Citrus Sinensis ID: 007644

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFFEQESGSRAAPQPQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPETSLKRSDKKLQLVEPERNLERGGTITVTEGVESKKGQFDFPKKKVIQRTSKLEHKGGDR
ccccccccccccccccccEEEEccccccEEEEEEccEEEEEEccccccccHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHcccccccccHHHHHHHccHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
ccHHcccccccHHEccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEcHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHcccccccccHHHcccccccccHHHHccHHHHHHHcccHHHHHHcccccccccccEcccccccccHHHHHHcccccccccccc
mkfmklgtkpdtfyteeatrtvisdapsdlviQVNNIRYllhkfpllpkcgllqrlcsdpedsdsvtielhdipggedAFELCAKFCYGItinlsahnfvpAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTpiskvswsytytrpgytqkrhqiapkdwwtediSELDIELFRCIVTAVrstymlppqlIGEALHVYACrwlpditktktrstesssgsqtqtdaisvgknRRILETIVSmipsdrgsvSVGFLLRLLSTAIylggvspvtkTELRRRASIQFeeatvgdlllpshspsdnhhqyiYDIDLVMTVLESYLVLWRrqspgttpaesnnQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETlpaiargkhdDLYKFINIYLkehpelskTERKRLCRIldcqklspevrahavknerlplRTVVQLLFFeqesgsraapqpqelvsrrkqtpftehdISKLKLDLgslervkgtrkttipetslkrsdkklqlvepernlerggtitvtegveskkgqfdfpkkkVIQRTSKlehkggdr
mkfmklgtkpdtfyteeatrtvisdapsdlVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTnklsewsenlgIIRRCIDSIVEKIltpiskvswsytytrpgytqkrhqiapkdWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKtktrstesssgsqtqtdaisvgknrrILETIVsmipsdrgsVSVGFLLRLLSTAiylggvspvtkTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPgttpaesnnqfLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLkehpelsktERKRLCRILDCQKlspevrahavknerlplRTVVQLLFFEQesgsraapqpqelvsrrkqtpftehdisklkldlgslervkgtrkttipetslkrsdkklqlvepernlerggtitvtegveskkgqfdfpkkkviqrtsklehkggdr
MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDItktktrstesssgsqtqtDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFFEQESGSRAAPQPQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPETSLKRSDKKLQLVEPERNLERGGTITVTEGVESKKGQFDFPKKKVIQRTSKLEHKGGDR
************FYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP***DSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDIT************************NRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRR***I**********************QYIYDIDLVMTVLESYLVLWRR************QFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFF***************************************************************************************************************
*KF***GTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQ****************HDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPIS***********************DWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKT*******************KNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHS****HHQYIYDIDLVMTVLESYLV*************************VAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHP****TERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLF****************************************************************************************************************
MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITK******************ISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFFEQE*****************QTPFTEHDISKLKLDLGSLERVKGTRKTTIPETSLKRSDKKLQLVEPERNLERGGTITVTEGVESKKGQFDFPKKKVIQ************
*******T*PDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYT************IAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDI**********************VGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRR**************LMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFFEQESGSRAA*******************************************************************************QFDFP******************
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MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQLLFFEQESGSRAAPQPQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPETSLKRSDKKLQLVEPERNLERGGTITVTEGVESKKGQFDFPKKKVIQRTSKLEHKGGDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query595 2.2.26 [Sep-21-2011]
Q9FIK1559 BTB/POZ domain-containing yes no 0.912 0.971 0.622 0.0
Q9C9V6631 BTB/POZ domain-containing no no 0.811 0.765 0.469 1e-128
O80970634 BTB/POZ domain-containing no no 0.783 0.735 0.405 1e-108
Q9LIM6588 BTB/POZ domain-containing no no 0.776 0.785 0.415 1e-104
Q0WL52580 BTB/POZ domain-containing no no 0.828 0.85 0.379 1e-104
Q9FN09579 BTB/POZ domain-containing no no 0.796 0.818 0.407 1e-103
Q8H1D3571 BTB/POZ domain-containing no no 0.786 0.819 0.386 1e-99
O64814481 BTB/POZ domain-containing no no 0.736 0.910 0.397 1e-99
Q5KS50762 Coleoptile phototropism p no no 0.796 0.622 0.347 1e-86
Q9S9Q9665 BTB/POZ domain-containing no no 0.806 0.721 0.361 1e-81
>sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 Back     alignment and function desciption
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/561 (62%), Positives = 436/561 (77%), Gaps = 18/561 (3%)

Query: 1   MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP 60
           MKFMK+GTKPDTFYT+EA+R +I+D P+DLVI++NN  Y LH+  L+PKCGLL+RLC+D 
Sbjct: 1   MKFMKIGTKPDTFYTQEASRILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTDL 60

Query: 61  EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNF 120
           E+SD+VTIEL+DIPGG DAFELCAKFCY ITINLSAHN V A CA+KFLRM++SV+KGN 
Sbjct: 61  EESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHNLVNALCASKFLRMSDSVDKGNL 120

Query: 121 ILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWS 180
           + KLE+FFHSCIL+GWKDSIVTL++T KL EW ENLGI+R+CIDSIVEKILTP S+VSWS
Sbjct: 121 LPKLEAFFHSCILQGWKDSIVTLQSTTKLPEWCENLGIVRKCIDSIVEKILTPTSEVSWS 180

Query: 181 YTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYAC 240
           +TYTRPGY +++H   P+DWWTEDIS+LD++LFRC++TA RST+ LPPQLIGEALHVY C
Sbjct: 181 HTYTRPGYAKRQHHSVPRDWWTEDISDLDLDLFRCVITAARSTFTLPPQLIGEALHVYTC 240

Query: 241 RWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLS 300
           RWLP         + S SG   + +  ++ ++RR++ T+V+MIP+D+GSVS GFLLRL+S
Sbjct: 241 RWLPYF------KSNSHSGFSVKENEAALERHRRLVNTVVNMIPADKGSVSEGFLLRLVS 294

Query: 301 TAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESY 360
            A Y+   S  TKTEL R++S+Q EEAT+ DLLLPSHS S   H + YD DLV TVLES+
Sbjct: 295 IASYVRA-SLTTKTELIRKSSLQLEEATLEDLLLPSHSSS---HLHRYDTDLVATVLESF 350

Query: 361 LVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAI 420
           L+LWRRQS  +    SNN  L+ SIRKVAK+IDSYLQ VA+D++MPV K VSL+E +P I
Sbjct: 351 LMLWRRQS--SAHLSSNNTQLLHSIRKVAKLIDSYLQAVAQDVHMPVSKFVSLSEAVPDI 408

Query: 421 ARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQ 480
           AR  HD LYK INI+LK HPE+SK E+KRLCR LDCQKLS +VRAHAVKNER+PLRTVVQ
Sbjct: 409 ARQSHDRLYKAINIFLKVHPEISKEEKKRLCRSLDCQKLSAQVRAHAVKNERMPLRTVVQ 468

Query: 481 LLFFEQESGSRAA---PQPQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPET 537
            LFF+QESGS+ A    + QEL +R K+TP  EH +   KL LG      G  K  + E 
Sbjct: 469 ALFFDQESGSKGASSRSESQELFTRGKETPTDEHSMMH-KLHLGPAS--TGKAKNVLEEG 525

Query: 538 SLKRSDKKLQLVEPERNLERG 558
             +  +K     +P++ + +G
Sbjct: 526 CKRGEEKTRSSTDPKKIVWKG 546
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function description
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIM6|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1 Back     alignment and function description
>sp|Q0WL52|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description
>sp|O64814|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
255568128591 Root phototropism protein, putative [Ric 0.931 0.937 0.682 0.0
359495610593 PREDICTED: BTB/POZ domain-containing pro 0.968 0.971 0.660 0.0
356564444583 PREDICTED: BTB/POZ domain-containing pro 0.949 0.969 0.639 0.0
356522089585 PREDICTED: BTB/POZ domain-containing pro 0.949 0.965 0.646 0.0
358347108605 BTB/POZ domain-containing protein [Medic 0.974 0.958 0.626 0.0
224089531475 predicted protein [Populus trichocarpa] 0.798 1.0 0.736 0.0
449434058600 PREDICTED: BTB/POZ domain-containing pro 0.971 0.963 0.608 0.0
356558003603 PREDICTED: BTB/POZ domain-containing pro 0.976 0.963 0.614 0.0
449491217607 PREDICTED: BTB/POZ domain-containing pro 0.897 0.879 0.648 0.0
356532859599 PREDICTED: BTB/POZ domain-containing pro 0.959 0.953 0.612 0.0
>gi|255568128|ref|XP_002525040.1| Root phototropism protein, putative [Ricinus communis] gi|223535702|gb|EEF37367.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/576 (68%), Positives = 458/576 (79%), Gaps = 22/576 (3%)

Query: 1   MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP 60
           MKFMKLGT+PDTFYTEEATR+VISD PSDLVI++NNI YLLHKFPLLPKCGLLQRLC D 
Sbjct: 1   MKFMKLGTRPDTFYTEEATRSVISDIPSDLVIRINNINYLLHKFPLLPKCGLLQRLCPDS 60

Query: 61  EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNF 120
           +DS ++TIELHDIPGGE+AFELCAK+CYGITINLSA N VPAFCAAKFLRM ESVEKGNF
Sbjct: 61  DDSSTITIELHDIPGGEEAFELCAKYCYGITINLSAQNIVPAFCAAKFLRMTESVEKGNF 120

Query: 121 ILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWS 180
           +LKLE+FF+SCILEGWKDSIVTL+TT KL+EWSENLGIIR+CIDSIVEKILTP +KV+WS
Sbjct: 121 VLKLEAFFNSCILEGWKDSIVTLQTTAKLTEWSENLGIIRKCIDSIVEKILTPPAKVTWS 180

Query: 181 YTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYAC 240
           YTYTRPG+ +K  Q  PKDWWTEDIS+LDI+LFRCI+TA+RSTY+LP QLIGEALHVYAC
Sbjct: 181 YTYTRPGF-KKSQQSVPKDWWTEDISDLDIDLFRCIITAIRSTYILPSQLIGEALHVYAC 239

Query: 241 RWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLS 300
           RWLPD TK      + S    +QT+ ++  KNR+ILE IVSMIP+DRGSVS GFLLRLLS
Sbjct: 240 RWLPDSTK-----IQPSHSMVSQTEDVT-EKNRKILEAIVSMIPADRGSVSAGFLLRLLS 293

Query: 301 TAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESY 360
            A YLG  SP+TKTEL RR+S+Q EEATV DL+ PSHS S+   QY YDIDLV +V+E +
Sbjct: 294 IANYLGA-SPITKTELIRRSSLQLEEATVTDLVFPSHSSSN---QYYYDIDLVASVIEGF 349

Query: 361 LVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAI 420
           L+LWRR  P +      N  ++ SIRK+ K+ DSYLQV+ARD NMPV K+VSLAE LP I
Sbjct: 350 LMLWRRHPPESL----ENTQVLRSIRKIGKLADSYLQVIARDKNMPVSKVVSLAEVLPDI 405

Query: 421 ARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQ 480
           AR  HDDLYK INIYLKEHP+L+K ++KRLCR LDCQKLSPEVRAHAVKNERLPLRTVVQ
Sbjct: 406 ARKDHDDLYKAINIYLKEHPDLTKADKKRLCRNLDCQKLSPEVRAHAVKNERLPLRTVVQ 465

Query: 481 LLFFEQESGSRAAPQ---PQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPET 537
           +LFFEQE GS+        QEL+SR KQ   +    +KL+        ++G R+T +PE 
Sbjct: 466 VLFFEQEKGSKETDHRMLAQELISRGKQMQISGDSTNKLQSGADGQGTMEGMRRTPMPEG 525

Query: 538 SLKRSDKKLQLVEPERNLERGGTITVTEGVESKKGQ 573
           S +      +  E ER L+ G      E VESKKG+
Sbjct: 526 STRDHQSFKRQSESERKLKSGE----IEEVESKKGK 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495610|ref|XP_003635037.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Vitis vinifera] gi|297736700|emb|CBI25736.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564444|ref|XP_003550464.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] Back     alignment and taxonomy information
>gi|356522089|ref|XP_003529682.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] Back     alignment and taxonomy information
>gi|358347108|ref|XP_003637604.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355503539|gb|AES84742.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224089531|ref|XP_002308748.1| predicted protein [Populus trichocarpa] gi|222854724|gb|EEE92271.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434058|ref|XP_004134813.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558003|ref|XP_003547299.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] Back     alignment and taxonomy information
>gi|449491217|ref|XP_004158832.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532859|ref|XP_003534987.1| PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
TAIR|locus:2160877559 AT5G47800 [Arabidopsis thalian 0.912 0.971 0.616 1.4e-181
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.944 0.886 0.359 8.7e-95
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.536 0.55 0.389 4.3e-94
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.786 0.808 0.396 4.8e-94
TAIR|locus:2045314481 NPY4 "NAKED PINS IN YUC MUTANT 0.527 0.652 0.392 8.9e-92
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.369 0.294 0.447 1.5e-91
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.747 0.705 0.437 5.7e-91
TAIR|locus:2079296588 AT3G26490 [Arabidopsis thalian 0.322 0.326 0.5 7.5e-76
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.845 0.832 0.333 4.1e-72
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.836 0.841 0.327 4.3e-70
TAIR|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
 Identities = 346/561 (61%), Positives = 431/561 (76%)

Query:     1 MKFMKLGTKPDTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP 60
             MKFMK+GTKPDTFYT+EA+R +I+D P+DLVI++NN  Y LH+  L+PKCGLL+RLC+D 
Sbjct:     1 MKFMKIGTKPDTFYTQEASRILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTDL 60

Query:    61 EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMAESVEKGNF 120
             E+SD+VTIEL+DIPGG DAFELCAKFCY ITINLSAHN V A CA+KFLRM++SV+KGN 
Sbjct:    61 EESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHNLVNALCASKFLRMSDSVDKGNL 120

Query:   121 ILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWS 180
             + KLE+FFHSCIL+GWKDSIVTL++T KL EW ENLGI+R+CIDSIVEKILTP S+VSWS
Sbjct:   121 LPKLEAFFHSCILQGWKDSIVTLQSTTKLPEWCENLGIVRKCIDSIVEKILTPTSEVSWS 180

Query:   181 YTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYAC 240
             +TYTRPGY +++H   P+DWWTEDIS+LD++LFRC++TA RST+ LPPQLIGEALHVY C
Sbjct:   181 HTYTRPGYAKRQHHSVPRDWWTEDISDLDLDLFRCVITAARSTFTLPPQLIGEALHVYTC 240

Query:   241 RWLPDIXXXXXXXXXXXXXXXXXXDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLS 300
             RWLP                    +  ++ ++RR++ T+V+MIP+D+GSVS GFLLRL+S
Sbjct:   241 RWLP------YFKSNSHSGFSVKENEAALERHRRLVNTVVNMIPADKGSVSEGFLLRLVS 294

Query:   301 TAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESY 360
              A Y+   S  TKTEL R++S+Q EEAT+ DLLLPSHS S   H + YD DLV TVLES+
Sbjct:   295 IASYVRA-SLTTKTELIRKSSLQLEEATLEDLLLPSHSSS---HLHRYDTDLVATVLESF 350

Query:   361 LVLWRRQSPGTTPAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAI 420
             L+LWRRQS  +    SNN  L+ SIRKVAK+IDSYLQ VA+D++MPV K VSL+E +P I
Sbjct:   351 LMLWRRQS--SAHLSSNNTQLLHSIRKVAKLIDSYLQAVAQDVHMPVSKFVSLSEAVPDI 408

Query:   421 ARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKLSPEVRAHAVKNERLPLRTVVQ 480
             AR  HD LYK INI+LK HPE+SK E+KRLCR LDCQKLS +VRAHAVKNER+PLRTVVQ
Sbjct:   409 ARQSHDRLYKAINIFLKVHPEISKEEKKRLCRSLDCQKLSAQVRAHAVKNERMPLRTVVQ 468

Query:   481 LLFFEQESGSRAAP---QPQELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIPET 537
              LFF+QESGS+ A    + QEL +R K+TP  EH +   KL LG      G  K  + E 
Sbjct:   469 ALFFDQESGSKGASSRSESQELFTRGKETPTDEHSMMH-KLHLGPAST--GKAKNVLEEG 525

Query:   538 SLKRSDKKLQLVEPERNLERG 558
               +  +K     +P++ + +G
Sbjct:   526 CKRGEEKTRSSTDPKKIVWKG 546
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FIK1Y5780_ARATHNo assigned EC number0.62210.91260.9713yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
pfam03000249 pfam03000, NPH3, NPH3 family 2e-96
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  294 bits (756), Expect = 2e-96
 Identities = 114/267 (42%), Positives = 167/267 (62%), Gaps = 18/267 (6%)

Query: 198 KDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTESS 257
           +DWW ED+SEL I+LF+ ++TA++S   + P++IGEAL  YA +WLP ++++ +   +S 
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKS-RGVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSE 59

Query: 258 SGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELR 317
                        + R +LETIVS++PS++GSVS  FL +LL  AI LG  S   + EL 
Sbjct: 60  E------------EQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILG-ASESCREELE 106

Query: 318 RRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESN 377
           RR  +Q ++AT+ DLL+PS    +     +YD+DLV  +LE +L             +S 
Sbjct: 107 RRIGLQLDQATLDDLLIPSGYSGEET---LYDVDLVQRILEVFLSRDAATQSSDDE-DSE 162

Query: 378 NQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLK 437
                SS+ KVAK++D YL  +A D N+ + K ++LAE +P  AR  HD LY+ I+IYLK
Sbjct: 163 ASPSSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLK 222

Query: 438 EHPELSKTERKRLCRILDCQKLSPEVR 464
            HP LS++E+KRLCR++DCQKLS E  
Sbjct: 223 AHPNLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 595
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.94
PHA02790480 Kelch-like protein; Provisional 99.92
PHA02713557 hypothetical protein; Provisional 99.91
PHA03098534 kelch-like protein; Provisional 99.87
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.69
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.59
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.26
KOG4350620 consensus Uncharacterized conserved protein, conta 99.22
KOG4591280 consensus Uncharacterized conserved protein, conta 98.96
KOG4682488 consensus Uncharacterized conserved protein, conta 98.54
KOG07831267 consensus Uncharacterized conserved protein, conta 98.25
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.21
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.84
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.54
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.19
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.83
KOG3473112 consensus RNA polymerase II transcription elongati 95.38
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.92
KOG2838401 consensus Uncharacterized conserved protein, conta 94.48
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.24
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 84.79
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=3.1e-87  Score=678.19  Aligned_cols=257  Identities=47%  Similarity=0.797  Sum_probs=223.7

Q ss_pred             CCceecccccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHcCCcccccCCCCCCCCCCCCcccchhhhhhhHHHH
Q 007644          198 KDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILE  277 (595)
Q Consensus       198 ~~WW~EDl~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya~rwL~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~llE  277 (595)
                      ++|||||++.|++++|+|||.+|+++| +++++|+++|++||+||||++.+......     ...........+||.+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llE   74 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLE   74 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHH
Confidence            479999999999999999999999999 89999999999999999999965421110     111111245679999999


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccCcccccccCCCCCCCCccccccHHHHHHHH
Q 007644          278 TIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVL  357 (595)
Q Consensus       278 tiV~lLP~er~svsc~fLf~LLR~A~~l~~as~~cr~~LErRIg~QLdqAtLdDLLIPs~~~~~~~~~tlYDVd~V~Ril  357 (595)
                      +||+|||.+|++|||+|||+|||+|++++ ||+.||.+||+|||.|||||||+|||||+.+...   +|+||||+|+|||
T Consensus        75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~-as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~---~t~yDVd~V~riv  150 (258)
T PF03000_consen   75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLG-ASSACRNELERRIGSQLDQATLDDLLIPSSPSGE---DTLYDVDLVQRIV  150 (258)
T ss_pred             HHHHhCCCCCCcccHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcc---cchhhHHHHHHHH
Confidence            99999999999999999999999999999 9999999999999999999999999999932322   5999999999999


Q ss_pred             HHHHhhhhccCCCCC-CCCCCchhhhHHHHHHHHHHHHHhhhhhCCCCCChhHHHHHHHhcCcccccccchhhHHHHHHH
Q 007644          358 ESYLVLWRRQSPGTT-PAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYL  436 (595)
Q Consensus       358 ~~Fl~~~~~~~~~~~-~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYL  436 (595)
                      ++||.+++....... ......++...++.+||||||+||+|||+|+||+|+||++|||++|++||++||||||||||||
T Consensus       151 ~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YL  230 (258)
T PF03000_consen  151 EHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYL  230 (258)
T ss_pred             HHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHH
Confidence            999987543211100 0112223456899999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHhhhhcccccCCCCHHHH
Q 007644          437 KEHPELSKTERKRLCRILDCQKLSPEVR  464 (595)
Q Consensus       437 KaHp~Lse~Er~~lCr~ldcqKLS~EAc  464 (595)
                      |+||+||++||++||++|||||||+|||
T Consensus       231 k~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  231 KAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHcccCCHHHHHHHHhhCCcccCCcccC
Confidence            9999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.2 bits (176), Expect = 3e-13
 Identities = 97/627 (15%), Positives = 186/627 (29%), Gaps = 151/627 (24%)

Query: 11  DTFYTEEATRTVISDAPSDLVIQ----VNNIRYLLHKFPLLPKCGLLQRLCSDPEDSD-- 64
           D    ++  ++++S    D +I     V+    L        +  ++Q+   +    +  
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYK 92

Query: 65  ----SVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRMA-ESVEKGN 119
                +  E          +       Y      + +N V        LR A   +    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAK 151

Query: 120 FILKLESFFH-------SC-ILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKIL 171
            +               +   L+      V  K   K+  W  NL       ++++E + 
Sbjct: 152 NV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WL-NLK-NCNSPETVLEMLQ 203

Query: 172 TPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELF------RC--IVTAVRST 223
             + ++        P +T +    +        I      L        C  ++  V++ 
Sbjct: 204 KLLYQID-------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN- 255

Query: 224 YMLPPQLIGEALHVYACRWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMI 283
                +    A ++ +C+ L  +T   TR  +        TD +S         T +S+ 
Sbjct: 256 ----AKAW-NAFNL-SCKIL--LT---TRFKQV-------TDFLSAAT-----TTHISLD 292

Query: 284 PSDRGSVSVGF----LLRLLSTAIYLGGVSPVTKTELRRRA-SIQ-FEEATVGDLLLPSH 337
                  S+      +  LL    YL         +L R   +      + + + +    
Sbjct: 293 H-----HSMTLTPDEVKSLL--LKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 338 SPSDNHHQYIYDIDLVMTVLESYLVLWRRQSPGTTPAESNNQFLMSSI-RKVAKIIDSYL 396
           +  DN      D  L   +  S  VL         PAE    F   S+    A I    L
Sbjct: 342 ATWDNWKHVNCD-KLTTIIESSLNVL--------EPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 397 QVV-ARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYLKEHPELSKT--------ER 447
            ++    I   VM +V+       + +   +      +IYL+   +L           + 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 448 KRLCRILDCQKLSPEVR--------AHAVKN----ERLPL-RTV-VQLLFFEQ----ESG 489
             + +  D   L P            H +KN    ER+ L R V +   F EQ    +S 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 490 SRAAPQP-----QELVSRRKQTPFTEHDISKLKLDLGSLERVKGTRKTTIP--ETSLKRS 542
           +  A        Q+L   +      ++D           ER+       +P  E +L  S
Sbjct: 513 AWNASGSILNTLQQLKFYKPY--ICDND--------PKYERLVNAILDFLPKIEENLICS 562

Query: 543 DKK--LQLV----------EPERNLER 557
                L++           E  + ++R
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.93
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.92
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.85
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.84
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.84
2vpk_A116 Myoneurin; transcription regulation, transcription 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.83
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.83
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.82
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.82
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.82
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.81
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.81
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.78
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.74
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.4
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.18
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.07
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.94
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.32
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.31
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.23
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.6
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.36
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.57
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 95.31
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.64
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 91.54
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 90.71
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.1
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 88.23
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.93  E-value=2.1e-26  Score=232.51  Aligned_cols=229  Identities=13%  Similarity=0.119  Sum_probs=174.4

Q ss_pred             cccccccCCCeeEEEEEc---CEEEEeccceeccCChHHHHhhCCC-CCCCcceEEec------CCCCCHHHHHHHHHHh
Q 007644           18 ATRTVISDAPSDLVIQVN---NIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELH------DIPGGEDAFELCAKFC   87 (595)
Q Consensus        18 ~~~~r~~~~l~DVtl~V~---g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~------d~pGGa~afelll~Fc   87 (595)
                      -..++.+|.+|||+|.||   |+.|++||.+|+++|+||++||++. .|+...+|.|+      +++  +++|+.+++|+
T Consensus        23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~  100 (279)
T 3i3n_A           23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYM  100 (279)
T ss_dssp             HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhh
Confidence            455888999999999998   9999999999999999999999976 67777899998      665  79999999999


Q ss_pred             hCCceeecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHH
Q 007644           88 YGITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIV  167 (595)
Q Consensus        88 Yg~~i~It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa  167 (595)
                      ||+++.++.+||..|+.||++|+|++      |++.|++||.+.+         ...||..++.+|+.+++     +.|.
T Consensus       101 Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~  160 (279)
T 3i3n_A          101 YTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKL---------HLSNCVAIHSLAHMYTL-----SQLA  160 (279)
T ss_dssp             HHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC---------CTTTHHHHHHHHHHTTC-----HHHH
T ss_pred             CcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcC---------CcchHHHHHHHHHHcCc-----HHHH
Confidence            99999999999999999999999995      9999999999988         44699999999999987     4555


Q ss_pred             HHHhcCCCcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHcCC
Q 007644          168 EKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM--LPPQLIGEALHVYACRWLPD  245 (595)
Q Consensus       168 ~ka~~~~~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~--~~ee~V~~aL~~Ya~rwL~~  245 (595)
                      .++..        +..          .++...+..+++..|+.+.+..+|   .+..+  .+|+.|++++++|++.-.  
T Consensus       161 ~~~~~--------~i~----------~~f~~v~~~~~f~~L~~~~l~~lL---~~d~L~v~sE~~vf~av~~W~~~~~--  217 (279)
T 3i3n_A          161 LKAAD--------MIR----------RNFHKVIQDEEFYTLPFHLIRDWL---SDLEITVDSEEVLFETVLKWVQRNA--  217 (279)
T ss_dssp             HHHHH--------HHH----------HTHHHHTTSSGGGGSCHHHHHHHH---TCSSCCCSCHHHHHHHHHHHHHTTH--
T ss_pred             HHHHH--------HHH----------HHHHHHhcCcChhcCCHHHHHHHh---cCcCCCCCCHHHHHHHHHHHHHcCH--
Confidence            55431        110          112223446889999999999999   55543  357899999999983110  


Q ss_pred             cccccCCCCCCCCCCCCcccchhhhhhhHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007644          246 ITKTKTRSTESSSGSQTQTDAISVGKNRRILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRR  318 (595)
Q Consensus       246 ~~~~~~~~~~~~~~~~s~~~~~~~~~~R~llEtiV~lLP~er~svsc~fLf~LLR~A~~l~~as~~cr~~LEr  318 (595)
                                              ...+..+..+...+  .=+.+|..+|..+++..-.+. .++.|+.-|..
T Consensus       218 ------------------------~~r~~~~~~ll~~V--Rf~l~~~~~L~~~v~~~~l~~-~~~~c~~~l~e  263 (279)
T 3i3n_A          218 ------------------------EERERYFEELFKLL--RLSQMKPTYLTRHVKPERLVA-NNEVCVKLVAD  263 (279)
T ss_dssp             ------------------------HHHTTTHHHHHTTS--CGGGSCHHHHHHTTTTSHHHH-TCHHHHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHhc--CCCCCCHHHHHHHhhccchhc-CCHHHHHHHHH
Confidence                                    01112333333332  124588999999998888888 89999887764
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 595
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-06
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-05
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 28  SDLVIQVNNIRYLLHKFPLLPKCGLLQR-LCSDPEDSDSVTIELHDIPGGEDAFELCAKF 86
           +D+VI V+  ++  HK  L+   GL         + + SV     +I    + F +   F
Sbjct: 26  TDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDF 83

Query: 87  CYGITINLSAHNFVPAFCAAKFLRMAESVEK 117
            Y   +NL   N +     A +L+M   V+ 
Sbjct: 84  MYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.85
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.41
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.01
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.35
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.85
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.4
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.49
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 88.88
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-22  Score=177.49  Aligned_cols=105  Identities=24%  Similarity=0.351  Sum_probs=94.4

Q ss_pred             cccccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhCCceeecC
Q 007644           18 ATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSA   96 (595)
Q Consensus        18 ~~~~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~   96 (595)
                      -..++.++.+|||+|.|+|++|++||.+|+++|+||++||.+. .++....+.+.+++  +++|+.+++|+|||++.++.
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~   93 (122)
T d1r29a_          16 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLRE   93 (122)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCch
Confidence            3457889999999999999999999999999999999999876 44444555567888  79999999999999999999


Q ss_pred             CchhhHHHhhcccCcccccccchHHHHHHHHhHH
Q 007644           97 HNFVPAFCAAKFLRMAESVEKGNFILKLESFFHS  130 (595)
Q Consensus        97 ~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~  130 (595)
                      +||..++.||++|||++      |++.|++||+.
T Consensus        94 ~~v~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          94 GNIMAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             TTHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            99999999999999995      99999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure