... +. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667788888888888888888764311 1 1356777788888888888888888888765311 11 12444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 442 ILINALCK------------------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 442 ~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
.+..++.. .|++++|...|+++.+..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 45555544 34555566666555544321 122221111000 000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
......+...+.+.|++++|+..|+++++.. +.+ ...+..++.+|.+.|++++|++.++++...++...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0111345667889999999999999999853 222 256888999999999999999999999988765443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-06 Score=85.94 Aligned_cols=358 Identities=8% Similarity=-0.017 Sum_probs=213.9
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCC-chHHHHHHHHHHH-CCC-CCCHHHHHHHHHHHH----hcCC
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGL-HDSVQVVFDYMRS-DGH-LPNSPMIEFFVSSCI----RAGK 206 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~-~~~A~~~~~~m~~-~~~-~~~~~~~~~li~~~~----~~g~ 206 (595)
++.+.+..+|+-.... .|++..|..-+....+.+. .+....+|+.... .|. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6777788888766543 2699999999988877763 4567888888776 342 457788888887654 3467
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYD 286 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (595)
.+.+..+|++++......-...|......- +......+..++.+.. +.+..|..++++
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 889999999998742111122233222221 1122223333332221 122233333333
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 287 MGSFGCSPDIVTYNTLISGLCRV--NE-----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 287 m~~~g~~p~~~t~~~li~~~~~~--g~-----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+...--..+...|...+..-... +- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++..
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32100001223444444432211 00 344667788776643 3456677777888888889999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 360 SCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF---------GY---LPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 360 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---------g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
.. +.+...+. .|....+.++. ++.+.+. +. ......|...+..+.+.+..+.|..+|++
T Consensus 241 ~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 241 EM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 33332222 12222111111 2222211 00 01124567777777778889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007640 428 MKGKNLSPNVYTFTILINALCK-ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD 506 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 506 (595)
. ... ..+...|......-.. .++.+.|..+|+...+.- +.++..+...++...+.|+.+.|..+|+++. ..
T Consensus 312 A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~ 383 (493)
T 2uy1_A 312 L-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KT 383 (493)
T ss_dssp H-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CB
T ss_pred h-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH
Confidence 9 321 2344455432222222 346999999999988754 2245567778888889999999999999973 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 507 KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...|...+.--...|+.+.+..+++++.+
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788888777788999999999998875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-07 Score=86.58 Aligned_cols=222 Identities=10% Similarity=-0.024 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG--NMVSAEYMRERMLSFGYLPDVVTFSSLIDGY----CRN---GQLN 419 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~~ 419 (595)
++|+++++.++... +-+...|+.--.++...| ++++++..++.+.... +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555432 222333444444444444 5555555555555432 11233333332222 233 4566
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC------HHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN--DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN------VDEA 491 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 491 (595)
+++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++.+.++++.+.++. |...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665543 445555555555555556555 666666666665543 55556555555555554 6666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVE-AISIFNKMLRIG--CAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
++.+++++.... -|...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++++|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777766666532 266666666666666665333 444555544322 1345566667777777777777777777776
Q ss_pred Hh-cCCCC
Q 007640 569 SE-DQNLQ 575 (595)
Q Consensus 569 ~~-~~~~~ 575 (595)
.+ .+++.
T Consensus 285 ~~~~Dpir 292 (306)
T 3dra_A 285 KSKYNPIR 292 (306)
T ss_dssp HHTTCGGG
T ss_pred HhccChHH
Confidence 65 34433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-08 Score=107.95 Aligned_cols=131 Identities=10% Similarity=-0.020 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++..+.. +-+...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 334444445555555555555555555444432 244444455555555555555555555544321 113344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+.+.|++++ .+.|++..... +.+...|..+..++.+.|++++|++.|++..+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 5555555555 55555544332 22334455555555555555555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=91.77 Aligned_cols=166 Identities=15% Similarity=0.054 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVI 479 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li 479 (595)
+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556667777778888888888888877664 4566777778888888888888888888776554 333322 2223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA-PDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~ 558 (595)
..+...++.++|.+.+++..+.. +.+...+..+...+...|++++|+..|+++++.... .+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33556677777888888877663 336777788888888888888888888888875311 1256778888888888888
Q ss_pred HHHHHHHHHHHh
Q 007640 559 NEAFRIMQRASE 570 (595)
Q Consensus 559 ~~A~~~~~~~~~ 570 (595)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=84.00 Aligned_cols=160 Identities=10% Similarity=0.050 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH-HH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA-LV 237 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 237 (595)
+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445556666677777777776665543 4455666666666667777777777776665543 233333222211 11
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP-DIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~ 316 (595)
..+....|+..|++.++..+ .+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223345555666555443 245555566666666666666666666655432111 1334555555555555555555
Q ss_pred HHHHHH
Q 007640 317 ELLKEV 322 (595)
Q Consensus 317 ~~~~~~ 322 (595)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=83.99 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG-LS 272 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~ 272 (595)
+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|+..|++..+..+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4455566667777777777777776543 34566667777777777777777777777655433 33332222111 11
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++....+-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233455555555321 223455555555666666666666666655543311112335555555556666666666
Q ss_pred HHHHHH
Q 007640 353 GIYNEM 358 (595)
Q Consensus 353 ~l~~~m 358 (595)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-07 Score=89.17 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 232 (595)
.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...++++.... |+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 456677788888899999999999999988865 6677888889999999999999999999887753 344333 233
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS-PDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~ 311 (595)
...+...++.+.|...|++.....+ .+...+..+...+...|++++|...|.++.+..-. .+...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3346677788888888888887765 57788888888888888888888888888764211 125567777777777787
Q ss_pred HHHHHHHHHHHH
Q 007640 312 VARGHELLKEVK 323 (595)
Q Consensus 312 ~~~A~~~~~~~~ 323 (595)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-06 Score=82.44 Aligned_cols=165 Identities=13% Similarity=0.023 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNL-SPNV----YTFTILINALCKENRLNDARRFLKQLKWNDLV-PK----PFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 476 (595)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999998876431 2221 12334666667778999999999998874322 22 23689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEE----K-RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD-DITV 545 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~ 545 (595)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+.++++.++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999874 1 11222 237788999999999999999999988862 22232 6788
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhc
Q 007640 546 NSLISCLLKGGM-PNEAFRIMQRASED 571 (595)
Q Consensus 546 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 571 (595)
..++.+|.+.|+ +++|.+.++++.+-
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-08 Score=85.84 Aligned_cols=141 Identities=7% Similarity=-0.082 Sum_probs=78.1
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|+..+....... +.+...+..+...|.+.|++++|.+.+++..+.++. ++.+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334455666666666554431 122334445556666666666666666666655432 456666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISI-FNKMLRIGCAPDDITVNSLISCLLKGG 556 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~l~~~~~~~g 556 (595)
...|++..+.. +-+...|..+...|.+.|++++|.+. ++++++.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666542 12455666666666666666554443 45555543 334455555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-06 Score=81.16 Aligned_cols=223 Identities=4% Similarity=-0.041 Sum_probs=142.6
Q ss_pred HHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHhccCCCCccCHHHHHHHHHHH----HHc
Q 007640 167 CEMGLH-DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG--KCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL----VKQ 239 (595)
Q Consensus 167 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 239 (595)
.+.|.+ ++|+.+++.++..+ +-+..+|+.--..+...| +++++++.++.+...+ +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 344444 58888888888876 566777888777777777 8888888888887654 33445555444444 444
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 007640 240 ---NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK--KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--- 311 (595)
Q Consensus 240 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 311 (595)
+++++++.+++++.+..+ .+-.+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 678888888888887765 47777877777777777777 7888888877653 3356666655555555554
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007640 312 ---VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDK-ATGIYNEMNSCG--IKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+..++.+.+ -+.+...+..+..+|.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 666666666666543 4456666666666666665333 333444433321 12344555556666666666666
Q ss_pred HHHHHHHHHh
Q 007640 386 AEYMRERMLS 395 (595)
Q Consensus 386 A~~~~~~m~~ 395 (595)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=91.70 Aligned_cols=155 Identities=8% Similarity=0.009 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHh
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVP-----KPF 473 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 473 (595)
+|+.+...|...|++++|+..|++..+. |-+. -..++..+...|.. |++++|+..+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555555556666666666665554322 1000 12345555666655 66777766666654321100 134
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------H
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEK----RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD------D 542 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~ 542 (595)
+++.+...|.+.|++++|+..|++..+. +..+. ...+..++.++...|++++|...|++.+ . .|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHH
Confidence 5666677777777777777777776542 11111 1244555556666677777777777766 3 221 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 007640 543 ITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.....++.++ ..|+.+.+.+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 2334444444 4566555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=98.44 Aligned_cols=152 Identities=8% Similarity=-0.069 Sum_probs=76.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHH
Q 007640 170 GLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 170 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (595)
|++++|++.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45556666666555543 3445555666666666666666666666655543 234555555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 007640 250 KEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRV---NEVARGHELLKEVKFK 325 (595)
Q Consensus 250 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~~~~~ 325 (595)
++..+..+ .+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++....
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66555543 345555566666666666666666666655432 22345555555556555 6666666666655544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-06 Score=79.83 Aligned_cols=202 Identities=11% Similarity=0.025 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc--cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHH
Q 007640 191 SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT--MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT--WTFNI 266 (595)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 266 (595)
...+..+...+.+.|++++|+..|+++.+.... .....+..+..++.+.|++++|+..|+++++..+.... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555556666667777777766666543211 11345555666666667777777777666665432111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhc
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKL 345 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~ 345 (595)
+..++...|.. .+ ..|..+...+...|++++|...|+++.... |+. ..+......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----
Confidence 33333332210 00 011112222334567777777777776643 332 222111100
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007640 346 GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQG 421 (595)
Q Consensus 346 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A 421 (595)
..+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|+.++|
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00000000 011245566777788888888888777642 32 24566777788888888888
Q ss_pred HHHHHHHhhCC
Q 007640 422 LKLCDEMKGKN 432 (595)
Q Consensus 422 ~~l~~~m~~~~ 432 (595)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 88888776653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.8e-08 Score=93.01 Aligned_cols=201 Identities=11% Similarity=-0.020 Sum_probs=139.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
.|++++|.+++++..+.. +.. +.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355667777776665421 110 111 46666666666553 345666777777777
Q ss_pred HHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHHcCCHHHHHH
Q 007640 424 LCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDL---VP--KPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 424 l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.|.+..+. +-++ -..+|..+...|...|++++|...+++..+... .+ ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77765432 1111 134677888899999999999999998754311 11 14578888899988 99999999
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 007640 494 IVAEMEEKRCKP-D----KVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD-DITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 494 l~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.|++..+..... + ..++..+...|...|++++|+..|++.++. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987541111 1 457888999999999999999999999873 21111 2366777888888999999999
Q ss_pred HHHHHHhcCC
Q 007640 564 IMQRASEDQN 573 (595)
Q Consensus 564 ~~~~~~~~~~ 573 (595)
.+++++ ..+
T Consensus 217 ~~~~al-~~p 225 (307)
T 2ifu_A 217 CVRESY-SIP 225 (307)
T ss_dssp HHHHHT-TST
T ss_pred HHHHHh-CCC
Confidence 999998 554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-06 Score=82.11 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CC--H
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV------YTFTILINALCKENRLNDARRFLKQLKWNDLV---PK--P 472 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~ 472 (595)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566777888888888888777665322 22 22334555667778888998888887653221 11 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEK-RCKPD-----KVTFTILIIGHCMKGRMVEAISIFNKMLRIG----CAP-D 541 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~ 541 (595)
.+|+.+...|...|++++|...++++.+. ...|+ ..++..+...|...|++++|+.++++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888888899999999999999887621 00122 2578888888999999999999999887631 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007640 542 DITVNSLISCLLKGGMPNEA-FRIMQRASE 570 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 570 (595)
..+|..++.+|.+.|++++| ...++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=80.05 Aligned_cols=126 Identities=8% Similarity=-0.087 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++...... .+...+..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34455566667777777777776653 44666677777777777777777777777665542 25566666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDK----------------VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..|++++|.+.|++..+.... +. ..+..+..++...|++++|...|+++++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777776665211 12 4556666666667777777776666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=81.15 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=54.2
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
..|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++..+ .+..+|..+..+|...|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555554421 11222334455555555555555555555555443 245555555555555555555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
.|++..+.. +-+...+..+...|.+.|++++|.
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 555554331 123444555555555555544433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=88.59 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
+...+..+...+...|++++|...+++.++.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666777777788888887777777653 2366777788888888888888888888887764 556778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 525 (595)
+|...|++++|...+++..+.+.. +...+...+....+ ..++. -+..........+......+.. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888887654321 11111112222111 11111 1222333334445444444432 2 3688999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCC
Q 007640 526 AISIFNKMLRIGCAPDD-ITVNSLISCLLKG-GMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 526 A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 573 (595)
|++.+++..+. .|+. .....+...+.+. +.+++|.++|+++.+...
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999888764 4544 4444554455554 678899999998887543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.2e-06 Score=80.04 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=57.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007640 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVV----TYTSVISGYCKLGKMDKATGIYNEMNSCGIK-PS----AVTFNVL 373 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~l 373 (595)
+..+...|++++|.+++++........|+.. .+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666666554332222211 2223444444555566666666665542211 11 1134555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 374 IDGFGKVGNMVSAEYMRERMLS----F-GYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+..+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555555555555442 1 10111 123444444455555555555544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=73.97 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...+++...... .+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456666677778888888888887776543 257778888888888888888888888887763 33677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNS--LISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...|++++|...++++++.. +.+...+.. ++..+.+.|++++|++.+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888999988888888754 344555533 344477788999999988876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-06 Score=76.22 Aligned_cols=128 Identities=8% Similarity=-0.147 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALC 448 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 448 (595)
.+..+...+...|++++|...+++.. .|+...+..+...|...|++++|...+++..... +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 44566677788888888888888764 4577888888888888888888888888887764 556778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 449 KENRLNDARRFLKQLKWNDLVP---------------KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
..|++++|...+++..+..... ....+..+..++.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888887765321 1267788888888888888888888888876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-06 Score=71.64 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++.++.+ +.+...|..++.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244555555555555555555555555555543 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|++.|+++++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-07 Score=87.65 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...+..+...+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778888889999999999999999988865 5578888888899999999999999999988764 45677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
.++...|++++|+..|++..+..+. +...+...+....+.. ++.. +..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8999999999999999888765421 1111111111111111 1111 111222233334444333322 2 257777
Q ss_pred HHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 007640 314 RGHELLKEVKFKSEFSPDV-VTYTSVISGYCKL-GKMDKATGIYNEMNS 360 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~-g~~~~A~~l~~~m~~ 360 (595)
+|.+.++...... |+. .....+...+.+. +.+++|.++|..+.+
T Consensus 153 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777665432 433 3333333334443 556777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=9e-07 Score=79.84 Aligned_cols=156 Identities=11% Similarity=-0.049 Sum_probs=73.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCH
Q 007640 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK----NL-SPNVYTFTILINALCKENRL 453 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~ 453 (595)
..|++++|..+++.+... .......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 1123445556666666666666666666655431 11 11223445555555566666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 007640 454 NDARRFLKQLKWN----DLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KVTFTILIIGHCMKGR 522 (595)
Q Consensus 454 ~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~ 522 (595)
++|...+++.... +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666655554332 1011 123345555555555555555555555442100 001 1123444455555555
Q ss_pred HHHHHHHHHHHHH
Q 007640 523 MVEAISIFNKMLR 535 (595)
Q Consensus 523 ~~~A~~~~~~m~~ 535 (595)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=70.14 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+......|.+.|++++|++.|++..+.++ .+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3455566666677777777777776666553 256667777777777777777777777766653 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
...|++++|++.|++.++.. +-+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 77777777777777777653 33444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-05 Score=75.62 Aligned_cols=222 Identities=7% Similarity=-0.054 Sum_probs=137.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN-G-QLNQG 421 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A 421 (595)
.+..++|++++++++... +-+...|+.--..+...| ++++++..++.+.... +-+..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344456777777766643 234444555555555556 4777777777776653 23555666655555555 5 66777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC------
Q 007640 422 LKLCDEMKGKNLSPNVYTFTILINALCKENRLN--------DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN------ 487 (595)
Q Consensus 422 ~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 487 (595)
+.+++.+.+.. +-|..+|+.-...+.+.|.++ ++.+..+++.+.++. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 77777777654 446666665555555544444 777777777776644 67777777777776665
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 007640 488 -VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM--------------------VEAISIFNKMLRIG-----CAPD 541 (595)
Q Consensus 488 -~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~p~ 541 (595)
++++++.+++++... +-|...|+.+-..+.+.|+. .+...+..++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 677888888877663 23666776666666665543 23333333333221 1356
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 542 DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...+..|++.|...|+.++|.++++.+.++
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 777888888888888889999998888643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-07 Score=75.82 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+..+...+.+.|++++|...|+++...++. ++..|..+..+|...|++++|...|++..+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3444444444455555555555544444321 34444444444444455555555544444432 113344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007640 519 MKGRMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (595)
..|++++|+..|++.++
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=74.17 Aligned_cols=129 Identities=6% Similarity=-0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677777778888888888888777754 4566777777777777777777777777776543 3456667777777
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNI--LIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 287 (595)
+...|++++|...|++..+..+ .+...+.. +...+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777777776543 24444432 333355666666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.1e-05 Score=73.80 Aligned_cols=176 Identities=6% Similarity=-0.028 Sum_probs=96.3
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc-C-CH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG-KCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-N-NA 242 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 242 (595)
+.+.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 333444456777777776655 455556666666666666 3666777666666554 34555666555555554 5 66
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 007640 243 DEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK--------KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--- 311 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 311 (595)
++++++++++++..+ .|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 666666666666553 35556655555444444444 5566666555432 2245555555444444443
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 007640 312 ----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 312 ----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 347 (595)
++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 455555555554433 3344555554444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.3e-06 Score=67.19 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|.+.++++..... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555555566666666666665554432 244555666666666666666666666665542 22455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
...|++++|...++++.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66666666666666666543 334444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-07 Score=77.22 Aligned_cols=96 Identities=13% Similarity=-0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...|+.+...++ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3444455555555555555555555554432 244555555555555555555555555555442 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=68.52 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777776643 4455666666666666677777766666665443 3345566666666
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 6666666666666666665543 2344444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=70.47 Aligned_cols=120 Identities=8% Similarity=-0.120 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466677778888888888888888888877754 4566777777777777778888877777776543 3456677777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
...+.+.|++++|...|++..+..+ .+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 7777777777777777777766543 23445555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-06 Score=68.45 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
...+..+...+...|++++|...+++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34555566666666667777666666665432 245666666777777777777777777766552 2245666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 558 (595)
+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777776653 34556666666666666553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=76.31 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCH--H
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG-FCKAGNV--D 489 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 489 (595)
...|++++|...+++..... +.+...+..+...|...|++++|...++++.+... .+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34566777777777666553 44566677777777777777777777777665542 245566666666 5666776 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
+|...++++.+.. +.+...+..+...+...|++++|...|+++++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777766653 224566666666777777777777777777664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-06 Score=77.58 Aligned_cols=128 Identities=8% Similarity=-0.081 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILIIGHCMK 520 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~ 520 (595)
+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444555555555554444332 221133333334445555555555554333220 000 12344444455555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 521 GRMVEAISIFNKMLRIGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
|++++|+..|++.......|. ......+..++.+.|+.++|...|+++....+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555555555543221122 22344444455555555555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=82.41 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455555555555666666666665555542 2245555555556666666666666666655543 33445555555566
Q ss_pred HhcCCHHHH
Q 007640 553 LKGGMPNEA 561 (595)
Q Consensus 553 ~~~g~~~~A 561 (595)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=77.32 Aligned_cols=156 Identities=16% Similarity=0.018 Sum_probs=81.0
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHhhHHHHHHHHHHcCCH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW----NDLV-PKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~ 488 (595)
..|++++|.++++.+... ......++..+...+...|++++|...+++... .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644333321 123445566666666666666666666666543 1111 1234556666666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC
Q 007640 489 DEANVIVAEMEEK----RCKP--DKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAPD----DITVNSLISCLLKGGM 557 (595)
Q Consensus 489 ~~A~~l~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~ 557 (595)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.++.. -..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665432 1011 12345555666666666666666666655310 0111 1234556666666666
Q ss_pred HHHHHHHHHHHHh
Q 007640 558 PNEAFRIMQRASE 570 (595)
Q Consensus 558 ~~~A~~~~~~~~~ 570 (595)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-06 Score=69.26 Aligned_cols=119 Identities=12% Similarity=-0.024 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44566777777777888888888887777654 4466677777777777777777777777766543 334666677777
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
.+...|++++|...|++..+..+ .+...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777777777777777766543 355566666666665554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-05 Score=76.32 Aligned_cols=162 Identities=7% Similarity=-0.080 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPD-----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC---SPD--IVTYNT 301 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 301 (595)
.+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..+++..+... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34455555556666555555544322110 01122333444555566666666665543211 111 235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH---hcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVK---FKSEFSP--DVVTYTSVISGYCKLGKMDKATGIYNEMNSCG----IKP-SAVTFN 371 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~---~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~~~~ 371 (595)
+...|...|++++|...+++.. ...+..+ ...++..+...|.+.|++++|+..+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5666666666666666665554 1110011 11355566666666666666666666654321 001 134455
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHH
Q 007640 372 VLIDGFGKVGNMVSA-EYMRERM 393 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A-~~~~~~m 393 (595)
.+..+|.+.|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555556666666665 4444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-06 Score=69.17 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344455555555555555555555555554432 244555555555555666666666666555542 224555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
.+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666655532 22334444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=75.50 Aligned_cols=121 Identities=9% Similarity=0.018 Sum_probs=88.6
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH-HHHcCCH--h
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA-LVKQNNA--D 243 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 243 (595)
...|++++|+..++...+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888877754 5677788888888888888888888888876653 3456677777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF 290 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (595)
+|...|++..+..+ .+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877654 45677778888888888888888888887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.1e-06 Score=66.35 Aligned_cols=104 Identities=15% Similarity=0.019 Sum_probs=85.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP--DDITVNSL 548 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 548 (595)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567778888888999999999999888763 3367788888888999999999999999998864 44 67888899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007640 549 ISCLLKG-GMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 549 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 576 (595)
..++.+. |++++|.+.++++.+..+.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999988776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-05 Score=73.99 Aligned_cols=140 Identities=9% Similarity=-0.016 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDG 481 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~ 481 (595)
.+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34455667778888888888888877653 443355666667788888888888887554322 111 2367777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
+...|++++|++.|++.......|. .........++.+.|+.++|...|+++.... |+......|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 8888888888888888875432243 3356667777888888888888888888753 444444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=73.12 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...+..+...+.+.|++++|+..|+.+.+.. |.+...|..+..+|...|++++|+..|+++.+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34455566666666677777777776666654 4556666666666666666666666666665543 234555666666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~ 256 (595)
+|.+.|++++|+..|++.++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-06 Score=70.87 Aligned_cols=99 Identities=14% Similarity=-0.014 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+...|++++|+..|++.+...+ .+...|..+..+|...|++++|...|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 444555566666666777777777776666543 356666666666667777777777776665432 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 007640 305 GLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~ 325 (595)
+|...|++++|.+.|+.....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777776666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-06 Score=72.16 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567888888899999999999999998877633 68889999999999999999999999988874 33678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.+|...|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-06 Score=70.25 Aligned_cols=96 Identities=13% Similarity=-0.087 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+.+.|++++|...|+.+...++ .+...|..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3444455555666666666666666655442 245555666666666666666666666665543 22444555556666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9.8e-06 Score=79.80 Aligned_cols=130 Identities=11% Similarity=-0.048 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
+...|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999988854 222 46666677777777777777777777665
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA-FEFFYDM 287 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 287 (595)
.. +.+..++..+..+|...|++++|+..|++.++..+ .+...+..+..++.+.|+.++| ..+|+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34566666677777777777777777777666543 3556666666666666666666 3344444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=65.49 Aligned_cols=96 Identities=8% Similarity=-0.045 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+.+.|++++|...+++..+... .+...|..+..++.+.|++++|...+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3445555555666666666666666555442 245555566666666666666666666655542 12345555555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00043 Score=66.92 Aligned_cols=185 Identities=8% Similarity=-0.043 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 007640 384 VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG--QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR-LNDARRFL 460 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 460 (595)
+++..+++.+.... +-+..+|+.-...+...+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 224444444444444444 2455555555555443 3344455444444444454 35555555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 007640 461 KQLKWNDLVPKPFMYNPVIDGFCKA--------------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK------ 520 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~------ 520 (595)
+.+.+.++. |...|+.....+.+. +.++++++.+.+..... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 555554432 444554444444433 23556666666665542 22455555444444333
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCC
Q 007640 521 -----GRMVEAISIFNKMLRIGCAPDDITVNSLIS---CLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 521 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+.++++++.++++++.. +-+.-.+.+++. +....|..++...+++++++-++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34566666666666642 222222222221 11235566666667777666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=64.96 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444455555555555555555555554432 234455555555555555555555555555442 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-05 Score=61.39 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44445555555555555555555555432 1244455555555555555555555555555432 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 55555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.4e-06 Score=67.18 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPD----KVTFTI 512 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~~~~~ 512 (595)
++..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444455555555555555555555444322 344455555555555555555555555443210 011 123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+..++...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555544443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=66.38 Aligned_cols=99 Identities=6% Similarity=-0.128 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666777777777777777777777654 4566677777777777777777777777766543 3356666667777
Q ss_pred HHHcCCHhHHHHHHHHHHHcC
Q 007640 236 LVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~ 256 (595)
+...|++++|...|++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-05 Score=65.08 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.+...+..+...+...|++++|...++....... .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3455555666666666666666666666555442 245556666666666666666666666655542 22455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.++...|++++|+..|+++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=65.98 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35556677788888888888888888763 2367778888888888888888888888888764 456777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
+.|++++|+..++++++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-05 Score=64.23 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPD----DITVNS 547 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 547 (595)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666666666666666666542 2245556666666666666666666666665421 1111 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 548 LISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
++.++...|++++|++.++++++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-05 Score=65.80 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=70.6
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
.|+++.... +.+...+..+...+.+.|++++|+..|++.+...+ .+...|..+..+|...|++++|...|++.....
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444432 22344555666677777777777777777776654 466677777777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
+.+...+..+..++...|++++|.+.|+.....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334556666777777777777777777776553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-05 Score=69.50 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+|..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566667777777777777777777777653 2356677777777777777777777777777653 44566666777777
Q ss_pred HhcCCHHHHH-HHHHHHHh
Q 007640 553 LKGGMPNEAF-RIMQRASE 570 (595)
Q Consensus 553 ~~~g~~~~A~-~~~~~~~~ 570 (595)
...|+.+++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666665 34444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=68.99 Aligned_cols=133 Identities=16% Similarity=0.005 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLV-PK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KV 508 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ 508 (595)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555556666665555554432100 01 23566667777777777777777777654210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRI----GCA-PDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
.+..+...+...|++++|...+++.++. +.. .....+..+...+...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777888888888888877652 111 11345677888888888999998888887754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00088 Score=64.75 Aligned_cols=248 Identities=10% Similarity=0.018 Sum_probs=118.1
Q ss_pred hcCCHH-HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 273 RIGEVK-KAFEFFYDMGSFGCSPD-IVTYNTLISGLCRVNE----------VARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 273 ~~g~~~-~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
+.|.++ +|+.+++.+... .|+ ...|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 445443 677777777643 333 2334433222222222 345555555555433 234444554444
Q ss_pred HHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 341 GYCKLG--KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN-MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 341 ~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
.+.+.| .+++++.+++.+.+.. +-|...|+.-.-++...|. ++++...+..+++.. +-|...|+.....+...+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 444444 2555555555555543 3344555544444444454 355555555555432 2244444444433333210
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----------C
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-----------G 486 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g 486 (595)
...+- ..+ . ...+.++++.+.+.......+. |..+|+.+-..+.+. +
T Consensus 195 ~~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 195 QPDSG-------PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp CC--------------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred ccccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHH
Confidence 00000 000 0 0002355555666555554432 455555444444333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 487 NVDEANVIVAEMEEKRCKPDKVTFTILIIG-----HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 487 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.++++++.++++.+. .||. .|..+..+ ....|..+++..++.++++.+ +....-|..+...+
T Consensus 253 ~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 253 VLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 577888888888876 3443 23322221 123677888888898888754 33344455544433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.8e-05 Score=62.04 Aligned_cols=98 Identities=8% Similarity=-0.147 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.+.. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34445555555555555555555555554442 334445555555555555555555555555444322 3445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~ 500 (595)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-05 Score=70.60 Aligned_cols=123 Identities=9% Similarity=-0.133 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS----------------PMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
...+..+...+...|++++|+..|++..+.. +.+. .++..+..++.+.|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3467777888889999999999999888743 1121 4555556666666666666666666554
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF 281 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (595)
.. +.+..++..+..++...|++++|+..|++..+..+ .+...+..+..++...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 42 33455555566666666666666666666555443 24445555555555554444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-05 Score=64.08 Aligned_cols=98 Identities=16% Similarity=0.034 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT 511 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 511 (595)
+...+..+...+...|++++|...+++..+.. |+ ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44555556666666666666666666665443 33 4455555666666666666666666655542 22445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.+..++...|++++|...|++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5556666666666666666666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=64.40 Aligned_cols=98 Identities=10% Similarity=-0.115 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--CHHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--STFMYNSLLN 234 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~ 234 (595)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345555556666666666666666655543 3344555555555555555555555555554432 22 3445555555
Q ss_pred HHHHc-CCHhHHHHHHHHHHHcC
Q 007640 235 ALVKQ-NNADEAVYMFKEYFRLY 256 (595)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~~ 256 (595)
.+.+. |++++|.+.+++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 55555 55555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=74.77 Aligned_cols=197 Identities=10% Similarity=0.015 Sum_probs=101.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 007640 339 ISGYCKLGKMDKATGIYNEMNSCGIKPSA----------------VTFNVLIDGFGKVGNMVSAEYMRERMLSFG-YLPD 401 (595)
Q Consensus 339 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 401 (595)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|...+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567778888888888888775322111 125556667777777777777666654321 0111
Q ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC-
Q 007640 402 VV----TFSSLIDGYCRNGQLNQGLKLCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWN--DLV- 469 (595)
Q Consensus 402 ~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~- 469 (595)
.. +.+.+-..+...|+.++|..++...... +..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222222333455666666666654321 1111 2344555666666666666666666655432 111
Q ss_pred --CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 470 --PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK--RC-KP-D--KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 470 --p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11335555666666666666666666554422 01 11 1 12344444445556666666666555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-05 Score=65.63 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
...+..+...+.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|+..|++..+.. +.+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44455555566666666666666666555443 245555566666666666666666666555432 2235555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007640 306 LCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~ 325 (595)
|...|++++|.+.|++....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00012 Score=61.63 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN----VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYN 476 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 476 (595)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 3444555555555555555555555555443 223 34444555555555555555555555544332 1344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-05 Score=63.44 Aligned_cols=92 Identities=10% Similarity=0.019 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKP---FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---KVTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li~~ 516 (595)
+...+...|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 444555666666666666666554322 22 35555566666666666666666666554211 2 3445555566
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007640 517 HCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~ 536 (595)
+...|++++|...|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=63.97 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCC--ccC----HHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV--TMS----TFMY 229 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 229 (595)
...|..+...+...|++++|+..|+...+.. +.+...+..+...+...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777777777777777776654 44566666677777777777777777766654321 111 5556
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
..+...+...|++++|...|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666666664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4e-05 Score=62.90 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPD----KVTFTI 512 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~~~~~ 512 (595)
.+..+...+...|++++|...+++...... .+...+..+...+...|++++|...++++.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444555555556666666666665554432 2455555666666666666666666666554321 111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 551 (595)
+...+...|++++|...|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6666666677777777776666642 454444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.2e-05 Score=75.39 Aligned_cols=196 Identities=8% Similarity=-0.005 Sum_probs=105.3
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc-cC
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPN----------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT-MS 225 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 225 (595)
.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...-.. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999887431111 123566777777777777777777766432100 11
Q ss_pred H----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC--
Q 007640 226 T----FMYNSLLNALVKQNNADEAVYMFKEYFRL----YSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSF--GC-- 292 (595)
Q Consensus 226 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 292 (595)
. .+.+.+...+...|+.+.|..++++.... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333333456677777666665432 1111 1345556666666667777776666665421 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007640 293 SP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKS---EFSPD--VVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 293 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
.+ ...++..++..|...|++++|...+++..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 13345555666666666666666665543211 01111 123344444445555666655555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=63.74 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
+..+...+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445566667777777777777776654 4566666666677777777777777777666543 3355566666666667
Q ss_pred cCCHhHHHHHHHHHHHc
Q 007640 239 QNNADEAVYMFKEYFRL 255 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~ 255 (595)
.|++++|+..|++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=65.55 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 450 ENRLNDARRFLKQLKWND--LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
.|++++|+..+++..+.+ -+.+...+..+...|...|++++|...+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777653 12235567777777777777777777777777653 224666677777777777777777
Q ss_pred HHHHHHHHC
Q 007640 528 SIFNKMLRI 536 (595)
Q Consensus 528 ~~~~~m~~~ 536 (595)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=81.54 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=65.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666554322 45566666666666666666666666666653 22455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007640 527 ISIFNKMLRIGCAPDDITVNSLISC--LLKGGMPNEAFRIMQ 566 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 566 (595)
++.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 2223334444444 566666666666665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00014 Score=61.68 Aligned_cols=101 Identities=18% Similarity=-0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKP------D-----KVTFTILIIGHCMKGRMVEAISIFNKMLRI-----GC 538 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 538 (595)
+......+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555556666666666666665542110 2 237888888888888999988888888875 11
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 539 AP-DDITV----NSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 539 ~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
.| +...| .....++...|++++|+..|+++++-.+.+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34 44567 888899999999999999999988765433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00025 Score=74.73 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR----------LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
..++|++.++++.... +-+..+|+.--.++...|+ ++++.+.++.+.+.+++ +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467788888887764 4456667766666666666 88899999998887755 7788888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 007640 487 --NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG-RMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG-------- 555 (595)
Q Consensus 487 --~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------- 555 (595)
+++++++.++++.+...+ +...|+.-...+.+.| .++++++.++++++.. +-+...|......+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999887544 7888888888888888 8899999999988865 56778888877777663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCccccc
Q 007640 556 ------GMPNEAFRIMQRASEDQNLQLPSWKKA 582 (595)
Q Consensus 556 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 582 (595)
+.+++++++++++++..+.+...|...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 567899999999999888888888754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.7e-05 Score=64.09 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CC---------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWN--------DL---------VPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
...+......+.+.|++++|...|.+.... .. +.+..+|..+..+|.+.|++++|...+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888888899998888887654 10 1123567777888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 500 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
+.. +.+...|..+..+|...|++++|...|++.++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 763 3356777888888888888888888888887753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=80.67 Aligned_cols=138 Identities=9% Similarity=-0.016 Sum_probs=89.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWN---DLVP----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RC-KPD-KVTFTI 512 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~~~~~ 512 (595)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665432 1111 2456788888888888888888888776532 21 222 346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccccccc
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLR-----IGC--APDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVP 584 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~-----~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 584 (595)
|...|...|++++|+.++++.++ .|- +....+...+..++...|++++|..++.++.+......+.|....+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~~~~~ 477 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEP 477 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCc
Confidence 88888889999999888888775 231 1123445667778888889999999999998876666666655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=9e-05 Score=63.24 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----H
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-PD----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPD----I 296 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~ 296 (595)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+..- ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666666666666665443211 11 12455555566666666666666655442100 001 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 297 VTYNTLISGLCRVNEVARGHELLKEVKFKSE----FSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
..+..+...+...|++++|.+.+++...... .......+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2344444555555555555555554432100 00012234444445555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=74.69 Aligned_cols=124 Identities=10% Similarity=-0.061 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN---------------VYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
....|..+...+.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|...++++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34567777888888888888888888877642 112 34555555555555555555555555554
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 466 NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 466 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
.... +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.++.++|.
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 44555555555555555555555555555442 112334444444555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00051 Score=56.21 Aligned_cols=93 Identities=15% Similarity=0.022 Sum_probs=43.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISC 551 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~ 551 (595)
+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...|+++++.. +.+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344444555555555555555443111 11 244444445555555555555555554432 112 3444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 007640 552 LLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.+.|++++|.+.++++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 555555555555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=72.31 Aligned_cols=140 Identities=9% Similarity=-0.055 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
...+..+...+.+.|++++|+..|++.++.- +.. ......+++. ... +.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHH
Confidence 3456667777777788888887777765420 000 0000111110 011 1235577788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
|.+.|++++|.+.+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888763 2356778888888888888888888888888754 44666777777777777777766
Q ss_pred HH
Q 007640 562 FR 563 (595)
Q Consensus 562 ~~ 563 (595)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0001 Score=75.82 Aligned_cols=122 Identities=7% Similarity=-0.128 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4467777778888888888888888877642 112 234444444444444444444444444433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 221 EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA 280 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (595)
. +.+...|..+..+|...|++++|+..|++.++..+ .+...+..+..++.+.++.+++
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444444332 2333444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00014 Score=72.38 Aligned_cols=120 Identities=8% Similarity=-0.068 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDG---------------HLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE 221 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 221 (595)
..|..+...+.+.|++++|+..|++..+.- .+.+..+|..+..+|.+.|++++|+..++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457788889999999999999999887620 01223344444444444455555555444444432
Q ss_pred CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 222 VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
+.+..++..+..+|...|++++|+..|++..+..+ .+...+..+...+...++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 22344444444444444455555444444444332 13333444444443333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.9e-05 Score=79.36 Aligned_cols=121 Identities=7% Similarity=-0.108 Sum_probs=93.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|+..+++..+.. +.+..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4455667899999999999988865 5678889999999999999999999999988764 4567888889999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQG--LSRIGEVKKAFEFFY 285 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 285 (595)
+++|++.|++..+..+ .+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999888754 244455555555 788888999988887
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00058 Score=57.13 Aligned_cols=110 Identities=11% Similarity=-0.115 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAI 527 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 527 (595)
++++|.++|++..+.+. ++. . |...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 44555555555555541 122 2 4444444445555666666555543 44555555555555 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 007640 528 SIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 572 (595)
.+|++..+.| +...+..|...|.. .+++++|.++++++.+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 34555555555555 556666666666665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.8e-05 Score=61.66 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=41.0
Q ss_pred cCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 204 AGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF 281 (595)
Q Consensus 204 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (595)
.|++++|+..|++..+.+ -+.+..++..+...|...|++++|+..|++.++..+ .+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 122344455555555555555555555555555443 23445555555555555555555
Q ss_pred HHHHHHh
Q 007640 282 EFFYDMG 288 (595)
Q Consensus 282 ~~~~~m~ 288 (595)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=63.33 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSD-------GH----------LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (595)
...+......+.+.|++++|+..|....+. +. +.+...|..+..+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777888899999999999999988764 10 1122344445555555555555555555554
Q ss_pred CCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 219 PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+.+ +.+...|..+..+|...|++++|...|++.++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 432 234444555555555555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.7e-05 Score=73.80 Aligned_cols=153 Identities=9% Similarity=-0.018 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456777777888889999999999887765 233321 122233333332221 1378888899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC-LLKGGMPNE 560 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~ 560 (595)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +-+...+..|... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988763 3367888999999999999999999999987643 2344555555555 345567788
Q ss_pred HHHHHHHHHhcCCCC
Q 007640 561 AFRIMQRASEDQNLQ 575 (595)
Q Consensus 561 A~~~~~~~~~~~~~~ 575 (595)
+.+.++++.+..+..
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888898888766543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=69.16 Aligned_cols=172 Identities=6% Similarity=-0.084 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--
Q 007640 384 VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ----------LNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN-- 451 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g-- 451 (595)
++|...++.+++.. +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45566666665543 1234445544444444444 777777777777664 456677777776777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---------- 520 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---------- 520 (595)
+++++.+.++++.+.+.. +..+|+.-...+.+.| .++++++.++++++.... |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 668888888888777654 6777777777777777 788888888888776433 667777766666552
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 521 ----GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 521 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
+.++++++++++++... +-|...|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56899999999999865 6678888888888888877554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0019 Score=54.74 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVP------K-----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RCKP 505 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p 505 (595)
.....+.+.|++++|...|++..+..+.. + ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 34444455555555555555554433220 1 226777777777777777777777777664 1134
Q ss_pred C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 506 D-KVTF----TILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 506 ~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+ ...| .....++...|++++|+..|++.++
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 4566 7778888888888888888888876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0018 Score=54.07 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEA 491 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 491 (595)
+++++|+..|++..+.| .++.. |...|...+.+++|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 22222 4455555556666666666666654 45566666666666 5677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
.++|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776664 55666666666666 677777777777777665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=5.8e-05 Score=60.11 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=64.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD-------DI 543 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 543 (595)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45567777788888888888888888887763 3367778888888888888888888888888743 33 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007640 544 TVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.+..+..++...|+.++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5555556666555555544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=73.25 Aligned_cols=124 Identities=12% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHHcCCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-C-CHhhHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGK---NLSP----NVYTFTILINALCKENRLNDARRFLKQLKWN-----DLV-P-KPFMYNP 477 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~-p-~~~~~~~ 477 (595)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.... |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665432 1111 2356777777888888888888877776432 211 2 2456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEK-----RCK-PD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876532 321 22 23445666777788888999988888876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=70.78 Aligned_cols=148 Identities=12% Similarity=0.017 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|++..+.. |+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4467788888999999999999999988753 33321 122333344333221 1367788888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-IVTYNTLISG-LCRVNEVA 313 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~-~~~~g~~~ 313 (595)
|.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888764 47788888999999999999999999988754 343 3444444444 23345677
Q ss_pred HHHHHHHHHHhc
Q 007640 314 RGHELLKEVKFK 325 (595)
Q Consensus 314 ~A~~~~~~~~~~ 325 (595)
.+.+.|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=52.58 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+|...+++..+... .+...+..+...|...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777776653 367788888888888888888988888888763 2356778888888888888888888888887
Q ss_pred HC
Q 007640 535 RI 536 (595)
Q Consensus 535 ~~ 536 (595)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0015 Score=49.36 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 551 (595)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766553 2255666667777777777777777777776643 3445556666555
Q ss_pred HHhc
Q 007640 552 LLKG 555 (595)
Q Consensus 552 ~~~~ 555 (595)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00066 Score=54.44 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 007640 174 SVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF 253 (595)
Q Consensus 174 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (595)
+|+..|+...+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555543 4455555555556666666666666666555433 2344555556666666666666666665554
Q ss_pred H
Q 007640 254 R 254 (595)
Q Consensus 254 ~ 254 (595)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=58.43 Aligned_cols=93 Identities=15% Similarity=0.010 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC------HHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS------TFM 228 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 228 (595)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 34566667777777777777777777776654 44666666677777777777777777777665431 12 344
Q ss_pred HHHHHHHHHHcCCHhHHHHHH
Q 007640 229 YNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~ 249 (595)
+..+..++...|+.+.|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555554444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=50.86 Aligned_cols=64 Identities=19% Similarity=0.111 Sum_probs=51.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++..+..+...|...|++++|.+.|++..+... .+...|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788888888888888888888888887642 2566788888888888888888888888775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=48.77 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (595)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2334444444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00094 Score=56.49 Aligned_cols=85 Identities=8% Similarity=-0.108 Sum_probs=42.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV----------DEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
+.+.+++|.+.++...+..+. ++..|..+..++...+++ ++|+..|++.++.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 444556666666666555432 555565555555555443 3555555555544211 3444555555554
Q ss_pred hcC-----------CHHHHHHHHHHHHH
Q 007640 519 MKG-----------RMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (595)
..| ++++|++.|+++++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 432 45555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00093 Score=56.53 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCD----------AAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+.+++++|++.++...+.. +.+...|..+..++...++++ +|+..|++.++.+ +....+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34455667777777766655 556666666666666665543 5555555554433 22344455555555
Q ss_pred HHcC-----------CHhHHHHHHHHHHH
Q 007640 237 VKQN-----------NADEAVYMFKEYFR 254 (595)
Q Consensus 237 ~~~g-----------~~~~A~~~~~~m~~ 254 (595)
...| ++++|+..|++.++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 4442 45555555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0028 Score=49.34 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 434 SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+-+...+..+...|...|++++|...|++..+.++. +...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346677777888888888888888888888776533 5667788888888888888888888877643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.002 Score=65.08 Aligned_cols=85 Identities=5% Similarity=-0.136 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 007640 451 NRLNDARRFLKQLKWN---DLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RC-KPD-KVTFTILIIG 516 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~~~~~li~~ 516 (595)
|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++.++. |. .|+ ..+|+.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5555555555554321 11111 234555555555555555555555554321 10 111 2234555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (595)
|...|++++|+.++++.++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0047 Score=62.46 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=53.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 007640 444 INALCKENRLNDARRFLKQLKWND---LVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----R-CKPD-KVT 509 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~-~~~ 509 (595)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.++.+|...|++++|..+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556667777777776665431 1111 345666666677777777777776665532 1 1121 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 510 FTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56666666667777777777766666
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0042 Score=47.88 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKV-TFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
...+.+.|++++|.+.++++.+.. +.+.. .+..+..++...|++++|+..|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445556677777777777766552 22445 66666666777777777777777776643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.13 Score=56.61 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
..++..+.+.|..++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 556666667777777766542111 1122345567777777665332 3556777777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....| -++.....|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776643 2234444444555555554444444333 1233333344455555554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.02 Score=55.62 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++....+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44555555444444555555555555555543 4555555555555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.097 Score=57.65 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNE 357 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~ 357 (595)
.|..+...+.+.|+++.|.+.|..
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.025 Score=43.12 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=34.7
Q ss_pred CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 471 KPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++..+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555543333 456666666655542 124445555555555566666666666665553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0095 Score=45.80 Aligned_cols=66 Identities=15% Similarity=0.003 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDI-TVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
....+...|++++|+..++++++.. +.+.. .+..+..+|...|++++|++.++++++..+.....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556788999999999999999864 55667 899999999999999999999999999887665544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.014 Score=58.79 Aligned_cols=86 Identities=7% Similarity=0.023 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHHhhC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCC-HhhHHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGK---NLSPN----VYTFTILINALCKENRLNDARRFLKQLKWN-----DL-VPK-PFMYNPVID 480 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~ 480 (595)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.... |. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666654331 11111 245566666666666666666666665321 21 111 334666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~ 500 (595)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.021 Score=57.71 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCC-H
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKN---LSPN----VYTFTILINALCKENRLNDARRFLKQLKWN-----DL-VPK-P 472 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~ 472 (595)
..+..+...|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.+++++... |. .|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455666778888888887775431 1222 346777777788888888888888776432 21 111 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577778888888888888887777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.22 Score=48.35 Aligned_cols=132 Identities=9% Similarity=-0.042 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHH--HcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C-Ch----HHHHHHHHhccC-
Q 007640 154 HSFKTYNLVMRSLC--EMG---LHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRA---G-KC----DAAKGLLSQFRP- 219 (595)
Q Consensus 154 ~~~~~y~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g-~~----~~A~~~~~~~~~- 219 (595)
.+...|...+++.. ..+ ...+|+.+|++..+.. |-....+..+.-+|... + .. ......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 45667777766543 333 3468999999999875 44556666555555410 0 00 000001111000
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
...+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0113344444444444444455555555555554443 344444444444445555555555554444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.41 Score=38.54 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+....+..+..+..+|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++-++|
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344455556666666666666666666444 235666666666666666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.06 Score=44.90 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A 526 (595)
....+.+-|.+....+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+..+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35566666776666664 57778888888888877 5668888888888763 23 344556666777888888888
Q ss_pred HHHHHHHHHC
Q 007640 527 ISIFNKMLRI 536 (595)
Q Consensus 527 ~~~~~~m~~~ 536 (595)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.094 Score=40.80 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=49.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR------CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++.-+..+...+.+.|+++.|...++...+.- -.+....+..+..++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678888888888888888888876531 1234667788888888888888888888888874
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=1.1 Score=36.19 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 387 (595)
-.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-. -.|. ...|++....
T Consensus 19 ldG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 356666666666666543 2444455555444444444444444444322 1111 1222222222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
.-+-.+- .+......-++.+...|+-|+-.+++.++... .+|++.....+..+|.+.|+..+|.+++.+..+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 2222111 23345555566667777777777777775443 36667777777777777777777777777777776
Q ss_pred CC
Q 007640 468 LV 469 (595)
Q Consensus 468 ~~ 469 (595)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.04 E-value=5.2 Score=43.88 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHHcCC
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN--ALCKENRLNDARRFLKQLKWNDLVPKPFMY--NPVIDGFCKAGN 487 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~ 487 (595)
++..|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+.+.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344556665566665554432 2222222222 3335566666666666665431 1211111 223344555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP-NEAFRIMQ 566 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 566 (595)
.....++++.+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 665555666666531 1122222222223333455444555554444322 23222222333333333332 34555555
Q ss_pred HHH
Q 007640 567 RAS 569 (595)
Q Consensus 567 ~~~ 569 (595)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=1.1 Score=38.25 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 3556777777777777777777777777654 233444555566665
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
.-.++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444333321 455555566667777777776543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.17 Score=38.39 Aligned_cols=64 Identities=8% Similarity=0.006 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCC---chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 155 SFKTYNLVMRSLCEMGL---HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444432222 345555555554443 33444444444444445555555555544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.31 Score=37.75 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWND------LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+..-+..|...+.+.++++.|...++...+.. -.+...++..|..++.+.|+++.|..+++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566678888888888888888888775531 1234667888888888888888888888888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=1.2 Score=38.09 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455555555555443 2455555555555556666555555554431 22333334444555444
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
.++-+....++ -++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333222 12333333334455555555553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.21 Score=41.67 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKEN---RLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
.+.+-|.+....+ +++..+...+..++++.+ +.++++.+++.+.+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444444444 355666666666666665 4556666666666544 12 234445555566677777777777
Q ss_pred HHHHHHC
Q 007640 495 VAEMEEK 501 (595)
Q Consensus 495 ~~~m~~~ 501 (595)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.2 Score=46.58 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 007640 453 LNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKA-----GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-KGRMVE 525 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 525 (595)
...|...+++..+.+.. .+...|..+...|.+. |+.++|.+.|++.++....-+..++..+...++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56777777777765522 1255778888888774 8888888888888876322236667777777777 488888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 526 AISIFNKMLRIGCA--PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 526 A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|.+.+++.+..... |+.... ..+.-++|..+++++..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhHH
Confidence 88888888876544 553322 22333566666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.34 E-value=4.3 Score=44.46 Aligned_cols=297 Identities=11% Similarity=0.016 Sum_probs=144.9
Q ss_pred HHHHHHHHHcCCHhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHH
Q 007640 230 NSLLNALVKQNNADEA-VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD--IVTYNTLISGL 306 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~ 306 (595)
.++.+++...|--.+. +.......... .+-...-...--+....|+.++++.+++.....+-..+ ...-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 3566777777733222 22222222221 11222233334467777888888777776654211112 22333344445
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-C-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 007640 307 CRVNEVARGHELLKEVKFKSE-F-----SPDVVTYTSVISGYCKLGK-MDKATGIYNEMNSCGIKPSAVTFN--VLIDGF 377 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~-~-----~p~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~ 377 (595)
...|..+++.+++........ . .+.+..-..+.-++.-.|. -+++.+.+..+....- +...... .|...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 556665667776666554321 0 0112223333334433332 2355566666554321 1111111 233334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHHcCC
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID--GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT---ILINALCKENR 452 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~---~ll~~~~~~g~ 452 (595)
...|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|.. -|. ++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCC
Confidence 56677777777777766542 3233333333 3346677777777777776542 1211 222 23345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007640 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM-VEAISIFN 531 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 531 (595)
.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-|....|.. .+|+.++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 777666777776542 2233333333334445666666666666655543 33333333344444444443 56666777
Q ss_pred HHHH
Q 007640 532 KMLR 535 (595)
Q Consensus 532 ~m~~ 535 (595)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.45 Score=38.08 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 007640 451 NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE---ANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~ 525 (595)
..+..+.+-+......|. ++..+-..+..++.+..+... ++.++++..+.+ .| .....-.+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334444444444443332 455555555555655554443 555666555542 12 22233344455566666666
Q ss_pred HHHHHHHHHH
Q 007640 526 AISIFNKMLR 535 (595)
Q Consensus 526 A~~~~~~m~~ 535 (595)
|.++++.+++
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.5 Score=43.99 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCH
Q 007640 418 LNQGLKLCDEMKGKNLSPN---VYTFTILINALCKE-----NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-GNV 488 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 488 (595)
...|...+++.++.. |+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 567777788877763 44 56888898889884 99999999999999877543577888889999885 899
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCK--PDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+++.+.+++.+..... |+....+.+ .-.+|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 9999999999987665 665444433 3455666665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.52 E-value=1.1 Score=37.01 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
++.++|.++|+.+++.+-.- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56777777777775542222 5555555555566777777777777777655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.39 Score=39.58 Aligned_cols=103 Identities=9% Similarity=0.036 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHhcCChHHHHHHHHhccCC
Q 007640 154 HSFKTYNLVMRSLCEMGLH------DSVQVVFDYMRSDGHLPNSP----MIEFFVSS---CIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~----~~~~li~~---~~~~g~~~~A~~~~~~~~~~ 220 (595)
.|..+|-..+..+-+.|+. ++.+++|++.... ++|+.. .|..+--- +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5778888888888888988 8888888887773 355421 11111111 12235566666666665433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 007640 221 EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ 258 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (595)
+-.. ..+|......=.+.|+++.|.+++.+.+..++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 555555555555666666666666666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.97 E-value=2.3e-05 Score=77.33 Aligned_cols=221 Identities=13% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+|..|..+..+.+++.+|++.|- + .-|+..|..++.+..+.|.+++-.+.+...++.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 366667777777776666665442 1 2244456666666666666666666665555432 2333344566666
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
++.++..+-.+++ ..||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 6666554432221 124444445555555555555555544443321 122233334444444443
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
+.-+ -..++.+|..+-.+|...+.+.-|.-.--.++- .++ -...++..|-..|-+++.+.+++.-...
T Consensus 191 daAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 3211 123445566666666666655544433322221 111 1122344455555555555555554422
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007640 397 GYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 397 g~~p~~~~~~~li~~~~~ 414 (595)
. ......|+-|.-.|++
T Consensus 259 E-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSK 275 (624)
T ss_dssp T-TCCHHHHHHHHHHHHS
T ss_pred C-chhHHHHHHHHHHHHh
Confidence 1 2344455555544444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.95 Score=36.22 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=54.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhccCCCCc-cCHHHHHHHHHHHHHcCCHhH
Q 007640 169 MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA---AKGLLSQFRPGEVT-MSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 169 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 244 (595)
......+.+-|......| .++..+--.+..++++.+.... ++.+++.+.+.+.+ ......-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555555545 3666666667777777766655 77777777665411 234444556667777777777
Q ss_pred HHHHHHHHHHcC
Q 007640 245 AVYMFKEYFRLY 256 (595)
Q Consensus 245 A~~~~~~m~~~~ 256 (595)
|.+.++.+++..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777777777754
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=14 Score=38.77 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=145.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT-WTFNILIQGLS 272 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~ 272 (595)
|.....+ .+.|+++.+..+...+...-+. .-..|..|...+ .....++....+++... .|-. ..-+..+..+.
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHH
Confidence 4444443 3568888877777766543221 111333222221 12234444444444211 1111 12234455666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+.+++...+.++.. .+.+...-.....+....|+..+|....+.+=..+...| ..+..++..+.+.|.....
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt~~- 155 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQDPL- 155 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSCHH-
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCCHH-
Confidence 77777766664432 133444444556667777887777666666544432222 3344444444444433221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
..+. -+......|+...|..+...+ .++. .....++..+.. ...+......
T Consensus 156 ---------------~~~~-R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---- 207 (618)
T 1qsa_A 156 ---------------AYLE-RIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---- 207 (618)
T ss_dssp ---------------HHHH-HHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH----
T ss_pred ---------------HHHH-HHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc----
Confidence 1111 223334445555554444332 1121 112222222221 1222221111
Q ss_pred CCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007640 432 NLSPNVYT---FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNP----VIDGFCKAGNVDEANVIVAEMEEKRCK 504 (595)
Q Consensus 432 ~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~ 504 (595)
..++... +...+.-+.+ .+.+.|...+........ .+...... +...+...+...++...+.......
T Consensus 208 -~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-- 282 (618)
T 1qsa_A 208 -TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (618)
T ss_dssp -SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred -cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--
Confidence 1222221 1112222223 366777777766654321 23222222 2222223332445555555544332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 505 PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 505 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.....-.+....+.|+++.|...|+.|.... .......--+..++.+.|+.++|..+|+++.+
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 233333333334446677777777777765421 11233333455566677777777777777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.98 E-value=2.1 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 455788888888888887753 5557788888888888888888888877763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.54 E-value=15 Score=36.74 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=29.9
Q ss_pred CCHhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 240 NNADEAVYMFKEYFRL-----YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
|+++.|++.+..+.+. +..........++..|...|+++...+.+.-+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5677777766555432 122344556667777777777777766665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.98 E-value=0.05 Score=54.17 Aligned_cols=396 Identities=12% Similarity=0.072 Sum_probs=217.9
Q ss_pred HHHHhhcCCCCchhHhhhhcCCCCchhHHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007640 99 VCTLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSV 175 (595)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 175 (595)
+.......+...+ +...+-+.-+|+...+|+... +..+.-.++...++... .++..=+.|+-+|++.++..+.
T Consensus 60 LgkAqL~~~~v~e-AIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 60 LAKAQLQKGMVKE-AIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp HHHHTTTSSSCTT-TTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHHHHHccCchHH-HHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHH
Confidence 3333334445454 555566666777766776655 55566666666665432 2334455688888888887776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC--------------------CccCHHHHHHHHHH
Q 007640 176 QVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE--------------------VTMSTFMYNSLLNA 235 (595)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~li~~ 235 (595)
.+++. .||..-...+..-|...|.++.|.-+|..+.... -..++.+|.-+-.+
T Consensus 136 Eefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 136 EEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp TSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 65543 4666666778888888888888877777664321 12456678888888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
|...+++..|.-.--.++- .+| -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- +.++.
T Consensus 209 Cvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHH
Confidence 8888888777655444432 222 23346667778888888888887766221 34566677777666654 34444
Q ss_pred HHHHHHHHhcCCCC------CCHhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHCCCCCCHHHHHH----
Q 007640 316 HELLKEVKFKSEFS------PDVVTYTSVISGYCKLGKMDKATGIY-------------NEMNSCGIKPSAVTFNV---- 372 (595)
Q Consensus 316 ~~~~~~~~~~~~~~------p~~~~~~~ll~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~~~~~---- 372 (595)
.+-++..-.+-+++ .....|.-++-.|++-.+++.|.... .+.... ..|...|-.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~F 359 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQF 359 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHH
Confidence 44433322111111 12345777777777777777654321 111110 123333433
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHHHHHH--------
Q 007640 373 -----------LIDGFGKVGNMVSAEYMRERMLSF----------GYLPDVVTFSSLIDGYCRNGQLNQGLK-------- 423 (595)
Q Consensus 373 -----------ll~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~A~~-------- 423 (595)
|+.++...=|...+.++|++.-.. .-.-+...-.++-+.|....+++.-..
T Consensus 360 YL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNF 439 (624)
T 3lvg_A 360 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNF 439 (624)
T ss_dssp HTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCS
T ss_pred HHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc
Confidence 333333333333334443322110 001134444556667777777665432
Q ss_pred ----HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 424 ----LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 424 ----l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
+-.++.++. -...-.+....|.+.++|+++.++.++ ...|--.|.....+|+.+-|.++++-..
T Consensus 440 D~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 440 DNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFL 507 (624)
T ss_dssp CTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHH
T ss_pred cHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223333321 223333344456677778877765432 1133334455556677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISI 529 (595)
Q Consensus 500 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 529 (595)
+.| +...|...+-.|...=++|.++++
T Consensus 508 ~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 508 QEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 654 445666666666655566665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.93 E-value=4.5 Score=43.38 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG---------RMVEAISIFNKML 534 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~ 534 (595)
-+..=|..|.....+.+++++|.+.|+..+.. +-+...+.-|+..|.+.+ +.+..+.+.-+++
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 34555777888778888888888888887754 467788888888887766 5666666555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.66 E-value=19 Score=41.12 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH
Q 007640 262 WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337 (595)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 337 (595)
.-|..++..+.+.+.++.+.++-....+..-+-+. ..|..+.+.+...|++++|...+-.+.... --......
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---~r~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---LKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS---SCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH---HHHHHHHH
Confidence 34555666666666666665555544432111111 134555566666666666666665554322 12234444
Q ss_pred HHHHHHhc------------CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007640 338 VISGYCKL------------GKMDKATGIYNEMNSCG--IKPSAVTFNVLIDGFGKVGNMVSA-EYMRERMLS 395 (595)
Q Consensus 338 ll~~~~~~------------g~~~~A~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~m~~ 395 (595)
|+..+|.. |..++..+++....+.. +.....-|..|=.-+...|++..| .-+|+.+.+
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 33455555554432211 111112334343334556666554 455666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.63 E-value=24 Score=35.24 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 310 NEVARGHELLKEVKFKS----EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
|+++.|++.+..+.+.. ...........++..|.+.|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56666666665554321 122233445566666667777766666555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.13 E-value=6.4 Score=31.62 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=39.5
Q ss_pred CCCCHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 468 LVPKPFMYNPVIDGFCKAGNV---DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..|++.+--.+..++.+..+. .+++.+++++.+.+..-....+-.+..|+.+.|++++|.++.+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555655666666666543 35666666666543111234445555666777777777777776665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=2.7 Score=41.39 Aligned_cols=128 Identities=8% Similarity=-0.004 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHH---HHcCCchHHHHHHHHHHHC--CCC-CCHHHHHHHHHHHHhcCChHHH-HHHHHhccCCCCccCH
Q 007640 154 HSFKTYNLVMRSL---CEMGLHDSVQVVFDYMRSD--GHL-PNSPMIEFFVSSCIRAGKCDAA-KGLLSQFRPGEVTMST 226 (595)
Q Consensus 154 ~~~~~y~~li~~~---~~~g~~~~A~~~~~~m~~~--~~~-~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~ 226 (595)
.|...|..++... ...|+.+.|...++++... |-. ++... ..+-.. ..-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH-------H
Confidence 3555565555443 2457888888888887762 311 11100 111111 11111111 1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-----SFGCSPDIVTYN 300 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~ 300 (595)
.+...++..+...|+.++|+..+..+....+ -+...|..+|.++.+.|+..+|++.|+... +.|+.|...+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 2345567788889999999999988887765 578899999999999999999999988764 358888776544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=8.8 Score=37.71 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDITVNSL 548 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 548 (595)
+...++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34456666777788888887777776552 33666778888888888888888888877654 5788877765443
Q ss_pred H
Q 007640 549 I 549 (595)
Q Consensus 549 ~ 549 (595)
-
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.95 E-value=13 Score=30.31 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=46.5
Q ss_pred CCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 469 VPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+..++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5667777777777777765 3467778887776532223344455667788888888888888888774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.03 E-value=27 Score=33.20 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 468 LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS 547 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 547 (595)
..-|+.....+...|.+.+++.+|...|- .|-.+....|..++.-+...+...+ +|...-.+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH
Confidence 34578888899999999999999988772 2334444666555554444333222 22222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007640 548 LISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++ -|.-.++...|..+++...+
T Consensus 194 VL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-HHHHhCCHHHHHHHHHHHHH
Confidence 33 45567899999887776664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.96 E-value=8.1 Score=29.26 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+..+-++.+...++.|++.+..+.+++|.+..++.-|.++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.74 E-value=30 Score=39.44 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
...++..+...+..+-+.++..... -+....-.+..++...|++++|.+.|.+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3346666777787777776654432 244444456677888888888888887753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.46 E-value=4.3 Score=34.09 Aligned_cols=116 Identities=8% Similarity=-0.052 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC-------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 007640 442 ILINALCKENRLNDARRFLKQLKWND-LVPK-------PFMYNPVIDGFCKAGNVDEANVIVAEMEEKR--CKPDKVTFT 511 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~ 511 (595)
.-+..+...|.++.|+-+...+.... ..|+ ..++..+.+++...|++..|...|++.+... +.-+..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33555666777777777666643321 1122 1245666677777777777777777754321 110111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+. ....... ......+...--.+..||.+.|++++|+.+++.+..
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 110 0000000 011223344545678899999999999999877543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.35 E-value=14 Score=27.87 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|..|.. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666654432 2222222234456667777776665443 3566666666544 3556666666666
Q ss_pred HHHHHCC
Q 007640 356 NEMNSCG 362 (595)
Q Consensus 356 ~~m~~~g 362 (595)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.22 E-value=15 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 434 SPNVYTFTILINALCKENR---LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.|+..+-..+..++.+... ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555555555555555544 3355666666655442222344555556666667777777776666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.86 E-value=13 Score=27.94 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|..|.. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666655432 2222222334456677777777665443 3577777766654 3666667776666
Q ss_pred HHHHHCC
Q 007640 356 NEMNSCG 362 (595)
Q Consensus 356 ~~m~~~g 362 (595)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.39 E-value=39 Score=31.77 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=51.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---GRMVEAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
.++.....+...|.+.|++.+|...|- .|-.-|...+..++.-+... |...++--++-+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 478888999999999999999887664 22111355565555544443 544443322222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 547 SLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
+++ .|.-.|+...|..+++...+.
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222 355678888888888876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 595 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 4e-06
Identities = 47/346 (13%), Positives = 105/346 (30%), Gaps = 22/346 (6%)
Query: 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288
L + + D + + + L + S +G V K +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--------LAEAYSNLGNVYKERGQLQEAI 87
Query: 289 SFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348
+ + + + + ++ V+ V S L K
Sbjct: 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147
Query: 349 DKATGIYNEMNSCGIKP---SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV-T 404
I+ AV ++ L F G + A + E+ ++ P+ +
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDA 205
Query: 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464
+ +L + ++ + + + L ++ ++ A ++
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 465 WNDLVPK-PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM 523
+L P P Y + + + G+V EA + C + L +G +
Sbjct: 265 --ELQPHFPDAYCNLANALKEKGSVAEA-EDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 524 VEAISIFNKMLRIGCAPDDITV-NSLISCLLKGGMPNEAFRIMQRA 568
EA+ ++ K L + P+ ++L S L + G EA + A
Sbjct: 322 EEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 595 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.27 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.85 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.62 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.56 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.04 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.38 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.1 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-21 Score=193.38 Aligned_cols=384 Identities=12% Similarity=0.059 Sum_probs=313.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+...+.+.|++++|++.|+++.+.. |-+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4567788999999999999998865 5678889999999999999999999999988764 4567889999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKE 321 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 321 (595)
+++|+..+....+..+ .+...+..........+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 9999999999988765 455566666666666666666666666555433 33445555566667778888888888887
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007640 322 VKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD 401 (595)
Q Consensus 322 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (595)
..... +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+++..... +.+
T Consensus 161 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred hhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 77654 3456778888889999999999999999988754 3456778888999999999999999999988764 346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 7788888899999999999999999988764 5567888999999999999999999999888765 3477888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+.+.|++++|.+.+++..+.. +-+..++..+...|...|++++|+..|+++++.. +-+..++..|+.+|.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999998763 2357788889999999999999999999998753 4457789999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-20 Score=187.69 Aligned_cols=372 Identities=13% Similarity=0.052 Sum_probs=309.2
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|+..|++.++..+ .+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 4566778999999999999998754 45788899999999999999999999999998765 478899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+++|...+....+.. +.+..............+....+........... .................+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHH
Confidence 999999999998654 3344555555555556666666666655554443 3445556666777788889999998888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 007640 357 EMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN 436 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 436 (595)
...... +-+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+++..... +.+
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 887654 4456778888899999999999999999988753 3367788999999999999999999999988765 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
...+..+...+.+.|++++|...++++.+..+ .++.++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 78888899999999999999999999988764 367889999999999999999999999988763 5578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
+...|++++|+..|++.++.. +-+..++..++.+|.+.|++++|++.++++++..+.....|
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999998754 45678899999999999999999999999998876554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=8.4e-13 Score=127.82 Aligned_cols=249 Identities=10% Similarity=-0.003 Sum_probs=146.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
....+.+.|++++|...|+++.... +.+..+|..+..++...|++++|...|++..+.. +-+...+..+...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4455666677777777777766543 2345566666667777777777777777666543 234555666666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 382 NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
++++|...++...... |+............ ...+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 7777766666665532 21100000000000 00000011111222334455666666666
Q ss_pred HHHhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007640 462 QLKWNDL-VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP 540 (595)
Q Consensus 462 ~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (595)
+...... ..++.++..+...+...|++++|...+++..... +-+...|..+...+...|++++|++.|+++++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 6654432 2345667777777777778888877777776653 2256677777777777888888888887777653 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 541 DDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
+..++..++.+|.+.|++++|++.|+++++..+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 566677777778888888888888877776544433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.7e-12 Score=124.16 Aligned_cols=243 Identities=11% Similarity=0.003 Sum_probs=131.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
....+.+.|++++|+..|+.+.+.. |-+..+|..+..++...|++++|...++++.+.. +.+...+..++..|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4555666777777777777766654 4456666666666666666666666666665543 2345566666666666666
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTF-NILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLK 320 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 320 (595)
+++|.+.+++.....+ +.... ....... . ..+.......+..+...+.+.+|.+.+.
T Consensus 103 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 103 QRQACEILRDWLRYTP--AYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHHHHHHHHHHHHTST--TTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhcc--chHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 6666666666655332 11100 0000000 0 0000000111122233344555666666
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007640 321 EVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP 400 (595)
Q Consensus 321 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 400 (595)
+.....+-..+...+..+...+...|++++|+..|++..... +-+...|..+..+|...|++++|...+++.++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 555433223345556666666666666666666666665542 2345556666666666666666666666665532 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+..+|..+..+|.+.|++++|+..|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445566666666666666666666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2e-08 Score=96.95 Aligned_cols=229 Identities=11% Similarity=0.064 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH
Q 007640 335 YTSVISGYCKLGKMDKATGIYNEMNS----CGIKPS---AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GYLPDVV 403 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~----~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ 403 (595)
+..+...+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+...... +......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 33344445555555555555554432 111111 123334445555666666666666555432 1112233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---Hhh
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGK--NLSPN----VYTFTILINALCKENRLNDARRFLKQLKWNDLVPK---PFM 474 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~ 474 (595)
.+..+...+...++...+...+.+.... ..... ...+..+...+...|++++|...++.........+ ...
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4445555566666666666665544321 11111 22344455566677777777777776654432222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEE----KRCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCA----PD 541 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~----p~ 541 (595)
+..+...+...|++++|...++++.. .+..|+ ...+..+...|...|++++|.+.+++.++. |.. ..
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 45566777777888888777777653 233332 345666777777888888888888776552 221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 007640 542 DITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~ 563 (595)
...+..++..+...++.+++.+
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH
Confidence 2345556666777777776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.2e-08 Score=98.59 Aligned_cols=269 Identities=9% Similarity=-0.005 Sum_probs=187.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 007640 303 ISGLCRVNEVARGHELLKEVKFKSEFSPD---VVTYTSVISGYCKLGKMDKATGIYNEMNSCGI-KPS----AVTFNVLI 374 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~ll 374 (595)
...+...|++++|++++++.....+-.++ ...+..+...+...|++++|...|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44456677777777777776553311111 23566667777888888888888887754210 011 23456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCCHHHHHHH
Q 007640 375 DGFGKVGNMVSAEYMRERMLS----FGYLP---DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK----NLSPNVYTFTIL 443 (595)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~----~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~l 443 (595)
..+...|++..+...+..... .+... ....+..+...+...|+++.+...+...... +.......+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 788899999999988887653 21111 1235566778899999999999999887653 223345566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 007640 444 INALCKENRLNDARRFLKQLKWN----DLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP---DKVTFTILI 514 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li 514 (595)
...+...++...+...+...... +..+ ....+..+...+...|++++|...+++..+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 77788899999999888776442 1111 12346667778889999999999999877653222 244566788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 515 IGHCMKGRMVEAISIFNKMLR----IGCAPD-DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
..+...|++++|...+++++. .+..|+ ..++..+..+|.+.|++++|.+.++++++-
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998875 243343 356788899999999999999999998753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.4e-09 Score=100.56 Aligned_cols=216 Identities=7% Similarity=0.002 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-NMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
..|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++..++.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 344555555666666677777777766643 334445566666665554 3677777776666543 2355666666666
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC----
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN---- 487 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 487 (595)
+.+.|++++|+..++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 777777777777777776653 445667777777777777777777777777666533 55566666655555544
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 007640 488 --VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGC-APDDITVNSLISCLLK 554 (595)
Q Consensus 488 --~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~ 554 (595)
+++|.+.+.++++.. +.+...|..+...+ .....+++.+.++...+... ..+...+..++..|..
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 466777777766653 22555555555443 33345666666666665322 2234455566665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.6e-08 Score=96.46 Aligned_cols=216 Identities=6% Similarity=-0.025 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-CDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
...|+.+..++.+.+.+++|+++++.+++.. |-+...|+....++...|+ +++|+..++.+.+.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4577788888999999999999999999976 7788889999999888764 899999999998765 457889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--- 311 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 311 (595)
.+.+.|++++|+..++++++..+ .+...|..+...+...|++++|++.++++.+.. +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 99999999999999999999875 588999999999999999999999999998754 3367778777776666554
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 007640 312 ---VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIK-PSAVTFNVLIDGFG 378 (595)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ll~~~~ 378 (595)
+++|++.+....... +.+...|+.+...+. ....+++.+.++...+.... .+...+..++..|.
T Consensus 199 ~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888877654 345667776665544 44467777777777653222 23444555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=2.4e-08 Score=95.09 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 382 NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLK 461 (595)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 461 (595)
..++|..++++..+...+.+...|...+..+...|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887544556677888888888899999999999998876433345578888888888999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 007640 462 QLKWNDLVPKPFMYNPVIDGF-CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CA 539 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 539 (595)
.+.+.... +...|....... ...|+.+.|..+|+.+.+. .+.+...|...+..+...|+++.|..+|++.++.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98876643 444554444433 3457899999999999876 34467888999999999999999999999988843 33
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 540 PD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 540 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
|+ ...|...+..-...|+.+.+.++.+++.+..+..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 33 4578888888888899999999999998877644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=3.1e-08 Score=94.26 Aligned_cols=150 Identities=8% Similarity=0.026 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 208 DAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
++|..+|++..+...+.+...+..++..+.+.|+++.|..+|+++++..+......|...+..+.+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555554433333444455555555555555555555555554333222334555555555555555555555555
Q ss_pred hhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 288 GSFGCSPDIVTYNTLISG-LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 288 ~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+.+ +.+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++...
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4332 1122222222211 122344444444444444331 22334444444444444444444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.4e-08 Score=93.87 Aligned_cols=151 Identities=10% Similarity=-0.054 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSP--DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYM 389 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 389 (595)
.+.++.-++++.......+ ...+|..+...|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555556554332222 12345556666677777777777777766643 33456666666666777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 390 RERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 390 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
|+++.+.. +-+..++..+..+|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 76666643 2234556666666666666666666666665543 33444443344444444444444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=5.3e-09 Score=101.04 Aligned_cols=153 Identities=8% Similarity=-0.020 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCChHHHHHHHHhccCCCCccCHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR----------AGKCDAAKGLLSQFRPGEVTMSTFM 228 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~ 228 (595)
+..++......+..++|+++++.+.+.. |-+...|+..-..+.. .|.+++|+..++.+.+.+ +.+...
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 3334444444444578888888888754 4444455443332222 222444555555444332 234444
Q ss_pred HHHHHHHHHHcC--CHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 229 YNSLLNALVKQN--NADEAVYMFKEYFRLYSQPDTWTFN-ILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 229 ~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
+..+..++...+ ++++|...++++.+..+ ++...+. .....+...+..++|+..++.+.+.. +-+...|+.+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 444444444433 24455555555544432 2333332 22233444455555555555444332 1234444444444
Q ss_pred HHhcCCHHHH
Q 007640 306 LCRVNEVARG 315 (595)
Q Consensus 306 ~~~~g~~~~A 315 (595)
+.+.|++++|
T Consensus 188 ~~~~~~~~~A 197 (334)
T d1dcea1 188 LPQLHPQPDS 197 (334)
T ss_dssp HHHHSCCCCS
T ss_pred HHHhcCHHHH
Confidence 4444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=2.2e-08 Score=92.45 Aligned_cols=90 Identities=18% Similarity=-0.042 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
+...|.+.|++++|+..|++..+.. +.++.+|+.+..++.+.|++++|+..|++.++..+ .+..++..+..+|...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhh
Confidence 3334444444444444444443322 22333444444444444444444444444444332 123334444444444444
Q ss_pred HHHHHHHHHHHh
Q 007640 277 VKKAFEFFYDMG 288 (595)
Q Consensus 277 ~~~A~~~~~~m~ 288 (595)
+++|...|+...
T Consensus 121 ~~~A~~~~~~al 132 (259)
T d1xnfa_ 121 DKLAQDDLLAFY 132 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=8.2e-09 Score=99.66 Aligned_cols=85 Identities=5% Similarity=-0.074 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
.+..+++...+....... +++...+..+...+...++.++|...+.+....++ .+..++..+...+...|++++|.+.
T Consensus 221 l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~ 298 (334)
T d1dcea1 221 TDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQY 298 (334)
T ss_dssp HCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred hcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444443332 22333333444444445555555555555444331 1334455555555555555555555
Q ss_pred HHHHHHC
Q 007640 495 VAEMEEK 501 (595)
Q Consensus 495 ~~~m~~~ 501 (595)
+++..+.
T Consensus 299 ~~~ai~l 305 (334)
T d1dcea1 299 FSTLKAV 305 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=0.00018 Score=65.58 Aligned_cols=222 Identities=8% Similarity=-0.050 Sum_probs=114.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
.+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 33444444445555555555555555543 33333334444433 335555555555555443 222333333
Q ss_pred HHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 410 DGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 410 ~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
..+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 33222 3445555555555555441 2222222222222 233455555555544432 34455555555
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 482 FCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 482 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
|.. ..+...+..+++...+.| +......+...|.. ..++++|+.+|++..+.| ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 554 345566666666666653 45555555545544 457777888887777765 4556666766666
Q ss_pred h----cCCHHHHHHHHHHHHhcCC
Q 007640 554 K----GGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~----~g~~~~A~~~~~~~~~~~~ 573 (595)
+ ..+.++|.++|+++.+.+.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCCccCHHHHHHHHHHHHHCcC
Confidence 4 3367778888887776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=1.4e-06 Score=81.71 Aligned_cols=165 Identities=10% Similarity=-0.071 Sum_probs=83.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLY----SQ-PDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF----GC-SPDIVTYNT 301 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ 301 (595)
....|...|++++|.+.|.+..+.. .. .-..+|..+..+|.+.|++++|...+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3556667777777777777765431 11 11345666677777777777777776655421 10 001223334
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhc---CCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHH
Q 007640 302 LISGLCR-VNEVARGHELLKEVKFK---SEFSP-DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSA------VTF 370 (595)
Q Consensus 302 li~~~~~-~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~ 370 (595)
+...|.. .|++++|++.+++.... .+.++ -..++..+...+...|++++|...|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 4444433 46666666666554321 10011 1234555566666666666666666666553211110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 371 NVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
...+..+...|+++.|...+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22333444556666666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.8e-06 Score=71.89 Aligned_cols=124 Identities=9% Similarity=-0.115 Sum_probs=91.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
...+...|++++|++.|.++ .+|+..+|..+..+|...|++++|.+.|++.++.+.. ++..|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44556778888888877754 2456777777888888888888888888888776643 577788888888888888
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 489 DEANVIVAEMEEKRC--------------KPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~--------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
++|.+.|++..+... .++ ..++..+..++.+.|++++|.+.+++.++..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888887764310 011 2456667778889999999999999888754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=5.5e-06 Score=77.44 Aligned_cols=168 Identities=9% Similarity=-0.098 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHhccCC----C-CccCH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSD----GHL-PNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG----E-VTMST 226 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 226 (595)
..|......|...|++++|.+.|.++.+. +-+ .-..+|..+..+|.+.|++++|...+++..+. + .....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 35777788888888888888888887652 111 12346677777777777777777777765432 1 11113
Q ss_pred HHHHHHHHHHHH-cCCHhHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----
Q 007640 227 FMYNSLLNALVK-QNNADEAVYMFKEYFRLY----SQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI---- 296 (595)
Q Consensus 227 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 296 (595)
.++..+...|.. .|++++|+..|++..+.. ..+ -..++..+...+...|++++|...|++..........
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 344455555543 467777777666654321 000 1234555666666666666666666665543211110
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 297 --VTYNTLISGLCRVNEVARGHELLKEVKF 324 (595)
Q Consensus 297 --~t~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (595)
..+...+..+...|+++.|...+++...
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1122233344455666666666666544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.00031 Score=63.86 Aligned_cols=112 Identities=14% Similarity=-0.022 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCH
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNV 488 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~ 488 (595)
....+...+......+ +...+..|...+.. ..+...+..+++...+.+ ++.....+...|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 3444455555444432 34445555555543 344555666666555544 34444455555544 4577
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
++|..+|.+..+.| +...+..|...|.. ..+.++|.++|++..+.|
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 77888887777765 45555566666654 336777888888777766
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.9e-06 Score=67.14 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=50.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 558 (595)
...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++++.+ +.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 344455555555555555555442 2244555555555555555555555555555543 44555555555555555555
Q ss_pred HHHHHHHHHHHhcCC
Q 007640 559 NEAFRIMQRASEDQN 573 (595)
Q Consensus 559 ~~A~~~~~~~~~~~~ 573 (595)
++|+..++++++..+
T Consensus 88 ~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=8.2e-06 Score=70.87 Aligned_cols=122 Identities=12% Similarity=-0.069 Sum_probs=66.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+...|+++.|++.|+.+ .+|++.++..+..++...|++++|+..|++.++.+ +.....|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 34455666666666666543 14555566666666666666666666666665544 33455666666666666666
Q ss_pred hHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007640 243 DEAVYMFKEYFRLYSQP---------------DTWTFNILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
++|+..|++.+...... ...++..+..++.+.|++++|.+.|....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666654321100 012333444455555555555555555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=1.7e-06 Score=75.87 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
|+...+......|.+.|++++|+..|.+..+..+ .++..|..+..+|.+.|++++|+..|++.++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 6677777788888888888888888888877764 367788888888888888888888888888653 22567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.+|...|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888776
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.1e-05 Score=63.69 Aligned_cols=92 Identities=13% Similarity=0.063 Sum_probs=63.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR 522 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 522 (595)
-...+.+.|++++|+..|++..+..+. ++..|..+..+|.+.|++++|+..+.+..+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 345566677777777777777665533 56667777777777777777777777777654 3366667777777777777
Q ss_pred HHHHHHHHHHHHHC
Q 007640 523 MVEAISIFNKMLRI 536 (595)
Q Consensus 523 ~~~A~~~~~~m~~~ 536 (595)
+++|+..|++.++.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.2e-05 Score=67.43 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG 521 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 521 (595)
.....|.+.|++++|...|+++.+.++. +...|..+..+|...|++++|...|+++++.. +-+...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 3455677888888888888888877643 67788888888888888888888888888764 336678888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHH
Q 007640 522 RMVEAISIFNKMLRIGCAPDDITVNSLISCL--LKGGMPNEAFRI 564 (595)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~ 564 (595)
++++|...+++.+... +-+...+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888888888764 34455554444332 333445555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=6.1e-06 Score=72.18 Aligned_cols=100 Identities=9% Similarity=-0.086 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
|+...+......|.+.|++++|+..|+++.+.. |.++..|..+..+|.+.|++++|+..|+++.+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 666777777778888888888888888777765 6677777777788888888888888888877654 34566777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHHc
Q 007640 234 NALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
.+|.+.|++++|+..|++..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 7888888888888777776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.8e-05 Score=66.33 Aligned_cols=92 Identities=10% Similarity=-0.004 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 311 (595)
..+.|.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|...|++..+.. +-+...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 34555666666666666666666554 356666666666666666666666666665432 2244566666666666666
Q ss_pred HHHHHHHHHHHHhc
Q 007640 312 VARGHELLKEVKFK 325 (595)
Q Consensus 312 ~~~A~~~~~~~~~~ 325 (595)
+++|.+.+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=8.5e-06 Score=63.75 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
-.+...+.+.|++++|...|++.++... -+...|..+..++.+.|++++|+..+++.++.. +.+...+..++.+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 3456677788888888888888887642 267788888888888888888888888888864 55678888888888888
Q ss_pred CCHHHHHHHHHHHH
Q 007640 556 GMPNEAFRIMQRAS 569 (595)
Q Consensus 556 g~~~~A~~~~~~~~ 569 (595)
|++++|++.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888888764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0028 Score=59.09 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
--..+.+.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.. +..+|..+...+.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 33445566667777777777776433 35566677777777777777765442 4556666777776
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 310 (595)
+......| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 66655443 2222223345555566777777777777777777766532 2445666777777777654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=8.8e-06 Score=64.61 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPD-KVTFTILIIGH 517 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~ 517 (595)
.+++.+...+++++|++.|+.....++ .++.++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 455566666667777777776666553 256666666666665433 3456666666665432222 12455666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 007640 518 CMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~ 536 (595)
.+.|++++|++.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6677777777777766664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.5e-05 Score=61.02 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHhccCCCCccC-HHHHHHHHHH
Q 007640 160 NLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC---DAAKGLLSQFRPGEVTMS-TFMYNSLLNA 235 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~-~~~~~~li~~ 235 (595)
..+++.+...+++++|.+.|+...+.+ +.+..++..+..++.+.++. ++|+.+++++...+..++ ..++..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888888888888888888876 67788888888888765544 468888888877554333 3466778888
Q ss_pred HHHcCCHhHHHHHHHHHHHcC
Q 007640 236 LVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~ 256 (595)
|.+.|++++|++.|+++++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 888888888888888888864
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=1.8e-05 Score=61.85 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=47.5
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA 242 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (595)
...+.+.|++++|+..|++..+.. |-+..+|..+..++.+.|++++|+..|++..+.. +.+..++..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 444555566666666666555543 3345555555555555555555555555554433 23445555555555555555
Q ss_pred hHHHHHHHHH
Q 007640 243 DEAVYMFKEY 252 (595)
Q Consensus 243 ~~A~~~~~~m 252 (595)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00021 Score=60.21 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
+|+.+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|+..|+++++.. +-+......+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 56777888888899999999998888764 2377888888888889999999999999888864 335666655555554
Q ss_pred hcCCHH
Q 007640 554 KGGMPN 559 (595)
Q Consensus 554 ~~g~~~ 559 (595)
+.+...
T Consensus 142 ~~~~~~ 147 (170)
T d1p5qa1 142 RIRRQL 147 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00013 Score=61.66 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
.+|+.+..+|.+.|++++|+..+++.++.. +.+..++..++.+|...|++++|+..|+++++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n 129 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 357778889999999999999999999975 5688999999999999999999999999999987643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00011 Score=58.76 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHH
Q 007640 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-PD-----KVTFTIL 513 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-----~~~~~~l 513 (595)
+..+...+.+.|++++|+..|.+.++.++. +..+|..+..+|.+.|++++|.+.++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344566667777777777777777666532 5666777777777777777777777776643110 01 1345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 007640 514 IIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
...+...+++++|+..|++.+..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666667777777777666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00031 Score=57.92 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+|..+..+|.+.|++++|+..++++++.. +.+..+|..++.++...|++++|+..|+++++..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555555543 34455555555555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00037 Score=55.43 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C-----HhhHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP-K-----PFMYNPV 478 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~-----~~~~~~l 478 (595)
+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|...++++++.+... . ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455666777777777777777777664 4567777777777777777777777777765532110 1 2356666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
...+...+++++|.+.|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 67777777888888888776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00043 Score=58.10 Aligned_cols=82 Identities=13% Similarity=-0.065 Sum_probs=62.5
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 551 (595)
...|..+..++.+.|++++|+..+.++++.. +.+...|..+..++...|++++|+..|+++++.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4467777888888899999999999888764 3367788888888999999999999999888864 4456666666555
Q ss_pred HHhc
Q 007640 552 LLKG 555 (595)
Q Consensus 552 ~~~~ 555 (595)
..+.
T Consensus 155 ~~~l 158 (169)
T d1ihga1 155 KQKI 158 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.026 Score=52.28 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL 267 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 267 (595)
.||..-...+...|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 35555566677788888889889888887654 456777788888888888877654 366788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 007640 268 IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG 346 (595)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 346 (595)
...+.+.....-| .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhC
Confidence 8888877766443 22233344566666778888888888888888888765432 456667788888888754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.0013 Score=55.03 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++.. +.+..+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 56677888889999999999999988764 4477888888899999999999999999998864 456666666665555
Q ss_pred hcCCHH-HHHHHHHHHHh
Q 007640 554 KGGMPN-EAFRIMQRASE 570 (595)
Q Consensus 554 ~~g~~~-~A~~~~~~~~~ 570 (595)
+.+... ...+.+.+|.+
T Consensus 144 ~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 555443 34455555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.60 E-value=0.0017 Score=53.17 Aligned_cols=120 Identities=11% Similarity=-0.005 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNL----SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVI 479 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 479 (595)
.+..-...+.+.|++.+|+..|.+.+..-. .++..... .... ....+|..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN-------IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh-------HHHHHHhhHH
Confidence 445556667777777777777777664310 01111000 0000 0123677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
.+|.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|+..|++.++.. +-+..+...+.
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~ 142 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYE 142 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88999999999999999988774 3477889999999999999999999999988864 33444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=3.2e-05 Score=78.03 Aligned_cols=226 Identities=8% Similarity=-0.067 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHH
Q 007640 279 KAFEFFYDMGSFGCSPD-IVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 279 ~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+|.+.|++..+. +|+ ...+..+...+...+++++| ++++.... |+. ..++..-. +- ...+..+.+.++
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~-Lw-~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDKKVEQD-LW-NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHHTHHHH-HH-HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC---hhhHHHHhHHHH-HH-HHHHHHHHHHHH
Confidence 677888888753 444 34556667777777778776 55554322 321 11111111 11 112456677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 007640 357 EMNSCGIKPSAVTFNVLIDGF--GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS 434 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 434 (595)
...+..-.++..-....+..+ ...+.++.+...+....+.. .++...+..+...+.+.|+.++|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 776654334433322222222 22344455554444433321 2345667777888888899988888777665432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
...++..+...+...|++++|...+++..+..+. +...|+.|...+...|+..+|...|.+..... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 2356777888899999999999999998877633 67889999999999999999999999988764 56778888887
Q ss_pred HHHHhc
Q 007640 515 IGHCMK 520 (595)
Q Consensus 515 ~~~~~~ 520 (595)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.53 E-value=0.00056 Score=57.40 Aligned_cols=128 Identities=9% Similarity=-0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+......+...|++++|+..|.++.+.. ............. .. -+.....+..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KL-QPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHH
Confidence 34556677889999999999998876410 0000001111000 00 0223445666777777
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 307 (595)
+.|++++|+..+++.++..+ .+..+|..+..+|...|++++|++.|++..+.. +.+......+.....
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77777777777777777654 466777777777777777777777777776542 224444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.46 E-value=0.0028 Score=52.76 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSD---GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
..+.-....+.+.|++.+|+..|+..... ....+... ..... .....+|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASE-------SFLLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcc-------hhHHHHHHhHH
Confidence 35666777888899999999988876651 11111110 00000 00133566677
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
.+|.+.|++++|+..+++.++..+ .+..+|..+..++...|++++|...|.+..+.. +.+......+-.....
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 778888888888888888887764 577788888888888888888888888887642 2234444444333333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.0012 Score=55.87 Aligned_cols=125 Identities=6% Similarity=-0.034 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
.......+...|++++|.+.|......- +.... ......+.+...-..+.. .....+..+...+.+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444467888999999999999988742 11000 000000111111111111 123567778999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-----SFGCSPDIVT 298 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 298 (595)
.|++++|+..++++++..+ -+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999999998876 588999999999999999999999999873 3588887665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00011 Score=66.63 Aligned_cols=130 Identities=9% Similarity=-0.050 Sum_probs=84.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 007640 448 CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD-KVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 448 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 526 (595)
.+.|++++|+..+++.++..+. +...+..++..|+..|++++|.+.++...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 3568888888888888887744 7888888888888889999998888888876 343 34444444444333333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007640 527 ISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
..-.......+-+++...+......+.+.|+.++|.+.++++.+..+.....|.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 222111111121222344445566778889999999999999887765544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00011 Score=73.86 Aligned_cols=228 Identities=11% Similarity=-0.100 Sum_probs=124.1
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 209 AAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT-WTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
+|.+.|++..+.. +.....+..+..++...|++++| |++++... |+. ..++..- .+. ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLW-NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHH-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHH-HHHHHHHHHHHHHh
Confidence 6778888876542 22244566677788888888766 66766532 221 1121111 111 11244566667766
Q ss_pred hhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007640 288 GSFGCSPDIVTYNTLISG--LCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKP 365 (595)
Q Consensus 288 ~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p 365 (595)
.+..-.++..-....... ....+.++.++..+....... +++...+..+...+.+.|+.++|...++......
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH---
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 654433443322222222 223445555555554433221 3445667778888888899999988887766522
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|+..|.+..... +|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 23567778888899999999999999988763 3355789999999999999999999999988775 677888888887
Q ss_pred HHHHcC
Q 007640 446 ALCKEN 451 (595)
Q Consensus 446 ~~~~~g 451 (595)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.0026 Score=52.21 Aligned_cols=98 Identities=22% Similarity=0.095 Sum_probs=64.5
Q ss_pred hHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 007640 474 MYNPV--IDGFCKAGNVDEANVIVAEMEEKRC-KP----------DKVTFTILIIGHCMKGRMVEAISIFNKMLRI---- 536 (595)
Q Consensus 474 ~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~-~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 536 (595)
+|..+ ...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|...+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 3445566777777777777664210 11 1356777888888888888888888877652
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 537 -GCAPD-----DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 537 -g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...++ ...+..++.+|...|++++|++.|+++++-
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222 224667788888999999999999887764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.0024 Score=53.82 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CC-CCH------------------hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 441 TILINALCKENRLNDARRFLKQLKWND--LV-PKP------------------FMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~-p~~------------------~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
..........|++++|.+.|......- .. ++. ..+..+...+.+.|++++|...++++.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al 94 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 94 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 334456788999999999999988652 11 110 234555556666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 007640 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDIT 544 (595)
Q Consensus 500 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 544 (595)
+.. +-+...|..++.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 95 ~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 95 FEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 542 22555666666666666666666666666533 466666544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.0002 Score=64.97 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=28.2
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 168 EMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 168 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
+.|++++|+..+++.++.. |.|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555555555555544 445555555555555555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.19 E-value=0.00054 Score=55.80 Aligned_cols=71 Identities=6% Similarity=-0.064 Sum_probs=41.8
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK----------CDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
|-+.+.+++|+..|+...+.. |.++.++..+..++...++ +++|+..|+++.+.+ +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345566788888888887766 6677777777777765433 344555555554433 2344444444444
Q ss_pred HHH
Q 007640 236 LVK 238 (595)
Q Consensus 236 ~~~ 238 (595)
|..
T Consensus 85 y~~ 87 (145)
T d1zu2a1 85 YTS 87 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.09 E-value=0.0015 Score=53.06 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALC 448 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 448 (595)
+.+++|...|+...+.. |.+..++..+..+|.
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHH
Confidence 34445555555544443 334444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.012 Score=48.11 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=59.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-C----------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLV-P----------KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RCKPD--- 506 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~--- 506 (595)
.+...|++++|+..|++..+.... | ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665542111 1 1346777778888888888888777776642 11222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 507 --KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 507 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...+..+..+|...|++++|+..|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567778889999999999999998876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0093 Score=43.96 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
..+-.+...+.+.|++++|...|++..+. ...++ ..++..+..++.+.|++++|+..++++++.. |-+..++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 33445666667777777777777666542 11112 3456666777777777777777777776643 23334444
Q ss_pred HH
Q 007640 547 SL 548 (595)
Q Consensus 547 ~l 548 (595)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.42 E-value=0.055 Score=42.43 Aligned_cols=81 Identities=12% Similarity=-0.074 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----GGM 557 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~ 557 (595)
.+.++|.+++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45666666666666554 34444444444443 345667777777776655 34444555555554 346
Q ss_pred HHHHHHHHHHHHhcC
Q 007640 558 PNEAFRIMQRASEDQ 572 (595)
Q Consensus 558 ~~~A~~~~~~~~~~~ 572 (595)
.++|.++++++.+.+
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 777777777766654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.02 Score=42.00 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWND-----LVPK-PFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
..+..+...+.+.|++++|...|++..+.. ..++ ..+++.+..++.+.|++++|++.++++++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334456666667777777777776654321 1111 345666777777777777777777776665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.88 E-value=0.23 Score=37.43 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=72.0
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
-.|.+++..+++.+..... +..-|+.++--....-+-+...+.++.+-+. .|. ..++++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence 3455666666665555432 3444555544444444545444444443221 110 12233333222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 494 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
-+-.+ ..+...++..+..+..+|+-+.-.++++.+.+.+ .+++.....+..+|.+.|...++-+++.++-++|
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 22211 1133445556666667777777777777666644 6667777777777777777777777777776655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.78 E-value=0.17 Score=39.40 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHHCC
Q 007640 347 KMDKATGIYNEMNSCG 362 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g 362 (595)
++++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.16 E-value=0.43 Score=35.88 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
.....++.+.+.|+-+.-.++++++.+.+ .+++...-.+..+|.+.|...++..++.+.-+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555555566555555655554433 45555555555666666666666666655555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.57 Score=35.45 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=30.2
Q ss_pred CHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...+--....++.+.. +.++++.++++..+.+ +.+. ..+-.|..+|.+.|++++|.++++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444444444444443 2345555555555432 1121 3334444555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.79 E-value=5.5 Score=37.64 Aligned_cols=371 Identities=9% Similarity=-0.019 Sum_probs=183.6
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCC
Q 007640 143 LEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV 222 (595)
Q Consensus 143 ~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 222 (595)
..|....++.+.....-..-+..+.+.+++++.+..+. ..+.+...-.....+....|+.++|...+..+-..|.
T Consensus 59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 33444443333233333344566777777766554332 2245566666777777778888777777766544332
Q ss_pred ccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007640 223 TMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTL 302 (595)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 302 (595)
..+..+.. +|..+.+.|. .+...+-.-+......|+...|..+...+.. .........
T Consensus 134 -~~p~~c~~----------------l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~ 191 (450)
T d1qsaa1 134 -SQPNACDK----------------LFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAI 191 (450)
T ss_dssp -CCCTHHHH----------------HHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHH
T ss_pred -CCchHHHH----------------HHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHH
Confidence 12222333 3333333322 3333333444455555666666665543321 111222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHH
Q 007640 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK--LGKMDKATGIYNEMNSCGIKPSAVTFNV----LIDG 376 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~----ll~~ 376 (595)
+........+. ... ... ..+......+..++.+ ..+.+.|..++....... ..+..-+.. +...
T Consensus 192 ~~l~~~p~~~~---~~~---~~~---~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~ 261 (450)
T d1qsaa1 192 ISLANNPNTVL---TFA---RTT---GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWR 261 (450)
T ss_dssp HHHHHCGGGHH---HHH---HHS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT
T ss_pred HHHHhChHhHH---HHH---hcC---CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHH
Confidence 33222211111 111 111 1222222222233222 246667777776665432 122222222 2222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDA 456 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (595)
....+..+.+...+......+ .+.......+......++...+...++.|.... .....-..-+..++...|+.++|
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A 338 (450)
T d1qsaa1 262 LMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEA 338 (450)
T ss_dssp SCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhH
Confidence 233455666666666665543 344444445555566777888877777765432 22344445567777788888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHH
Q 007640 457 RRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN-VDEANVIVAEMEEKRCKPD-KVT---FTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~ 531 (595)
...|..+... ++ -|..|... +.|. +.-.. ......+. ... -..-+..+...|+..+|...|.
T Consensus 339 ~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~------~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~ 405 (450)
T d1qsaa1 339 KEILHQLMQQ---RG--FYPMVAAQ--RIGEEYELKI------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWA 405 (450)
T ss_dssp HHHHHHHHTS---CS--HHHHHHHH--HTTCCCCCCC------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcC---CC--hHHHHHHH--HcCCCCCCCc------CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHH
Confidence 8888777632 22 23322211 1111 00000 00000000 000 1123455667889999988888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 532 KMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 532 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.+... .+......+.....+.|.++.|+....++.
T Consensus 406 ~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 406 NLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 77653 355566677788888899999888776663
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=6.5 Score=37.07 Aligned_cols=190 Identities=12% Similarity=0.023 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 366 SAVTFNVLIDGFGK--VGNMVSAEYMRERMLSFGYLPDVVTFSSLI----DGYCRNGQLNQGLKLCDEMKGKNLSPNVYT 439 (595)
Q Consensus 366 ~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 439 (595)
+......+..++.+ ..+.+.+..++........ .+...+..+- ..+...+..+.+...+......+ .+...
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 287 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHH
Confidence 33333333334333 2577888888877765322 2222222222 22234566778888877776653 34444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 440 FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519 (595)
Q Consensus 440 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 519 (595)
....+......+++..+...+..|.... .....-.--+..++...|+.++|..+|...... ++ -|..|... +
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~ 359 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--R 359 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--H
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--H
Confidence 4455555667789999998888775322 223444456678888999999999999988643 33 33333221 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 520 KGRMVEAISIFNKMLRIGCAPDDI----TVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
.|..-. +-.. .....++.. .-..-+..+...|+..+|...|..+.+.
T Consensus 360 Lg~~~~---~~~~--~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~ 410 (450)
T d1qsaa1 360 IGEEYE---LKID--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (450)
T ss_dssp TTCCCC---CCCC--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCC---CCcC--CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC
Confidence 221000 0000 000000100 0112355677889999999999888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.04 E-value=3.1 Score=31.17 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 435 PNVYTFTILINALCKENR---LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+...+-.....++.+... .++++.+++++.+.+..-....+-.|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 444454455555555433 4566667766665432111234555666667777777777777777665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.38 E-value=3.9 Score=28.91 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
++.+-+..+...++.|++.+..+.+++|.+..++.-|.++|+-.+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.10 E-value=5.2 Score=28.28 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.=++.+-+..+....+.|++....+.+.+|.+.+++..|.++|+-...
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665543
|